Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 299 of 310
Found at i:98552229 original size:22 final size:22
Alignment explanation
Indices: 98552203--98552251 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
98552193 TCCAAATCAG
98552203 ATAAAATAATTAAAAT-GAATA
1 ATAAAATAATTAAAATAGAATA
98552224 ACTAAAATAATTAAAATAGAATA
1 A-TAAAATAATTAAAATAGAATA
98552247 ATAAA
1 ATAAA
98552252 TCTACGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.73
23 6 0.23
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (22 bp):
ATAAAATAATTAAAATAGAATA
Found at i:98560500 original size:17 final size:17
Alignment explanation
Indices: 98560475--98560529 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
98560465 TTTTTATCAT
*
98560475 TTATTATTTATCAGGCA
1 TTATCATTTATCAGGCA
*
98560492 TTATCATTTATTTCAGGTA
1 TTATCATTTA--TCAGGCA
*
98560511 TTATCATTTATCGGGCA
1 TTATCATTTATCAGGCA
98560528 TT
1 TT
98560530 GTCGAATATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 16 0.50
19 16 0.50
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (17 bp):
TTATCATTTATCAGGCA
Found at i:98560513 original size:19 final size:19
Alignment explanation
Indices: 98560485--98560521 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
98560475 TTATTATTTA
98560485 TCAGGCATTATCATTTATT
1 TCAGGCATTATCATTTATT
*
98560504 TCAGGTATTATCATTTAT
1 TCAGGCATTATCATTTAT
98560522 CGGGCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.49
Consensus pattern (19 bp):
TCAGGCATTATCATTTATT
Found at i:98562151 original size:35 final size:35
Alignment explanation
Indices: 98562093--98562172 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
98562083 TGATTTGTAC
* * *
98562093 ATCTGTATCTGTATCTGAGATGGGCTTAGGCCCGA
1 ATCTGTATCTATATCCGAGATGGGCTTAAGCCCGA
98562128 ATCTGTATCTATATCCGTA-ATGGGCTTAAGCCCGA
1 ATCTGTATCTATATCCG-AGATGGGCTTAAGCCCGA
*
98562163 ATCTGCATCT
1 ATCTGTATCT
98562173 GTGTCTGACT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
35 39 0.98
36 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.33
Consensus pattern (35 bp):
ATCTGTATCTATATCCGAGATGGGCTTAAGCCCGA
Found at i:98563975 original size:17 final size:17
Alignment explanation
Indices: 98563950--98564004 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
98563940 TTTTTATCAT
*
98563950 TTATTATTTATCAGGCA
1 TTATCATTTATCAGGCA
*
98563967 TTATCATTTATTTCAGGTA
1 TTATCATTTA--TCAGGCA
*
98563986 TTATCATTTATCGGGCA
1 TTATCATTTATCAGGCA
98564003 TT
1 TT
98564005 GTCGAATATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 16 0.50
19 16 0.50
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (17 bp):
TTATCATTTATCAGGCA
Found at i:98563988 original size:19 final size:19
Alignment explanation
Indices: 98563960--98563996 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
98563950 TTATTATTTA
98563960 TCAGGCATTATCATTTATT
1 TCAGGCATTATCATTTATT
*
98563979 TCAGGTATTATCATTTAT
1 TCAGGCATTATCATTTAT
98563997 CGGGCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.49
Consensus pattern (19 bp):
TCAGGCATTATCATTTATT
Found at i:98565626 original size:35 final size:35
Alignment explanation
Indices: 98565568--98565647 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
98565558 TGATTTGTAC
* * *
98565568 ATCTGTATCTGTATCTGAGATGGGCTTAGGCCCGA
1 ATCTGTATCTATATCCGAGATGGGCTTAAGCCCGA
98565603 ATCTGTATCTATATCCGTA-ATGGGCTTAAGCCCGA
1 ATCTGTATCTATATCCG-AGATGGGCTTAAGCCCGA
*
98565638 ATCTGCATCT
1 ATCTGTATCT
98565648 GTGTCTGACT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
35 39 0.98
36 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.33
Consensus pattern (35 bp):
ATCTGTATCTATATCCGAGATGGGCTTAAGCCCGA
Found at i:98577904 original size:20 final size:20
Alignment explanation
Indices: 98577867--98577916 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
98577857 TCTTTATAAA
98577867 TATTTTAAA-TTTTAAAAAT
1 TATTTTAAATTTTTAAAAAT
*
98577886 TATTTTAAATTTTTGAAAAT
1 TATTTTAAATTTTTAAAAAT
*
98577906 TATTTTGAATT
1 TATTTTAAATT
98577917 ATTTTGTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (20 bp):
TATTTTAAATTTTTAAAAAT
Found at i:98579050 original size:25 final size:25
Alignment explanation
Indices: 98579019--98579071 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
98579009 AATAGAATAA
98579019 CCTCAATGAAAAACATACTTCGCCT
1 CCTCAATGAAAAACATACTTCGCCT
98579044 CCTCAATGAAAAACATACTTCGCCT
1 CCTCAATGAAAAACATACTTCGCCT
98579069 CCT
1 CCT
98579072 ATTATATCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.34, G:0.08, T:0.25
Consensus pattern (25 bp):
CCTCAATGAAAAACATACTTCGCCT
Found at i:98581659 original size:52 final size:52
Alignment explanation
Indices: 98581581--98581683 Score: 206
Period size: 52 Copynumber: 2.0 Consensus size: 52
98581571 GGAAGACGAT
98581581 CAGTCTAGATACCCAACACCACATTTAAAAGGGAAAAACAAAGATAACAATA
1 CAGTCTAGATACCCAACACCACATTTAAAAGGGAAAAACAAAGATAACAATA
98581633 CAGTCTAGATACCCAACACCACATTTAAAAGGGAAAAACAAAGATAACAAT
1 CAGTCTAGATACCCAACACCACATTTAAAAGGGAAAAACAAAGATAACAAT
98581684 CCGTTTATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.51, C:0.21, G:0.12, T:0.16
Consensus pattern (52 bp):
CAGTCTAGATACCCAACACCACATTTAAAAGGGAAAAACAAAGATAACAATA
Found at i:98581769 original size:63 final size:62
Alignment explanation
Indices: 98581676--98581806 Score: 253
Period size: 63 Copynumber: 2.1 Consensus size: 62
98581666 AAAAACAAAG
98581676 ATAACAATCCGTTTATAATGACTTTTCCATAATTAGTTACTACAAAATATGCTACTCAAAACA
1 ATAACAATCCGTTTATAATGACTTTTCCATAATTAG-TACTACAAAATATGCTACTCAAAACA
98581739 ATAACAATCCGTTTATAATGACTTTTCCATAATTAGTACTACAAAATATGCTACTCAAAACA
1 ATAACAATCCGTTTATAATGACTTTTCCATAATTAGTACTACAAAATATGCTACTCAAAACA
98581801 ATAACA
1 ATAACA
98581807 TTCGAACATG
Statistics
Matches: 68, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 32 0.47
63 36 0.53
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.32
Consensus pattern (62 bp):
ATAACAATCCGTTTATAATGACTTTTCCATAATTAGTACTACAAAATATGCTACTCAAAACA
Found at i:98585079 original size:31 final size:30
Alignment explanation
Indices: 98585017--98585080 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
98585007 TAAGGGACTT
* ** *
98585017 ATCCCTTTAAAAATGAAAAATTTTAATTTA
1 ATCCCTTTAAAAATAAAAAATTACAAATTA
98585047 ATCCCTTTAAAAATAATAAAATTACAAATTA
1 ATCCCTTTAAAAATAA-AAAATTACAAATTA
98585078 ATC
1 ATC
98585081 TATAGTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.36
Consensus pattern (30 bp):
ATCCCTTTAAAAATAAAAAATTACAAATTA
Found at i:98585869 original size:20 final size:19
Alignment explanation
Indices: 98585827--98585878 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
98585817 TTAAAAATAA
98585827 TTTAACTTTGATTGAAAATT
1 TTTAAC-TTGATTGAAAATT
98585847 TTTAACTTGATTGAAACCA-T
1 TTTAACTTGATTGAAA--ATT
98585867 TTTAACTTGATT
1 TTTAACTTGATT
98585879 TAAATGCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.33
20 19 0.63
21 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (19 bp):
TTTAACTTGATTGAAAATT
Found at i:98587154 original size:24 final size:24
Alignment explanation
Indices: 98587122--98587169 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
98587112 TTTATAGGAC
98587122 AAAAATTCTAAGTAATGATAAGAT
1 AAAAATTCTAAGTAATGATAAGAT
98587146 AAAAATTCTAAGTAATGATAAGAT
1 AAAAATTCTAAGTAATGATAAGAT
98587170 GGAGAACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.04, G:0.12, T:0.29
Consensus pattern (24 bp):
AAAAATTCTAAGTAATGATAAGAT
Found at i:98591052 original size:20 final size:20
Alignment explanation
Indices: 98591029--98591076 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
98591019 TTTAAGAGGG
98591029 TATCGATAATTTTATAAAT-A
1 TATCGATAATTTTA-AAATGA
*
98591049 TATCGATAATTTTAAAATGG
1 TATCGATAATTTTAAAATGA
98591069 TATCGATA
1 TATCGATA
98591077 CCAAATCACG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (20 bp):
TATCGATAATTTTAAAATGA
Found at i:98593287 original size:19 final size:19
Alignment explanation
Indices: 98593256--98593307 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
98593246 TTAAAAATAG
98593256 TTTAACTTTGATTGAAA-AT
1 TTTAAC-TTGATTGAAACAT
98593275 TTCTAACTTGATTGAAACCAT
1 TT-TAACTTGATTGAAA-CAT
98593296 TTTAACTTGATT
1 TTTAACTTGATT
98593308 TAAAGGTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 12 0.40
20 14 0.47
21 4 0.13
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.46
Consensus pattern (19 bp):
TTTAACTTGATTGAAACAT
Found at i:98595298 original size:43 final size:43
Alignment explanation
Indices: 98595237--98595378 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
98595227 TTATTTAAAA
* *
98595237 AAACGTCACTAAAGACCATGACTTTTAGCGGCGCTTTTTTTAC
1 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTTTTAC
*
98595280 AAACGCCACTAAAGACCATGACCTTTAGCGACGCTTTTTTTAC
1 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTTTTAC
* * * ** * * *
98595323 AAATGCCGCTAAAGACTATGACCTTTAGAAGCGCTTTTCTCAA
1 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTTTTAC
*
98595366 AAACGCCGCTAAA
1 AAACGCCACTAAA
