Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 30 of 310
Found at i:8125731 original size:27 final size:28
Alignment explanation
Indices: 8125672--8125746 Score: 82
Period size: 27 Copynumber: 2.6 Consensus size: 28
8125662 TTTTATAAAT
*
8125672 TTTATTATATGTTATATTTTATTATATGTTA
1 TTTATTCTAT-TTATATTTTATTATA--TTA
8125703 TTTATTCTATTTATATTTTATTATA-TA
1 TTTATTCTATTTATATTTTATTATATTA
*
8125730 TTGT-TTCTATATATATT
1 TT-TATTCTATTTATATT
8125747 GATTATTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 16 0.39
28 1 0.02
30 15 0.37
31 9 0.22
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTATTCTATTTATATTTTATTATATTA
Found at i:8127435 original size:28 final size:28
Alignment explanation
Indices: 8127395--8127464 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
8127385 AGGTAACATC
* * *
8127395 TAAAATCTGAAAAATATGGATTATATTG
1 TAAAATCTGAAAAATATGGATAAAATTA
* *
8127423 TAAAATTTGAAAAATATGGGTAAAATTA
1 TAAAATCTGAAAAATATGGATAAAATTA
8127451 TAAAATCTGAAAAA
1 TAAAATCTGAAAAA
8127465 AGGGGCAGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.13, T:0.31
Consensus pattern (28 bp):
TAAAATCTGAAAAATATGGATAAAATTA
Found at i:8130296 original size:92 final size:91
Alignment explanation
Indices: 8130138--8130428 Score: 341
Period size: 92 Copynumber: 3.2 Consensus size: 91
8130128 ATTGAGATTG
* * *
8130138 ACTGAACTGGCAGTTTTATTGCAATATAT-AGGTATAGCGGATTACTGCATTGCACTATACCACA
1 ACTGAACTGGCAGTTTTACTGCAATATATCA-GTATAGCGGATTAC-GCATTGCACTGTACCGCA
8130202 TGTACGTTAGCTACGCTACGTACCATTA
64 TGTACGTTAGCTACGCTACGTACCATTA
* ** *
8130230 ACTGAACTGGTAGTTTTACTATAATATATCAGTATAGCGGATTATCGTATTGCACTGTACCGCAT
1 ACTGAACTGGCAGTTTTACTGCAATATATCAGTATAGCGGATTA-CGCATTGCACTGTACCGCAT
* * * *
8130295 GTACATTAGATACACTACGTACCATTG
65 GTACGTTAGCTACGCTACGTACCATTA
* * * * * * **
8130322 GCTGAACTGGCAATTTTACTGCAATCTATCGGTATAGCAGATTACCACATTGCACTGTGTCGCAT
1 ACTGAACTGGCAGTTTTACTGCAATATATCAGTATAGCGGATTA-CGCATTGCACTGTACCGCAT
*
8130387 GTACGTTAGCTACGCTACATACCATTA
65 GTACGTTAGCTACGCTACGTACCATTA
* *
8130414 TCTGATCTGGCAGTT
1 ACTGAACTGGCAGTT
8130429 CATACTGTAT
Statistics
Matches: 165, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
92 163 0.99
93 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (91 bp):
ACTGAACTGGCAGTTTTACTGCAATATATCAGTATAGCGGATTACGCATTGCACTGTACCGCATG
TACGTTAGCTACGCTACGTACCATTA
Found at i:8134789 original size:10 final size:10
Alignment explanation
Indices: 8134774--8134850 Score: 68
Period size: 10 Copynumber: 7.7 Consensus size: 10
8134764 TCCTACTCTG
8134774 TTCTGTTCTA
1 TTCTGTTCTA
*
8134784 TTCTGTTCTG
1 TTCTGTTCTA
*
8134794 TAT-TGCTCTA
1 T-TCTGTTCTA
* *
8134804 CTCTGTTCCA
1 TTCTGTTCTA
8134814 -TCTTGTTCTA
1 TTC-TGTTCTA
*
8134824 TTCTGCTCTA
1 TTCTGTTCTA
8134834 TTCTGTTCTA
1 TTCTGTTCTA
*
8134844 TTTTGTT
1 TTCTGTT
8134851 TGAATTGTAT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
9 3 0.06
10 47 0.89
11 3 0.06
ACGTcount: A:0.09, C:0.22, G:0.12, T:0.57
Consensus pattern (10 bp):
TTCTGTTCTA
Found at i:8134811 original size:30 final size:30
Alignment explanation
Indices: 8134775--8134850 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
8134765 CCTACTCTGT
*
8134775 TCTGTTCTATTCTGTTCTGTAT-TGCTCTAC
1 TCTGTTCTATTCTGTTCTAT-TCTGCTCTAC
* *
8134805 TCTGTTCCA-TCTTGTTCTATTCTGCTCTAT
1 TCTGTTCTATTC-TGTTCTATTCTGCTCTAC
*
8134835 TCTGTTCTATTTTGTT
1 TCTGTTCTATTCTGTT
8134851 TGAATTGTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 3 0.08
30 34 0.89
31 1 0.03
ACGTcount: A:0.09, C:0.22, G:0.12, T:0.57
Consensus pattern (30 bp):
TCTGTTCTATTCTGTTCTATTCTGCTCTAC
Found at i:8134889 original size:15 final size:15
Alignment explanation
Indices: 8134844--8134894 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
8134834 TTCTGTTCTA
*
8134844 TTTTG-TTTGAATTG
1 TTTTGTTTTGATTTG
* *
8134858 TATTGTTTTGATCTG
1 TTTTGTTTTGATTTG
*
8134873 TTTTGTTTTGCTTTG
1 TTTTGTTTTGATTTG
*
8134888 TTATGTT
1 TTTTGTT
8134895 GTACTACCTC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
14 4 0.14
15 25 0.86
ACGTcount: A:0.10, C:0.04, G:0.20, T:0.67
Consensus pattern (15 bp):
TTTTGTTTTGATTTG
Found at i:8136157 original size:20 final size:20
Alignment explanation
Indices: 8136128--8136169 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8136118 AATATGACTG
* **
8136128 TAATGGAATAGAGTTGTAAT
1 TAATGAAATAGAAATGTAAT
8136148 TAATGAAATAGAAATGTAAT
1 TAATGAAATAGAAATGTAAT
8136168 TA
1 TA
8136170 GTAATTCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (20 bp):
TAATGAAATAGAAATGTAAT
Found at i:8136449 original size:23 final size:23
Alignment explanation
Indices: 8136423--8136466 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8136413 AGTAAAATAT
8136423 TTAATAAATATAG-TAATTTTTAA
1 TTAATAAATA-AGTTAATTTTTAA
*
8136446 TTAATATATAAGTTAATTTTT
1 TTAATAAATAAGTTAATTTTT
8136467 CTTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (23 bp):
TTAATAAATAAGTTAATTTTTAA
Found at i:8137774 original size:36 final size:36
Alignment explanation
Indices: 8137727--8137802 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
8137717 CGGAGGGACC
8137727 AATTGGACATATATAAGTTTGGCTTAAATAATTTGT
1 AATTGGACATATATAAGTTTGGCTTAAATAATTTGT
8137763 AATTGGACATATATAAGTTTGGCTTAAATAATTTGT
1 AATTGGACATATATAAGTTTGGCTTAAATAATTTGT
8137799 AATT
1 AATT
8137803 AACTTTCAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (36 bp):
AATTGGACATATATAAGTTTGGCTTAAATAATTTGT
Found at i:8143757 original size:27 final size:26
Alignment explanation
Indices: 8143709--8143840 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 26
8143699 GCGAGGCTGC
* *
8143709 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
8143735 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
8143762 CAGATAATTGTGGCATAGCCACCAGGA-
1 CAGAT-ATTGTGGCAGAGCCACCA-GAT
*
8143789 CAGATATATGTGGTAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* *
8143816 CAGATAATTGTAGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
8143841 GACGCTTCCT
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.10
27 77 0.85
28 5 0.05
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:8143801 original size:54 final size:53
Alignment explanation
Indices: 8143735--8143843 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 53
8143725 GTCACCAGAT
*
8143735 ACAGATATTGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGG
1 ACAGATATTGTGGCAGAGCCACCAGATCAGATAATTGTAGCATAGCCACCAGG
*
8143788 ACAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTAGCATAGCCACCAGG
1 ACAGATAT-TGTGGCAGAGCCACCAGATCAGATAATTGTAGCATAGCCACCAGG
8143842 AC
1 AC
8143844 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 8 0.15
54 45 0.85
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (53 bp):
ACAGATATTGTGGCAGAGCCACCAGATCAGATAATTGTAGCATAGCCACCAGG
Found at i:8144246 original size:8 final size:8
Alignment explanation
Indices: 8144229--8144259 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8144219 TCTCAAAATA
8144229 TCGGCTTT
1 TCGGCTTT
*
8144237 TCGGCATT
1 TCGGCTTT
8144245 TCGGCTTT
1 TCGGCTTT
8144253 TCGGCTT
1 TCGGCTT
8144260 GTGCCGATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.26, G:0.26, T:0.45
Consensus pattern (8 bp):
TCGGCTTT
Found at i:8152906 original size:21 final size:21
Alignment explanation
Indices: 8152871--8152919 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
8152861 ATAAATAAAA
*
8152871 TCATTCA-TGTCAATTCCCTG
1 TCATTCACTATCAATTCCCTG
*
8152891 TCATTCACTATCAATTTCCTG
1 TCATTCACTATCAATTCCCTG
8152912 TCATTCAC
1 TCATTCAC
8152920 AACTTCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.41
Consensus pattern (21 bp):
TCATTCACTATCAATTCCCTG
Found at i:8156602 original size:20 final size:19
Alignment explanation
Indices: 8156557--8156603 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
8156547 GTAATATAGT
*
8156557 TATTATTTTAAATGTTTTGA
1 TATTA-TTTAAATGATTTGA
*
8156577 TGTTATTTAAATGATTTGA
1 TATTATTTAAATGATTTGA
8156596 TAATTATT
1 T-ATTATT
8156604 ATGAGATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
TATTATTTAAATGATTTGA
Found at i:8156955 original size:93 final size:93
Alignment explanation
Indices: 8156796--8157301 Score: 1003
Period size: 93 Copynumber: 5.4 Consensus size: 93
8156786 GGAATATTTG
8156796 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
8156861 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
8156889 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
8156954 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
8156982 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
8157047 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
8157075 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
8157140 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
