Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 298 of 310
Found at i:98159075 original size:40 final size:40
Alignment explanation
Indices: 98159016--98159107 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
98159006 TATTCGGATG
* *
98159016 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-CT
**
98159056 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
98159096 ATATCC-GGCTAA
1 ATATCCGGGCTAA
98159108 ATCCCAAAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
39 6 0.13
40 39 0.83
41 2 0.04
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
Found at i:98169815 original size:40 final size:40
Alignment explanation
Indices: 98169751--98169975 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
98169741 TCTTGAGTTC
*
98169751 CTATATCCGGGC-AAGTCCCGAAGGCATTTGTGCCAGTGA
1 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA
* * *
98169790 CTATATCCGGGCGAAGTCCGGAAGGCATTTGTGCGAGTAGTTG
1 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-G--A
* *
98169833 CTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA
1 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA
** *
98169873 CTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGA
1 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA
* *
98169913 CTATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-
1 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGA
*
98169953 CTATATCC-GGCTAAATCCCGAAG
1 CTATATCCGGGCTAAGTCCCGAAG
98169976 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 25 0.15
40 100 0.61
41 3 0.02
42 1 0.01
43 34 0.21
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA
Found at i:98169890 original size:83 final size:80
Alignment explanation
Indices: 98169746--98169975 Score: 288
Period size: 83 Copynumber: 2.9 Consensus size: 80
98169736 GGTACTCTTG
* * *
98169746 AGTTCCTATATCCGGGC-AAGTCCCGAAGGCATTTGTGCCAGTGACTATATCCGGGCGAAGTCCG
1 AGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACTATATCCGGGCTAAGTCCC
**
98169810 GAAGGCATTTGTGCGAGT
66 GAAGGCATTCATGC---T
* *
98169828 AGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 AGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACTATATCCGGGCTAAGTCCC
98169893 GAAGGCATTCATGCT
66 GAAGGCATTCATGCT
* * * *
98169908 AG-TGACTATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 AGTTG-CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAG-TGACTATATCCGGGCTAAGTC
98169970 CCGAAG
64 CCGAAG
98169976 ATACTTGGGT
Statistics
Matches: 133, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.12
80 44 0.33
81 2 0.02
82 15 0.11
83 56 0.42
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
AGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACTATATCCGGGCTAAGTCCC
GAAGGCATTCATGCT
Found at i:98172002 original size:30 final size:30
Alignment explanation
Indices: 98171965--98172030 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
98171955 ATGGGGCAAG
**
98171965 CCGTGTGTCACACATGGCCAAGACACATGC
1 CCGTGTGTCACACACAGCCAAGACACATGC
* * *
98171995 TCGTGTGTCACATACAGCCTAGACACATGC
1 CCGTGTGTCACACACAGCCAAGACACATGC
98172025 CCGTGT
1 CCGTGT
98172031 ATCTATCCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.21
Consensus pattern (30 bp):
CCGTGTGTCACACACAGCCAAGACACATGC
Found at i:98172947 original size:42 final size:42
Alignment explanation
Indices: 98172830--98172984 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
98172820 TACCATACCA
* * * *
98172830 ATGCCATATCCCAGATATGGTATTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* ** * * *
98172872 ATGCCAATAGCCTGGCTATAGTCTTACATGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
98172915 ATGCTATATCCTAGATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
98172957 ATGCCATATCCCAGATATGG-CTTTACAC
1 ATGCCATATCCCAGATATGGTC-TTACAC
98172985 ATAGTCTTAG
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 60 0.65
43 31 0.33
44 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:98179300 original size:56 final size:56
Alignment explanation
Indices: 98179239--98179359 Score: 151
Period size: 56 Copynumber: 2.2 Consensus size: 56
98179229 AATTTCCAGT
*
98179239 TTTTAAGGGG-CTCC-AAAAAAATTTA-ACTTTTAAAGGCCAAAATATTTTTTTCCAAC
1 TTTTAAGGGGTC-CCAAAAAAAATTTAGA-TTTTAAAGGCCAAAA-ATTTTTTACCAAC
** *
98179295 TTTTAAGGGGTCCCAAAAAAAATTTAGATTTTAGGGGCCCAAAATTTTTTACCAAC
1 TTTTAAGGGGTCCCAAAAAAAATTTAGATTTTAAAGGCCAAAAATTTTTTACCAAC
98179351 TTTT-AGGGG
1 TTTTAAGGGG
98179360 ACCTAAAATG
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
55 5 0.09
56 28 0.48
57 24 0.41
58 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (56 bp):
TTTTAAGGGGTCCCAAAAAAAATTTAGATTTTAAAGGCCAAAAATTTTTTACCAAC
Found at i:98199887 original size:24 final size:23
Alignment explanation
Indices: 98199860--98199918 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
98199850 GGTGTTACAG
98199860 TTGGATTCAAATTTTAATACTAGA
1 TTGGATTCAAATTTTAATA-TAGA
*
98199884 TTGGA-TC-AA-TTTCATATAGA
1 TTGGATTCAAATTTTAATATAGA
*
98199904 TT-GATACAAATTTTA
1 TTGGATTCAAATTTTA
98199919 TGTTATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
19 2 0.07
20 7 0.24
21 8 0.28
22 5 0.17
23 2 0.07
24 5 0.17
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.42
Consensus pattern (23 bp):
TTGGATTCAAATTTTAATATAGA
Found at i:98200031 original size:14 final size:15
Alignment explanation
Indices: 98200012--98200044 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
98200002 CTACCAAATT
98200012 AAATAAATGTTT-TA
1 AAATAAATGTTTCTA
*
98200026 AAATAATTGTTTCTA
1 AAATAAATGTTTCTA
98200041 AAAT
1 AAAT
98200045 TTCATTAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (15 bp):
AAATAAATGTTTCTA
Found at i:98200954 original size:18 final size:19
Alignment explanation
Indices: 98200933--98200968 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98200923 ACATATTTAA
*
98200933 AAAATT-ATTATCAAAATT
1 AAAATTGATAATCAAAATT
98200951 AAAATTGATAATCAAAAT
1 AAAATTGATAATCAAAAT
98200969 ATGTTCGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAATTGATAATCAAAATT
Found at i:98208198 original size:40 final size:39
Alignment explanation
Indices: 98208138--98208218 Score: 99
Period size: 40 Copynumber: 2.1 Consensus size: 39
98208128 AACTTATCGA
* **
98208138 CTAAAATGGGACTTAGTGTGCGGTTCGAAATAGCTTCGG
1 CTAAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCGG
* * *
98208177 CTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCTTCGG
1 CTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCTTCGG
98208217 CT
1 CT
98208219 GTATATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
39 6 0.17
40 29 0.83
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (39 bp):
CTAAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCGG
Found at i:98211017 original size:50 final size:50
Alignment explanation
Indices: 98210953--98211084 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 50
98210943 TGATATGTGT
* * * * *
98210953 CAGTGTAAGACCATGTCTGGGACATGGTATTGGCAC-GGAAAGAGGAGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGC-CTCGAAAGAAGAGAGC
* * * *
98211003 CAGTGTAAGACCATGTTTGGGATATGGCATCGGCCTCGATATAAGAGAGT
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAAAGAAGAGAGC
*
98211053 CAGCGTAAGACCATGTTTGGGACATGGCATCG
1 CAGTGTAAGACCATGTTTGGGACATGGCATCG
98211085 ACTCGATATG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
49 1 0.01
50 69 0.99
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (50 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAAAGAAGAGAGC
Found at i:98211184 original size:43 final size:43
Alignment explanation
Indices: 98211057--98211199 Score: 137
Period size: 43 Copynumber: 3.2 Consensus size: 43
98211047 GAGAGTCAGC
*
98211057 GTAAGACCATGTTTGGGACA-TGGCATCGACTCGATATGTGATTACAT
1 GTAAGACCATGTCTGGGACAGTGGCATCGA-T---T-TGTGATTACAT
* * * * *
98211104 GTAAGACCATGTCTGGGACATTGGCATTG-TATAGTGATTTCGT
1 GTAAGACCATGTCTGGGACAGTGGCATCGAT-TTGTGATTACAT
* * *
98211147 GTAAGACCCTGTGTGGGACAGTGGCATCGATTTGTGATAACAT
1 GTAAGACCATGTCTGGGACAGTGGCATCGATTTGTGATTACAT
98211190 GTAAGACCAT
1 GTAAGACCAT
98211200 ATCTAGGATA
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
43 50 0.62
44 3 0.04
46 1 0.01
47 19 0.24
48 7 0.09
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACAGTGGCATCGATTTGTGATTACAT
Found at i:98215190 original size:40 final size:39
Alignment explanation
Indices: 98215127--98215211 Score: 116
Period size: 40 Copynumber: 2.2 Consensus size: 39
98215117 TAATGACTTA
**
98215127 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
98215166 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
98215206 TCGGCT
1 TCGGCT
98215212 GTATATTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:98232036 original size:49 final size:49
Alignment explanation
Indices: 98231931--98232059 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
98231921 CTTCGGGACT
* * * *
98231931 TATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
98231978 TGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
98232027 TATCTC--ATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATATACACT-TTCACATCCATCACAT
98232060 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 1 0.01
47 30 0.45
48 1 0.01
49 35 0.52
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:98239978 original size:14 final size:14
Alignment explanation
Indices: 98239959--98239987 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98239949 CCAATAGTTG
98239959 AGTAATGCTCAAAC
1 AGTAATGCTCAAAC
98239973 AGTAATGCTCAAAC
1 AGTAATGCTCAAAC
98239987 A
1 A
98239988 TTAGTTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.21
Consensus pattern (14 bp):
AGTAATGCTCAAAC
Found at i:98243852 original size:12 final size:14
Alignment explanation
Indices: 98243835--98243866 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98243825 GTTAGAACAC
98243835 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
98243847 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
98243861 ATGTGT
1 ATGTGT
98243867 TTAAGATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:98243951 original size:50 final size:51