98595379 AATCATGAAT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTTTTAC
Found at i:98598648 original size:18 final size:18
Alignment explanation
Indices: 98598625--98598661 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
98598615 TATTGTTTAA
98598625 TTTTATTATTTTATTTTT
1 TTTTATTATTTTATTTTT
*
98598643 TTTTATTTTTTTATTTTT
1 TTTTATTATTTTATTTTT
98598661 T
1 T
98598662 CTTTCAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTTATTATTTTATTTTT
Found at i:98598660 original size:8 final size:8
Alignment explanation
Indices: 98598624--98598661 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
98598614 CTATTGTTTA
*
98598624 ATTTTATT
1 ATTTTTTT
*
98598632 ATTTTATT
1 ATTTTTTT
98598640 -TTTTTTT
1 ATTTTTTT
98598647 ATTTTTTT
1 ATTTTTTT
98598655 ATTTTTT
1 ATTTTTT
98598662 CTTTCAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
ATTTTTTT
Found at i:98598715 original size:12 final size:13
Alignment explanation
Indices: 98598691--98598715 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98598681 GAGATTATCA
98598691 TTTTTAAATTTTT
1 TTTTTAAATTTTT
98598704 TTTTTAAATTTT
1 TTTTTAAATTTT
98598716 GAATATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTAAATTTTT
Found at i:98598761 original size:7 final size:7
Alignment explanation
Indices: 98598749--98598776 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
98598739 ATATGGATTA
98598749 AAATATT
1 AAATATT
98598756 AAATATT
1 AAATATT
98598763 AAATATT
1 AAATATT
98598770 AAATATT
1 AAATATT
98598777 TAAGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:98598792 original size:8 final size:7
Alignment explanation
Indices: 98598781--98598836 Score: 76
Period size: 7 Copynumber: 7.7 Consensus size: 7
98598771 AATATTTAAG
98598781 TTTTTTA
1 TTTTTTA
98598788 TTTTTTA
1 TTTTTTA
98598795 TTTTTTA
1 TTTTTTA
98598802 TTTTTTA
1 TTTTTTA
*
98598809 TTTTTAAA
1 TTTTT-TA
*
98598817 TTTTTAAA
1 TTTTT-TA
98598825 TTTTTTA
1 TTTTTTA
98598832 TTTTT
1 TTTTT
98598837 AAATTTTCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
7 32 0.70
8 14 0.30
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTA
Found at i:98598842 original size:8 final size:8
Alignment explanation
Indices: 98598808--98598843 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
98598798 TTTATTTTTT
98598808 ATTTTTAA
1 ATTTTTAA
98598816 ATTTTTAA
1 ATTTTTAA
*
98598824 ATTTTT-T
1 ATTTTTAA
98598831 ATTTTTAA
1 ATTTTTAA
98598839 ATTTT
1 ATTTT
98598844 CACCATCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
ATTTTTAA
Found at i:98598843 original size:14 final size:14
Alignment explanation
Indices: 98598782--98598843 Score: 63
Period size: 14 Copynumber: 4.3 Consensus size: 14
98598772 ATATTTAAGT
* *
98598782 TTTTTATTTTTTAT
1 TTTTTATTTTTAAA
*
98598796 TTTTTATTTTT-TA
1 TTTTTATTTTTAAA
98598809 TTTTTAAATTTTTAAA
1 TTTTT--ATTTTTAAA
98598825 TTTTTTATTTTTAAA
1 -TTTTTATTTTTAAA
98598840 TTTT
1 TTTT
98598844 CACCATCAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 5 0.12
14 15 0.37
15 15 0.37
16 1 0.02
17 5 0.12
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTATTTTTAAA
Found at i:98599082 original size:24 final size:24
Alignment explanation
Indices: 98599054--98599102 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
98599044 CCAAAATAAC
98599054 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
98599078 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
98599102 A
1 A
98599103 TAAATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:98599105 original size:11 final size:12
Alignment explanation
Indices: 98599061--98599106 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
98599051 AACAATTAAT
98599061 TTTTATATAAAC
1 TTTTATATAAAC
* * *
98599073 TTTTAAATTAAT
1 TTTTATATAAAC
98599085 TTTTATATAAAC
1 TTTTATATAAAC
98599097 TTTTA-ATAAA
1 TTTTATATAAA
98599107 TATATGAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:98599760 original size:41 final size:40
Alignment explanation
Indices: 98599715--98599850 Score: 200
Period size: 41 Copynumber: 3.4 Consensus size: 40
98599705 TTATATAACT
* *
98599715 TTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAGTC
1 TTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCT-GTC
**
98599756 TTTAGCGGCGCTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCT-GTC
* *
98599797 TTTAGCAGCATTTTACCAAAAGCGCCGCTAATGCTCTGTT
1 TTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGTC
98599837 TTTAGCGGCATTTT
1 TTTAGCGGCATTTT
98599851 TGCTCAGTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 15 0.17
41 72 0.83
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (40 bp):
TTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGTC
Found at i:98599854 original size:23 final size:23
Alignment explanation
Indices: 98599828--98599875 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
98599818 GCGCCGCTAA
*
98599828 TGCTCTGTTTTTAGCGGCATTTT
1 TGCTCAGTTTTTAGCGGCATTTT
*
98599851 TGCTCAGTTTTTAGCGGCGTTTT
1 TGCTCAGTTTTTAGCGGCATTTT
98599874 TG
1 TG
98599876 TTAAAACACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.08, C:0.17, G:0.25, T:0.50
Consensus pattern (23 bp):
TGCTCAGTTTTTAGCGGCATTTT
Found at i:98601619 original size:46 final size:46
Alignment explanation
Indices: 98601504--98601746 Score: 140
Period size: 46 Copynumber: 5.2 Consensus size: 46
98601494 CCCAGGCACG
* * * *
98601504 GTCTTACACTGACTCAT-ATCTCAAGTC-AATGCTATGTCCCAGATAC-G
1 GTCTTACACTGACT-ATCATCTCGAGGCTGATGC-ATGTCCCA-A-ACAT
98601551 GTCTTACACTGACTATCATCTCGTA-GCTGATGCATGTCCCAAACAT
1 GTCTTACACTGACTATCATCTCG-AGGCTGATGCATGTCCCAAACAT
* * * *
98601597 GTCTTACACTGGCT-TACGTCTCGAGGCTGATGCATGTCCTAGACAT
1 GTCTTACACTGACTAT-CATCTCGAGGCTGATGCATGTCCCAAACAT
* * * * * * * *
98601643 GTCTTACACT-AGCTCTCGTTTCAATGCCGATGCCATGTCCTAGACAT
1 GTCTTACACTGA-CTATCATCTCGAGGCTGATG-CATGTCCCAAACAT
* * * * * * *
98601690 GGTCTTACGCTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACAT
1 -GTCTTACACTGACTATCAT-CTCGAGGCTGATGCATGTCCCAAACAT
98601737 GTCTTACACT
1 GTCTTACACT
98601747 AGCTCACAAA
Statistics
Matches: 162, Mismatches: 22, Indels: 25
0.78 0.11 0.12
Matches are distributed among these distances:
45 4 0.02
46 74 0.46
47 56 0.35
48 27 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
GTCTTACACTGACTATCATCTCGAGGCTGATGCATGTCCCAAACAT
Found at i:98601727 original size:47 final size:45
Alignment explanation
Indices: 98601579--98601751 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
98601569 TCTCGTAGCT
* * * * * * *
98601579 GATGCATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCGAGGCT
1 GATGCATGTCCTAGACATGTCTTACACTAGCTCT-CG-ATCAATGCC
*
98601625 GATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTTTCAATGCC
1 GATGCATGTCCTAGACATGTCTTACACTAGCTCTCG-ATCAATGCC
* *
98601671 GATGCCATGTCCTAGACATGGTCTTACGCTGGCTCTC-AT-AATGTGGCC
1 GATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCGATCAA--T-GCC
*
98601719 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCTAGACATGTCTTACACTAGCTC
98601752 ACAAACAAAT
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
45 2 0.02
46 55 0.51
47 29 0.27
48 22 0.20
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCTAGACATGTCTTACACTAGCTCTCGATCAATGCC
Found at i:98603322 original size:27 final size:26
Alignment explanation
Indices: 98603270--98603324 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
98603260 ACTTTGATTC
*
98603270 TTTAATTTTTGTTGTTCTTCCTTCTT
1 TTTAATTTTTGTTCTTCTTCCTTCTT
* *
98603296 TTTAATTTCTTTTTCTTCTTTCTTCTT
1 TTTAATTT-TTGTTCTTCTTCCTTCTT
98603323 TT
1 TT
98603325 ACAATTAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.07, C:0.16, G:0.04, T:0.73
Consensus pattern (26 bp):
TTTAATTTTTGTTCTTCTTCCTTCTT
Found at i:98604054 original size:63 final size:63
Alignment explanation
Indices: 98603955--98604109 Score: 222
Period size: 63 Copynumber: 2.5 Consensus size: 63
98603945 TCACACGAAC
* * * *
98603955 GTGTGCCTAGGTCGTGTAACTCACTGTTTGTAGTATAAAAAT-CACACGGCCAGGGGCAAAGGT
1 GTGTGCCCAGGCCGTGTAACTCACTGTTTGTAGTAT-AAAATCCACACGACCAGGGACAAAGGT
* **
98604018 GTGTGCCCAGGCCGTGTAACTCACTGTTTGTAGTATAAAATCCATACGACCAGGGACACGGGT
1 GTGTGCCCAGGCCGTGTAACTCACTGTTTGTAGTATAAAATCCACACGACCAGGGACAAAGGT
*
98604081 GTGTGCCCAGGCCATGTAACTCACTGTTT
1 GTGTGCCCAGGCCGTGTAACTCACTGTTT
98604110 ATGCTTAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
62 5 0.06
63 78 0.94
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (63 bp):
GTGTGCCCAGGCCGTGTAACTCACTGTTTGTAGTATAAAATCCACACGACCAGGGACAAAGGT
Found at i:98605830 original size:10 final size:10
Alignment explanation
Indices: 98605804--98605864 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
98605794 TGAAAATTTT
98605804 AATTTTTTA-
1 AATTTTTTAG
* *
98605813 TATATTTTAG
1 AATTTTTTAG
98605823 AATTTTTTTAG
1 AA-TTTTTTAG
98605834 AATTTTTTAG
1 AATTTTTTAG
*
98605844 AATTTTTATAT
1 AATTTTT-TAG
98605855 ATATTTTTTA
1 A-ATTTTTTA
98605865 AAAATATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
9 7 0.16