8157168 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
8157233 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
8157261 GGGATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8157302 GTGGGTTACA
Statistics
Matches: 412, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 412 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:8157695 original size:223 final size:223
Alignment explanation
Indices: 8157302--8157716 Score: 661
Period size: 223 Copynumber: 1.9 Consensus size: 223
8157292 TCACTTATGG
*
8157302 GTGGGTTACATGGTAGCTTGGCTACATATGTGGCACTTATGTGCAAACTTTCCATGTATCCGAGT
1 GTGGGTTACATGGTAGCTTGGCTACATATGTGGCACTTATGTGCAAACTTTCCATGTATCCGAAT
* * * *
8157367 TATATTCCGATGTGTTCAACGGGTAAAATTCTAGTGAAATGGAAGAATACTCAAGATGCAAGTGA
66 TATATTCCGATGTGTTCAACGGGTAAAATTCTACTCAAATGGAAGAATACTCAAGATGAAAGGGA
* * * * * *
8157432 CATATTGGTAAGTGTTGTGGAATGGGCACTTTGGACAGGTATGTACTTAACCCCCGGGTTGAGAT
131 CATACTGATAAATGTTGTGAAATGGACACTTTGAACAGGTATGTACTTAACCCCCGGGTTGAGAT
8157497 TTGATACGACAACAATAATGTAGTAAGA
196 TTGATACGACAACAATAATGTAGTAAGA
*
8157525 GTGGGTTACATGGTAGCTTGGCTACATATGTGGCACTTATGTTCAAACTTTCCATGTATCCGAAT
1 GTGGGTTACATGGTAGCTTGGCTACATATGTGGCACTTATGTGCAAACTTTCCATGTATCCGAAT
* *
8157590 TATATTCCGATGTGTTC-ACTGGGTAAAATTCTACTCAAATGGAGGAATACTCGAGATGAAAGGG
66 TATATTCCGATGTGTTCAAC-GGGTAAAATTCTACTCAAATGGAAGAATACTCAAGATGAAAGGG
* * *
8157654 ACGTACTGATAAATGTTGTGAAATGGATACTTTGAACAGGTATGTACTTAACCCTCGGGTTGA
130 ACATACTGATAAATGTTGTGAAATGGACACTTTGAACAGGTATGTACTTAACCCCCGGGTTGA
8157717 AAACTCGACA
Statistics
Matches: 174, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
222 2 0.01
223 172 0.99
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (223 bp):
GTGGGTTACATGGTAGCTTGGCTACATATGTGGCACTTATGTGCAAACTTTCCATGTATCCGAAT
TATATTCCGATGTGTTCAACGGGTAAAATTCTACTCAAATGGAAGAATACTCAAGATGAAAGGGA
CATACTGATAAATGTTGTGAAATGGACACTTTGAACAGGTATGTACTTAACCCCCGGGTTGAGAT
TTGATACGACAACAATAATGTAGTAAGA
Found at i:8163391 original size:50 final size:50
Alignment explanation
Indices: 8163318--8163416 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
8163308 CTTTTACTCA
8163318 TATTCTCGTAAACCTACCAATCCCCCTTAAGATCAAAGTAGTGTCATACG
1 TATTCTCGTAAACCTACCAATCCCCCTTAAGATCAAAGTAGTGTCATACG
* * *
8163368 TATTCTTGTAAACTTACCGATCCCCCTTAAGATCAAAGTAGTGTCATAC
1 TATTCTCGTAAACCTACCAATCCCCCTTAAGATCAAAGTAGTGTCATAC
8163417 TCCATAAAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.30
Consensus pattern (50 bp):
TATTCTCGTAAACCTACCAATCCCCCTTAAGATCAAAGTAGTGTCATACG
Found at i:8164129 original size:43 final size:44
Alignment explanation
Indices: 8164082--8164167 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
8164072 TATATAAATT
*
8164082 TATAATACTCATTAACATACATAAAAAACTATAT-T-AAATATGG
1 TATAATACTCATTAACACACATAAAAAA-TATATATGAAATATGG
8164125 TATAATACTCATTAACACACATAAAAAATATATATGAAATATG
1 TATAATACTCATTAACACACATAAAAAATATATATGAAATATG
8164168 ATTTTACTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
42 5 0.12
43 28 0.70
44 7 0.17
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (44 bp):
TATAATACTCATTAACACACATAAAAAATATATATGAAATATGG
Found at i:8164572 original size:3 final size:3
Alignment explanation
Indices: 8164564--8164604 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
8164554 TAACCAAAGC
8164564 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8164605 TCAATGGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8166370 original size:19 final size:19
Alignment explanation
Indices: 8166346--8166386 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
8166336 CTTTTTCATC
8166346 TTTTTAAGGGTAGTTTACT
1 TTTTTAAGGGTAGTTTACT
*
8166365 TTTTTAAGGTTAGTTTACT
1 TTTTTAAGGGTAGTTTACT
8166384 TTT
1 TTT
8166387 ATGATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.05, G:0.17, T:0.59
Consensus pattern (19 bp):
TTTTTAAGGGTAGTTTACT
Found at i:8170022 original size:133 final size:133
Alignment explanation
Indices: 8169876--8170150 Score: 532
Period size: 133 Copynumber: 2.1 Consensus size: 133
8169866 CATTTAGTTT
*
8169876 ATATATATATACATATATAATTTGTAGCATATAAGGAATTAAATATATATGGTACTATAATGTAA
1 ATATATATATACATATATAATTTGTAGCATATAAGGAATTAAATATATATGGCACTATAATGTAA
8169941 ATGCTAAAAATATATTAAGTTATTTATGTTTAAAAATTTAATAAGCGAAATGCATATAATGGTAG
66 ATGCTAAAAATATATTAAGTTATTTATGTTTAAAAATTTAATAAGCGAAATGCATATAATGGTAG
8170006 TAA
131 TAA
8170009 ATATATATATACATATATAATTTGTAGCATATAAGGAATTAAATATATATGGCACTATAATGTAA
1 ATATATATATACATATATAATTTGTAGCATATAAGGAATTAAATATATATGGCACTATAATGTAA
*
8170074 ATGCTAAAAATATATTAAGTTATTTATGTTTAGAAATTTAATAAGCGAAATGCATATAATGGTAG
66 ATGCTAAAAATATATTAAGTTATTTATGTTTAAAAATTTAATAAGCGAAATGCATATAATGGTAG
8170139 TAA
131 TAA
8170142 ATATATATA
1 ATATATATA
8170151 ACTAATTATT
Statistics
Matches: 140, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 140 1.00
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (133 bp):
ATATATATATACATATATAATTTGTAGCATATAAGGAATTAAATATATATGGCACTATAATGTAA
ATGCTAAAAATATATTAAGTTATTTATGTTTAAAAATTTAATAAGCGAAATGCATATAATGGTAG
TAA
Found at i:8175442 original size:24 final size:24
Alignment explanation
Indices: 8175414--8175465 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8175404 TTAGGAAGTC
* *
8175414 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8175438 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8175462 AAAT
1 AAAT
8175466 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8177404 original size:24 final size:24
Alignment explanation
Indices: 8177376--8177427 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8177366 TTAGCAAGTC
* *
8177376 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8177400 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8177424 AAAT
1 AAAT
8177428 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8178820 original size:17 final size:18
Alignment explanation
Indices: 8178777--8178821 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
8178767 GTATCTTTTT
* *
8178777 ATTTTTTTTACTTTTTTG
1 ATTTTTTTTACTTATTTC
8178795 ATTTTTTTT-CTTATTTC
1 ATTTTTTTTACTTATTTC
8178812 ATTTTTTTTA
1 ATTTTTTTTA
8178822 TTTTGTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (18 bp):
ATTTTTTTTACTTATTTC
Found at i:8178842 original size:10 final size:9
Alignment explanation
Indices: 8178772--8178843 Score: 74
Period size: 9 Copynumber: 7.9 Consensus size: 9
8178762 AAATTGTATC
8178772 TTTTTATTT
1 TTTTTATTT
*
8178781 TTTTTACTT
1 TTTTTATTT
*
8178790 TTTTGATTT
1 TTTTTATTT
*
8178799 TTTTT-CTT
1 TTTTTATTT
* *
8178807 ATTTCATTT
1 TTTTTATTT
8178816 TTTTTATTT
1 TTTTTATTT
8178825 TGTTTTATTT
1 T-TTTTATTT
8178835 TTTATTATT
1 TTT-TTATT
8178844 AACTTTAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
8 5 0.10
9 31 0.62
10 14 0.28
ACGTcount: A:0.12, C:0.04, G:0.03, T:0.81
Consensus pattern (9 bp):
TTTTTATTT
Found at i:8178843 original size:34 final size:34
Alignment explanation
Indices: 8178777--8178843 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
8178767 GTATCTTTTT
*
8178777 ATTTTTTTTACTTTTTTGATTTTTTTTCTTATTTC
1 ATTTTTTTTACTTTTTT-ATTTTTTTTATTATTTC
8178812 ATTTTTTTTA-TTTTGTT-TTATTTTTTATTATT
1 ATTTTTTTTACTTTT-TTATT-TTTTTTATTATT
8178844 AACTTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 2 0.07
34 15 0.52
35 12 0.41
ACGTcount: A:0.13, C:0.04, G:0.03, T:0.79
Consensus pattern (34 bp):
ATTTTTTTTACTTTTTTATTTTTTTTATTATTTC
Found at i:8178894 original size:22 final size:22
Alignment explanation
Indices: 8178869--8178929 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
8178859 GTAATGTATA
8178869 TTTAAAATGTTTTA-TAATATTT
1 TTTAAAAT-TTTTATTAATATTT
* *
8178891 TTTAAAATTTTAATTATTATTT
1 TTTAAAATTTTTATTAATATTT
*
8178913 TTAAAAATATTTT-TTAA
1 TTTAAAAT-TTTTATTAA
8178930 CTTTAGATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 4 0.12
22 25 0.78
23 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTAAAATTTTTATTAATATTT
Found at i:8179005 original size:36 final size:35
Alignment explanation
Indices: 8178887--8179028 Score: 139
Period size: 36 Copynumber: 4.0 Consensus size: 35
8178877 GTTTTATAAT
* *
8178887 ATTTTTTAAAATTTTAATTATTATTTTTAAAAAT-
1 ATTTTTTAAAATTTTAAATATTATTTTTAAAATTA
* * * *
8178921 ATTTTTT--AACTTTAGATATGTATTTGTGAAATTA
1 ATTTTTTAAAATTTTAAATAT-TATTTTTAAAATTA
* *
8178955 A-TTTTTATATATTTTAAAAATGTATTTTTAAAATTA
1 ATTTTTTA-AAATTTTAAATAT-TATTTTTAAAATTA
8178991 ATTTTTTAAAATTTTAAATATTAATTTTTAAATATTA
1 ATTTTTTAAAATTTTAAATATT-ATTTTTAAA-ATTA
8179028 A
1 A
8179029 CCATATTTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
32 9 0.10
33 15 0.17
34 8 0.09
35 1 0.01
36 42 0.49
37 11 0.13
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.56
Consensus pattern (35 bp):
ATTTTTTAAAATTTTAAATATTATTTTTAAAATTA