Alignment explanation
Indices: 98243832--98243977 Score: 186
Period size: 50 Copynumber: 2.9 Consensus size: 51
98243822 ATTGTTAGAA
* ***
98243832 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATAGTTTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAG-TTTAGGT
* *
98243884 CACATGTGTAGTACTAAGTGTAGGCTATTACGTGTACCAGATAG-TTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAGTTTAGGT
** * *
98243934 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAG
98243978 CTTCGGTTAC
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
50 44 0.54
52 38 0.46
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAGTTTAGGT
Found at i:98244194 original size:16 final size:15
Alignment explanation
Indices: 98244173--98244202 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
98244163 GAATGGAGTA
98244173 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
98244189 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
98244203 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:98245558 original size:21 final size:21
Alignment explanation
Indices: 98245534--98245573 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
98245524 ACGGCCTAGT
*
98245534 GACATAGGCGTATGGCCTGGA
1 GACACAGGCGTATGGCCTGGA
*
98245555 GACACAGGCGTGTGGCCTG
1 GACACAGGCGTATGGCCTG
98245574 AAAATGTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.23, G:0.40, T:0.17
Consensus pattern (21 bp):
GACACAGGCGTATGGCCTGGA
Found at i:98247046 original size:14 final size:14
Alignment explanation
Indices: 98247027--98247055 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98247017 TGAAATGGAT
98247027 TTTGATTAGTATAA
1 TTTGATTAGTATAA
98247041 TTTGATTAGTATAA
1 TTTGATTAGTATAA
98247055 T
1 T
98247056 AAGTGAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TTTGATTAGTATAA
Found at i:98249792 original size:50 final size:50
Alignment explanation
Indices: 98249717--98249869 Score: 218
Period size: 50 Copynumber: 3.1 Consensus size: 50
98249707 GTCACGTGTT
* * *
98249717 TAGTACTAAATGCAAGCTACTACGTGTACCAGATAGTTAGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTG
* * * *
98249767 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTATG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTG
* *
98249817 TAGTACTAAGTGTAGGCTACTACGTGTATCAGATA-TTTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTG
98249866 TAGT
1 TAGT
98249870 GTAACAGCCC
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 14 0.16
50 76 0.84
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTG
Found at i:98249844 original size:100 final size:100
Alignment explanation
Indices: 98249659--98249869 Score: 264
Period size: 100 Copynumber: 2.1 Consensus size: 100
98249649 TGTGAGAACA
* * * * *
98249659 CATGTGTAGTACTATATGCAGGCTAATATGTGTTTAAAATGGTTTTATGTCACGTGTTTAGTACT
1 CATGTGTAGTACTATATGCAGGCTAATACGTGTATAAAATGG-TTTAGGTCACGTATGTAGTACT
98249724 AAATGCAAGCTACTACGTGTACCAGATAGTTAGGTCG
65 AAATGCAAGCTACTACGTGTACCAGATA-TTAGGTCG
* * *
98249761 CATGTGTAGTACTA-AGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTATGTAGTACT
1 CATGTGTAGTACTATA-TGCAGGCTAATACGTGTATAAAATGGTTTAGGTCACGTATGTAGTACT
* * * * *
98249824 AAGTGTAGGCTACTACGTGTATCAGATATTTGGTCG
65 AAATGCAAGCTACTACGTGTACCAGATATTAGGTCG
98249860 CATGTGTAGT
1 CATGTGTAGT
98249870 GTAACAGCCC
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 17 0.18
100 42 0.44
101 1 0.01
102 35 0.37
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (100 bp):
CATGTGTAGTACTATATGCAGGCTAATACGTGTATAAAATGGTTTAGGTCACGTATGTAGTACTA
AATGCAAGCTACTACGTGTACCAGATATTAGGTCG
Found at i:98277772 original size:40 final size:40
Alignment explanation
Indices: 98277710--98277927 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
98277700 AAGCCAAGTA
* * * *
98277710 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
98277749 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
98277789 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
98277829 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
98277869 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
98277909 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
98277928 TTATCATCCA
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 153 0.92
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:98284179 original size:12 final size:13
Alignment explanation
Indices: 98284164--98284210 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 13
98284154 ATGTAAACAT
98284164 TTCATATAA-CAA
1 TTCATATAACCAA
** *
98284176 TTCATATAATTAT
1 TTCATATAACCAA
98284189 TTCCATATAACCAA
1 TT-CATATAACCAA
98284203 TTCATATA
1 TTCATATA
98284211 GTCATTTCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 9 0.32
13 9 0.32
14 10 0.36
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (13 bp):
TTCATATAACCAA
Found at i:98284217 original size:27 final size:26
Alignment explanation
Indices: 98284161--98284218 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
98284151 TCCATGTAAA
98284161 CATTT-CATATAACAATTCATATAAT
1 CATTTCCATATAACAATTCATATAAT
* *
98284186 TATTTCCATATAACCAATTCATATAGT
1 CATTTCCATATAA-CAATTCATATAAT
98284213 CATTTC
1 CATTTC
98284219 AAAGTGTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 4 0.14
26 7 0.25
27 17 0.61
ACGTcount: A:0.38, C:0.19, G:0.02, T:0.41
Consensus pattern (26 bp):
CATTTCCATATAACAATTCATATAAT
Found at i:98291152 original size:79 final size:81
Alignment explanation
Indices: 98291043--98291225 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
98291033 TACTCGTTCA
* *
98291043 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
98291106 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
98291123 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
98291186 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
98291202 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
98291226 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:98291225 original size:40 final size:40
Alignment explanation
Indices: 98291022--98291225 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
98291012 CGGAATTTAA
** *
98291022 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98291062 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98291102 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98291141 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
98291181 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
98291221 CCGGA
1 CCGGA
98291226 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:98314257 original size:22 final size:22
Alignment explanation
Indices: 98314232--98314315 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
98314222 CCTGAGCTGA
*** *
98314232 TGAACAGTAAGCTCTGTTGAGT
1 TGAACAGTAAGCTCTGACAAGC
*
98314254 TGAAATAGTAAGCTCTGACAAGC
1 TG-AACAGTAAGCTCTGACAAGC
* *
98314277 TGAACAGTAAGCTCTGACGACC
1 TGAACAGTAAGCTCTGACAAGC
98314299 TGAGAACAGTAAGCTCT
1 T--GAACAGTAAGCTCT
98314316 TATGAGCTGA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
22 20 0.39
23 17 0.33
24 14 0.27
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (22 bp):
TGAACAGTAAGCTCTGACAAGC
Found at i:98323923 original size:39 final size:40
Alignment explanation
Indices: 98323828--98324089 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
98323818 TTGAATGATG
*
98323828 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
98323866 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
98323907 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
98323946 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
98323985 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
98324024 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
98324063 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
98324090 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:98337452 original size:22 final size:22
Alignment explanation
Indices: 98337427--98337468 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
98337417 GGGTGGACGG
98337427 TTTTGGGGA-GAAGATTAAGGGA
1 TTTTGGGGAGGAA-ATTAAGGGA
*
98337449 TTTTGGTGAGGAAATTAAGG
1 TTTTGGGGAGGAAATTAAGG
98337469 AGTAAGGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (22 bp):
TTTTGGGGAGGAAATTAAGGGA
Found at i:98338977 original size:28 final size:28
Alignment explanation
Indices: 98338936--98338992 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
98338926 GACTGTCTCT
*
98338936 TTACTGAAATGGGCTAAAGCCCAAACTG
1 TTACTGAAAAGGGCTAAAGCCCAAACTG
* * *
98338964 TTACTGAAAAGGGCTTAGGCCCAGACTG
1 TTACTGAAAAGGGCTAAAGCCCAAACTG
98338992 T
1 T
98338993 ATTTGCCTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (28 bp):
TTACTGAAAAGGGCTAAAGCCCAAACTG
Found at i:98339961 original size:24 final size:24
Alignment explanation
Indices: 98339934--98339982 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
98339924 ACTTTTTCAA
*
98339934 ATACAAATTCAAATATATTCTCAT
1 ATACAAAATCAAATATATTCTCAT
* *
98339958 ATACAAAATCAAATGTATTTTCAT
1 ATACAAAATCAAATATATTCTCAT
98339982 A
1 A
98339983 ATCAGATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (24 bp):
ATACAAAATCAAATATATTCTCAT
Found at i:98340000 original size:18 final size:18
Alignment explanation
Indices: 98339979--98340013 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98339969 AATGTATTTT
98339979 CATAATCAGATACAGATG
1 CATAATCAGATACAGATG
* *
98339997 CATATTCAGATTCAGAT
1 CATAATCAGATACAGAT
98340014 ACAAAACTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (18 bp):
CATAATCAGATACAGATG
Found at i:98341752 original size:47 final size:46
Alignment explanation
Indices: 98341655--98341958 Score: 300
Period size: 47 Copynumber: 6.8 Consensus size: 46
98341645 TCGAGACATA
* * **
98341655 AGTCAGTGTAAGA-CATGTCTACGACAT-GCATCAACTACAAGATGAT
1 AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACT-TGAGAT-AT
* *
98341701 AGTCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATAT
*
98341747 GAGTCAGTGTAAGACCGTGTCTAGGACATGG--T--AC--GAGATGAT