10 16 0.37
11 14 0.33
12 6 0.14
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (10 bp):
AATTTTTTAG
Found at i:98605831 original size:11 final size:11
Alignment explanation
Indices: 98605817--98605850 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
98605807 TTTTTATATA
98605817 TTTTAGAATTT
1 TTTTAGAATTT
98605828 TTTTAGAA-TT
1 TTTTAGAATTT
98605838 TTTTAGAATTT
1 TTTTAGAATTT
98605849 TT
1 TT
98605851 ATATATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (11 bp):
TTTTAGAATTT
Found at i:98605841 original size:21 final size:22
Alignment explanation
Indices: 98605812--98605864 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
98605802 TTAATTTTTT
* *
98605812 ATATATTTTAGAATTTTTTTAG
1 ATATTTTTTAGAATTTTTATAG
*
98605834 A-ATTTTTTAGAATTTTTATAT
1 ATATTTTTTAGAATTTTTATAG
98605855 ATATTTTTTA
1 ATATTTTTTA
98605865 AAAATATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (22 bp):
ATATTTTTTAGAATTTTTATAG
Found at i:98605905 original size:19 final size:19
Alignment explanation
Indices: 98605799--98605925 Score: 77
Period size: 19 Copynumber: 6.7 Consensus size: 19
98605789 AATTTTGAAA
*
98605799 ATTTT-AATTTTT-TATAT
1 ATTTTGAATTTTTATAAAT
*
98605816 ATTTTAGAATTTTTTTAGAAT
1 ATTTT-GAATTTTTATA-AAT
* *
98605837 TTTTTAGAATTTTTATATAT
1 ATTTT-GAATTTTTATAAAT
* ***
98605857 ATTTTTTAA-AAATAT-AA-
1 A-TTTTGAATTTTTATAAAT
98605874 ATTTTGAAATTTTTATAAAT
1 ATTTTG-AATTTTTATAAAT
*
98605894 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTATAAA-T
98605913 ATTTTGAATTTTT
1 ATTTTGAATTTTT
98605926 TTTATAATTT
Statistics
Matches: 84, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
16 4 0.05
17 8 0.10
18 12 0.14
19 23 0.27
20 16 0.19
21 21 0.25
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
ATTTTGAATTTTTATAAAT
Found at i:98615186 original size:40 final size:40
Alignment explanation
Indices: 98615129--98615330 Score: 192
Period size: 40 Copynumber: 5.0 Consensus size: 40
98615119 AATTATTGAA
* * *
98615129 TGTTTGTACATACGTGCCCCTTTTCATACTTCGGTACCCC
1 TGTTTGCACATACGTGCCCCTATTCGTACTTCGGTACCCC
* * ** *
98615169 TGTTTGGACATATGTGCCCCTATTCGTACTTCAATACACC
1 TGTTTGCACATACGTGCCCCTATTCGTACTTCGGTACCCC
*
98615209 TGTTTGCACATACGTGCTCCTACTT-GTACTTCGGTACCCC
1 TGTTTGCACATACGTGCCCCTA-TTCGTACTTCGGTACCCC
* * * * *
98615249 TATTTACACATACGTGCCCCTGCTT-GTACTTCGGCACCTC
1 TGTTTGCACATACGTGCCCCT-ATTCGTACTTCGGTACCCC
* * * * * *
98615289 TATTTACACATACGTGCCCCTGTTTGTACTTTGGTATCCC
1 TGTTTGCACATACGTGCCCCTATTCGTACTTCGGTACCCC
98615329 TG
1 TG
98615331 AAAGCATTTA
Statistics
Matches: 134, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.01
40 130 0.97
41 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.16, T:0.36
Consensus pattern (40 bp):
TGTTTGCACATACGTGCCCCTATTCGTACTTCGGTACCCC
Found at i:98615268 original size:20 final size:20
Alignment explanation
Indices: 98615245--98615309 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
98615235 TACTTCGGTA
98615245 CCCCTATTTACACATACGTG
1 CCCCTATTTACACATACGTG
** ** *
98615265 CCCCTGCTTGTAC-TTCG-G
1 CCCCTATTTACACATACGTG
98615283 CACCTCTATTTACACATACGTG
1 C-CC-CTATTTACACATACGTG
98615305 CCCCT
1 CCCCT
98615310 GTTTGTACTT
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
18 2 0.06
19 5 0.16
20 17 0.55
21 5 0.16
22 2 0.06
ACGTcount: A:0.18, C:0.38, G:0.12, T:0.31
Consensus pattern (20 bp):
CCCCTATTTACACATACGTG
Found at i:98624382 original size:26 final size:26
Alignment explanation
Indices: 98624353--98624402 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
98624343 TCCAACATGC
*
98624353 ATTTAGGTCAATTTA-GTCCTAGGGAT
1 ATTTAGGT-AATTTATCTCCTAGGGAT
*
98624379 ATTTCGGTAATTTATCTCCTAGGG
1 ATTTAGGTAATTTATCTCCTAGGG
98624403 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGAT
Found at i:98624551 original size:31 final size:31
Alignment explanation
Indices: 98624513--98624573 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
98624503 TTATCGAGGG
98624513 TTCTTACCGAATTGGGCGCGTTGGCCCTTTT
1 TTCTTACCGAATTGGGCGCGTTGGCCCTTTT
98624544 TTCTTACCGAATTGGGCGCGTTGGCCCTTT
1 TTCTTACCGAATTGGGCGCGTTGGCCCTTT
98624574 ATTCCAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.10, C:0.26, G:0.26, T:0.38
Consensus pattern (31 bp):
TTCTTACCGAATTGGGCGCGTTGGCCCTTTT
Found at i:98625723 original size:24 final size:24
Alignment explanation
Indices: 98625691--98625788 Score: 153
Period size: 24 Copynumber: 4.0 Consensus size: 24
98625681 AACTCCTGCT
98625691 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTT-ATCAGCTCCTAAATCTTCTC
* *
98625716 CTTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
98625740 CCTTATCAGCTCCTAAAT-TCTCTC
1 CCTTATCAGCTCCTAAATCT-TCTC
98625764 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
98625788 C
1 C
98625789 GACAGCCTTT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
24 63 0.94
25 4 0.06
ACGTcount: A:0.20, C:0.38, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTC
Found at i:98628993 original size:96 final size:96
Alignment explanation
Indices: 98628870--98629045 Score: 293
Period size: 96 Copynumber: 1.8 Consensus size: 96
98628860 CAAATAAAGT
*
98628870 ACCAATGCCATGTCCCCGACATGGTCTTACA-T-GAATTCACATATCATCACCGATGCCATGTCC
1 ACCAATGCCATGTCCCAGACATGGTCTTACACTGGAA--CACATATCATCACCGATGCCATGTCC
98628933 CAGACATGGTCTTACACTGACACGCATATCATC
64 CAGACATGGTCTTACACTGACACGCATATCATC
* *
98628966 ACCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCCTA
1 ACCAATGCCATGTCCCAGACATGGTCTTACACTGGAACACATATCATCACCGATGCCATGTCCCA
98629031 GACATGGTCTTACAC
66 GACATGGTCTTACAC
98629046 AGGCACATTT
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
96 72 0.96
97 1 0.01
98 2 0.03
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (96 bp):
ACCAATGCCATGTCCCAGACATGGTCTTACACTGGAACACATATCATCACCGATGCCATGTCCCA
GACATGGTCTTACACTGACACGCATATCATC
Found at i:98629051 original size:48 final size:48
Alignment explanation
Indices: 98628874--98629052 Score: 263
Period size: 48 Copynumber: 3.7 Consensus size: 48
98628864 TAAAGTACCA
* *
98628874 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATTCACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCACCG
* * *
98628922 ATGCCATGTCCCAGACATGGTCTTACACTGACACGCATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
98628970 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
98629018 ATGCCATGTCCTAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
98629053 TTTACCACGG
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
48 117 0.98
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
Found at i:98631079 original size:21 final size:22
Alignment explanation
Indices: 98631055--98631103 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
98631045 ATATTTATTT
*
98631055 TATATTATTATA-AATTATA-AA
1 TATATTATTAAATAATTA-AGAA
98631076 TATATT-TTAAATAATTAAGAA
1 TATATTATTAAATAATTAAGAA
98631097 TATATTA
1 TATATTA
98631104 AATTAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TATATTATTAAATAATTAAGAA
Found at i:98633039 original size:45 final size:45
Alignment explanation
Indices: 98632975--98633068 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
98632965 TATCATAAAC
*
98632975 ATGATTAAAACAAGTAAGACCATAGATGAAAGATGCTATGGCAAT
1 ATGATTAAAACAAGTAAGACCATAGATGAAAGAAGCTATGGCAAT
* * *
98633020 ATGATTAAAACGAGTAAGACCATAGCTGAAAGAAGCTATGGCATT
1 ATGATTAAAACAAGTAAGACCATAGATGAAAGAAGCTATGGCAAT
98633065 ATGA
1 ATGA
98633069 CGGAAGTGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.22
Consensus pattern (45 bp):
ATGATTAAAACAAGTAAGACCATAGATGAAAGAAGCTATGGCAAT
Found at i:98633080 original size:45 final size:45
Alignment explanation
Indices: 98632981--98633097 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
98632971 AAACATGATT
* * * **
98632981 AAAACAAGTAAGACCATAGATGAAAGATGCTATGGCAATATGATT
1 AAAACGAGTAAGACCATAGCTGAAAGAAGCTATGGCAATATGACG
*
98633026 AAAACGAGTAAGACCATAGCTGAAAGAAGCTATGGCATTATGACG
1 AAAACGAGTAAGACCATAGCTGAAAGAAGCTATGGCAATATGACG
* ** *
98633071 GAAGTGAGTAAGACCATAACTGAAAGA
1 AAAACGAGTAAGACCATAGCTGAAAGA
98633098 CACAATGGCA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19
Consensus pattern (45 bp):
AAAACGAGTAAGACCATAGCTGAAAGAAGCTATGGCAATATGACG
Found at i:98638910 original size:29 final size:29
Alignment explanation
Indices: 98638861--98638949 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
98638851 ACTAAGTATT
98638861 GTTCTGGAAAAAATAATTTTGACAAGATGG
1 GTTCT-GAAAAAATAATTTTGACAAGATGG
* * *
98638891 GTTCTGAAAAAATAAATTTGACGTA-ATGT
1 GTTCTGAAAAAATAATTTTGAC-AAGATGG
* *
98638920 GTTCTGAAAAATATTATTTTGACGAGATGG
1 GTTCTGAAAAA-ATAATTTTGACAAGATGG
98638950 ATTTTTTTTG
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
29 31 0.63
30 18 0.37
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (29 bp):
GTTCTGAAAAAATAATTTTGACAAGATGG
Found at i:98652314 original size:13 final size:13
Alignment explanation
Indices: 98652298--98652330 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98652288 TTTAATTAAA
*
98652298 TTAGTTAATTAGT