Found at i:8179019 original size:14 final size:14
Alignment explanation
Indices: 8179002--8179028 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8178992 TTTTTTAAAA
8179002 TTTTAAATATTAAT
1 TTTTAAATATTAAT
8179016 TTTTAAATATTAA
1 TTTTAAATATTAA
8179029 CCATATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTAAATATTAAT
Found at i:8179035 original size:23 final size:23
Alignment explanation
Indices: 8178982--8179028 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
8178972 AAATGTATTT
*
8178982 TTAAA-ATTAATTTTTTAAAATT
1 TTAAATATTAATTTTTTAAAATA
8179004 TTAAATATTAA-TTTTT-AAATA
1 TTAAATATTAATTTTTTAAAATA
8179025 TTAA
1 TTAA
8179029 CCATATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.35
22 10 0.43
23 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TTAAATATTAATTTTTTAAAATA
Found at i:8179110 original size:21 final size:19
Alignment explanation
Indices: 8179080--8179126 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
8179070 TTTTAAATAC
* *
8179080 AATTTCTTTAATTTCTTTTT
1 AATTTTTTTAACTT-TTTTT
8179100 ACATTTTTTTAACTTTTTTT
1 A-ATTTTTTTAACTTTTTTT
8179120 AATTTTT
1 AATTTTT
8179127 GAAAAGTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 7 0.29
21 11 0.46
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (19 bp):
AATTTTTTTAACTTTTTTT
Found at i:8179310 original size:67 final size:67
Alignment explanation
Indices: 8179185--8179310 Score: 148
Period size: 67 Copynumber: 1.9 Consensus size: 67
8179175 CCAGTTCAAA
* * ** *
8179185 TATTAAACATACATTTCAAATTGTTTGTAAAATAAAATTTAAAAAATTGTATGTAAAATTAATAA
1 TATTAAACATACATTTCAAATTGATTATAAAATAAAATTTAAAAAATAATATGAAAAATTAATAA
8179250 AG
66 AG
* * *
8179252 TATTAAACATACATTTCAAA-T-ATTATAAAACTAATAATTTCAAAACTAATTTGAAAAAT
1 TATTAAACATACATTTCAAATTGATTATAAAA-TAA-AATTTAAAAAATAATATGAAAAAT
8179311 ATATATTTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
65 7 0.14
66 4 0.08
67 38 0.78
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.37
Consensus pattern (67 bp):
TATTAAACATACATTTCAAATTGATTATAAAATAAAATTTAAAAAATAATATGAAAAATTAATAA
AG
Found at i:8179340 original size:37 final size:37
Alignment explanation
Indices: 8179293--8179401 Score: 122
Period size: 37 Copynumber: 3.1 Consensus size: 37
8179283 TAATAATTTC
* *
8179293 AAAACTAATTTGAAAAATATATATTTAAAATTTATAA
1 AAAAATAATTTCAAAAATATATATTTAAAATTTATAA
* *
8179330 AAAAATAATTTCAAAAATATATATCT-AAA-GT-T-A
1 AAAAATAATTTCAAAAATATATATTTAAAATTTATAA
* *
8179363 AAAAATAATTTTAAAAATA-ATAATTAAAATTTA-AA
1 AAAAATAATTTCAAAAATATATATTTAAAATTTATAA
8179398 AAAA
1 AAAA
8179402 TTGTAAAACA
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
32 4 0.07
33 22 0.37
34 2 0.03
35 6 0.10
36 3 0.05
37 23 0.38
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (37 bp):
AAAAATAATTTCAAAAATATATATTTAAAATTTATAA
Found at i:8179346 original size:24 final size:24
Alignment explanation
Indices: 8179264--8179352 Score: 60
Period size: 24 Copynumber: 3.7 Consensus size: 24
8179254 TTAAACATAC
* *
8179264 ATTTCAAATA-TTATAAAACTAATA
1 ATTTCAAAAATTTATAAAA-AAATA
* *
8179288 ATTTCAAAACTAATTT-GAAAAATATA
1 ATTTC-AAA--AATTTATAAAAAAATA
8179314 TATTT--AAAATTTATAAAAAAATA
1 -ATTTCAAAAATTTATAAAAAAATA
*
8179337 ATTTCAAAAATATATA
1 ATTTCAAAAATTTATA
8179353 TCTAAAGTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
22 9 0.18
23 8 0.16
24 16 0.32
25 3 0.06
26 3 0.06
27 9 0.18
28 2 0.04
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (24 bp):
ATTTCAAAAATTTATAAAAAAATA
Found at i:8179371 original size:33 final size:37
Alignment explanation
Indices: 8179293--8179402 Score: 110
Period size: 33 Copynumber: 3.2 Consensus size: 37
8179283 TAATAATTTC
* * * *
8179293 AAAACTAATTTGAAAAATATATATTTAAAATTTATAA
1 AAAAATAATTTCAAAAATATATATCTAAAATGTATAA
8179330 AAAAATAATTTCAAAAATATATATCT-AAA-GT-T-A
1 AAAAATAATTTCAAAAATATATATCTAAAATGTATAA
*
8179363 AAAAATAATTTTAAAAATA-ATAAT-TAAAAT-T-TAA
1 AAAAATAATTTCAAAAATATAT-ATCTAAAATGTATAA
8179397 AAAAAT
1 AAAAAT
8179403 TGTAAAACAT
Statistics
Matches: 64, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
32 3 0.05
33 26 0.41
34 8 0.12
35 1 0.02
36 3 0.05
37 23 0.36
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (37 bp):
AAAAATAATTTCAAAAATATATATCTAAAATGTATAA
Found at i:8179484 original size:36 final size:36
Alignment explanation
Indices: 8179444--8179517 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
8179434 TTTTAAAATT
8179444 AATAATAT-AAA-TTAAATAAACAAAATAAAATAAGAA
1 AATAATATAAAACTTAAA-AAACAAAA-AAAATAAGAA
* *
8179480 AATAATATAAAACTTAAAAAAGAAAAAAATTAAGAA
1 AATAATATAAAACTTAAAAAACAAAAAAAATAAGAA
8179516 AA
1 AA
8179518 AGACAAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 19 0.56
37 10 0.29
38 5 0.15
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.20
Consensus pattern (36 bp):
AATAATATAAAACTTAAAAAACAAAAAAAATAAGAA
Found at i:8179489 original size:18 final size:18
Alignment explanation
Indices: 8179439--8179491 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
8179429 AATTTTTTTA
* *
8179439 AAATTAATAATATAAATT
1 AAATAAATAATATAAAAT
* *
8179457 AAATAAACAAAATAAAAT
1 AAATAAATAATATAAAAT
8179475 AAGA-AAATAATATAAAA
1 AA-ATAAATAATATAAAA
8179492 CTTAAAAAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (18 bp):
AAATAAATAATATAAAAT
Found at i:8179517 original size:18 final size:19
Alignment explanation
Indices: 8179494--8179546 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
8179484 ATATAAAACT
8179494 TAAAAAAGAAAAAAATTAA
1 TAAAAAAGAAAAAAATTAA
* * *
8179513 -GAAAAAGACAAAATTTAA
1 TAAAAAAGAAAAAAATTAA
8179531 TAAAAAAGTAAAAAAA
1 TAAAAAAG-AAAAAAA
8179547 AGGGTGGCAG
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
18 15 0.58
19 6 0.23
20 5 0.19
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (19 bp):
TAAAAAAGAAAAAAATTAA
Found at i:8179656 original size:20 final size:20
Alignment explanation
Indices: 8179628--8179674 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
8179618 CAAACTTTTC
8179628 AAAAA-TTAAAAA-AAAGTTA
1 AAAAATTTAAAAAGAAA-TTA
8179647 AAAAATTTAAAAAGAAATTA
1 AAAAATTTAAAAAGAAATTA
8179667 AAGAAATT
1 AA-AAATT
8179675 GTATTTACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.20
20 12 0.48
21 8 0.32
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.23
Consensus pattern (20 bp):
AAAAATTTAAAAAGAAATTA
Found at i:8179745 original size:14 final size:14
Alignment explanation
Indices: 8179726--8179752 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8179716 AAAAATATGG
8179726 TTAATATTTAAAAA
1 TTAATATTTAAAAA
8179740 TTAATATTTAAAA
1 TTAATATTTAAAA
8179753 TTTTAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:8179767 original size:37 final size:36
Alignment explanation
Indices: 8179726--8179868 Score: 141
Period size: 37 Copynumber: 4.0 Consensus size: 36
8179716 AAAAATATGG
8179726 TTAATATTTAAAAAT-TAATATTTAAAATTTTAAAAAA
1 TTAAT-TTTAAAAATAT-ATATTTAAAATTTTAAAAAA
* * *
8179763 TTAATTTGAAAAATATATTTTTAAAATATATAAAAAA
1 TTAATTTTAAAAATATATATTTAAAAT-TTTAAAAAA
* * * *
8179800 TTAATTTCACAAATATATATCT-AAA-GTTAAAAAA
1 TTAATTTTAAAAATATATATTTAAAATTTTAAAAAA
* * *
8179834 ATATTTTTAAAAATA-ATAATTAAAATTTTAAAAAA
1 TTAATTTTAAAAATATATATTTAAAATTTTAAAAAA
8179869 GTATTATAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
33 4 0.05
34 21 0.24
35 8 0.09
36 21 0.24
37 32 0.37
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (36 bp):
TTAATTTTAAAAATATATATTTAAAATTTTAAAAAA
Found at i:8180025 original size:17 final size:17
Alignment explanation
Indices: 8180003--8180058 Score: 75
Period size: 17 Copynumber: 3.5 Consensus size: 17
8179993 ATAAAAAAGT
8180003 AAAATAAAAGAAATATG
1 AAAATAAAAGAAATATG
8180020 AAAATAAAAG-AA-A--
1 AAAATAAAAGAAATATG
*
8180033 AAAACAAAAGAAATATG
1 AAAATAAAAGAAATATG
8180050 AAAATAAAA
1 AAAATAAAA
8180059 CAAAAAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 9 0.27
14 2 0.06
15 2 0.06
16 2 0.06
17 18 0.55
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAATAAAAGAAATATG
Found at i:8180075 original size:22 final size:22
Alignment explanation
Indices: 8180033--8180075 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8180023 ATAAAAGAAA
**
8180033 AAAACAAAAGAAATATGAAAAT
1 AAAACAAAAGAAATACAAAAAT
8180055 AAAACAAAAAGAAA-ACAAAAA
1 AAAAC-AAAAGAAATACAAAAA
8180076 GGTGTCAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.79, C:0.07, G:0.07, T:0.07
Consensus pattern (22 bp):
AAAACAAAAGAAATACAAAAAT
Found at i:8189858 original size:23 final size:23
Alignment explanation
Indices: 8189819--8189863 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8189809 ATATAAATCA
* *
8189819 TATAATAAATATAATATGTATTG
1 TATAATAAAAATAATATATATTG
8189842 TATAATTAAAAAT-ATATATATT
1 TATAA-TAAAAATAATATATATT