1 -AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGAT-AT
98341789 AGTCAGTGTAAGACCATGTCT-GAGACATGGCATCGACTTGAGATAT
1 AGTCAGTGTAAGACCATGTCTAG-GACATGGCATCGACTTGAGATAT
*
98341835 GAGTCAGTGTAAGACCGTGTCTAGGACATGG--T--AC--GAGATGAT
1 -AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGAT-AT
98341877 AGTCAGTGTAAGACCATGTCT-GAGACATGGCATCGACTTGAGATAT
1 AGTCAGTGTAAGACCATGTCTAG-GACATGGCATCGACTTGAGATAT
* * *
98341923 GAGAT-AGTGTAAAACCGTGTCTAGGACATTGCATCG
1 -AG-TCAGTGTAAGACCATGTCTAGGACATGGCATCG
98341959 GTACCTTACC
Statistics
Matches: 219, Mismatches: 15, Indels: 47
0.78 0.05 0.17
Matches are distributed among these distances:
40 2 0.01
41 64 0.29
42 4 0.02
43 6 0.03
45 6 0.03
46 18 0.08
47 108 0.49
48 11 0.05
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (46 bp):
AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATAT
Found at i:98341805 original size:88 final size:88
Alignment explanation
Indices: 98341694--98341951 Score: 473
Period size: 88 Copynumber: 2.9 Consensus size: 88
98341684 ATCAACTACA
* *
98341694 AGATGATAGTCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGTCAGTGTAA
1 AGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATATGAGTCAGTGTAA
98341759 GACCGTGTCTAGGACATGGTACG
66 GACCGTGTCTAGGACATGGTACG
98341782 AGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATATGAGTCAGTGTAA
1 AGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATATGAGTCAGTGTAA
98341847 GACCGTGTCTAGGACATGGTACG
66 GACCGTGTCTAGGACATGGTACG
98341870 AGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATATGAGAT-AGTGTA
1 AGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATATGAG-TCAGTGTA
*
98341934 AAACCGTGTCTAGGACAT
65 AGACCGTGTCTAGGACAT
98341952 TGCATCGGTA
Statistics
Matches: 166, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
88 165 0.99
89 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.25
Consensus pattern (88 bp):
AGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATATGAGTCAGTGTAA
GACCGTGTCTAGGACATGGTACG
Found at i:98343705 original size:69 final size:65
Alignment explanation
Indices: 98343546--98343705 Score: 162
Period size: 69 Copynumber: 2.4 Consensus size: 65
98343536 TCACACAAAT
* * *
98343546 CCATGTGACCCACACAATCTACCACATGGCCTACCACACGAGCTGCCACACTGCTTACCACACAG
1 CCATGTGACCCACACAGTCTACCACATGGCCTACCACACGAGCTGCAACACGGCTTACCACACAG
* * * * *
98343611 TCGTGTGACCCACACGGTTTGCCACATGGCCGTTGACACACAC-AGTCTGCAACACGG-TCTACC
1 CCATGTGACCCACACAGTCTACCACATGGCC--T-AC-CACACGAG-CTGCAACACGGCT-TACC
*
98343674 ACATAG
60 ACACAG
*
98343680 CCATGTGACCCACATAGTCTACCACA
1 CCATGTGACCCACACAGTCTACCACA
98343706 CAGTCATGTG
Statistics
Matches: 74, Mismatches: 15, Indels: 8
0.76 0.15 0.08
Matches are distributed among these distances:
65 25 0.34
67 1 0.01
68 5 0.07
69 43 0.58
ACGTcount: A:0.28, C:0.38, G:0.17, T:0.18
Consensus pattern (65 bp):
CCATGTGACCCACACAGTCTACCACATGGCCTACCACACGAGCTGCAACACGGCTTACCACACAG
Found at i:98348152 original size:14 final size:14
Alignment explanation
Indices: 98348130--98348171 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
98348120 TATAATTTTT
98348130 CCAACATAAAATATC
1 CCAA-ATAAAATATC
* *
98348145 CTAAATAAAATAAC
1 CCAAATAAAATATC
98348159 CCAAATAAAATAT
1 CCAAATAAAATAT
98348172 ATTAATAAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 20 0.87
15 3 0.13
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (14 bp):
CCAAATAAAATATC
Found at i:98349479 original size:30 final size:30
Alignment explanation
Indices: 98349426--98349487 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
98349416 CTTTACTTTA
* * *
98349426 AACTTCTCAATTTGGCCATTTAAAGAGCTG
1 AACTTCTCAATATGACCAGTTAAAGAGCTG
* *
98349456 AACTTCTCAATATGACTAGTTAAAGAGTTG
1 AACTTCTCAATATGACCAGTTAAAGAGCTG
98349486 AA
1 AA
98349488 GAATCCTAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (30 bp):
AACTTCTCAATATGACCAGTTAAAGAGCTG
Found at i:98351678 original size:20 final size:20
Alignment explanation
Indices: 98351652--98351706 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
98351642 CCAAAAGTGT
*
98351652 TAATTAAGATTAATTTTAA-
1 TAATTAAGATTAATTTAAAC
*
98351671 TGAATTAATGATTTA-TTAAAC
1 T-AATTAA-GATTAATTTAAAC
98351692 TAATTAAGATTAATT
1 TAATTAAGATTAATT
98351707 AATAAGTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.21
20 17 0.59
21 6 0.21
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (20 bp):
TAATTAAGATTAATTTAAAC
Found at i:98352606 original size:46 final size:46
Alignment explanation
Indices: 98352523--98352745 Score: 247
Period size: 46 Copynumber: 4.9 Consensus size: 46
98352513 TGTTCTTGCC
* * * * *
98352523 TAGGTTCCCAGCTCCTGCATATGTTGCGAATTAGAGAATATC-GATT
1 TAGGTTCTCAGCTCCTGCATATGTTGTGGACTGGAGAATA-CAGATT
* ** *
98352569 TAGATTCTCATATCCTGCATATGTTGTGGATTGGAGAATACAGATT
1 TAGGTTCTCAGCTCCTGCATATGTTGTGGACTGGAGAATACAGATT
* * *
98352615 TAGGTTCCCAGCTTCAT-CATATGTTGCGGACTGGAGAATACAGATT
1 TAGGTTCTCAGC-TCCTGCATATGTTGTGGACTGGAGAATACAGATT
* * *
98352661 TCGGTTCTCAGCTTCTGCATATGTTGTGGGCTGGA-AATACAGATTT
1 TAGGTTCTCAGCTCCTGCATATGTTGTGGACTGGAGAATACAGA-TT
*
98352707 TA-GTTCTCAGCTTCTGCATATGTTGTGGACTGGAGAATA
1 TAGGTTCTCAGCTCCTGCATATGTTGTGGACTGGAGAATA
98352746 TAGAATGTTA
Statistics
Matches: 150, Mismatches: 22, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
45 42 0.28
46 105 0.70
47 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (46 bp):
TAGGTTCTCAGCTCCTGCATATGTTGTGGACTGGAGAATACAGATT
Found at i:98352680 original size:92 final size:92
Alignment explanation
Indices: 98352523--98352746 Score: 276
Period size: 92 Copynumber: 2.4 Consensus size: 92
98352513 TGTTCTTGCC
* * * * *
98352523 TAGGTTCCCAGCTCCTGCATATGTTGCGAATTAGAGAATATCGATTTAGATTCTCATATCCTGCA
1 TAGGTTCCCAGCTTCTGCATATGTTGCGGACTGGAGAATATCGATTTAGATTCTCAGATCCTGCA
*
98352588 TATGTTGTGGATTGGAGAATACAGA-TT
66 TATGTTGTGGACTGGA-AATACAGATTT
* * * *
98352615 TAGGTTCCCAGCTTCAT-CATATGTTGCGGACTGGAGAATA-CAGATTTCGGTTCTCAGCTTCTG
1 TAGGTTCCCAGCTTC-TGCATATGTTGCGGACTGGAGAATATC-GATTTAGATTCTCAGATCCTG
*
98352678 CATATGTTGTGGGCTGGAAATACAGATTT
64 CATATGTTGTGGACTGGAAATACAGATTT
* *
98352707 TA-GTTCTCAGCTTCTGCATATGTTGTGGACTGGAGAATAT
1 TAGGTTCCCAGCTTCTGCATATGTTGCGGACTGGAGAATAT
98352747 AGAATGTTAA
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
90 1 0.01
91 42 0.37
92 70 0.61
93 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (92 bp):
TAGGTTCCCAGCTTCTGCATATGTTGCGGACTGGAGAATATCGATTTAGATTCTCAGATCCTGCA
TATGTTGTGGACTGGAAATACAGATTT
Found at i:98356281 original size:16 final size:16
Alignment explanation
Indices: 98356260--98356290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98356250 CTATACATGC
*
98356260 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
98356276 AAAATACAAAAGACA
1 AAAATACAAAAGACA
98356291 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:98356894 original size:12 final size:12
Alignment explanation
Indices: 98356877--98356901 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98356867 GTCTGAGTCT
98356877 GTGTATCCAACA
1 GTGTATCCAACA
98356889 GTGTATCCAACA
1 GTGTATCCAACA
98356901 G
1 G
98356902 GAGTAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (12 bp):
GTGTATCCAACA
Found at i:98361313 original size:16 final size:15
Alignment explanation
Indices: 98361292--98361339 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
98361282 GATGTGAATA
98361292 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
98361308 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
98361323 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
98361339 A
1 A
98361340 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:98361315 original size:24 final size:24
Alignment explanation
Indices: 98361288--98361343 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
98361278 TAATGATGTG
*
98361288 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
98361312 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
98361336 AATAATAA
1 AATAATAA
98361344 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:98361322 original size:8 final size:8
Alignment explanation
Indices: 98361288--98361339 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
98361278 TAATGATGTG
*
98361288 AATAATAA
1 AATATTAA
98361296 AATATATAA
1 AATAT-TAA
98361305 AATA-TAA
1 AATATTAA
98361312 AATATTAA
1 AATATTAA
*
98361320 AATATCAA
1 AATATTAA
*
98361328 AATATTAG
1 AATATTAA
98361336 AATA
1 AATA
98361340 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:98361615 original size:25 final size:25
Alignment explanation
Indices: 98361579--98361714 Score: 72
Period size: 25 Copynumber: 5.6 Consensus size: 25
98361569 AAAAAAATAT
*
98361579 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * * *
98361604 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAATAT-TAA-AG
*
98361631 ATATATACACGTAATATAGA-ATTTAA-
1 ATATATACA--TAATATA-ATATTAAAG
* * *
98361657 A-ATGTACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
98361679 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
98361702 AAATATA-ATAATA
1 ATATATACATAATA
98361715 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
21 4 0.05
22 11 0.13
23 18 0.21
24 6 0.07
25 22 0.26
26 3 0.04
27 11 0.13
28 1 0.01
29 8 0.10
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:98361649 original size:29 final size:27
Alignment explanation
Indices: 98361500--98361649 Score: 96
Period size: 25 Copynumber: 5.6 Consensus size: 27
98361490 AATATTAAAA
* * *
98361500 ATATGTACATAATATAGTGTTAAA-A-
1 ATATATACATAATATAGTATAAAATAT
* *
98361525 ATACATACATAATATAGT-TAAGATAT
1 ATATATACATAATATAGTATAAAATAT
* * * *
98361551 ATACATAAGATAACAT-GTAAAAAAATAT
1 ATATAT-ACATAATATAGT-ATAAAATAT
* * * *
98361579 ATATATAAATAATATAATAT-TAA-AG
1 ATATATACATAATATAGTATAAAATAT
*
98361604 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAGTATAAAATAT
98361631 ATATATACACGTAATATAG
1 ATATATACA--TAATATAG
98361650 AATTTAAAAT
Statistics
Matches: 94, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
24 3 0.03
25 35 0.37
26 12 0.13
27 25 0.27
28 12 0.13
29 7 0.07