1 TTAGATAATTAGT
98652311 TTAGATAATTAGT
1 TTAGATAATTAGT
98652324 TTA-ATAA
1 TTAGATAA
98652331 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:98653770 original size:59 final size:59
Alignment explanation
Indices: 98653636--98653814 Score: 216
Period size: 59 Copynumber: 3.1 Consensus size: 59
98653626 GTCCACATTG
* ** *
98653636 AAAGAACTTCTAATTTATTAAATGAAACAATAT-TATTTGATTTGTACAAAAATATTCA
1 AAAGAACTTCTAATTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCA
** * * * *
98653694 AAAGAACAGCTATTTTATTAAATGAAATAATATAAAAATAATTTTTACAAAAATTTTCA
1 AAAGAACTTCTAATTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCA
* * * * *
98653753 AAATAACTTATACTTTATTAAATGAAACAATATACAAATAATTTGAACAAAAATATTCA
1 AAAGAACTTCTAATTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCA
98653812 AAA
1 AAA
98653815 ATAAATCAAT
Statistics
Matches: 100, Mismatches: 20, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
58 29 0.29
59 71 0.71
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.35
Consensus pattern (59 bp):
AAAGAACTTCTAATTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCA
Found at i:98658337 original size:28 final size:27
Alignment explanation
Indices: 98658292--98658356 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 27
98658282 CATTGTAGAA
* *
98658292 ACAGTATCAGGTGGGCCTTAGCCCAAT
1 ACAGAATCAGGTGGGCCTAAGCCCAAT
*
98658319 AATAGAATCAGGTGGGCCTAAGCCCAAT
1 -ACAGAATCAGGTGGGCCTAAGCCCAAT
98658347 ACAGAATCAG
1 ACAGAATCAG
98658357 TATCAGATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 9 0.27
28 24 0.73
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
ACAGAATCAGGTGGGCCTAAGCCCAAT
Found at i:98660570 original size:18 final size:17
Alignment explanation
Indices: 98660529--98660577 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
98660519 GACTATTATA
*
98660529 AAAAATATTAATTAAATT
1 AAAAA-ATTAAATAAATT
98660547 ATAAAAATTAAATAATATT
1 A-AAAAATTAAATAA-ATT
*
98660566 AAAAAATAAAAT
1 AAAAAATTAAAT
98660578 TTACCCTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 19 0.70
19 8 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAAAATTAAATAAATT
Found at i:98663058 original size:8 final size:8
Alignment explanation
Indices: 98663045--98663069 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
98663035 ATATTAATTT
98663045 TAATTTAA
1 TAATTTAA
98663053 TAATTTAA
1 TAATTTAA
98663061 TAATTTAA
1 TAATTTAA
98663069 T
1 T
98663070 TTTTTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TAATTTAA
Found at i:98664298 original size:39 final size:39
Alignment explanation
Indices: 98664242--98664320 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
98664232 TATCCATCTA
* *
98664242 TTTTCTTACTATTAGTTGGAGCCCATAACTAGTTATTCT
1 TTTTCTTACCATAAGTTGGAGCCCATAACTAGTTATTCT
98664281 TTTTCTTACCATAAGTTGGAGCCCATAACTAGTTATTCT
1 TTTTCTTACCATAAGTTGGAGCCCATAACTAGTTATTCT
98664320 T
1 T
98664321 ACTTTCTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (39 bp):
TTTTCTTACCATAAGTTGGAGCCCATAACTAGTTATTCT
Found at i:98668669 original size:22 final size:22
Alignment explanation
Indices: 98668645--98668685 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
98668635 TGGGAGACAA
98668645 AAAAACTT-AAATTTTTTTTCT
1 AAAAACTTCAAATTTTTTTTCT
*
98668666 AAAAACTTCATATTTTTTTT
1 AAAAACTTCAAATTTTTTTT
98668686 GTTTTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (22 bp):
AAAAACTTCAAATTTTTTTTCT
Found at i:98669277 original size:16 final size:15
Alignment explanation
Indices: 98669248--98669294 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
98669238 GGAAGAATAC
*
98669248 AAAAAAAGAATGAAA
1 AAAAAAAAAATGAAA
*
98669263 AAATGAAAAAATGAAA
1 AAA-AAAAAAATGAAA
*
98669279 AAAAAAAAAAAGAAA
1 AAAAAAAAAATGAAA
98669294 A
1 A
98669295 TGTGAGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (15 bp):
AAAAAAAAAATGAAA
Found at i:98669279 original size:7 final size:8
Alignment explanation
Indices: 98669251--98669294 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
98669241 AGAATACAAA
98669251 AAAAGAATG
1 AAAA-AATG
98669260 AAAAAATG
1 AAAAAATG
98669268 AAAAAATG
1 AAAAAATG
*
98669276 AAAAAA-A
1 AAAAAATG
*
98669283 AAAAAAAG
1 AAAAAATG
98669291 AAAA
1 AAAA
98669295 TGTGAGAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
7 6 0.19
8 22 0.69
9 4 0.12
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (8 bp):
AAAAAATG
Found at i:98673290 original size:21 final size:21
Alignment explanation
Indices: 98673266--98673309 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
98673256 TTAATTACAA
**
98673266 CCAATCTCCGAAACTCAACAC
1 CCAATCTCAAAAACTCAACAC
98673287 CCAATCTCAAAAACTCAACAC
1 CCAATCTCAAAAACTCAACAC
98673308 CC
1 CC
98673310 GCTGTGTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.43, G:0.02, T:0.14
Consensus pattern (21 bp):
CCAATCTCAAAAACTCAACAC
Found at i:98677906 original size:79 final size:81
Alignment explanation
Indices: 98677770--98677954 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
98677760 TTGAATGATG
*
98677770 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
98677834 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
98677849 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
98677911 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
98677929 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
98677955 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:98677968 original size:40 final size:40
Alignment explanation
Indices: 98677771--98677954 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
98677761 TGAATGATGT
* * * *
98677771 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
98677811 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
98677851 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
98677889 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
98677930 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
98677955 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:98677976 original size:79 final size:79
Alignment explanation
Indices: 98677823--98677987 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
98677813 GGACTAAGAT
* **
98677823 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
98677888 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
98677902 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
98677965 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
98677981 CCGAAGG
1 CCGAAGG
98677988 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:98680018 original size:46 final size:46
Alignment explanation
Indices: 98679872--98680088 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 46
98679862 TTTGTGTGCT
* *
98679872 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * *
98679918 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
98679966 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * * *
98680012 AGTGTAAGACATGTCTGGGACATGTATCAG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* *
98680056 AGTGTAAGACCTTGTCTGAGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
98680089 GCCTGCACCT
Statistics
Matches: 138, Mismatches: 24, Indels: 17
0.77 0.13 0.09
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 62 0.45
47 28 0.20
48 22 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:98697832 original size:26 final size:25
Alignment explanation
Indices: 98697756--98697843 Score: 74
Period size: 26 Copynumber: 3.6 Consensus size: 25
98697746 CCGAGATATA
*
98697756 TAAT-AGGAAGCTCATAAGAGCC-A
1 TAATCAGGAAGCTCATAAGAGCCTT
* * * * *
98697779 TAATCAGGAAGTTCACAAATAACTTT
1 TAATCAGGAAGCTCA-TAAGAGCCTT
*
98697805 TAACCAGGAAGCTCATGAAGAGCCTT
1 TAATCAGGAAGCTCAT-AAGAGCCTT
98697831 TAATCA-GAAGCTC
1 TAATCAGGAAGCTC
98697844 TAGATAGCCA
Statistics
Matches: 48, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
23 4 0.08
24 9 0.19
25 11 0.23
26 24 0.50
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (25 bp):
TAATCAGGAAGCTCATAAGAGCCTT
Found at i:98702788 original size:20 final size:21
Alignment explanation
Indices: 98702763--98702802 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98702753 CACTTGAATC
*
98702763 AGGGC-ACACGCCGGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
98702783 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
98702803 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.42, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:98704246 original size:91 final size:92
Alignment explanation
Indices: 98704141--98704308 Score: 232
Period size: 91 Copynumber: 1.8 Consensus size: 92
98704131 TTATACGAGC
**
98704141 CGATGCCATGTCCTAGGCATGGTCCTACACTGACACATC-T-CGTAGCTGATGCATGTCCCAGAC
1 CGATGCCATGTCCTAGAAATGGTCCTACACTGACAC-TCATACGTAGCTGATGCATGTCCCAGAC
98704204 ATGTCTTACACTAGCTCTTGTCTCAATG
65 ATGTCTTACACTAGCTCTTGTCTCAATG
* * * * * *
98704232 CGATGCCATGTCCTAGAAATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCTAGAC
1 CGATGCCATGTCCTAGAAATGGTCCTACACTGACACTCAT-ACGTAGCTGATGCATGTCCCAGAC