8189864 TAAATAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (23 bp):
TATAATAAAAATAATATATATTG
Found at i:8197479 original size:16 final size:17
Alignment explanation
Indices: 8197460--8197510 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 17
8197450 ATAAAAAATA
8197460 AATTA-TATAATAATTT
1 AATTACTATAATAATTT
8197476 AATTACTATAGATAAATTT
1 AATTACTATA-AT-AATTT
* *
8197495 TATTATTATAA-AATTT
1 AATTACTATAATAATTT
8197511 TATATGAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
16 10 0.33
17 4 0.13
18 3 0.10
19 13 0.43
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
AATTACTATAATAATTT
Found at i:8202275 original size:5 final size:6
Alignment explanation
Indices: 8202250--8202274 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8202240 TTATTTTTTC
8202250 AATAAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA A
8202275 TGTGTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:8203237 original size:30 final size:29
Alignment explanation
Indices: 8203203--8203259 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
8203193 ATTTACGAGC
8203203 CTAGGGGTAAAATCG-TCATTTTGTAAAAGT
1 CTAGGGGTAAAAT-GATCATTTT-TAAAAGT
8203233 CTAGGGGTAAAATGATCATTTTTAAAA
1 CTAGGGGTAAAATGATCATTTTTAAAA
8203260 TATGAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (29 bp):
CTAGGGGTAAAATGATCATTTTTAAAAGT
Found at i:8203649 original size:48 final size:48
Alignment explanation
Indices: 8203576--8203763 Score: 243
Period size: 48 Copynumber: 3.9 Consensus size: 48
8203566 GACATTGGGG
* *
8203576 TGATATGTGCGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCGT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCGT
* *
8203624 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGTCATAGCATCGGC-C
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCGT
** * * * *
8203671 ACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT
1 TGA-TATGTGCGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCGT
* * *
8203720 TGATAGGTGCGCTAGTGTAAGACCATGTCTAGGACGTAGCATCG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATAGCATCG
8203764 ACAGTGTAAG
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
47 1 0.01
48 115 0.98
49 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.26
Consensus pattern (48 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCGT
Found at i:8203760 original size:96 final size:96
Alignment explanation
Indices: 8203589--8203763 Score: 305
Period size: 96 Copynumber: 1.8 Consensus size: 96
8203579 TATGTGCGCT
*
8203589 AGTGTAAAACCATGTCTGGGACATGGCATCGGCGTTGATATGTGCGCTAGTGTAAGACCATGTCT
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTCT
* *
8203654 GGGTCATAGCATCGGCCACATTATGAGAGCC
66 AGGACATAGCATCGGCCACATTATGAGAGCC
*
8203685 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTCT
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTCT
*
8203750 AGGACGTAGCATCG
66 AGGACATAGCATCG
8203764 ACAGTGTAAG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (96 bp):
AGTGTAAAACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTCT
AGGACATAGCATCGGCCACATTATGAGAGCC
Found at i:8203795 original size:33 final size:33
Alignment explanation
Indices: 8203733--8203796 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
8203723 TAGGTGCGCT
*
8203733 AGTGTAAGACCATGTCTAGGACGTAGCATCGAC
1 AGTGTAAGACCATGTCTAGGACATAGCATCGAC
*
8203766 AGTGTAAGACCATGTCT-GGAACATGGCATCG
1 AGTGTAAGACCATGTCTAGG-ACATAGCATCG
8203797 GCCACATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (33 bp):
AGTGTAAGACCATGTCTAGGACATAGCATCGAC
Found at i:8203819 original size:81 final size:81
Alignment explanation
Indices: 8203684--8203832 Score: 210
Period size: 81 Copynumber: 1.8 Consensus size: 81
8203674 TTATGAGAGC
* *** * * * *
8203684 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTC
1 CAGTGTAAGACCATGTCTGGAACATGGCATCGGCGCACATACGAGAGCCAGTGTAAGACCATGTC
8203749 TAGGACGTAGCATCGA
66 TAGGACGTAGCATCGA
8203765 CAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CACATTACGAGAGCCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTGGAACATGGCATCGGCGCACA-TACGAGAGCCAGTGTAAGACCATGT
8203829 CTAG
65 CTAG
8203833 AACATGGTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (81 bp):
CAGTGTAAGACCATGTCTGGAACATGGCATCGGCGCACATACGAGAGCCAGTGTAAGACCATGTC
TAGGACGTAGCATCGA
Found at i:8203857 original size:48 final size:46
Alignment explanation
Indices: 8203765--8203875 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 46
8203755 GTAGCATCGA
*
8203765 CAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTACGAGAGC
1 CAGTGTAAGACCATGTCTAGAACATGGCATCGG-C-CATTACGAGAGC
* *
8203813 CAGTGTAAGACCATGTCTAGAACATGGTATTGG-CATTGAGACGAGAGC
1 CAGTGTAAGACCATGTCTAGAACATGGCATCGGCCATT---ACGAGAGC
* *
8203861 TAGTTTAAGACCATG
1 CAGTGTAAGACCATG
8203876 CTTGGGACAT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
45 4 0.07
48 51 0.93
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTAGAACATGGCATCGGCCATTACGAGAGC
Found at i:8203870 original size:129 final size:129
Alignment explanation
Indices: 8203637--8203875 Score: 352
Period size: 129 Copynumber: 1.9 Consensus size: 129
8203627 TATGTGCGCT
** *
8203637 AGTGTAAGACCATGTCTGGGTCATAGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGAACATAGCATCGGCCACATTACGAGAGCCAGTGTAAGACCATGTCT
* * * * * * *
8203702 GGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAGACCATGTCTAGGACGTAGCATCGAC
66 AGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACGTAGCATCGAC
*
8203766 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTACGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGAACATAGCATCGGCCACATTACGAGAGCCAGTGTAAGACCATGTCT
* * *
8203831 AGAACATGGTATTGGCATTGAGACGAGAGCTAGTTTAAGACCATG
66 AGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATG
8203876 CTTGGGACAT
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
129 96 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (129 bp):
AGTGTAAGACCATGTCTGGAACATAGCATCGGCCACATTACGAGAGCCAGTGTAAGACCATGTCT
AGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACGTAGCATCGAC
Found at i:8205661 original size:77 final size:77
Alignment explanation
Indices: 8205515--8205662 Score: 242
Period size: 77 Copynumber: 1.9 Consensus size: 77
8205505 CTTAATGTTC
**
8205515 AAGATTTAACTTACCGATAGCATTAAGAACTAAAGAGACCTAATTTTAACCAACAAACTCACTGC
1 AAGATTTAACTTACCGATAGCATTAAGAACTAAAGAGACCTAATTTTAACCAACAAACTCACCAC
8205580 AATGAGACGTTT
66 AATGAGACGTTT
* ** *
8205592 AAGATTTAACTTACCGATAGCATTAAGAACTAGAGAGGTCTAATTTTAACCAACAAACTCACCAT
1 AAGATTTAACTTACCGATAGCATTAAGAACTAAAGAGACCTAATTTTAACCAACAAACTCACCAC
8205657 AATGAG
66 AATGAG
8205663 GTTCATTTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 65 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (77 bp):
AAGATTTAACTTACCGATAGCATTAAGAACTAAAGAGACCTAATTTTAACCAACAAACTCACCAC
AATGAGACGTTT
Found at i:8206578 original size:19 final size:20
Alignment explanation
Indices: 8206542--8206581 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8206532 AAAAAGAATC
*
8206542 TTAAAAATAAATATAAATTA
1 TTAAAAATAAATAAAAATTA
*
8206562 TTAAAAAT-ATTAAAAATTA
1 TTAAAAATAAATAAAAATTA
8206581 T
1 T
8206582 GTTAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAAAAATAAATAAAAATTA
Found at i:8208285 original size:59 final size:58
Alignment explanation
Indices: 8208193--8208309 Score: 216
Period size: 59 Copynumber: 2.0 Consensus size: 58
8208183 TTTGTGGGAT
8208193 TGTAGGGCACACAACACAAAAATGTGTTAAACAAGCCGAATGTGTGGATTAGGGAAAG
1 TGTAGGGCACACAACACAAAAATGTGTTAAACAAGCCGAATGTGTGGATTAGGGAAAG
*
8208251 NTGTAGGGCACACAACACAAAAATGTGTTAAACAAGCCGAATGTGTGGATTTGGGAAAG
1 -TGTAGGGCACACAACACAAAAATGTGTTAAACAAGCCGAATGTGTGGATTAGGGAAAG
8208310 AATAGATTCC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.20
Consensus pattern (58 bp):
TGTAGGGCACACAACACAAAAATGTGTTAAACAAGCCGAATGTGTGGATTAGGGAAAG
Found at i:8214865 original size:18 final size:18
Alignment explanation
Indices: 8214842--8214934 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
8214832 CCCAACTACT
*
8214842 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
8214860 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
* *
8214878 GTACACGTGAATAGTACT
1 GTATACGTGAATAGTACC
* *
8214896 ATATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
8214914 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
8214932 GTA
1 GTA
8214935 AACGGTCGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:8219894 original size:16 final size:16
Alignment explanation
Indices: 8219875--8219933 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
8219865 GGGTTTGTAA
8219875 TTTTTTAGGTTTGATTT
1 TTTTTTAGGTTTGA-TT
8219892 TTTTTTA--TTTGGATT
1 TTTTTTAGGTTT-GATT
* ** *
8219907 CTTTTTAAATTCGATT
1 TTTTTTAGGTTTGATT