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (27 bp):
ATATATACATAATATAGTATAAAATAT
Found at i:98361979 original size:30 final size:30
Alignment explanation
Indices: 98361945--98362030 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 30
98361935 GTGGTGGTGG
* * *
98361945 AGTGTGGCTGGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
98361975 AGTGTGGCTAATGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
98362005 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
98362031 CAAAGGCTAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.17, C:0.06, G:0.50, T:0.27
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:98362020 original size:18 final size:18
Alignment explanation
Indices: 98361965--98362020 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
98361955 GTGGAGTAGG
98361965 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
*
98361983 TAAT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
98361995 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
98362013 TAGTGGAG
1 TAGTGGAG
98362021 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
12 2 0.07
13 4 0.14
14 4 0.14
16 4 0.14
17 4 0.14
18 10 0.36
ACGTcount: A:0.21, C:0.07, G:0.46, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:98371143 original size:68 final size:69
Alignment explanation
Indices: 98371020--98371151 Score: 221
Period size: 68 Copynumber: 1.9 Consensus size: 69
98371010 TTAAACTTAA
* *
98371020 TCACTTTAATATTAAATTAATATAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAG
1 TCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACATTAAATTAAATTTAATATTAAG
98371085 ATGG
66 ATGG
* *
98371089 TCACTTTAATATTAAATTAATAAAATA-CTATTAAGATAAATATTAAATTAAATTTAATATTAA
1 TCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACATTAAATTAAATTTAATATTAA
98371152 AATAATATTA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
68 33 0.56
69 26 0.44
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (69 bp):
TCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACATTAAATTAAATTTAATATTAAG
ATGG
Found at i:98372260 original size:7 final size:7
Alignment explanation
Indices: 98372248--98372276 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
98372238 TAAATCACAC
98372248 CCCTAAA
1 CCCTAAA
98372255 CCCTAAA
1 CCCTAAA
98372262 CCCTAAA
1 CCCTAAA
98372269 CCCTAAA
1 CCCTAAA
98372276 C
1 C
98372277 TCTTAGCCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.45, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCTAAA
Found at i:98373018 original size:42 final size:42
Alignment explanation
Indices: 98372959--98373044 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
98372949 CCAAGTACAC
98372959 ATATGTCCTTTATCATTAACCCAAATGCTTATATAAATCTAA
1 ATATGTCCTTTATCATTAACCCAAATGCTTATATAAATCTAA
98373001 ATATGTCCTTTATCATTAACCCAAATGCTTATATAAATCTAA
1 ATATGTCCTTTATCATTAACCCAAATGCTTATATAAATCTAA
98373043 AT
1 AT
98373045 CCCAATGTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (42 bp):
ATATGTCCTTTATCATTAACCCAAATGCTTATATAAATCTAA
Found at i:98373236 original size:11 final size:11
Alignment explanation
Indices: 98373220--98373244 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98373210 GCTGAACACA
98373220 AAGTACTTCAC
1 AAGTACTTCAC
98373231 AAGTACTTCAC
1 AAGTACTTCAC
98373242 AAG
1 AAG
98373245 CTTTATACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (11 bp):
AAGTACTTCAC
Found at i:98380756 original size:21 final size:21
Alignment explanation
Indices: 98380707--98380756 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
98380697 TAGGGCCTAA
* *
98380707 ACCGTGTGGTAGAGATACACG
1 ACCGTGTGGCAGAGAGACACG
*
98380728 ACCATGTGGCAGAGAGACACG
1 ACCGTGTGGCAGAGAGACACG
*
98380749 CCCGTGTG
1 ACCGTGTG
98380757 ACTGAAGTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.34, T:0.16
Consensus pattern (21 bp):
ACCGTGTGGCAGAGAGACACG
Found at i:98382832 original size:31 final size:31
Alignment explanation
Indices: 98382765--98382832 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
98382755 GTTACAAAAT
* *
98382765 AGTCAGTGAATTATTTGAAAATTTTCATTTA
1 AGTCACTGAATTATTTGAAAATTTTCATTCA
*
98382796 AGTCACTGAATTATTTGAAAATTTTTATTCA
1 AGTCACTGAATTATTTGAAAATTTTCATTCA
*
98382827 TGTCAC
1 AGTCAC
98382833 CAAACTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (31 bp):
AGTCACTGAATTATTTGAAAATTTTCATTCA
Found at i:98383241 original size:3 final size:3
Alignment explanation
Indices: 98383233--98383258 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
98383223 AGTTTACCTC
98383233 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
98383259 CAACAAAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:98383778 original size:29 final size:27
Alignment explanation
Indices: 98383711--98383801 Score: 71
Period size: 29 Copynumber: 3.3 Consensus size: 27
98383701 GATTATGATA
* *
98383711 AAAAAAATTAT-TATATTATAAATCCT
1 AAAAAAATTATATATTTTATAAATCAT
*
98383737 AAAAATAATTTATATATTTTATAAAGTTAT
1 AAAAA-AA-TTATATATTTTATAAA-TCAT
* * *
98383767 AACAAAAATTATAT-TATT-TAAACCCT
1 AA-AAAAATTATATATTTTATAAATCAT
98383793 AAAAAAATT
1 AAAAAAATT
98383802 TTAAAGTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
25 7 0.13
26 8 0.15
27 6 0.11
28 7 0.13
29 16 0.30
30 6 0.11
31 3 0.06
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.38
Consensus pattern (27 bp):
AAAAAAATTATATATTTTATAAATCAT
Found at i:98392832 original size:1000 final size:1000
Alignment explanation
Indices: 98390893--98392894 Score: 4004
Period size: 1000 Copynumber: 2.0 Consensus size: 1000
98390883 ATAACAGCCT
98390893 TATAATTTCCCCTTGGGCAGCCGAATGGATAGCAGCCAAAAATGAATGTCATTTGGAACATGAAC
1 TATAATTTCCCCTTGGGCAGCCGAATGGATAGCAGCCAAAAATGAATGTCATTTGGAACATGAAC
98390958 AACCTTCTTTGTGTAAATACTTAAATATAACCAACCCAAGGTATAAATGGACGAATTGGAACAAC
66 AACCTTCTTTGTGTAAATACTTAAATATAACCAACCCAAGGTATAAATGGACGAATTGGAACAAC
98391023 CACCATAATGTGAAGAACGTTTGGAAACTGAATGGCTTATGTGAATAACTTCTTGTCCAAACTCT
131 CACCATAATGTGAAGAACGTTTGGAAACTGAATGGCTTATGTGAATAACTTCTTGTCCAAACTCT
98391088 TCAAACATTTACTTGGAAAAGCTCATAACAGCTGTTAGCCTTTAATTCATCTCTATGACAGCTGA
196 TCAAACATTTACTTGGAAAAGCTCATAACAGCTGTTAGCCTTTAATTCATCTCTATGACAGCTGA
98391153 ATTTATTCCTCTCTTTAAATGCCCATCTATGTAACAGCTGTTTCAAATGATTAATTCACCTATAA
261 ATTTATTCCTCTCTTTAAATGCCCATCTATGTAACAGCTGTTTCAAATGATTAATTCACCTATAA
98391218 ACACAATTAAACAAATTAAATGGATGTAGCAAATTAATTAAGCTGGAACATATTAATTGTCAAAA
326 ACACAATTAAACAAATTAAATGGATGTAGCAAATTAATTAAGCTGGAACATATTAATTGTCAAAA
98391283 TTATTTGAATAACTAAATAAAATTAAAACAACTTAATTACTTAAATTAAGATAACTAAACACATT
391 TTATTTGAATAACTAAATAAAATTAAAACAACTTAATTACTTAAATTAAGATAACTAAACACATT
98391348 ACTAAGACTCATTTAATACTTAAACTAAATATTATTTAATTTTTATTCCAGCAATTAAATGCATA
456 ACTAAGACTCATTTAATACTTAAACTAAATATTATTTAATTTTTATTCCAGCAATTAAATGCATA
98391413 AACTAAAGAAAGCTATAATTGAGCTAAACCAAATTAGATATTCCAGCAAATTGATGCACAAGCTA
521 AACTAAAGAAAGCTATAATTGAGCTAAACCAAATTAGATATTCCAGCAAATTGATGCACAAGCTA
98391478 AAAACAAATAATGTGAAGCTCAATGAGTTGGGATGAGGTATAAATGAGCTAAATGAGATTGTTTC
586 AAAACAAATAATGTGAAGCTCAATGAGTTGGGATGAGGTATAAATGAGCTAAATGAGATTGTTTC
98391543 AAGTCGCATGGAACACTTGAGCTGGAAATCCGTGATTGTTCGATTATTCTAACAATGGTTTCCAC
651 AAGTCGCATGGAACACTTGAGCTGGAAATCCGTGATTGTTCGATTATTCTAACAATGGTTTCCAC
98391608 CCCAATCTTGAACAATTAAAACCTACACACAAGTTAACAAATTGAAATTAAATTTCATTTTGCAC
716 CCCAATCTTGAACAATTAAAACCTACACACAAGTTAACAAATTGAAATTAAATTTCATTTTGCAC
98391673 TTGGGCCCCTCGTGTTTAGGCCAATCTCGGTGACGTCGAGTTGTGTCGTAACATGATACAGCTGG
781 TTGGGCCCCTCGTGTTTAGGCCAATCTCGGTGACGTCGAGTTGTGTCGTAACATGATACAGCTGG
98391738 GATCGCATCAGGATATCCCCTCAACAGTGTACTTCGTAGGGGGTACATCATCACTTTTTGTGTAA
846 GATCGCATCAGGATATCCCCTCAACAGTGTACTTCGTAGGGGGTACATCATCACTTTTTGTGTAA
98391803 TTGACTAAACAGTGAAAATCATTTTTTGATTGCCAACCATTAGAACTTGATGTCATTCCCTTATA
911 TTGACTAAACAGTGAAAATCATTTTTTGATTGCCAACCATTAGAACTTGATGTCATTCCCTTATA
98391868 AGTGTTTCTAGCATCGAACATTGGC
976 AGTGTTTCTAGCATCGAACATTGGC
98391893 TATAATTTCCCCTTGGGCAGCCGAATGGATAGCAGCCAAAAATGAATGTCATTTGGAACATGAAC
1 TATAATTTCCCCTTGGGCAGCCGAATGGATAGCAGCCAAAAATGAATGTCATTTGGAACATGAAC
98391958 AACCTTCTTTGTGTAAATACTTAAATATAACCAACCCAAGGTATAAATGGACGAATTGGAACAAC
66 AACCTTCTTTGTGTAAATACTTAAATATAACCAACCCAAGGTATAAATGGACGAATTGGAACAAC
98392023 CACCATAATGTGAAGAACGTTTGGAAACTGAATGGCTTATGTGAATAACTTCTTGTCCAAACTCT
131 CACCATAATGTGAAGAACGTTTGGAAACTGAATGGCTTATGTGAATAACTTCTTGTCCAAACTCT
98392088 TCAAACATTTACTTGGAAAAGCTCATAACAGCTGTTAGCCTTTAATTCATCTCTATGACAGCTGA
196 TCAAACATTTACTTGGAAAAGCTCATAACAGCTGTTAGCCTTTAATTCATCTCTATGACAGCTGA
98392153 ATTTATTCCTCTCTTTAAATGCCCATCTATGTAACAGCTGTTTCAAATGATTAATTCACCTATAA
261 ATTTATTCCTCTCTTTAAATGCCCATCTATGTAACAGCTGTTTCAAATGATTAATTCACCTATAA
98392218 ACACAATTAAACAAATTAAATGGATGTAGCAAATTAATTAAGCTGGAACATATTAATTGTCAAAA
326 ACACAATTAAACAAATTAAATGGATGTAGCAAATTAATTAAGCTGGAACATATTAATTGTCAAAA
98392283 TTATTTGAATAACTAAATAAAATTAAAACAACTTAATTACTTAAATTAAGATAACTAAACACATT
391 TTATTTGAATAACTAAATAAAATTAAAACAACTTAATTACTTAAATTAAGATAACTAAACACATT
98392348 ACTAAGACTCATTTAATACTTAAACTAAATATTATTTAATTTTTATTCCAGCAATTAAATGCATA
456 ACTAAGACTCATTTAATACTTAAACTAAATATTATTTAATTTTTATTCCAGCAATTAAATGCATA
98392413 AACTAAAGAAAGCTATAATTGAGCTAAACCAAATTAGATATTCCAGCAAATTGATGCACAAGCTA
521 AACTAAAGAAAGCTATAATTGAGCTAAACCAAATTAGATATTCCAGCAAATTGATGCACAAGCTA
98392478 AAAACAAATAATGTGAAGCTCAATGAGTTGGGATGAGGTATAAATGAGCTAAATGAGATTGTTTC
586 AAAACAAATAATGTGAAGCTCAATGAGTTGGGATGAGGTATAAATGAGCTAAATGAGATTGTTTC
98392543 AAGTCGCATGGAACACTTGAGCTGGAAATCCGTGATTGTTCGATTATTCTAACAATGGTTTCCAC
651 AAGTCGCATGGAACACTTGAGCTGGAAATCCGTGATTGTTCGATTATTCTAACAATGGTTTCCAC
98392608 CCCAATCTTGAACAATTAAAACCTACACACAAGTTAACAAATTGAAATTAAATTTCATTTTGCAC
716 CCCAATCTTGAACAATTAAAACCTACACACAAGTTAACAAATTGAAATTAAATTTCATTTTGCAC
98392673 TTGGGCCCCTCGTGTTTAGGCCAATCTCGGTGACGTCGAGTTGTGTCGTAACATGATACAGCTGG
781 TTGGGCCCCTCGTGTTTAGGCCAATCTCGGTGACGTCGAGTTGTGTCGTAACATGATACAGCTGG
98392738 GATCGCATCAGGATATCCCCTCAACAGTGTACTTCGTAGGGGGTACATCATCACTTTTTGTGTAA
846 GATCGCATCAGGATATCCCCTCAACAGTGTACTTCGTAGGGGGTACATCATCACTTTTTGTGTAA
98392803 TTGACTAAACAGTGAAAATCATTTTTTGATTGCCAACCATTAGAACTTGATGTCATTCCCTTATA