98704297 ATGTCTTACACT
65 ATGTCTTACACT
98704309 GGCACACAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
90 2 0.03
91 32 0.48
93 32 0.48
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
CGATGCCATGTCCTAGAAATGGTCCTACACTGACACTCATACGTAGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCTCTTGTCTCAATG
Found at i:98719992 original size:5 final size:6
Alignment explanation
Indices: 98719977--98720001 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
98719967 CTTGTTCTTA
98719977 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
98720002 TACATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:98729357 original size:49 final size:49
Alignment explanation
Indices: 98729218--98729636 Score: 669
Period size: 49 Copynumber: 8.8 Consensus size: 49
98729208 TTAGGATTCT
98729218 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
98729265 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
98729312 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
98729361 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
98729410 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
98729459 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
98729508 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
98729555 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
98729602 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
98729637 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 161 0.45
48 1 0.00
49 195 0.55
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:98729811 original size:37 final size:37
Alignment explanation
Indices: 98729755--98729833 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
98729745 CCGAGCTCTA
* * *
98729755 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
98729792 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
98729829 AAGAC
1 AAGAC
98729834 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:98747149 original size:26 final size:26
Alignment explanation
Indices: 98747120--98747170 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
98747110 TAGGACAATA
98747120 CGTCGTCCGCAGCTGCTCAATCATAG
1 CGTCGTCCGCAGCTGCTCAATCATAG
** *
98747146 CGTCGTTTGCAGCTGCTCGATCATA
1 CGTCGTCCGCAGCTGCTCAATCATA
98747171 CAACCCTGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.31, G:0.24, T:0.27
Consensus pattern (26 bp):
CGTCGTCCGCAGCTGCTCAATCATAG
Found at i:98760756 original size:26 final size:26
Alignment explanation
Indices: 98760727--98760886 Score: 68
Period size: 26 Copynumber: 6.4 Consensus size: 26
98760717 CTCTCTCAAT
*
98760727 CCATATAA-CAGGAAGCTTACAAAGAG
1 CCAT-TAATCAGGAAGCTCACAAAGAG
* *
98760753 CCATTAATCGGGAATCTCACAAAGAG
1 CCATTAATCAGGAAGCTCACAAAGAG
* * *
98760779 CC--T-ATCATGAAGCTTATC-CAG-G
1 CCATTAATCAGGAAGCTCA-CAAAGAG
* * *
98760801 CTATATAA-CAGAAAGCTCA-TAAGAG
1 CCAT-TAATCAGGAAGCTCACAAAGAG
* * *
98760826 CCA-CAATCAGGAAGTTCACAAAGAA
1 CCATTAATCAGGAAGCTCACAAAGAG
** * **
98760851 CTTTTAATCAGGAAGCTTAGGAAGAG
1 CCATTAATCAGGAAGCTCACAAAGAG
*
98760877 CCTTTAATCA
1 CCATTAATCA
98760887 TGAGCTCTGG
Statistics
Matches: 95, Mismatches: 28, Indels: 22
0.66 0.19 0.15
Matches are distributed among these distances:
22 2 0.02
23 13 0.14
24 13 0.14
25 20 0.21
26 47 0.49
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (26 bp):
CCATTAATCAGGAAGCTCACAAAGAG
Found at i:98771302 original size:40 final size:39
Alignment explanation
Indices: 98771204--98771466 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
98771194 TCCTCGTTCA
* * * *
98771204 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
98771243 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
98771282 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
98771322 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
98771362 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
98771402 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
98771443 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
98771467 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:98771426 original size:120 final size:119
Alignment explanation
Indices: 98771204--98771466 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
98771194 TCCTCGTTCA
* * *
98771204 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
98771269 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
98771322 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
98771387 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
98771443 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
98771467 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:98771475 original size:41 final size:41
Alignment explanation
Indices: 98771398--98771475 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
98771388 TTTGTATCTC
* * *
98771398 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
98771439 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
98771476 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:98779248 original size:40 final size:40
Alignment explanation
Indices: 98779150--98779452 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 40
98779140 TCCTCGTTCA
* * * * *
98779150 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
98779189 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
98779229 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
98779269 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
98779309 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
98779349 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
98779389 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
98779429 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
98779453 CAGCATTCAA
Statistics
Matches: 235, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
39 39 0.17
40 184 0.78
41 12 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:98779461 original size:41 final size:41
Alignment explanation
Indices: 98779384--98779461 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
98779374 TTTGTATCTC
* * *
98779384 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
98779425 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
98779462 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:98782502 original size:27 final size:27
Alignment explanation
Indices: 98782472--98782524 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
98782462 CTCATAGGGG
* *
98782472 CATAACAGTCATTTTATCTACTACGGA
1 CATAACAGTAATTTTATCAACTACGGA
**
98782499 CATAGTAGTAATTTTATCAACTACGG
1 CATAACAGTAATTTTATCAACTACGG
98782525 GGTCTAAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (27 bp):
CATAACAGTAATTTTATCAACTACGGA
Found at i:98790423 original size:18 final size:17
Alignment explanation
Indices: 98790397--98790430 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
98790387 TGTATTGTGG
98790397 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
98790415 GCCCTTGTGGCCCACA
1 GCCCATGTGGCCCACA
98790431 TAGCCTAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.26, T:0.15
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:98799191 original size:45 final size:45
Alignment explanation
Indices: 98799140--98799228 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
98799130 GACTTATGTA
* *
98799140 ATCTGAACTCATTGAGTTGTGGTTTGAGCTCATGATATATGTGAT
1 ATCTGAACTCATTGAGTTATGGTCTGAGCTCATGATATATGTGAT
* *
98799185 ATCTGAACTCATTGAGTTATGGTCTGAGTTCGTGATATATGTGA
1 ATCTGAACTCATTGAGTTATGGTCTGAGCTCATGATATATGTGA
98799229 CACATGTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTATGGTCTGAGCTCATGATATATGTGAT
Found at i:98799211 original size:21 final size:21
Alignment explanation
Indices: 98799141--98799211 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
98799131 ACTTATGTAA
*
98799141 TCTGAACTCATTGAGTTGTGG
1 TCTGAACTCATTGAGTTATGG
* *
98799162 TTTGAGCTCA-TGA-TATATGTG
1 TCTGAACTCATTGAGT-TATG-G
98799183 ATATCTGAACTCATTGAGTTATGG
1 ---TCTGAACTCATTGAGTTATGG
98799207 TCTGA
1 TCTGA
98799212 GTTCGTGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
19 1 0.03
20 6 0.16
21 14 0.37
24 9 0.24
25 7 0.18
26 1 0.03
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (21 bp):
TCTGAACTCATTGAGTTATGG
Found at i:98801552 original size:47 final size:45
Alignment explanation
Indices: 98801472--98801598 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 45
98801462 ATATAGCTGG
* * *
98801472 AGCTATCTCAATCACGCACA-TTAAGTGCCAATATATGTATATAACTAA
1 AGCTATCTCAGTCTCGCACACTT-AGTGCCAATATAT-T-T-TAACCAA
* * *
98801520 AGTTATCT-GGTCTCGCACACTTAGTGCCAATATA-TTTAGCCAA
1 AGCTATCTCAGTCTCGCACACTTAGTGCCAATATATTTTAACCAA
*
98801563 AGCTATCTCAGTCTTGCACACTTAGTGCCAATATAT
1 AGCTATCTCAGTCTCGCACACTTAGTGCCAATATAT
98801599 AACCGAATCA
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
43 12 0.18
44 25 0.37
45 1 0.01
47 20 0.30
48 9 0.13
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.31
Consensus pattern (45 bp):