8219923 TTTTTTAGGTT
1 TTTTTTAGGTT
8219934 GTGCTCTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 11 0.32
16 14 0.41
17 9 0.26
ACGTcount: A:0.15, C:0.03, G:0.14, T:0.68
Consensus pattern (16 bp):
TTTTTTAGGTTTGATT
Found at i:8219895 original size:15 final size:16
Alignment explanation
Indices: 8219856--8219887 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8219846 TTTTAATTTT
*
8219856 TAATTTTTTGGGTTTG
1 TAATTTTTTAGGTTTG
8219872 TAATTTTTTAGGTTTG
1 TAATTTTTTAGGTTTG
8219888 ATTTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.22, T:0.62
Consensus pattern (16 bp):
TAATTTTTTAGGTTTG
Found at i:8222191 original size:53 final size:47
Alignment explanation
Indices: 8222079--8222182 Score: 156
Period size: 47 Copynumber: 2.2 Consensus size: 47
8222069 GTGTCCAAAG
* *
8222079 AATT-TTTTTTTTTTGGTCATGCCATTGATGTTGGTTACACCCATTT
1 AATTGTTTTTTTTTTGGTCATGCCATTGATATTGGCTACACCCATTT
* *
8222125 AATTGTTTTTTTTTTGGTCTTGCCATTGATATTGGCTGCACCCATTT
1 AATTGTTTTTTTTTTGGTCATGCCATTGATATTGGCTACACCCATTT
*
8222172 AATTGTGTTTT
1 AATTGTTTTTT
8222183 GAATTTTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
46 4 0.08
47 48 0.92
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.53
Consensus pattern (47 bp):
AATTGTTTTTTTTTTGGTCATGCCATTGATATTGGCTACACCCATTT
Found at i:8224732 original size:30 final size:30
Alignment explanation
Indices: 8224696--8224795 Score: 91
Period size: 30 Copynumber: 3.3 Consensus size: 30
8224686 CATCTAGTTG
8224696 GAGCTTTGCAATTTTGTCACGTTATATTGA
1 GAGCTTTGCAATTTTGTCACGTTATATTGA
* * *
8224726 GAGCTTTGTCGCA--CTG-CTCGTTCATCTAGTTG-
1 GAGCTTTG-C-AATTTTGTCACGTT-A--TA-TTGA
8224758 GAGCTTTGCAATTTTGTCACGTTATATTGA
1 GAGCTTTGCAATTTTGTCACGTTATATTGA
8224788 GAGCTTTG
1 GAGCTTTG
8224796 TCGTGCGACA
Statistics
Matches: 54, Mismatches: 6, Indels: 20
0.68 0.08 0.25
Matches are distributed among these distances:
29 8 0.15
30 22 0.41
31 2 0.04
32 14 0.26
33 8 0.15
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.41
Consensus pattern (30 bp):
GAGCTTTGCAATTTTGTCACGTTATATTGA
Found at i:8224775 original size:62 final size:62
Alignment explanation
Indices: 8224678--8224798 Score: 242
Period size: 62 Copynumber: 2.0 Consensus size: 62
8224668 ATTTGGAGGT
8224678 TGCTCGTTCATCTAGTTGGAGCTTTGCAATTTTGTCACGTTATATTGAGAGCTTTGTCGCAC
1 TGCTCGTTCATCTAGTTGGAGCTTTGCAATTTTGTCACGTTATATTGAGAGCTTTGTCGCAC
8224740 TGCTCGTTCATCTAGTTGGAGCTTTGCAATTTTGTCACGTTATATTGAGAGCTTTGTCG
1 TGCTCGTTCATCTAGTTGGAGCTTTGCAATTTTGTCACGTTATATTGAGAGCTTTGTCG
8224799 TGCGACAAAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.41
Consensus pattern (62 bp):
TGCTCGTTCATCTAGTTGGAGCTTTGCAATTTTGTCACGTTATATTGAGAGCTTTGTCGCAC
Found at i:8243114 original size:16 final size:18
Alignment explanation
Indices: 8243083--8243115 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8243073 ATTTTTTAGA
8243083 TTTTTATAAATATTTATT
1 TTTTTATAAATATTTATT
8243101 TTTTTA-AAAT-TTTAT
1 TTTTTATAAATATTTAT
8243116 AAACTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTATAAATATTTATT
Found at i:8244618 original size:3 final size:3
Alignment explanation
Indices: 8244610--8244637 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8244600 AAGAGATAGT
8244610 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
8244638 GAGATAGCGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8248769 original size:14 final size:14
Alignment explanation
Indices: 8248732--8248770 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
8248722 ATTAGTAATT
8248732 ATTTAAGTTAATTAA
1 ATTTAA-TTAATTAA
* *
8248747 ATATGATTAATTAA
1 ATTTAATTAATTAA
8248761 ATTTAATTAA
1 ATTTAATTAA
8248771 CCTATAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (14 bp):
ATTTAATTAATTAA
Found at i:8253026 original size:19 final size:19
Alignment explanation
Indices: 8253002--8253039 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8252992 TTTCATGGTC
8253002 TAGCCTCTAGTAAGATGAA
1 TAGCCTCTAGTAAGATGAA
8253021 TAGCCTCTAGTAAGATGAA
1 TAGCCTCTAGTAAGATGAA
8253040 AACTAGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (19 bp):
TAGCCTCTAGTAAGATGAA
Found at i:8267975 original size:53 final size:52
Alignment explanation
Indices: 8267894--8268050 Score: 172
Period size: 53 Copynumber: 3.0 Consensus size: 52
8267884 AGGGAAAGAA
* *
8267894 GCCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGACTTTTCAAAAA-AAAAAGG
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTAT-AAAAATAAAAAGG
* * **
8267946 GTCCAAAGTGTAAACCCGCAAAGGGCGCTTTGAGACCATATAAAAATGGAAAGG
1 G-CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGA-CTTATAAAAATAAAAAGG
* * * * *
8268000 GCCGAAGTAAAAACCCGCAAAGGGCACTTTGAGACTCAATAATAATAAAAA
1 GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACT-TATAAAAATAAAAA
8268051 AGGAAAAAGA
Statistics
Matches: 86, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 75 0.87
54 9 0.10
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (52 bp):
GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTATAAAAATAAAAAGG
Found at i:8269306 original size:43 final size:45
Alignment explanation
Indices: 8269244--8269329 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 45
8269234 CCTCATCTCT
**
8269244 CTGAGGTAACAAGAGAGCAGGTTGAAGAATG-AG-TCTTATCTTC
1 CTGAGGTAACAAGAGAGCAGACTGAAGAATGAAGATCTTATCTTC
* *
8269287 CTGAGGTAGCAAG-GAAGCAGACTGAAGAGTGAAGATCTTATCT
1 CTGAGGTAACAAGAG-AGCAGACTGAAGAATGAAGATCTTATCT
8269330 CCCAAAGCAG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 25 0.69
44 2 0.06
45 8 0.22
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (45 bp):
CTGAGGTAACAAGAGAGCAGACTGAAGAATGAAGATCTTATCTTC
Found at i:8269490 original size:163 final size:163
Alignment explanation
Indices: 8269242--8269543 Score: 421
Period size: 163 Copynumber: 1.9 Consensus size: 163
8269232 AACCTCATCT
* * * *
8269242 CTCTGAGGTAACAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAG
1 CTCTGAGGTAACAAGAGAACAGGTTAAAGAATGAGTCTTATCTTCCTGAGGAAGCAAGAAAGCAG
* *
8269307 ACTGAAGAGTGAAGATCTTATCTCCCAAAGCAGTAGCGGAGCAGATC-GAAAAAGGCGAATCTTA
66 ACTGAAGAGTGAAGATCTTATCTCCCAAAGCAGTAGCGGAGCAGATCAG-AAAAGACAAATCTTA
*
8269371 TCTTCATGTATCGATTTTATCACTAGCCTTATCC
130 TCTCCATGTATCGATTTTATCACTAGCCTTATCC
* **
8269405 CTCTGGGGTAACAAGAGAACAGGTTAAAG-ATGGAGTCTTATCATT-CTGAGGAAGCAAGAAATT
1 CTCTGAGGTAACAAGAGAACAGGTTAAAGAAT-GAGTCTTATC-TTCCTGAGGAAGCAAGAAAGC
* * * * *
8269468 AGACTGAAGATTGAAGATCTTATTTTCCTAAGCAGTAGCGGAGCAGATCAGAAATGACAAATCTT
64 AGACTGAAGAGTGAAGATCTTATCTCCCAAAGCAGTAGCGGAGCAGATCAGAAAAGACAAATCTT
8269533 ATCTCCATGTA
129 ATCTCCATGTA
8269544 CCCGCAATGG
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
162 2 0.02
163 116 0.96
164 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (163 bp):
CTCTGAGGTAACAAGAGAACAGGTTAAAGAATGAGTCTTATCTTCCTGAGGAAGCAAGAAAGCAG
ACTGAAGAGTGAAGATCTTATCTCCCAAAGCAGTAGCGGAGCAGATCAGAAAAGACAAATCTTAT
CTCCATGTATCGATTTTATCACTAGCCTTATCC
Found at i:8269916 original size:13 final size:13
Alignment explanation
Indices: 8269869--8269929 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
8269859 GGCCCATTAG
8269869 AATAAAAAA-ATAGA
1 AATAAAAAACA-A-A
* *
8269883 AATTAAAAACCAA
1 AATAAAAAACAAA
*
8269896 AA-ACAAAACAAA
1 AATAAAAAACAAA
*
8269908 AATAAAAAACACA
1 AATAAAAAACAAA
8269921 AATAAAAAA
1 AATAAAAAA
8269930 TCCAAATTCC
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 9 0.24
13 20 0.53
14 9 0.24
ACGTcount: A:0.79, C:0.10, G:0.02, T:0.10
Consensus pattern (13 bp):
AATAAAAAACAAA
Found at i:8269936 original size:13 final size:13
Alignment explanation
Indices: 8269882--8269929 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
8269872 AAAAAAATAG
*
8269882 AAATTAAAAAC-C
1 AAATAAAAAACAC
*
8269894 AAA-AACAAAACAA
1 AAATAA-AAAACAC
8269907 AAATAAAAAACAC
1 AAATAAAAAACAC
8269920 AAATAAAAAA
1 AAATAAAAAA
8269930 TCCAAATTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 1 0.03
12 8 0.27
13 19 0.63
14 2 0.07
ACGTcount: A:0.79, C:0.12, G:0.00, T:0.08
Consensus pattern (13 bp):
AAATAAAAAACAC
Found at i:8276792 original size:32 final size:32
Alignment explanation
Indices: 8276756--8276852 Score: 87
Period size: 32 Copynumber: 3.2 Consensus size: 32
8276746 CAGATTGTTT
8276756 ATATAAAGATAAAACCTGCAAACATGCTATGC
1 ATATAAAGATAAAACCTGCAAACATGCTATGC
*** * * **
8276788 ATATAGACTCTAAGA-CTG-AAA-AT--AATTT
1 ATATA-AAGATAAAACCTGCAAACATGCTATGC
8276816 ATATAAAGATAAAACCTGCAAACATGCTATGC
1 ATATAAAGATAAAACCTGCAAACATGCTATGC
8276848 ATATA
1 ATATA
8276853 GACTCTAAGA
Statistics
Matches: 45, Mismatches: 14, Indels: 12
0.63 0.20 0.17
Matches are distributed among these distances:
27 5 0.11
28 10 0.22
29 3 0.07
30 4 0.09
31 3 0.07
32 15 0.33
33 5 0.11
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.26