911 TTGACTAAACAGTGAAAATCATTTTTTGATTGCCAACCATTAGAACTTGATGTCATTCCCTTATA
98392868 AGTGTTTCTAGCATCGAACATTGGC
976 AGTGTTTCTAGCATCGAACATTGGC
98392893 TA
1 TA
98392895 ACCAAAATTC
Statistics
Matches: 1002, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1000 1002 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (1000 bp):
TATAATTTCCCCTTGGGCAGCCGAATGGATAGCAGCCAAAAATGAATGTCATTTGGAACATGAAC
AACCTTCTTTGTGTAAATACTTAAATATAACCAACCCAAGGTATAAATGGACGAATTGGAACAAC
CACCATAATGTGAAGAACGTTTGGAAACTGAATGGCTTATGTGAATAACTTCTTGTCCAAACTCT
TCAAACATTTACTTGGAAAAGCTCATAACAGCTGTTAGCCTTTAATTCATCTCTATGACAGCTGA
ATTTATTCCTCTCTTTAAATGCCCATCTATGTAACAGCTGTTTCAAATGATTAATTCACCTATAA
ACACAATTAAACAAATTAAATGGATGTAGCAAATTAATTAAGCTGGAACATATTAATTGTCAAAA
TTATTTGAATAACTAAATAAAATTAAAACAACTTAATTACTTAAATTAAGATAACTAAACACATT
ACTAAGACTCATTTAATACTTAAACTAAATATTATTTAATTTTTATTCCAGCAATTAAATGCATA
AACTAAAGAAAGCTATAATTGAGCTAAACCAAATTAGATATTCCAGCAAATTGATGCACAAGCTA
AAAACAAATAATGTGAAGCTCAATGAGTTGGGATGAGGTATAAATGAGCTAAATGAGATTGTTTC
AAGTCGCATGGAACACTTGAGCTGGAAATCCGTGATTGTTCGATTATTCTAACAATGGTTTCCAC
CCCAATCTTGAACAATTAAAACCTACACACAAGTTAACAAATTGAAATTAAATTTCATTTTGCAC
TTGGGCCCCTCGTGTTTAGGCCAATCTCGGTGACGTCGAGTTGTGTCGTAACATGATACAGCTGG
GATCGCATCAGGATATCCCCTCAACAGTGTACTTCGTAGGGGGTACATCATCACTTTTTGTGTAA
TTGACTAAACAGTGAAAATCATTTTTTGATTGCCAACCATTAGAACTTGATGTCATTCCCTTATA
AGTGTTTCTAGCATCGAACATTGGC
Found at i:98394243 original size:14 final size:14
Alignment explanation
Indices: 98394215--98394254 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
98394205 TTTACATCTC
98394215 AAAAATTATA-A-A
1 AAAAATTATATATA
98394227 AAAAATTATATATA
1 AAAAATTATATATA
98394241 AAAAATTATATATA
1 AAAAATTATATATA
98394255 TATATAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 10 0.38
13 1 0.04
14 15 0.58
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAATTATATATA
Found at i:98394948 original size:20 final size:20
Alignment explanation
Indices: 98394909--98394948 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
98394899 CACCTCTAGT
*
98394909 GGTATCGGATATCCTCTTTG
1 GGTATCGGATATCCTATTTG
98394929 GGTATCGCGATATCC-ATTTG
1 GGTATCG-GATATCCTATTTG
98394949 CTAAGGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (20 bp):
GGTATCGGATATCCTATTTG
Found at i:98404146 original size:29 final size:29
Alignment explanation
Indices: 98404104--98404160 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
98404094 AAGCTAAAAT
* *
98404104 TGTCAATTAGTCCCTTAATAATCAACTTA
1 TGTCAATTAGTCCCTGAAGAATCAACTTA
*
98404133 TGTCGATTAGTCCCTGAAGAATCAACTT
1 TGTCAATTAGTCCCTGAAGAATCAACTT
98404161 GTTTGGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (29 bp):
TGTCAATTAGTCCCTGAAGAATCAACTTA
Found at i:98404268 original size:150 final size:150
Alignment explanation
Indices: 98403918--98404364 Score: 731
Period size: 150 Copynumber: 3.0 Consensus size: 150
98403908 ATAGATCAAA
* * * *
98403918 AATTGGATCAAAATGGAGGTAATTAAAGAAAAGCTAAAATTGTCAATTAGCCCCTGAAGAATTAA
1 AATTGGATCAAAACGGAGGTAATTGAAGAAAAGCTAAAATTGTCAATTAGTCCCTGAAGAATCAA
* * *
98403983 CTTGTGCCGATTAGTCCCCGAAGAATCAACTTGTTTGGTGTTTTGATCAGGTAAGTTCATATGG-
66 CTTATGTCGATTAGTCCCTGAAGAATCAACTTGTTTGGTGTTTTGATCAGGTAAGTTCATATGGT
*
98404047 ---TATTTATTTAGGGTGTT
131 ATTTATTTATTTAGGTTGTT
* * *
98404064 AATTGGATCAAAACGGAGGTAACTGAAGAAAAGCTAAAATTGTCAATTAGTCCCTTAATAATCAA
1 AATTGGATCAAAACGGAGGTAATTGAAGAAAAGCTAAAATTGTCAATTAGTCCCTGAAGAATCAA
* *
98404129 CTTATGTCGATTAGTCCCTGAAGAATCAACTTGTTTGGTTTTTTGATCAAGTAAGTTCATATGGT
66 CTTATGTCGATTAGTCCCTGAAGAATCAACTTGTTTGGTGTTTTGATCAGGTAAGTTCATATGGT
*
98404194 ATTTATTTATTTAGATTGTT
131 ATTTATTTATTTAGGTTGTT
98404214 AATTGGATCAAAACGGAGGTAATTGAAGAAAAGCTAAAATTGTCAATTAGTCCCTGAAGAATCAA
1 AATTGGATCAAAACGGAGGTAATTGAAGAAAAGCTAAAATTGTCAATTAGTCCCTGAAGAATCAA
*
98404279 CTTATGTCAATTAGTCCCTGAAGAATCAACTTGTTTGGTGTTTTGATCAGGTAAGTTCATATGGT
66 CTTATGTCGATTAGTCCCTGAAGAATCAACTTGTTTGGTGTTTTGATCAGGTAAGTTCATATGGT
98404344 ATTTATTTATTTAGGTTGTT
131 ATTTATTTATTTAGGTTGTT
98404364 A
1 A
98404365 TGTATTTGAT
Statistics
Matches: 276, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
146 117 0.42
150 159 0.58
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.36
Consensus pattern (150 bp):
AATTGGATCAAAACGGAGGTAATTGAAGAAAAGCTAAAATTGTCAATTAGTCCCTGAAGAATCAA
CTTATGTCGATTAGTCCCTGAAGAATCAACTTGTTTGGTGTTTTGATCAGGTAAGTTCATATGGT
ATTTATTTATTTAGGTTGTT
Found at i:98404289 original size:29 final size:29
Alignment explanation
Indices: 98404254--98404310 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
98404244 AAGCTAAAAT
98404254 TGTCAATTAGTCCCTGAAGAATCAACTTA
1 TGTCAATTAGTCCCTGAAGAATCAACTTA
98404283 TGTCAATTAGTCCCTGAAGAATCAACTT
1 TGTCAATTAGTCCCTGAAGAATCAACTT
98404311 GTTTGGTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (29 bp):
TGTCAATTAGTCCCTGAAGAATCAACTTA
Found at i:98406374 original size:80 final size:81
Alignment explanation
Indices: 98406159--98406375 Score: 312
Period size: 81 Copynumber: 2.7 Consensus size: 81
98406149 CGACAACGAA
* * *
98406159 AGAGAGATGACGTCACGATATTGATCCTGAATTTTTAAAAATTTGCAATTTGGTTAAGTGAGGAG
1 AGAGAGATGACGTCACGATATTGATCCTGAATTTTTAAAACTTTGCAATTTGGTCAAATGAGGAG
* **
98406224 TGTGATATCCAATGAG
66 TGCGATATCCAACCAG
* *
98406240 AGAGAGATGACGTCATGATATTGATCCTGAATTTTTAAAACTTTGCAATTTGGTCAAATGAGGGG
1 AGAGAGATGACGTCACGATATTGATCCTGAATTTTTAAAACTTTGCAATTTGGTCAAATGAGGAG
98406305 TGCG-TCATCCAACCAG
66 TGCGAT-ATCCAACCAG
* * *
98406321 AGAGAGATGATGTCACGAT-TTGATCCTGAATTTTTAGAACTTTTCAATTTGGTCA
1 AGAGAGATGACGTCACGATATTGATCCTGAATTTTTAAAACTTTGCAATTTGGTCA
98406376 TAATTCGTGC
Statistics
Matches: 123, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 35 0.28
81 88 0.72
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (81 bp):
AGAGAGATGACGTCACGATATTGATCCTGAATTTTTAAAACTTTGCAATTTGGTCAAATGAGGAG
TGCGATATCCAACCAG
Found at i:98406945 original size:27 final size:27
Alignment explanation
Indices: 98406915--98406980 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
98406905 AACTCTTAAA
* *
98406915 GGTA-TCATCCATGGTATGGCTCCTAAT
1 GGTACTCATCCATGGTACGACTCCT-AT
* *
98406942 GGTACCCCTCCATGGTACGACTCCTAT
1 GGTACTCATCCATGGTACGACTCCTAT
98406969 GGTACTCATCCA
1 GGTACTCATCCA
98406981 CGATACAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 16 0.50
28 16 0.50
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (27 bp):
GGTACTCATCCATGGTACGACTCCTAT
Found at i:98406991 original size:27 final size:28
Alignment explanation
Indices: 98406581--98407112 Score: 188
Period size: 28 Copynumber: 19.2 Consensus size: 28
98406571 GGGTGTTATA
98406581 GTACCCATCCACGATACAACTCCTAATG
1 GTACCCATCCACGATACAACTCCTAATG
** *
98406609 GTGTCCATCCACGATACAACT-CTGAAAG
1 GTACCCATCCACGATACAACTCCT-AATG
* * * * *
98406637 GTACCTATCCATGGTACGACTCCTAACG
1 GTACCCATCCACGATACAACTCCTAATG
*
98406665 GTA-CCATCCAC-A-ACATGACTCCTAATA
1 GTACCCATCCACGATACA--ACTCCTAATG
* * *
98406692 GTAGCCATCCACAATAAAACTCCTAATG
1 GTACCCATCCACGATACAACTCCTAATG
* * * * * *
98406720 GTTCCCCTCCATGGTACAACTCCTAGTT
1 GTACCCATCCACGATACAACTCCTAATG
* * * * * *
98406748 GTATCCGTCTACGACACGACTCCTAAAG
1 GTACCCATCCACGATACAACTCCTAATG
* * * * **
98406776 GTACCTATCTATGGTATGAC-CCATAATG
1 GTACCCATCCACGATACAACTCC-TAATG
* * ** ** *
98406804 GTATCCATCCATGGCATGATTCCT-ATAG
1 GTACCCATCCACGATACAACTCCTAAT-G
* ** *
98406832 GTACCCATCCACGGTATGACTCCTAAAG
1 GTACCCATCCACGATACAACTCCTAATG
** *
98406860 GTATGCATCTACCG-TACAACTCCTAATG
1 GTACCCATCCA-CGATACAACTCCTAATG
* ** * * *
98406888 GCACCCATCCATTACACAACTCTTAAAG
1 GTACCCATCCACGATACAACTCCTAATG
* * * ***
98406916 GTA-TCATCCATGGTATGGCTCCTAATG
1 GTACCCATCCACGATACAACTCCTAATG
* * * *
98406943 GTACCCCTCCATGGTACGACTCCT-ATG
1 GTACCCATCCACGATACAACTCCTAATG
* * *
98406970 GTACTCATCCACGATACAACTCTTAAAG
1 GTACCCATCCACGATACAACTCCTAATG
* ** * * * * * *
98406998 GTATCTTTCTACGGTATAACTCTTACTA
1 GTACCCATCCACGATACAACTCCTAATG
* * * * *
98407026 GTATCC-TTCATGGTATAACTCCTAATG
1 GTACCCATCCACGATACAACTCCTAATG
* *
98407053 GTACCCATCCACGGTACTACTCCTAATG
1 GTACCCATCCACGATACAACTCCTAATG
* *
98407081 GTACCCAT-CAC-AGCACAACTCCTAAAG
1 GTACCCATCCACGA-TACAACTCCTAATG
98407108 GTACC
1 GTACC
98407113 TTTCTACTGA
Statistics
Matches: 369, Mismatches: 118, Indels: 35
0.71 0.23 0.07
Matches are distributed among these distances:
25 2 0.01
27 101 0.27
28 256 0.69
29 8 0.02
30 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
GTACCCATCCACGATACAACTCCTAATG
Found at i:98408081 original size:26 final size:26
Alignment explanation
Indices: 98408031--98408082 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
98408021 AATTTGATTA
* *
98408031 TCACTTTCTTTTTTTGAATATAATTC
1 TCACTTTCTTTATTTGAATAAAATTC
98408057 TCACTTTCTTTATTTG-ATGAAAATTC
1 TCACTTTCTTTATTTGAAT-AAAATTC
98408083 ACGAACCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.25, C:0.15, G:0.06, T:0.54
Consensus pattern (26 bp):
TCACTTTCTTTATTTGAATAAAATTC
Found at i:98409575 original size:12 final size:12
Alignment explanation
Indices: 98409549--98409585 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
98409539 AGGGTTGAAT
98409549 TAATTTTTTT-A
1 TAATTTTTTTAA
98409560 -AATTTTTTTAA
1 TAATTTTTTTAA
*
98409571 TAATTTATTTAA
1 TAATTTTTTTAA
98409583 TAA
1 TAA
98409586 ATTGTATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
10 9 0.39
11 1 0.04
12 13 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TAATTTTTTTAA
Found at i:98411761 original size:38 final size:38
Alignment explanation
Indices: 98411710--98411787 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
98411700 TCCTTTGCAG
98411710 TTAGTTTTATAGTTAGTAACTTACTGTTCAGCTTGTAA
1 TTAGTTTTATAGTTAGTAACTTACTGTTCAGCTTGTAA
*
98411748 TTAGTTTTATAGTTAGTACCTTACTGTTCAGCTTGTAA
1 TTAGTTTTATAGTTAGTAACTTACTGTTCAGCTTGTAA
98411786 TT
1 TT
98411788 CCCTGTAGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.49
Consensus pattern (38 bp):
TTAGTTTTATAGTTAGTAACTTACTGTTCAGCTTGTAA
Found at i:98415780 original size:20 final size:19
Alignment explanation
Indices: 98415710--98415781 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
98415700 AAAATACAAA
*