AGCTATCTCAGTCTCGCACACTTAGTGCCAATATATTTTAACCAA
Found at i:98805395 original size:20 final size:20
Alignment explanation
Indices: 98805370--98805415 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
98805360 ACCCGCACGG
98805370 GCGTGTCCCAAGCCACACAA
1 GCGTGTCCCAAGCCACACAA
*
98805390 GCGTGTCCCAAGCCACACAG
1 GCGTGTCCCAAGCCACACAA
98805410 GCGTGT
1 GCGTGT
98805416 GACCCCTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.37, G:0.26, T:0.13
Consensus pattern (20 bp):
GCGTGTCCCAAGCCACACAA
Found at i:98812341 original size:39 final size:39
Alignment explanation
Indices: 98812287--98812377 Score: 182
Period size: 39 Copynumber: 2.3 Consensus size: 39
98812277 TAATGGAGAA
98812287 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
98812326 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
98812365 TTATATCCGGGCT
1 TTATATCCGGGCT
98812378 CAGTGTAACA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:98817124 original size:39 final size:39
Alignment explanation
Indices: 98817070--98817193 Score: 185
Period size: 39 Copynumber: 3.2 Consensus size: 39
98817060 GCATGATATT
* *
98817070 TAGAAACATATCCGGACTTGAGGTTCGCAGGCTACGTGC
1 TAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
98817109 TAGAAATATATCCGGACTTGAGGTCCACAAGCTACGTGC
1 TAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
98817148 TGGAAATATATCTGGACTTGAGGTCCGCAGGCTACGTGC
1 TAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
98817187 TGGAAAT
1 TAGAAAT
98817194 GTATTCGGGC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
TAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:98840653 original size:39 final size:39
Alignment explanation
Indices: 98840426--98840641 Score: 299
Period size: 39 Copynumber: 5.5 Consensus size: 39
98840416 ATGAAGCATG
* * *
98840426 CGGGACTTTAAGCCCAGATATAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
98840466 CGGGACTTAGACCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
98840505 CGGGACTTAGCCTGGGTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
98840544 CGAGACTTAGCTCGGATATAACACAAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
98840583 CGGGACTTAGCTCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
98840622 CGGGATTTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
98840642 TATCTCACAC
Statistics
Matches: 158, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
38 19 0.12
39 133 0.84
40 6 0.04
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:98847011 original size:39 final size:39
Alignment explanation
Indices: 98846833--98846999 Score: 246
Period size: 39 Copynumber: 4.3 Consensus size: 39
98846823 CAGGACTTTA
* * *
98846833 AGCCCGAATATAATACCAGCACAAA-GCCGTCGGGACTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
* *
98846871 AGCCTGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
* * *
98846910 AGCTCAGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
*
98846949 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGAATT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
98846988 AGCCCGGATATA
1 AGCCCGGATATA
98847000 TATCTCACAC
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 21 0.18
39 95 0.82
ACGTcount: A:0.32, C:0.28, G:0.22, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
Found at i:98847831 original size:150 final size:150
Alignment explanation
Indices: 98847560--98847853 Score: 579
Period size: 150 Copynumber: 2.0 Consensus size: 150
98847550 GCCACTAGTC
*
98847560 GGTAAGGGGCATTACCGGACTTGTAACTCATGTCAGAATAGTAAAATTTTGAACTTTTTCTTGAA
1 GGTAAGGGGCATTACCGGACTTGTAACTCATGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAA
98847625 ATAAAGATCATTCATTTAAATAAGTACTAAGCACAGCCAGGGATAAAATTTAAACTTCTCTAAGT
66 ATAAAGATCATTCATTTAAATAAGTACTAAGCACAGCCAGGGATAAAATTTAAACTTCTCTAAGT
98847690 AAACATTCAAAAGAGGAATA
131 AAACATTCAAAAGAGGAATA
98847710 GGTAAGGGGCATTACCGGACTTGTAACTCATGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAA
1 GGTAAGGGGCATTACCGGACTTGTAACTCATGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAA
98847775 ATAAAGATCATTCATTTAAATAAGTACTAAGCACAGCCAGGGATAAAATTTAAACTTCTCTAAGT
66 ATAAAGATCATTCATTTAAATAAGTACTAAGCACAGCCAGGGATAAAATTTAAACTTCTCTAAGT
98847840 AAACATTCAAAAGA
131 AAACATTCAAAAGA
98847854 TGCCATTTTC
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 143 1.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (150 bp):
GGTAAGGGGCATTACCGGACTTGTAACTCATGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAA
ATAAAGATCATTCATTTAAATAAGTACTAAGCACAGCCAGGGATAAAATTTAAACTTCTCTAAGT
AAACATTCAAAAGAGGAATA
Found at i:98848553 original size:37 final size:37
Alignment explanation
Indices: 98848489--98848593 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
98848479 AGCTCAGACG
* *
98848489 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98848526 AAATCTCCACACGTAGTCATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98848563 TAATCTCCACACGTAGTCATCGGGTCTTACC
1 AAATCTCCACACGTAGTCATCGGGTCTTACC
98848594 AGGAATATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:98848856 original size:47 final size:47
Alignment explanation
Indices: 98848804--98848996 Score: 287
Period size: 47 Copynumber: 4.1 Consensus size: 47
98848794 CATACATATT
* * * *
98848804 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
98848851 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
98848898 TCACATGGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
98848945 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98848992 TCACA
1 TCACA
98848997 GAAAATCCTA
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:98850225 original size:51 final size:51
Alignment explanation
Indices: 98850165--98850261 Score: 194
Period size: 51 Copynumber: 1.9 Consensus size: 51
98850155 CTTAAGTACT
98850165 TAACTAATATTATTCACTTAACAATCACATTTGGCAATCACATATCGTTTA
1 TAACTAATATTATTCACTTAACAATCACATTTGGCAATCACATATCGTTTA
98850216 TAACTAATATTATTCACTTAACAATCACATTTGGCAATCACATATC
1 TAACTAATATTATTCACTTAACAATCACATTTGGCAATCACATATC
98850262 ATTTGATCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (51 bp):
TAACTAATATTATTCACTTAACAATCACATTTGGCAATCACATATCGTTTA
Found at i:98853116 original size:40 final size:40
Alignment explanation
Indices: 98853083--98853594 Score: 835
Period size: 40 Copynumber: 12.8 Consensus size: 40
98853073 CCAGCATGAT
* * *
98853083 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
98853123 TGCTCTTCGGGGTTTAGCACGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
98853163 TGCTCTTCGGAACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
98853203 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
98853243 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
98853283 TGCTCTTCGGGACTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
98853323 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
98853363 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
98853403 TGCTCTTCGGGACTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
98853443 TGCTCTTCGGGACTTAGCCCGGATATATCACTAACACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
98853483 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
98853523 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
98853563 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
98853595 CTCAATTCTC
Statistics
Matches: 437, Mismatches: 35, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 437 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:98853340 original size:23 final size:23
Alignment explanation
Indices: 98853234--98853340 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 23
98853224 GATACATCAC
98853234 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * *
98853257 TAGCCCGAAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
98853274 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
98853297 TAGCTCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
98853314 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
98853337 TAGC
1 TAGC
98853341 CCGGATATAT
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
17 17 0.29
18 5 0.09
19 5 0.09
21 5 0.09
22 5 0.09
23 21 0.36
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:98853460 original size:23 final size:23
Alignment explanation
Indices: 98853394--98853460 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
98853384 GATACATCAC
98853394 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
98853417 TAGCTCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
98853434 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
98853457 TAGC
1 TAGC
98853461 CCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 2 0.07
19 3 0.10
21 3 0.10
22 2 0.07
23 12 0.40
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:98854924 original size:37 final size:37
Alignment explanation
Indices: 98854865--98854973 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
98854855 AGCTCAGACG
* *
98854865 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