Consensus pattern (32 bp):
ATATAAAGATAAAACCTGCAAACATGCTATGC
Found at i:8276846 original size:60 final size:60
Alignment explanation
Indices: 8276753--8276873 Score: 233
Period size: 60 Copynumber: 2.0 Consensus size: 60
8276743 AAACAGATTG
*
8276753 TTTATATAAAGATAAAACCTGCAAACATGCTATGCATATAGACTCTAAGACTGAAAATAA
1 TTTATATAAAGATAAAACCTGCAAACATGCTATGCATATAGACTCTAAGAATGAAAATAA
8276813 TTTATATAAAGATAAAACCTGCAAACATGCTATGCATATAGACTCTAAGAATGAAAATAA
1 TTTATATAAAGATAAAACCTGCAAACATGCTATGCATATAGACTCTAAGAATGAAAATAA
8276873 T
1 T
8276874 ATTTCGGCCC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (60 bp):
TTTATATAAAGATAAAACCTGCAAACATGCTATGCATATAGACTCTAAGAATGAAAATAA
Found at i:8283353 original size:21 final size:21
Alignment explanation
Indices: 8283314--8283353 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8283304 TCGGTTTGTG
**
8283314 TAACACCCCTAACTTGTATTA
1 TAACACCCCTAACCCGTATTA
8283335 TAACACCCCTAACCCGTAT
1 TAACACCCCTAACCCGTAT
8283354 CTGTCGTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.35, G:0.05, T:0.28
Consensus pattern (21 bp):
TAACACCCCTAACCCGTATTA
Found at i:8290672 original size:18 final size:19
Alignment explanation
Indices: 8290623--8290665 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
8290613 TAAATGGATA
*
8290623 ATTATCTAATT-AAT-TTT
1 ATTATTTAATTAAATATTT
8290640 ATTATTTAATTAAATATTT
1 ATTATTTAATTAAATATTT
8290659 ATT-TTTA
1 ATTATTTA
8290666 GATAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 10 0.43
18 7 0.30
19 6 0.26
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTATTTAATTAAATATTT
Found at i:8293888 original size:31 final size:31
Alignment explanation
Indices: 8293845--8293908 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
8293835 CCTTTTCATA
*
8293845 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
* **
8293876 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
8293907 TT
1 TT
8293909 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTAGGCCGAAGCCT
Found at i:8294155 original size:24 final size:24
Alignment explanation
Indices: 8294102--8294269 Score: 189
Period size: 25 Copynumber: 7.0 Consensus size: 24
8294092 GCTTTATCAT
*
8294102 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * * *
8294127 GTAACCGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
8294151 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* *
8294176 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTA
8294201 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
8294224 ATAACTGGGGTATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
8294247 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
8294270 GCACTTCCTC
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
23 40 0.32
24 31 0.25
25 53 0.43
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:8294231 original size:23 final size:23
Alignment explanation
Indices: 8294123--8294268 Score: 184
Period size: 23 Copynumber: 6.1 Consensus size: 23
8294113 CCTAGCCTCT
* * *
8294123 TTTAGTAACCGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
8294146 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
8294170 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
8294195 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
*
8294220 TTTAATAACTGGGGTATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
8294243 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
8294266 TTT
1 TTT
8294269 TGCACTTCCT
Statistics
Matches: 108, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
23 46 0.43
24 19 0.18
25 42 0.39
27 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:8294341 original size:9 final size:9
Alignment explanation
Indices: 8294327--8294383 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
8294317 ATCTCATGTG
8294327 CATATCATA
1 CATATCATA
*
8294336 CATATCATGTG
1 CATATCA--TA
8294347 CATATCATA
1 CATATCATA
* *
8294356 CATGTCATGTG
1 CATATCA--TA
8294367 CATATCATA
1 CATATCATA
8294376 CATATCAT
1 CATATCAT
8294384 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:8294343 original size:20 final size:20
Alignment explanation
Indices: 8294315--8294385 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
8294305 GCATTTATGA
*
8294315 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
8294335 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
8294355 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
8294375 ACATATCATGT
1 ACATATCATGT
8294386 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:8294350 original size:11 final size:11
Alignment explanation
Indices: 8294320--8294374 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
8294310 TATGAACATC
8294320 TCATGTGCATA
1 TCATGTGCATA
*
8294331 TCA--TACATA
1 TCATGTGCATA
8294340 TCATGTGCATA
1 TCATGTGCATA
* *
8294351 TCA--TACATG
1 TCATGTGCATA
8294360 TCATGTGCATA
1 TCATGTGCATA
8294371 TCAT
1 TCAT
8294375 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:8295647 original size:27 final size:28
Alignment explanation
Indices: 8295616--8295711 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 28
8295606 TACGGAACAT
* *
8295616 AAGGGCATATT-C-GTCATTTTACCATAC
1 AAGGGC-TATTACAGTCACTTTACCCTAC
*
8295643 AAGGG-TATTACGGTCACTTTACCCTAC
1 AAGGGCTATTACAGTCACTTTACCCTAC
*
8295670 AGGGGCT-TTACAGTCACTTTACCCTAC
1 AAGGGCTATTACAGTCACTTTACCCTAC
8295697 AAGGGCT-TTACAGTC
1 AAGGGCTATTACAGTC
8295712 TTTTTACCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
25 4 0.07
26 1 0.02
27 55 0.90
28 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (28 bp):
AAGGGCTATTACAGTCACTTTACCCTAC
Found at i:8295719 original size:27 final size:27
Alignment explanation
Indices: 8295628--8295711 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
8295618 GGGCATATTC
* * *
8295628 GTCATTTTACCATACAAGGG-TATTACG
1 GTCACTTTACCCTACAAGGGCT-TTACA
*
8295655 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCACTTTACCCTACAAGGGCTTTACA
8295682 GTCACTTTACCCTACAAGGGCTTTACA
1 GTCACTTTACCCTACAAGGGCTTTACA
8295709 GTC
1 GTC
8295712 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAAGGGCTTTACA
Found at i:8295830 original size:27 final size:27
Alignment explanation
Indices: 8295753--8295985 Score: 204
Period size: 27 Copynumber: 8.7 Consensus size: 27
8295743 CATCCTACAA
* * * * *
8295753 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* * **
8295780 GGGTATTTTTGTAACTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
* *
8295807 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* * *
8295834 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
* *
8295861 TGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAATCAG
*
8295888 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTACAAATCAG
* *
8295914 AGGGTATTTCT-GTAATTTTACAAACCAA
1 -GGGTATTT-TGGTAATTTTACAAATCAG
* * *
8295942 GGGTATTTTAGTAATTTTATAGA-CTA-
1 GGGTATTTTGGTAATTTTACAAATC-AG
*
8295968 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
8295986 GTAAATCGAG
Statistics
Matches: 170, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
26 21 0.12
27 148 0.87
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:8295836 original size:81 final size:81
Alignment explanation
Indices: 8295751--8295985 Score: 282
Period size: 81 Copynumber: 2.9 Consensus size: 81
8295741 TTCATCCTAC
* * * * *
8295751 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTTGTAACTTTGTAAATCAGGGGTATTTT
1 AAGGGTATTTTGGTAAATTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCAGGGGTATTTT
8295816 GGTAATTTTACAAATT
66 GGTAATTTTACAAATT
* * * *
8295832 AAGGGTATTTCGGT-AATTTCACAAACC-AGTGGTATTTTGGTAATTTTACAAATTAGGGGTATT
1 AAGGGTATTTTGGTAAATTT-ACAAACCAAG-GGTATTTTAGTAATTTTATAAATCAGGGGTATT
8295895 TTGGTAATTTTACAAATT
64 TTGGTAATTTTACAAATT
* * *
8295913 GAGGGTATTTCT-GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAGA-CTA-GGGTATT
1 AAGGGTATTT-TGGTAAATTTACAAACCAAGGGTATTTTAGTAATTTTATAAATC-AGGGGTATT
*
8295975 TTAGTAATTTT
64 TTGGTAATTTT
8295986 GTAAATCGAG
Statistics
Matches: 132, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
80 23 0.17
81 103 0.78
82 6 0.05
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTTGGTAAATTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCAGGGGTATTTT
GGTAATTTTACAAATT
Found at i:8295959 original size:54 final size:53
Alignment explanation
Indices: 8295752--8295985 Score: 229
Period size: 54 Copynumber: 4.4 Consensus size: 53
8295742 TCATCCTACA
* * * * * **
8295752 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTTGTAACTTTGTAAATC
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
** * * *
8295805 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
** * *
8295859 AGTGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAA-TC