98415710 AAAAATTCGAAATAAATTT-T
1 AAAAATTC-AAA-ATATTTAT
*
98415730 AAAAATTCAATATATTTAT
1 AAAAATTCAAAATATTTAT
*
98415749 AAAAAATCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
98415768 AAAATTTTCAAAAT
1 AAAA-ATTCAAAAT
98415782 TTATATATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
18 5 0.11
19 24 0.55
20 15 0.34
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:98415813 original size:46 final size:46
Alignment explanation
Indices: 98415723--98415814 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
98415713 AATTCGAAAT
*
98415723 AAATTTTAAAAATTCAATATATTTATAAAAAATCAAAATATTTATA
1 AAATTTTAAAAATTCAATATATTTATAAAAAATAAAAATATTTATA
* * *
98415769 AAATTTTCAAAATT-TATATATTTTTTAAAAAATTAAAAAT-TTTATA
1 AAATTTTAAAAATTCAATATA-TTTATAAAAAA-TAAAAATATTTATA
98415815 GAATAATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
45 5 0.12
46 29 0.73
47 6 0.15
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (46 bp):
AAATTTTAAAAATTCAATATATTTATAAAAAATAAAAATATTTATA
Found at i:98417744 original size:18 final size:19
Alignment explanation
Indices: 98417702--98417746 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
98417692 CAAGCTTAAT
98417702 ATTAAATTAATTAAGATTTA
1 ATTAAA-TAATTAAGATTTA
* *
98417722 GTTAAATAATT-AGGTTTA
1 ATTAAATAATTAAGATTTA
98417740 ATTAAAT
1 ATTAAAT
98417747 GTTAAACTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 12 0.55
19 5 0.23
20 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (19 bp):
ATTAAATAATTAAGATTTA
Found at i:98419792 original size:36 final size:36
Alignment explanation
Indices: 98419744--98419814 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
98419734 AGTAAACTCT
*
98419744 ATTCAATTCAACAGCCTTTCGGATCTATTCTGACTA
1 ATTCAATTCAACAGCCTTTCAGATCTATTCTGACTA
** *
98419780 ATTC-ATTCCAACAGTTTTTCAGATCTATTTTGACT
1 ATTCAATT-CAACAGCCTTTCAGATCTATTCTGACT
98419815 GATGTGCTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 3 0.10
36 27 0.90
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.41
Consensus pattern (36 bp):
ATTCAATTCAACAGCCTTTCAGATCTATTCTGACTA
Found at i:98422482 original size:27 final size:27
Alignment explanation
Indices: 98422443--98422582 Score: 149
Period size: 27 Copynumber: 5.1 Consensus size: 27
98422433 CCCAAAATTT
98422443 ATAAAATGACTATTTTGCCCTTATGTG
1 ATAAAATGACTATTTTGCCCTTATGTG
* * *
98422470 GTAAAATGACTATTCTACCCTTATATGGTG
1 ATAAAATGACTATTTTGCCC-T-TAT-GTG
98422500 ATAAAATGA-TCATTTTGCCCTTATGT-
1 ATAAAATGACT-ATTTTGCCCTTATGTG
* *
98422526 AGTAAAATGACTATTTTTCCCTTATATG
1 A-TAAAATGACTATTTTGCCCTTATGTG
* * *
98422554 ATAAGATGACTGTTTTGCCCCTATGTG
1 ATAAAATGACTATTTTGCCCTTATGTG
98422581 AT
1 AT
98422583 GTATATTTAT
Statistics
Matches: 93, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
26 1 0.01
27 63 0.68
28 6 0.06
29 5 0.05
30 18 0.19
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (27 bp):
ATAAAATGACTATTTTGCCCTTATGTG
Found at i:98422515 original size:57 final size:57
Alignment explanation
Indices: 98422443--98422579 Score: 183
Period size: 57 Copynumber: 2.5 Consensus size: 57
98422433 CCCAAAATTT
*
98422443 ATAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTATTCTACCCTTATATGGTG
1 ATAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATTCTACCCTTATATGGTG
* *
98422500 ATAAAATGA-TCATTTTGCCCTTATGTAGTAAAATGACTATTTTTCCCTTATA---TG
1 ATAAAATGACT-ATTTTGCCCTTATGTAGTAAAATGACTATTCTACCCTTATATGGTG
* * *
98422554 ATAAGATGACTGTTTTGCCCCTATGT
1 ATAAAATGACTATTTTGCCCTTATGT
98422580 GATGTATATT
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
54 23 0.32
55 1 0.01
56 1 0.01
57 47 0.65
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (57 bp):
ATAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATTCTACCCTTATATGGTG
Found at i:98422920 original size:18 final size:18
Alignment explanation
Indices: 98422897--98422931 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
98422887 GGACTTGCAT
98422897 ACTGTTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
*
98422915 ACTGTTTATTGTTACTG
1 ACTGTTTACTGTTACTG
98422932 TAATGGGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:98426280 original size:27 final size:27
Alignment explanation
Indices: 98426239--98426370 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 27
98426229 CCCAAATTGA
*
98426239 TAAAATGATTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
98426266 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
98426293 TAAAATGACCGTTTTGCCC-T-TGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * * *
98426318 TAAAATTACTATTTTGCCCTTATATGT
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
98426345 TAAGATGGCTGTTTTGCCCATATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
98426371 ATGTATCTTT
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
25 20 0.23
26 2 0.02
27 64 0.74
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:98426332 original size:52 final size:54
Alignment explanation
Indices: 98426239--98426370 Score: 187
Period size: 52 Copynumber: 2.5 Consensus size: 54
98426229 CCCAAATTGA
*
98426239 TAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGG
* * *
98426293 TAAAATGACCGTTTTGCCC-T-TGTGGTAAAATTACTATTTTGCCCTTATATGT
1 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGG
* * *
98426345 TAAGATGGCTGTTTTGCCCATATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
98426371 ATGTATCTTT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
52 46 0.67
53 2 0.03
54 21 0.30
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (54 bp):
TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATATGG
Found at i:98428945 original size:6 final size:6
Alignment explanation
Indices: 98428934--98428967 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
98428924 TAAACATGTT
*
98428934 CATTCC CATTCC TATTCC CATTCC CATTCC CATT
1 CATTCC CATTCC CATTCC CATTCC CATTCC CATT
98428968 ACCACATCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.44, G:0.00, T:0.38
Consensus pattern (6 bp):
CATTCC
Found at i:98436683 original size:18 final size:17
Alignment explanation
Indices: 98436650--98436682 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
98436640 ATTTTCCAAA
98436650 TTTATAAAGAAAAAAAT
1 TTTATAAAGAAAAAAAT
98436667 TTTATAAAGAAAAAAA
1 TTTATAAAGAAAAAAA
98436683 ACCATGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (17 bp):
TTTATAAAGAAAAAAAT
Found at i:98437397 original size:23 final size:23
Alignment explanation
Indices: 98437370--98437428 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 23
98437360 TAATAAAATA
*
98437370 GCTCTTTTTCTGTCTTTTGGCAC
1 GCTCTTTTTCTGTCTTTTGACAC
*
98437393 GCTCTTTCTCTGTCTTTTGACAC
1 GCTCTTTTTCTGTCTTTTGACAC
98437416 GCTCTTTCTTCTG
1 GCTCTTT-TTCTG
98437429 GCATAGATCG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 28 0.88
24 4 0.12
ACGTcount: A:0.05, C:0.29, G:0.15, T:0.51
Consensus pattern (23 bp):
GCTCTTTTTCTGTCTTTTGACAC
Found at i:98441514 original size:17 final size:17
Alignment explanation
Indices: 98441492--98441525 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98441482 TCTACTGAAA
*
98441492 GGGTGGCTGTTTTAATT
1 GGGTGGCTGATTTAATT
98441509 GGGTGGCTGATTTAATT
1 GGGTGGCTGATTTAATT
98441526 CTGAATGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.35, T:0.44
Consensus pattern (17 bp):
GGGTGGCTGATTTAATT
Found at i:98446293 original size:34 final size:34
Alignment explanation
Indices: 98446255--98446322 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
98446245 TCAGTCAAAT
* *
98446255 GCAGTTTGGGCCTAAGCCCATTTTAGTTTCAGTA
1 GCAGTTTGAGCCTAAGCCCATTTCAGTTTCAGTA
* *
98446289 GCAGTTTGAGCCTTAGCCCATTTCGGTTTCAGTA
1 GCAGTTTGAGCCTAAGCCCATTTCAGTTTCAGTA
98446323 TCAGATATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (34 bp):
GCAGTTTGAGCCTAAGCCCATTTCAGTTTCAGTA
Found at i:98450418 original size:47 final size:46
Alignment explanation
Indices: 98450341--98450639 Score: 234
Period size: 47 Copynumber: 6.4 Consensus size: 46
98450331 ATGTCATATT
*
98450341 CCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTCGATGCCATGTC
1 CCAGACATGGTCTTACACTGACT-ATCATCTCAAGTCGATG-CATGTC
* * * * *
98450388 CCAAACATGGTCTTACATTGACTATCATCTCGTAGCCGATGTATGTC
1 CCAGACATGGTCTTACACTGACTATCATCTC-AAGTCGATGCATGTC
* *
98450435 TCAGACATGGTCTTACACTGACTATCATCTCGTAGTCGATGCATGTC
1 CCAGACATGGTCTTACACTGACTATCATCTC-AAGTCGATGCATGTC
* * * * * *
98450482 CTAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGCTAATGCATGTC
1 CCAGACATGGTCTTACACTGACTAT-CATCTCAAGTC-GATGCATGTC
* * *
98450528 CTAGACAT-GTCTTACACT-AGCTCTCGTCTCAA-TGCTGATGCCATGTC
1 CCAGACATGGTCTTACACTGA-CTATCATCTCAAGT-C-GATG-CATGTC
* * *** *
98450575 CCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCATGTC
1 CCAGACATGGTCTTACACTGACTATCAT-CTCAAGTCGATGCATGTC
*
98450622 CCAGACAT-GTCATACACT
1 CCAGACATGGTCTTACACT
98450640 AGTTCACATC
Statistics
Matches: 210, Mismatches: 30, Indels: 25
0.79 0.11 0.09
Matches are distributed among these distances:
45 4 0.02
46 70 0.33
47 106 0.50
48 27 0.13
49 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
CCAGACATGGTCTTACACTGACTATCATCTCAAGTCGATGCATGTC
Found at i:98450622 original size:94 final size:94
Alignment explanation
Indices: 98450343--98450641 Score: 287
Period size: 94 Copynumber: 3.2 Consensus size: 94
98450333 GTCATATTCC
* * *
98450343 AGACATGGTCTTACACTGGCTCAT-ATCTCAA-GTCGATGCCATGTCCCAAACATGGTCTTACAT
1 AGACATGGTCTTACACTAGCTC-TCATCTCAATGTCGATGCCATGTCCCAGACATGGTCTTACAC
* *
98450406 TGACTATCATCTCGTAGCCGATGTATGT-CT
65 TGACT-TCATCTCGTGGCCGATGCATGTCCT
* * *
98450436 CAGACATGGTCTTACACT-GACTATCATCTC-GTAGTCGATG-CATGTCCTAGACAT-GTCTTAC
1 -AGACATGGTCTTACACTAG-CTCTCATCTCAAT-GTCGATGCCATGTCCCAGACATGGTCTTAC
* * * **
98450497 ACTGGCTTACGTCTCGAGGCTAATGCATGTCCT
63 ACTGACTT-CATCTCGTGGCCGATGCATGTCCT
*
98450530 AGACAT-GTCTTACACTAGCTCTCGTCTCAATG-CTGATGCCATGTCCCAGACATGGTCTTACAC
1 AGACATGGTCTTACACTAGCTCTCATCTCAATGTC-GATGCCATGTCCCAGACATGGTCTTACAC
* *
98450593 TGACTCTCATAAT-GTGGCCGATGCATGTCCC
65 TGACT-TCAT-CTCGTGGCCGATGCATGTCCT
*
98450624 AGACAT-GTCATACACTAG