98854902 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98854939 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
98854974 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:98855232 original size:47 final size:47
Alignment explanation
Indices: 98855180--98855373 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
98855170 CATACATATT
* * * * *
98855180 TCACATTAGCCATTTGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
98855227 TCACATTGGCCATTCGGCCTTATCACACATCTGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98855274 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
98855321 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98855368 TCACAT
1 TCACAT
98855374 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:98855252 original size:22 final size:22
Alignment explanation
Indices: 98855226--98855344 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
98855216 GTTCATATTC
98855226 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
98855248 ATCACACATCT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
98855272 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
98855295 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
98855319 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
98855342 ATC
1 ATC
98855345 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:98861898 original size:53 final size:53
Alignment explanation
Indices: 98861818--98861922 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
98861808 CACAACGCCA
*
98861818 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAACCGTTTGGTTATGACG
1 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAACCATTTGGTTATGACG
98861871 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAACCATTTGGTTATGAC
1 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAACCATTTGGTTATGAC
98861923 CATCTTAAGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (53 bp):
TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAACCATTTGGTTATGACG
Found at i:98865550 original size:17 final size:17
Alignment explanation
Indices: 98865528--98865561 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
98865518 ACACCAAATC
98865528 TTTCTTGGTGGGTGTCA
1 TTTCTTGGTGGGTGTCA
98865545 TTTCTTGGTGGGTGTCA
1 TTTCTTGGTGGGTGTCA
98865562 AAGGTAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.35, T:0.47
Consensus pattern (17 bp):
TTTCTTGGTGGGTGTCA
Found at i:98875442 original size:43 final size:42
Alignment explanation
Indices: 98875394--98875490 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
98875384 TCCTAAACGT
* * * *
98875394 GGTCTTACATGTAATCAAATATCGATG-TCACTGTCCCAGAAAG
1 GGTCTTACACGAAATCAAATA-CAATGCTAAC-GTCCCAGAAAG
* *
98875437 GGTCTTACACGAAATCAAATACAATGCTAACGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACAATGCTAACGTCCCAGAAAG
98875479 GGTCTTACACGA
1 GGTCTTACACGA
98875491 TAACACATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 25 0.53
43 22 0.47
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACAATGCTAACGTCCCAGAAAG
Found at i:98875485 original size:42 final size:43
Alignment explanation
Indices: 98875375--98875490 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
98875365 AGCTCGTACG
* * * * * * *
98875375 ATGCCAACGTCCTAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCTAACGTCCCAGACATGGTCTTACACGAAATCAAATATCA
* * *
98875418 ATG-TCACTGTCCCAGAAAGGGTCTTACACGAAATCAAATA-CA
1 ATGCTAAC-GTCCCAGACATGGTCTTACACGAAATCAAATATCA
98875460 ATGCTAACGTCCCAGACATGGTCTTACACGA
1 ATGCTAACGTCCCAGACATGGTCTTACACGA
98875491 TAACACATAT
Statistics
Matches: 58, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
42 27 0.47
43 31 0.53
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCTAACGTCCCAGACATGGTCTTACACGAAATCAAATATCA
Found at i:98877261 original size:26 final size:26
Alignment explanation
Indices: 98877225--98877294 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
98877215 CACCAGTATT
* *
98877225 GCAGCATAGCT-CCTAGTAATAATATC
1 GCAGCAAAGCTGCC-AGTAATAATAAC
*
98877251 GCAGCAAAGCTGCCAGTAATAGTAAC
1 GCAGCAAAGCTGCCAGTAATAATAAC
*
98877277 ACAGCAAAGCTGCCAGTA
1 GCAGCAAAGCTGCCAGTA
98877295 TCAGTATATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAATAATAAC
Found at i:98877341 original size:20 final size:20
Alignment explanation
Indices: 98877304--98877462 Score: 120
Period size: 20 Copynumber: 8.0 Consensus size: 20
98877294 ATCAGTATAT
* *
98877304 GGCACAAAGCTATGGGTAGC
1 GGCACAAAGCCATCGGTAGC
* * *
98877324 GGCTCGAAGCCATCGGTAGG
1 GGCACAAAGCCATCGGTAGC
** *
98877344 GGCACAAAGCCATCAATAGT
1 GGCACAAAGCCATCGGTAGC
* ** *
98877364 GTCACAAAGCCATCACTAGT
1 GGCACAAAGCCATCGGTAGC
** *
98877384 GGCACAAAGCCATCACTAGT
1 GGCACAAAGCCATCGGTAGC
* **
98877404 GGCACAAAGACATCAATAGC
1 GGCACAAAGCCATCGGTAGC
** *
98877424 GGCACAAAGCCATCAATAGT
1 GGCACAAAGCCATCGGTAGC
*
98877444 GGCACAAAGCCATCAGTAG
1 GGCACAAAGCCATCGGTAG
98877463 GTCCACAGTC
Statistics
Matches: 120, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 120 1.00
ACGTcount: A:0.35, C:0.26, G:0.25, T:0.14
Consensus pattern (20 bp):
GGCACAAAGCCATCGGTAGC
Found at i:98877374 original size:40 final size:40
Alignment explanation
Indices: 98877330--98877463 Score: 196
Period size: 40 Copynumber: 3.4 Consensus size: 40
98877320 TAGCGGCTCG
* *
98877330 AAGCCATCGGTAGGGGCACAAAGCCATCAATAGTGTCACA
1 AAGCCATCAGTAGGGGCACAAAGCCATCAATAGTGGCACA
* * *
98877370 AAGCCATCACTAGTGGCACAAAGCCATCACTAGTGGCACA
1 AAGCCATCAGTAGGGGCACAAAGCCATCAATAGTGGCACA
* * *
98877410 AAGACATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
1 AAGCCATCAGTAGGGGCACAAAGCCATCAATAGTGGCACA
98877450 AAGCCATCAGTAGG
1 AAGCCATCAGTAGG
98877464 TCCACAGTCA
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.14
Consensus pattern (40 bp):
AAGCCATCAGTAGGGGCACAAAGCCATCAATAGTGGCACA
Found at i:98877408 original size:60 final size:60
Alignment explanation
Indices: 98877330--98877463 Score: 196
Period size: 60 Copynumber: 2.2 Consensus size: 60
98877320 TAGCGGCTCG
** * * * *
98877330 AAGCCATCGGTAGGGGCACAAAGCCATCAATAGTGTCACAAAGCCATCACTAGTGGCACA
1 AAGCCATCACTAGGGGCACAAAGACATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
*
98877390 AAGCCATCACTAGTGGCACAAAGACATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
1 AAGCCATCACTAGGGGCACAAAGACATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
*
98877450 AAGCCATCAGTAGG
1 AAGCCATCACTAGG
98877464 TCCACAGTCA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.14
Consensus pattern (60 bp):
AAGCCATCACTAGGGGCACAAAGACATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
Found at i:98877469 original size:20 final size:20
Alignment explanation
Indices: 98877330--98877469 Score: 128
Period size: 20 Copynumber: 7.0 Consensus size: 20
98877320 TAGCGGCTCG
** *
98877330 AAGCCATCGGTAGGGGCACA
1 AAGCCATCAATAGGTGCACA
98877350 AAGCCATCAATA-GTGTCACA
1 AAGCCATCAATAGGTG-CACA
*
98877370 AAGCCATCACTA-GTGGCACA
1 AAGCCATCAATAGGT-GCACA
*
98877390 AAGCCATCACTA-GTGGCACA
1 AAGCCATCAATAGGT-GCACA
*
98877410 AAGACATCAATAGCG-GCACA
1 AAGCCATCAATAG-GTGCACA
98877430 AAGCCATCAATA-GTGGCACA
1 AAGCCATCAATAGGT-GCACA
* *
98877450 AAGCCATCAGTAGGTCCACA
1 AAGCCATCAATAGGTGCACA
98877470 GTCATCTTGT
Statistics
Matches: 104, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.01
19 2 0.02
20 97 0.93
21 3 0.03
22 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.21, T:0.14
Consensus pattern (20 bp):
AAGCCATCAATAGGTGCACA
Found at i:98877666 original size:26 final size:28
Alignment explanation
Indices: 98877629--98877682 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
98877619 ATCATAGCAC
*
98877629 AAATCAGTCA-TTTACCCTCTAGGGGTA
1 AAATCAGTCATTTTACCCTATAGGGGTA
98877656 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTATAGGGGTA
98877683 TTTTGGTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTATAGGGGTA
Found at i:98880209 original size:46 final size:45
Alignment explanation
Indices: 98880153--98880328 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
98880143 TATTTGGGCA
98880153 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
98880199 TCGGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
98880246 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATTCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
98880292 -CCCAAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98880329 GTGGGTTACA
Statistics
Matches: 101, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
44 3 0.03
45 4 0.04
46 60 0.59
47 29 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:98880308 original size:93 final size:93
Alignment explanation
Indices: 98880149--98880320 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
98880139 AGGGTATTTG
* ** *
98880149 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCATTGAG
*
98880214 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
98880242 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATTCGAACG-CCCAAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCATTGA
98880306 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
98880321 ACTTATGGGT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:98883658 original size:26 final size:26
Alignment explanation
Indices: 98883620--98883673 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
98883610 TCGTACTAGA
*
98883620 ATAAAATGGGCTGATTTAGTTAATCT
1 ATAAAATGCGCTGATTTAGTTAATCT
98883646 ATAAAATGCGCTGATTTAGTTAATCT
1 ATAAAATGCGCTGATTTAGTTAATCT
98883672 AT
1 AT
98883674 CAACCACAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (26 bp):
ATAAAATGCGCTGATTTAGTTAATCT
Found at i:98885834 original size:21 final size:21
Alignment explanation
Indices: 98885808--98885849 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
98885798 TCATTTGGCG
98885808 CTAAGGTACAATTGCTAGGCA
1 CTAAGGTACAATTGCTAGGCA
*
98885829 CTAAGGTGCAATTGCTAGGCA
1 CTAAGGTACAATTGCTAGGCA
98885850 TACACCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (21 bp):
CTAAGGTACAATTGCTAGGCA
Found at i:98886315 original size:20 final size:20
Alignment explanation
Indices: 98886266--98886319 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
98886256 AGAAGAGATT
*
98886266 TATGTAACTATTTTTTAATAA
1 TATGT-ACTATTTTTAAATAA
*
98886287 TAATGGTACTATTTTTAAATTA
1 T-AT-GTACTATTTTTAAATAA
98886309 TATGTACTATT
1 TATGTACTATT
98886320 ATTGTTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 8 0.28
21 3 0.10
22 16 0.55
23 2 0.07
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.52
Consensus pattern (20 bp):
TATGTACTATTTTTAAATAA
Found at i:98889996 original size:27 final size:27
Alignment explanation
Indices: 98889965--98890142 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
98889955 TAAATTGTAC
98889965 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
98889992 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98890018 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
98890046 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
98890074 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98890101 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
98890128 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
98890143 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:98890079 original size:82 final size:81
Alignment explanation
Indices: 98889966--98890121 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
98889956 AAATTGTACA
* *
98889966 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
98890030 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
98890047 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
98890112 TGCGAGTTGA
65 TGCGAATTGA
98890122 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:98890133 original size:82 final size:81
Alignment explanation
Indices: 98889962--98890142 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
98889952 GATTAAATTG
* *
98889962 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
98890027 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
98890043 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
98890107 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
98890125 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
98890143 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:98895562 original size:68 final size:69
Alignment explanation
Indices: 98895490--98895647 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 69
98895480 CATCATGTGT
* ** * * *
98895490 ACAAGAGAGCTACGAGATA-CTATGTAGTAGCTAGGTCACATGTGTGAT-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATAGATAAAT-GTAGCTAGGTCACATGTGTCATCAAGGGATGGA-CACC
98895552 ATGTAG
64 ATGTAG
* * * *
98895558 ACAAGAGAGTTACGAGAGAGATAAATGTAGCTAGGTCGCATGTGTCATCCCAAGTGATGGACACC
1 ACAAGAGAGCTACGAGATAGATAAATGTAGCTAGGTCACATGTGTCAT--CAAGGGATGGACACC
98895623 ATGTAG
64 ATGTAG
98895629 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
98895648 AATTGGCTAG
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
68 37 0.51
69 3 0.04
70 1 0.01
71 32 0.44
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACGAGATAGATAAATGTAGCTAGGTCACATGTGTCATCAAGGGATGGACACCAT
GTAG
Found at i:98898119 original size:79 final size:81
Alignment explanation
Indices: 98898010--98898192 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
98898000 TACTCGTTCA
* *
98898010 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
98898073 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
98898090 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
98898153 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
98898169 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
98898193 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:98898192 original size:40 final size:40
Alignment explanation
Indices: 98897989--98898192 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
98897979 CGGAATTTAA
** *
98897989 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98898029 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98898069 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
98898108 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
98898148 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
98898188 CCGGA
1 CCGGA
98898193 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:98906651 original size:43 final size:43
Alignment explanation
Indices: 98906597--98906683 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
98906587 TGATATATGT
* *
98906597 AGCATCTGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCG
1 AGCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATGCG
*
98906640 AGCATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCG
1 AGCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATGCG
98906683 A
1 A
98906684 TACATGTGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (43 bp):
AGCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATGCG
Found at i:98910260 original size:28 final size:27
Alignment explanation
Indices: 98910198--98910261 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
98910188 TTGAATGAGT
*
98910198 TTTTGAAAA-TTTTTTTAAAATTAGGG
1 TTTTGAAAAGTTTTTCTAAAATTAGGG
* *
98910224 TTTTAAAAAGTTTTTCCTAAAATT-TGG
1 TTTTGAAAAGTTTTT-CTAAAATTAGGG
98910251 TTTTGGAAAAG
1 TTTT-GAAAAG
98910262 ATGATTTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 8 0.26
27 11 0.35
28 12 0.39
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (27 bp):
TTTTGAAAAGTTTTTCTAAAATTAGGG
Found at i:98926318 original size:15 final size:15
Alignment explanation
Indices: 98926282--98926311 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98926272 GAATTGAGAA
98926282 AGAAAAATTTCAGAG
1 AGAAAAATTTCAGAG
98926297 AGAAAAATTTCAGAG
1 AGAAAAATTTCAGAG
98926312 TGCAAAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (15 bp):
AGAAAAATTTCAGAG
Found at i:98929345 original size:167 final size:167
Alignment explanation
Indices: 98929069--98929403 Score: 661
Period size: 167 Copynumber: 2.0 Consensus size: 167
98929059 GCTAATTGTG
98929069 TCACTGTCACCTTAAAAATCATATCTTGAGTTCTAAAACTCGAAAATCAGTTTTGTAATTTTTCC
1 TCACTGTCACCTTAAAAATCATATCTTGAGTTCTAAAACTCGAAAATCAGTTTTGTAATTTTTCC
98929134 CTGAAACTAGACTCATATTTCCATCTACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGT
66 CTGAAACTAGACTCATATTTCCATCTACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGT
*
98929199 ACAGTTTATTAGTTAATGTCTCCCCTGTTACAGGGTA
131 ACAGTTTATTAGTTAAAGTCTCCCCTGTTACAGGGTA
98929236 TCACTGTCACCTTAAAAATCATATCTTGAGTTCTAAAACTCGAAAATCAGTTTTGTAATTTTTCC
1 TCACTGTCACCTTAAAAATCATATCTTGAGTTCTAAAACTCGAAAATCAGTTTTGTAATTTTTCC
98929301 CTGAAACTAGACTCATATTTCCATCTACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGT
66 CTGAAACTAGACTCATATTTCCATCTACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGT
98929366 ACAGTTTATTAGTTAAAGTCTCCCCTGTTACAGGGTA
131 ACAGTTTATTAGTTAAAGTCTCCCCTGTTACAGGGTA
98929403 T
1 T
98929404 GACTACACTG
Statistics
Matches: 167, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
167 167 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (167 bp):
TCACTGTCACCTTAAAAATCATATCTTGAGTTCTAAAACTCGAAAATCAGTTTTGTAATTTTTCC
CTGAAACTAGACTCATATTTCCATCTACATATTTTTTTCTAGAATTTTTGGTCAGGCCAATTAGT
ACAGTTTATTAGTTAAAGTCTCCCCTGTTACAGGGTA
Found at i:98930080 original size:73 final size:73
Alignment explanation
Indices: 98929961--98930106 Score: 274
Period size: 73 Copynumber: 2.0 Consensus size: 73
98929951 CCATTTTCGC
98929961 ATGGCTATCCAAATTTACACAATACCGAAGGGTTCATGACCAACAACAAAAGGGTGGTCCTATAC
1 ATGGCTATCCAAATTTACACAATACCGAAGGGTTCATGACCAACAACAAAAGGGTGGTCCTATAC
*
98930026 ATGCCATT
66 ATACCATT
*
98930034 ATGGCTATCCAAATTTACACAATACCGAAGGGTTCATGACCAACAACGAAAGGGTGGTCCTATAC
1 ATGGCTATCCAAATTTACACAATACCGAAGGGTTCATGACCAACAACAAAAGGGTGGTCCTATAC
98930099 ATACCATT
66 ATACCATT
98930107 TCAAAGTTCA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (73 bp):
ATGGCTATCCAAATTTACACAATACCGAAGGGTTCATGACCAACAACAAAAGGGTGGTCCTATAC
ATACCATT
Done.