* * *
8295914 AGGGTATTTCT-GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAGA-C
1 AGGGTATTT-TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
*
8295966 TAGGGTATTTTAGTAATTTT
1 -AGGGTATTTTGGTAATTTT
8295986 GTAAATCGAG
Statistics
Matches: 151, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 19 0.13
54 128 0.85
55 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
Found at i:8296007 original size:27 final size:27
Alignment explanation
Indices: 8295977--8296107 Score: 154
Period size: 27 Copynumber: 4.9 Consensus size: 27
8295967 AGGGTATTTT
*
8295977 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
8296004 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
8296031 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
8296058 GGTACTTTTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
8296085 TGTAATTATGAAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
8296108 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:8296023 original size:80 final size:81
Alignment explanation
Indices: 8295763--8296026 Score: 223
Period size: 81 Copynumber: 3.3 Consensus size: 81
8295753 GGGTGTTTTG
* * * *
8295763 GTAAATCTACAAACCAAGGGTATTTTTGTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTA
1 GTAATTCTACAAACCAAGGGTATTTTAGTAA-TTT-TACAAACTAGGGGTATTTTAGTAATTTTA
** *** *
8295826 CAAATTAAGGGTATTTCG
64 CAAATCGAGGGTAAAACA
* * *
8295844 GTAATT-TCACAAACC-AGTGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA
1 GTAATTCT-ACAAACCAAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTA
* *** *
8295907 CAAATTGAGGGTATTTCT
64 CAAATCGAGGGTAAAACA
* * * **
8295925 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAGACTA-GGGTATTTTAGTAATTTTGTA
1 GTAATTCTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACA
8295989 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAACA
** *
8296005 GTAATTCTGTAAATCAAGGGTA
1 GTAATTCTACAAACCAAGGGTA
8296027 AAACAGTAAT
Statistics
Matches: 155, Mismatches: 22, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
79 2 0.01
80 55 0.35
81 95 0.61
82 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACA
AATCGAGGGTAAAACA
Found at i:8300619 original size:23 final size:23
Alignment explanation
Indices: 8300589--8300646 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
8300579 ATATCTTTAT
*
8300589 TTTCACTTGATTGTTCTGCTATG
1 TTTCACTTGATTGTTCTACTATG
*
8300612 TTTCACTTGATTGTTCTACTGTG
1 TTTCACTTGATTGTTCTACTATG
*
8300635 TTCCACTTGATT
1 TTTCACTTGATT
8300647 TCTAAAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.14, C:0.19, G:0.16, T:0.52
Consensus pattern (23 bp):
TTTCACTTGATTGTTCTACTATG
Found at i:8300869 original size:84 final size:84
Alignment explanation
Indices: 8300766--8300933 Score: 318
Period size: 84 Copynumber: 2.0 Consensus size: 84
8300756 TATGGTGTAG
8300766 AAATCACATGTTTAAAATATAGCTGTGTATTTTAAAATAATATACAATAAATGATGAAGAGTATG
1 AAATCACATGTTTAAAATATAGCTGTGTATTTTAAAATAATATACAATAAATGATGAAGAGTATG
8300831 ATTTAAAAAAAAATAATAA
66 ATTTAAAAAAAAATAATAA
8300850 AAATCACATGTTTAAAATATAGCTGTGTATTTTAAAATAATATACAATAAATGATGAAGAGTATG
1 AAATCACATGTTTAAAATATAGCTGTGTATTTTAAAATAATATACAATAAATGATGAAGAGTATG
* *
8300915 ATTTAAAAATAATTAATAA
66 ATTTAAAAAAAAATAATAA
8300934 TAACACACAA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.33
Consensus pattern (84 bp):
AAATCACATGTTTAAAATATAGCTGTGTATTTTAAAATAATATACAATAAATGATGAAGAGTATG
ATTTAAAAAAAAATAATAA
Found at i:8311771 original size:22 final size:23
Alignment explanation
Indices: 8311746--8311794 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
8311736 AAAAACATAA
8311746 ACAGAAT-ATATCAG-GTACAGAT
1 ACAGAATCATATCAGAG-ACAGAT
8311768 ACAG-ATCATATCAGAGACAGAT
1 ACAGAATCATATCAGAGACAGAT
*
8311790 GCAGA
1 ACAGA
8311795 TTCCCTACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 2 0.09
22 20 0.87
23 1 0.04
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (23 bp):
ACAGAATCATATCAGAGACAGAT
Found at i:8311795 original size:22 final size:22
Alignment explanation
Indices: 8311753--8311795 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8311743 TAAACAGAAT
8311753 ATATCAGGTACAGATACAGATC
1 ATATCAGGTACAGATACAGATC
*
8311775 ATATCAGAG-ACAGATGCAGAT
1 ATATCAG-GTACAGATACAGAT
8311796 TCCCTACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (22 bp):
ATATCAGGTACAGATACAGATC
Found at i:8311984 original size:2 final size:2
Alignment explanation
Indices: 8311979--8312012 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8311969 TATATATATA
8311979 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8312013 GCTTAGCCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:8313222 original size:24 final size:27
Alignment explanation
Indices: 8313175--8313226 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 27
8313165 ATGGGGAGCC
8313175 AAAATAAAAGAAGAAGAGAAGAGAAAA
1 AAAATAAAAGAAGAAGAGAAGAGAAAA
*
8313202 AAAAT-AAAG-AGAA-AGAGGAGAAAA
1 AAAATAAAAGAAGAAGAGAAGAGAAAA
8313226 A
1 A
8313227 GAGGGAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 11 0.46
25 4 0.17
26 4 0.17
27 5 0.21
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (27 bp):
AAAATAAAAGAAGAAGAGAAGAGAAAA
Found at i:8314116 original size:13 final size:13
Alignment explanation
Indices: 8314098--8314130 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8314088 TCTACACTGT
8314098 CATGTGAACAGGC
1 CATGTGAACAGGC
8314111 CATGTG-ACAGGC
1 CATGTGAACAGGC
*
8314123 CGTGTGAA
1 CATGTGAA
8314131 GCATAGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.27, C:0.21, G:0.33, T:0.18
Consensus pattern (13 bp):
CATGTGAACAGGC
Found at i:8315121 original size:41 final size:41
Alignment explanation
Indices: 8314963--8315124 Score: 103
Period size: 41 Copynumber: 4.0 Consensus size: 41
8314953 TTAATATAGA
* * * * * *
8314963 CACGAAGCCTACAAGGCTGAAGGCTTGATTCGATACACCGA
1 CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACCGG
* * * * * * *
8315004 CATGAAGCCAACTAGGTTTAAGGAC-CAACACGATACACCGG
1 CACGAAGCCTACTAGGCTCAAGG-CTCGATACAATACACCGG
* * ** * * * *
8315045 TACAAAGATTTCTAGCCTCTAGGCAT-GATAGAATACACCGG
1 CACGAAGCCTACTAGGCTCAAGGC-TCGATACAATACACCGG
8315086 CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACC
1 CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACC
8315125 TAACACATTT
Statistics
Matches: 84, Mismatches: 33, Indels: 8
0.67 0.26 0.06
Matches are distributed among these distances:
40 2 0.02
41 81 0.96
42 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (41 bp):
CACGAAGCCTACTAGGCTCAAGGCTCGATACAATACACCGG
Found at i:8317450 original size:14 final size:16
Alignment explanation
Indices: 8317431--8317464 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
8317421 CTCCCGGCTT
8317431 ATAATGG-AACTCT-G
1 ATAATGGTAACTCTAG
8317445 ATAATGGTAACTCTAG
1 ATAATGGTAACTCTAG
8317461 ATAA
1 ATAA
8317465 ATATATAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 6 0.33
16 5 0.28
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (16 bp):
ATAATGGTAACTCTAG
Found at i:8318041 original size:14 final size:13
Alignment explanation
Indices: 8318001--8318042 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
8317991 TCATTTACTA
8318001 ATATTTAACATTT
1 ATATTTAACATTT
*
8318014 -TATTTAAACCTTT
1 ATATTT-AACATTT
8318027 ATATTATAACATTT
1 ATATT-TAACATTT
8318041 AT
1 AT
8318043 TCAGGTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 5 0.21
13 6 0.25
14 12 0.50
15 1 0.04
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATTTAACATTT
Found at i:8318616 original size:17 final size:17
Alignment explanation
Indices: 8318572--8318616 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
8318562 TTTCTTTTCC
8318572 TTTCTTTCCTTTTCTTT
1 TTTCTTTCCTTTTCTTT
* * *
8318589 CTTCCTACCTTTTCTTT
1 TTTCTTTCCTTTTCTTT
8318606 TTTCTTTCCTT
1 TTTCTTTCCTT
8318617 CCTTCCCCCT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTCTTTCCTTTTCTTT
Found at i:8322691 original size:46 final size:46
Alignment explanation
Indices: 8322616--8322707 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
8322606 AATTGTGCAA
* * *
8322616 ACAAAAACTCAAAGAACATCAATGCTTGTTTGCACAGTTCAGTTTC
1 ACAAAAACTCAAAAAACATCAATGCTTGTTTACACAGTTCAATTTC
* * * *
8322662 ACAAAAACTTAAAAAACTTTAATGTTTGTTTACACAGTTCAATTTC
1 ACAAAAACTCAAAAAACATCAATGCTTGTTTACACAGTTCAATTTC
8322708 TCTTTGTTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (46 bp):
ACAAAAACTCAAAAAACATCAATGCTTGTTTACACAGTTCAATTTC
Found at i:8330623 original size:10 final size:10
Alignment explanation
Indices: 8330608--8330639 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
8330598 TAAATACATT
8330608 TAATTAAAGA
1 TAATTAAAGA
8330618 TAATTAAAGA
1 TAATTAAAGA
8330628 TAATTAAA-A
1 TAATTAAAGA
8330637 TAA