1 AGACATGGTCTTACACTAG
98450642 TTCACATCAA
Statistics
Matches: 168, Mismatches: 24, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
91 1 0.01
92 24 0.14
93 50 0.30
94 84 0.50
95 9 0.05
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (94 bp):
AGACATGGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGACATGGTCTTACACT
GACTTCATCTCGTGGCCGATGCATGTCCT
Found at i:98453963 original size:5 final size:5
Alignment explanation
Indices: 98453946--98454016 Score: 52
Period size: 5 Copynumber: 13.8 Consensus size: 5
98453936 CATTGCATGG
* * * * * *
98453946 TATGA TATAA TATGA TATAA TATGA TATGG TATGG TATGA TTTATAA TATGC
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA --TATGA TATGA
* *
98453998 TTTGA TATGA TAAGA TATG
1 TATGA TATGA TATGA TATG
98454017 TTCCGATATA
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
5 46 0.92
7 4 0.08
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.42
Consensus pattern (5 bp):
TATGA
Found at i:98456567 original size:87 final size:87
Alignment explanation
Indices: 98456407--98456604 Score: 234
Period size: 87 Copynumber: 2.3 Consensus size: 87
98456397 CGGACACTTC
* * * * * *
98456407 AATTTGTGGATGAACCATCAGTGTTTGCAGATAAACTACCAGTAGGTTGTGAATACACAACGTGT
1 AATTCGTGGATGAACCATTAGTGTTTGCAGATAAACTACCAGTAGATTATGAATACACAACATGC
* * **
98456472 TTGTAGATAAAAGTTGTCAGTA
66 TTGCAGATAAAAGCTACCAGTA
* ** * * *
98456494 AGTTTTTGGATGAACCATTAGTGTTTGCATATAAACTGCCAGTAGATTATGAGTACACAACATGC
1 AATTCGTGGATGAACCATTAGTGTTTGCAGATAAACTACCAGTAGATTATGAATACACAACATGC
*
98456559 TTGCAGATAAGAGCTACCAGTA
66 TTGCAGATAAAAGCTACCAGTA
*
98456581 AATTCGTGGATAAACCATTAGTGT
1 AATTCGTGGATGAACCATTAGTGT
98456605 CACAAATTAT
Statistics
Matches: 92, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (87 bp):
AATTCGTGGATGAACCATTAGTGTTTGCAGATAAACTACCAGTAGATTATGAATACACAACATGC
TTGCAGATAAAAGCTACCAGTA
Found at i:98460304 original size:32 final size:32
Alignment explanation
Indices: 98460268--98460341 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
98460258 TTTAAAACAT
* *
98460268 TTTTAAAATATGTATATTATTATTAATATTTA
1 TTTTAAAATATGTATATTATTAATAATACTTA
* *
98460300 TTTTAAAATATTTATATTATTAATAGTACTTA
1 TTTTAAAATATGTATATTATTAATAATACTTA
*
98460332 ATTTAAAATA
1 TTTTAAAATA
98460342 ATAAAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (32 bp):
TTTTAAAATATGTATATTATTAATAATACTTA
Found at i:98462045 original size:25 final size:25
Alignment explanation
Indices: 98462011--98462064 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
98462001 TAAATTTCTC
98462011 AAAACATTTCATAGAGTTCAATCTT
1 AAAACATTTCATAGAGTTCAATCTT
98462036 AAAACATTTCATAGAGTTCAATCTT
1 AAAACATTTCATAGAGTTCAATCTT
98462061 AAAA
1 AAAA
98462065 GTAATAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (25 bp):
AAAACATTTCATAGAGTTCAATCTT
Found at i:98463508 original size:15 final size:17
Alignment explanation
Indices: 98463490--98463522 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
98463480 CTATTTTCTC
98463490 TTTC-TCTTTTA-TTTT
1 TTTCTTCTTTTACTTTT
98463505 TTTCTTCTTTTACTTTT
1 TTTCTTCTTTTACTTTT
98463522 T
1 T
98463523 CAAAATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 7 0.44
17 5 0.31
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTTCTTTTACTTTT
Found at i:98464009 original size:37 final size:37
Alignment explanation
Indices: 98463959--98464032 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
98463949 CAGGTGTATG
* *
98463959 CCAAAAACCCCATTTTTTGCAAATTTTAGTCGCTAGA
1 CCAAAAACCCCATTTTTTGCAAATTTCAGTCACTAGA
98463996 CCAAAAACCCCATTTTTTGCAAATTTCAGTCACTAGA
1 CCAAAAACCCCATTTTTTGCAAATTTCAGTCACTAGA
98464033 AAACATGGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (37 bp):
CCAAAAACCCCATTTTTTGCAAATTTCAGTCACTAGA
Found at i:98466929 original size:42 final size:42
Alignment explanation
Indices: 98466882--98466966 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
98466872 ACATATATAG
98466882 TGATACGAATTCAGATTAT-TCTCATAAAATACAAAACACACT
1 TGATACGAATTCAGATTATGT-TCATAAAATACAAAACACACT
98466924 TGATACGAATTCAGATTATGTTCATAAAATACAAAACACACT
1 TGATACGAATTCAGATTATGTTCATAAAATACAAAACACACT
98466966 T
1 T
98466967 ACTTATTCGA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (42 bp):
TGATACGAATTCAGATTATGTTCATAAAATACAAAACACACT
Found at i:98467404 original size:63 final size:63
Alignment explanation
Indices: 98467330--98467528 Score: 211
Period size: 63 Copynumber: 3.2 Consensus size: 63
98467320 ACAGTCTCTC
* * * * * *
98467330 ACACGACCTAAACATACGTCTATGCCTCTAGCTTGTGTGACTCTAATTCCGAAACAGTGAGTT
1 ACACGGCCTAAACACACGTCTGTGTCTCTAGCCTGTGTGACTCTAATTCCAAAACAGTGAGTT
* * * * ** *
98467393 ACACTGCCTAAATACACG-CTCGTGTCTCTGGCCCGTGTGACTCTAATTTTAAAATAGTGAGTT
1 ACACGGCCTAAACACACGTCT-GTGTCTCTAGCCTGTGTGACTCTAATTCCAAAACAGTGAGTT
* * * * *
98467456 ACACGGCTTAGACACACGTCCGTGTCTCTAGCCTATGTGACTCTAATTCCAAAACAGCGAGTT
1 ACACGGCCTAAACACACGTCTGTGTCTCTAGCCTGTGTGACTCTAATTCCAAAACAGTGAGTT
*
98467519 ACATGGCCTA
1 ACACGGCCTA
98467529 CCATACAGCC
Statistics
Matches: 107, Mismatches: 27, Indels: 4
0.78 0.20 0.03
Matches are distributed among these distances:
62 2 0.02
63 104 0.97
64 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (63 bp):
ACACGGCCTAAACACACGTCTGTGTCTCTAGCCTGTGTGACTCTAATTCCAAAACAGTGAGTT
Found at i:98468502 original size:26 final size:26
Alignment explanation
Indices: 98468466--98468520 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
98468456 GCAGAAGTTC
98468466 AAATTTTTGGGGCTTTATACTTTTGG
1 AAATTTTTGGGGCTTTATACTTTTGG
98468492 AAATTTTTGGGGCTTTATACTTTTGG
1 AAATTTTTGGGGCTTTATACTTTTGG
98468518 AAA
1 AAA
98468521 GAGGTTGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.47
Consensus pattern (26 bp):
AAATTTTTGGGGCTTTATACTTTTGG
Found at i:98470811 original size:49 final size:49
Alignment explanation
Indices: 98470744--98470851 Score: 180
Period size: 49 Copynumber: 2.2 Consensus size: 49
98470734 TGGGCCAGGT
*
98470744 CATGTGGGCCACACGGGTGAAGCCAATTTGGGCATGTGAGCCAAATGGG
1 CATGTGGGCCACACGGGTGAAGCCAATTTGGGCATGTGAGCCAAACGGG
* *
98470793 CATGTGGGCTACACGGGTGAAGCCAATTTGGGCATGTGGGCCAAACGGG
1 CATGTGGGCCACACGGGTGAAGCCAATTTGGGCATGTGAGCCAAACGGG
*
98470842 TATGTGGGCC
1 CATGTGGGCC
98470852 CAAAATTCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.22, C:0.20, G:0.38, T:0.19
Consensus pattern (49 bp):
CATGTGGGCCACACGGGTGAAGCCAATTTGGGCATGTGAGCCAAACGGG
Found at i:98474239 original size:18 final size:19
Alignment explanation
Indices: 98474199--98474243 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
98474189 TAATCTCTTA
* *
98474199 AATTTTTTTCCTAAATTCT
1 AATTTTTATCCTAAATTAT
98474218 -ATTTTTAT-CTAAATTAT
1 AATTTTTATCCTAAATTAT
98474235 AATTTTTAT
1 AATTTTTAT
98474244 TAGTATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (19 bp):
AATTTTTATCCTAAATTAT
Found at i:98474251 original size:12 final size:12
Alignment explanation
Indices: 98474236--98474265 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
98474226 CTAAATTATA
98474236 ATTTTTATTAGT
1 ATTTTTATTAGT
98474248 A-TTTTATTAGT
1 ATTTTTATTAGT
98474259 ATTTTTA
1 ATTTTTA
98474266 ACAAATAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
ATTTTTATTAGT
Found at i:98476398 original size:32 final size:32
Alignment explanation
Indices: 98476332--98476394 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
98476322 CCATAATTAA
*
98476332 TAAACACTTAAAAATAAATAAAACCCTAAACC
1 TAAACACTTAAAAATAAATAAAACCATAAACC
* * *
98476364 TAAACACTTACAAATTAA-AAAACTATAAACC
1 TAAACACTTAAAAATAAATAAAACCATAAACC
98476395 CTAATTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (32 bp):
TAAACACTTAAAAATAAATAAAACCATAAACC
Found at i:98476738 original size:6 final size:6
Alignment explanation
Indices: 98476727--98476754 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
98476717 GACAGTTAAA
98476727 AATTTT AATTTT AATTTT AATTTT AATT
1 AATTTT AATTTT AATTTT AATTTT AATT
98476755 CATAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:98476818 original size:36 final size:37
Alignment explanation
Indices: 98476737--98476818 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 37
98476727 AATTTTAATT
* *
98476737 TTAATTTTAATTTTAATTCATAAAAATATTTAAAACA
1 TTAATTTTAATTTTAATTCACAAAAATATTTAAAAAA
* *
98476774 TT-CTTTTAATTTTAATTGACAAAAA-ATTTAAAAAA
1 TTAATTTTAATTTTAATTCACAAAAATATTTAAAAAA
*
98476809 TTAAATTTAA
1 TTAATTTTAA
98476819 AAGCAGCTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 11 0.29
36 25 0.66
37 2 0.05
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (37 bp):
TTAATTTTAATTTTAATTCACAAAAATATTTAAAAAA
Found at i:98476996 original size:3 final size:3
Alignment explanation
Indices: 98476988--98477015 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
98476978 TTCCATTTCT
98476988 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
98477016 GGAATTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:98496206 original size:140 final size:140
Alignment explanation
Indices: 98495809--98496274 Score: 688
Period size: 140 Copynumber: 3.3 Consensus size: 140
98495799 TTGCTCTCCC
* *
98495809 ACTCACATTTGTATTTTTTATTTCATGTTGCTTTAAGCTTTTTAATTTTTTAATTAATGTTTTTT
1 ACTCACATTTGTATTTTTTATTTCATGTTGCTTCAAGCTTTTTAAATTTTTAATTAATGTTTTTT
* * *
98495874 AACATATTAGTTTTTTCGTTACATTG-TTAGATAGTTGTAATTACATCCTTGAGTCTCAAGCTGG
66 AACATATTAGTTTTTTCGTTAGA-TGATTAGATAGTTGTAATTACATCCTTGAGTCTCGAGTTGG
98495938 A-TTCATCTACT
130 ATTTC-TCTACT
*
98495949 ACTCACATTTGTATTTTTTGTTTCATGTTGCTTCAAGCTTTTTAAA-TTTTAATTAAT-TTTTTT
1 ACTCACATTTGTATTTTTTATTTCATGTTGCTTCAAGCTTTTTAAATTTTTAATTAATGTTTTTT
* * ** * *
98496012 AACATATTAGTTCTTTGGTTAGATGATTAGATAGTTGTTGTTACATCTTTGAGTCTCGAGTTTGA
66 AACATATTAGTTTTTTCGTTAGATGATTAGATAGTTGTAATTACATCCTTGAGTCTCGAGTTGGA
*
98496077 TTTCTCTCCT
131 TTTCTCTACT
* *
98496087 ACTCAAATTTGTATTTTTTATTTCATGTTGCTTGAAGCTTTTTAAATTTTTAATTAATGTTTTTT
1 ACTCACATTTGTATTTTTTATTTCATGTTGCTTCAAGCTTTTTAAATTTTTAATTAATGTTTTTT
* *
98496152 AACATATTAGTTTTTTCGTTAGGTGATTACATAGTTGTAATTACATCCTTGAGTCTCGAGTTGGA
66 AACATATTAGTTTTTTCGTTAGATGATTAGATAGTTGTAATTACATCCTTGAGTCTCGAGTTGGA
*
98496217 TTCCTCTACT
131 TTTCTCTACT
** * *
98496227 ACTCACATTTGTATTTTTCGTTTCATGTTGCTTCAAGATTTTTTAATT
1 ACTCACATTTGTATTTTTTATTTCATGTTGCTTCAAGCTTTTTAAATT
98496275 ATTTTGTAAC
Statistics
Matches: 290, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
137 2 0.01
138 107 0.37
139 25 0.09
140 156 0.54
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.52
Consensus pattern (140 bp):
ACTCACATTTGTATTTTTTATTTCATGTTGCTTCAAGCTTTTTAAATTTTTAATTAATGTTTTTT
AACATATTAGTTTTTTCGTTAGATGATTAGATAGTTGTAATTACATCCTTGAGTCTCGAGTTGGA
TTTCTCTACT
Found at i:98497244 original size:18 final size:18
Alignment explanation
Indices: 98497221--98497263 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
98497211 CGTATAGAGG
98497221 CCGTGTGGTGATACACGA
1 CCGTGTGGTGATACACGA
98497239 CCGTGTGGTGATACACGA
1 CCGTGTGGTGATACACGA
98497257 CCGTGTG
1 CCGTGTG
98497264 TTCGATGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.35, T:0.23
Consensus pattern (18 bp):
CCGTGTGGTGATACACGA
Found at i:98504995 original size:40 final size:40
Alignment explanation
Indices: 98504940--98505016 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
98504930 ACAGTACCTT
*
98504940 TTGGTGTGTAGGGTTGGATGGGTTGATTATATCCCCATAC
1 TTGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATAC
* *
98504980 TTGGTGTGTAGGGTTGGGTGGGTCGATTCTATCCCCA
1 TTGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCA
98505017 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.14, C:0.14, G:0.35, T:0.36
Consensus pattern (40 bp):
TTGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATAC
Found at i:98505803 original size:22 final size:20
Alignment explanation
Indices: 98505766--98505807 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
98505756 ATGATATTTT
98505766 TTAATTATTTTCATTTTTAA
1 TTAATTATTTTCATTTTTAA
*
98505786 TTAATGTATTTTTTATTTTTAA
1 TTAAT-TA-TTTTCATTTTTAA
98505808 CTCTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (20 bp):
TTAATTATTTTCATTTTTAA
Found at i:98508397 original size:3 final size:3
Alignment explanation
Indices: 98508389--98508420 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
98508379 TCATGTATTT
98508389 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AC
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA AC
98508421 CACCTCTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.34, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:98512037 original size:24 final size:24
Alignment explanation
Indices: 98512005--98512051 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
98511995 GCCTATATAG
*
98512005 TCAAGGATCATATAGCACTACTAT
1 TCAAAGATCATATAGCACTACTAT
*
98512029 TCAAAGATCATATATCACTACTA
1 TCAAAGATCATATAGCACTACTA
98512052 ATCAGGCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (24 bp):
TCAAAGATCATATAGCACTACTAT
Found at i:98517132 original size:34 final size:35
Alignment explanation
Indices: 98517076--98517142 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
98517066 CAAACACCAG
* *
98517076 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
98517111 AAAACATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
98517143 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:98517134 original size:14 final size:14
Alignment explanation
Indices: 98517111--98517150 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
98517101 ACAGAAAAGT
*
98517111 AAAACATTTTTCAG
1 AAAACATTTTACAG
* *
98517125 AAATCATTTTACGG
1 AAAACATTTTACAG
98517139 AAAACATTTTAC
1 AAAACATTTTAC
98517151 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:98521765 original size:22 final size:21
Alignment explanation
Indices: 98521732--98521776 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
98521722 AGAACAATCT
*
98521732 GCCAAGGATGTCACGACACAG
1 GCCAAGGATGTCACAACACAG
* *
98521753 GCCAGAGGGTGTCGCAACACAG
1 GCCA-AGGATGTCACAACACAG
98521775 GC
1 GC
98521777 TTGAAGACAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.29, C:0.29, G:0.33, T:0.09
Consensus pattern (21 bp):
GCCAAGGATGTCACAACACAG
Found at i:98529924 original size:49 final size:48
Alignment explanation
Indices: 98529679--98530044 Score: 238
Period size: 49 Copynumber: 7.8 Consensus size: 48
98529669 TACGTGTGCT
* * * *
98529679 AGTGTAAGGCATGTTTGGGACAT-GCATCGGCCA-C-ATTATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATC-GACATCGATAATGAGAGCC
* * ** * * *
98529725 AGTGTAAGACATGTCTGGGACAT-GCATCGGGATTGA-GACGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATAATGAGAGCC
* * * * * * *
98529771 AGTATAAGTA-ATGTTTGGGAGAT-GCATCGGCCTCGAGATATGCA-AGCT
1 AGTGTAAG-ACCTGTTTGGGACATGGCATCGACATCGATA-ATG-AGAGCC
* * * * *
98529819 AGTGTAAGACCTGTCTGGGACATGGCATC-AGC-TTGA-CAT--GTGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGA-CATCGATAATGAGAGCC
*
98529863 AGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATA-ATGAGAGCC
* * * * *
98529912 AGTGTAAGACCTGTTTGGGATATGGCATTGGCATCGATATATGAAAGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATA-ATGAGAGCC
* * * * * *
98529961 AGTGTAAGACCTGTCTAGGACATGGCATCGACTTAGAT-ATGTGAGCT
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATAATGAGAGCC
*
98530008 AGTGTAAGACCATGTTTGGAACATGGCATCGACATCG
1 AGTGTAAGACC-TGTTTGGGACATGGCATCGACATCG
98530045 TACCCTACGT
Statistics
Matches: 248, Mismatches: 55, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
44 30 0.12
45 5 0.02
46 64 0.26
47 21 0.08
48 45 0.18
49 83 0.33
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATAATGAGAGCC
Found at i:98529982 original size:142 final size:145
Alignment explanation
Indices: 98529764--98530041 Score: 372
Period size: 142 Copynumber: 1.9 Consensus size: 145
98529754 GGATTGAGAC
* *
98529764 GAGAGCCAGTATAAGTAATGTTTGGGAGATGCATCGGCCTCGAGATATGCAAGCTAGTGTAAGAC
1 GAGAGCCAGTATAAGTAATGTTTGGGAGATGCATCGGCATCGAGATATGAAAGCTAGTGTAAGAC
* * *
98529829 CTGTCTGGGACATGGCATC-AGCTT-GACATGTG-TC-AGTGTAAGACC-TGTTTGGGACATGGC
66 CTGTCTAGGACATGGCATCGA-CTTAGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGC
98529889 ATCGACACCGATAGAT
130 ATCGACACCGATAGAT
* * * * *
98529905 GAGAGCCAGTGTAAG-ACCTGTTTGGGATATGGCATTGGCATCGATATATGAAAG-TCAGTGTAA
1 GAGAGCCAGTATAAGTA-ATGTTTGGGAGAT-GCATCGGCATCGAGATATGAAAGCT-AGTGTAA
*
98529968 GACCTGTCTAGGACATGGCATCGACTTAGATATGTGAGCTAGTGTAAGACCATGTTTGGAACATG
63 GACCTGTCTAGGACATGGCATCGACTTAGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATG
98530033 GCATCGACA
128 GCATCGACA
98530042 TCGTACCCTA
Statistics
Matches: 118, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
140 1 0.01
141 26 0.22
142 50 0.42
143 8 0.07
144 1 0.01
145 11 0.09
146 21 0.18
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (145 bp):
GAGAGCCAGTATAAGTAATGTTTGGGAGATGCATCGGCATCGAGATATGAAAGCTAGTGTAAGAC
CTGTCTAGGACATGGCATCGACTTAGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCA
TCGACACCGATAGAT
Found at i:98530075 original size:37 final size:37
Alignment explanation
Indices: 98530025--98530098 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
98530015 GACCATGTTT
98530025 GGAACATGGCATCGACATCGTACCCTACGTTTGAGGC
1 GGAACATGGCATCGACATCGTACCCTACGTTTGAGGC
* *
98530062 GGAACATGGCATCGGCATCGTACCCTATGTTTGAGGC
1 GGAACATGGCATCGACATCGTACCCTACGTTTGAGGC
98530099 TTAGTGATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (37 bp):
GGAACATGGCATCGACATCGTACCCTACGTTTGAGGC
Found at i:98532334 original size:40 final size:40
Alignment explanation
Indices: 98532267--98532345 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
98532257 CGTAGATGCA
* * **
98532267 GAACAGGGGCACATATGTGCAGTCAAGAGA-ACCAAAGTGC
1 GAACAGGGGCACATACGTACAAACAAGA-ACACCAAAGTGC
98532307 GAACAGGGGCACATACGTACAAACAAGAACACCAAAGTG
1 GAACAGGGGCACATACGTACAAACAAGAACACCAAAGTG
98532346 TATATAGGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.42, C:0.22, G:0.27, T:0.10
Consensus pattern (40 bp):
GAACAGGGGCACATACGTACAAACAAGAACACCAAAGTGC
Found at i:98532446 original size:20 final size:19
Alignment explanation
Indices: 98532409--98532458 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
98532399 TGGAGTGTAT
98532409 ACAGGGGCACCAAAGTGCAA
1 ACAGGGGCA-CAAAGTGCAA
*
98532429 ACAGGGGCACAATTGTGCAA
1 ACAGGGGCACAA-AGTGCAA
98532449 A-ATGGGGCAC
1 ACA-GGGGCAC
98532459 TTCTTCATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.36, C:0.22, G:0.32, T:0.10
Consensus pattern (19 bp):
ACAGGGGCACAAAGTGCAA
Found at i:98543733 original size:25 final size:24
Alignment explanation
Indices: 98543674--98543733 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 24
98543664 GTACATGTAT
*
98543674 GCTCATATGAGCTATAAAAGGTAA
1 GCTCATATGAGCTACAAAAGGTAA
* * * *
98543698 GGTCCTCTGAGCTACATAACGGTAA
1 GCTCATATGAGCTACA-AAAGGTAA
98543723 GCTCATATGAG
1 GCTCATATGAG
98543734 TTGAGTATCG
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (24 bp):
GCTCATATGAGCTACAAAAGGTAA
Found at i:98544642 original size:23 final size:19
Alignment explanation
Indices: 98544589--98544626 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
98544579 ATGAAAGATG
98544589 ATAGCTTTAATTTTTTGAT
1 ATAGCTTTAATTTTTTGAT
98544608 ATAGCTTTAATTTTTTGAT
1 ATAGCTTTAATTTTTTGAT
98544627 TATTTTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (19 bp):
ATAGCTTTAATTTTTTGAT
Found at i:98545594 original size:18 final size:19
Alignment explanation
Indices: 98545573--98545614 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
98545563 TTCCAAATTT
98545573 TTTTATAATTATTAACT-A
1 TTTTATAATTATTAACTAA
* *
98545591 TTTTA-AGTTATTTACTAA
1 TTTTATAATTATTAACTAA
98545609 TTTTAT
1 TTTTAT
98545615 GTCAACAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTATAATTATTAACTAA
Found at i:98549174 original size:21 final size:22
Alignment explanation
Indices: 98549148--98549188 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
98549138 CTCTTAACAT
98549148 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
98549169 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
98549189 ACATTTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.29, G:0.44, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Done.