1 TAA
8330640 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:8330737 original size:5 final size:5
Alignment explanation
Indices: 8330689--8330718 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
8330679 TAATTATCCT
8330689 AATATA AATAA AATAA AATAA AATAA AATA
1 AATA-A AATAA AATAA AATAA AATAA AATA
8330719 GAGTCTTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:8343803 original size:17 final size:17
Alignment explanation
Indices: 8343781--8343815 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8343771 TTCAACATAG
8343781 TGAATTTTCTTCTCCTC
1 TGAATTTTCTTCTCCTC
8343798 TGAATTTTCTTCTCCTC
1 TGAATTTTCTTCTCCTC
8343815 T
1 T
8343816 TTCCCNNNNN
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.06, T:0.54
Consensus pattern (17 bp):
TGAATTTTCTTCTCCTC
Found at i:8344309 original size:10 final size:9
Alignment explanation
Indices: 8344273--8344312 Score: 53
Period size: 10 Copynumber: 4.1 Consensus size: 9
8344263 GTTAATGATT
8344273 AATTAATTAA
1 AATTAATT-A
8344283 AACTTAATTA
1 AA-TTAATTA
8344293 AATTAATTA
1 AATTAATTA
8344302 AGATTAATTA
1 A-ATTAATTA
8344312 A
1 A
8344313 CTTATAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 14 0.50
11 6 0.21
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (9 bp):
AATTAATTA
Found at i:8349539 original size:34 final size:33
Alignment explanation
Indices: 8349496--8349560 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
8349486 AATCGATGCA
*
8349496 TTCTTTCTGTATGTAGTC-TTTCCCTACAAGTNTC
1 TTCTTTCTGTATGTA-CCGTTTCCCTACAAGT-TC
*
8349530 TTCTTTCTGTGTGTACCGTTTCCCTACAAGT
1 TTCTTTCTGTATGTACCGTTTCCCTACAAGT
8349561 CTAGCTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 1 0.04
34 27 0.96
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.46
Consensus pattern (33 bp):
TTCTTTCTGTATGTACCGTTTCCCTACAAGTTC
Found at i:8351466 original size:18 final size:18
Alignment explanation
Indices: 8351439--8351473 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8351429 ACTTAGTCGG
*
8351439 TTTCTTCTTTCCTTTAGC
1 TTTCTGCTTTCCTTTAGC
*
8351457 TTTCTGCTTTCTTTTAG
1 TTTCTGCTTTCCTTTAG
8351474 AGGATAAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.23, G:0.09, T:0.63
Consensus pattern (18 bp):
TTTCTGCTTTCCTTTAGC
Found at i:8368133 original size:5 final size:5
Alignment explanation
Indices: 8368123--8368151 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8368113 CCAATTTGGA
8368123 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
8368152 ACACAGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:8368908 original size:24 final size:25
Alignment explanation
Indices: 8368870--8368921 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
8368860 ACACATTAGC
8368870 AAACAAAAATATATAAATAT-AAAT
1 AAACAAAAATATATAAATATAAAAT
* * *
8368894 AAACAAATATTTATATATATAAAAT
1 AAACAAAAATATATAAATATAAAAT
8368919 AAA
1 AAA
8368922 TTGAATTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
AAACAAAAATATATAAATATAAAAT
Found at i:8370316 original size:10 final size:10
Alignment explanation
Indices: 8370303--8370346 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
8370293 AGAAATATTT
8370303 AAAATTCATA
1 AAAATTCATA
8370313 AAAATT-ATA
1 AAAATTCATA
*
8370322 AAAATTTAATA
1 AAAA-TTCATA
*
8370333 AAAATTCACA
1 AAAATTCATA
8370343 AAAA
1 AAAA
8370347 ATAGCTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 7 0.23
10 16 0.53
11 7 0.23
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAATTCATA
Found at i:8370317 original size:19 final size:20
Alignment explanation
Indices: 8370275--8370317 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
8370265 TCATGTCAAC
*
8370275 AAATAATTTAAAATATATAG
1 AAATAATTTAAAATATATAA
8370295 AAAT-ATTTAAAAT-TCATAA
1 AAATAATTTAAAATAT-ATAA
8370314 AAAT
1 AAAT
8370318 TATAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 16 0.76
20 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
AAATAATTTAAAATATATAA
Found at i:8372639 original size:42 final size:42
Alignment explanation
Indices: 8372593--8372676 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
8372583 CAAATTGACG
8372593 GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAAAACTACCC
1 GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAAAACTACCC
*
8372635 GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAGAACTACCC
1 GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAAAACTACCC
8372677 AATTCCGACT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.49, C:0.19, G:0.13, T:0.19
Consensus pattern (42 bp):
GAGTTAACTAAACTGAGCTAAAACTAAAAGTAAAAACTACCC
Found at i:8373651 original size:23 final size:22
Alignment explanation
Indices: 8373632--8373691 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
8373622 TATATGTTGA
8373632 TGAACATATTCGTTTAATGTTTG
1 TGAAC-TATTCGTTTAATGTTTG
8373655 TGAAC---TCGTTTAATGTTTG
1 TGAACTATTCGTTTAATGTTTG
*
8373674 TGAACGTATTCATTTAAT
1 TGAAC-TATTCGTTTAAT
8373692 TTAAATGAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
19 19 0.59
23 13 0.41
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.47
Consensus pattern (22 bp):
TGAACTATTCGTTTAATGTTTG
Found at i:8373665 original size:19 final size:19
Alignment explanation
Indices: 8373641--8373678 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8373631 ATGAACATAT
8373641 TCGTTTAATGTTTGTGAAC
1 TCGTTTAATGTTTGTGAAC
8373660 TCGTTTAATGTTTGTGAAC
1 TCGTTTAATGTTTGTGAAC
8373679 GTATTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (19 bp):
TCGTTTAATGTTTGTGAAC
Found at i:8377610 original size:20 final size:20
Alignment explanation
Indices: 8377585--8377631 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8377575 ACATATATAA
*
8377585 ATACATATATACA-GACATGC
1 ATACATAAATACATG-CATGC
8377605 ATACATAAATACATGCATGC
1 ATACATAAATACATGCATGC
*
8377625 ATGCATA
1 ATACATA
8377632 CAAAGAACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.26
Consensus pattern (20 bp):
ATACATAAATACATGCATGC
Found at i:8383578 original size:22 final size:22
Alignment explanation
Indices: 8383553--8383594 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8383543 AAACAAAAAC
*
8383553 TGTTAAAAAAACTGATGTGACT
1 TGTTAAAAAAACTAATGTGACT
8383575 TGTTAAAAAAACTAATGTGA
1 TGTTAAAAAAACTAATGTGA
8383595 GAGAAACTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.31
Consensus pattern (22 bp):
TGTTAAAAAAACTAATGTGACT
Found at i:8383679 original size:27 final size:27
Alignment explanation
Indices: 8383639--8383706 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
8383629 TGGAGGGCAC
* *
8383639 GCCAGAGGCTGCACTG-GTGAAGCCTGT
1 GCCAGAGGCGGCAC-GAGTGAAGCCTAT
* *
8383666 GGCAGAGGCGGCACGAGTGAAGCTTAT
1 GCCAGAGGCGGCACGAGTGAAGCCTAT
*
8383693 GCCATAGGCGGCAC
1 GCCAGAGGCGGCAC
8383707 CCACTCCCCC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.22, C:0.25, G:0.38, T:0.15
Consensus pattern (27 bp):
GCCAGAGGCGGCACGAGTGAAGCCTAT
Found at i:8384225 original size:17 final size:17
Alignment explanation
Indices: 8384205--8384253 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
8384195 ATTGAGAAAA
8384205 TTTTTTAGTATTTTATT
1 TTTTTTAGTATTTTATT
*
8384222 TTTTTTGGTATTTTATT
1 TTTTTTAGTATTTTATT
* *
8384239 TTTTATAATATTTTA
1 TTTTTTAGTATTTTA
8384254 ATAAAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.73
Consensus pattern (17 bp):
TTTTTTAGTATTTTATT
Found at i:8384405 original size:27 final size:27
Alignment explanation
Indices: 8384375--8384443 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
8384365 TGGGAGAGTG
* * * *
8384375 GGTGCCGCCTATGGCATAGGTTTCACT
1 GGTGCCGCCTCTGGCACAGGCTTCACC
* *
8384402 GGTGCTGCCTCTGCCACAGGCTTCACC
1 GGTGCCGCCTCTGGCACAGGCTTCACC
*
8384429 AGTGCCGCCTCTGGC
1 GGTGCCGCCTCTGGC
8384444 GTGCCCTCCA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.12, C:0.35, G:0.29, T:0.25
Consensus pattern (27 bp):
GGTGCCGCCTCTGGCACAGGCTTCACC
Found at i:8384509 original size:26 final size:27
Alignment explanation
Indices: 8384457--8384509 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
8384447 CCCTCCATCC
*
8384457 CTGTCACATCAATTTTTTTAACTGTTT
1 CTGTCACATCAATTTTTTTAACAGTTT
8384484 CTGTCACATCAA-TTTTTTAACAGTTT
1 CTGTCACATCAATTTTTTTAACAGTTT
8384510 TTTTTAACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.49
Consensus pattern (27 bp):
CTGTCACATCAATTTTTTTAACAGTTT
Found at i:8384514 original size:13 final size:14
Alignment explanation
Indices: 8384496--8384530 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8384486 GTCACATCAA
*
8384496 TTTTTTAAC-AGTT
1 TTTTTTAACTAATT
8384509 TTTTTTAACTAATT
1 TTTTTTAACTAATT
8384523 TTTTTTAA
1 TTTTTTAA
8384531 ACAGAGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.66
Consensus pattern (14 bp):
TTTTTTAACTAATT
Done.