Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 303 of 310
Found at i:100038703 original size:37 final size:38
Alignment explanation
Indices: 100038652--100038726 Score: 125
Period size: 37 Copynumber: 2.0 Consensus size: 38
100038642 CAAGTAAGGA
100038652 ATAAATTTATATTTAGTCATTTTATATTCATTATCCTC
1 ATAAATTTATATTTAGTCATTTTATATTCATTATCCTC
**
100038690 ATAAA-TTATATTTAGTCATTTTATATTTGTTATCCTC
1 ATAAATTTATATTTAGTCATTTTATATTCATTATCCTC
100038727 GTATGATAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 30 0.86
38 5 0.14
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.53
Consensus pattern (38 bp):
ATAAATTTATATTTAGTCATTTTATATTCATTATCCTC
Found at i:100040790 original size:27 final size:27
Alignment explanation
Indices: 100040752--100040829 Score: 147
Period size: 27 Copynumber: 2.9 Consensus size: 27
100040742 TTTACTTTCT
100040752 GGTTATTCGAGGTTACTAAGCATGTCC
1 GGTTATTCGAGGTTACTAAGCATGTCC
*
100040779 GGTTATTCGAGGTTACTAAGCATGTCT
1 GGTTATTCGAGGTTACTAAGCATGTCC
100040806 GGTTATTCGAGGTTACTAAGCATG
1 GGTTATTCGAGGTTACTAAGCATG
100040830 AAAATGCTTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (27 bp):
GGTTATTCGAGGTTACTAAGCATGTCC
Found at i:100046712 original size:57 final size:57
Alignment explanation
Indices: 100046646--100046756 Score: 213
Period size: 57 Copynumber: 1.9 Consensus size: 57
100046636 CCCTTATAAG
100046646 GACTATTTTGCAAAAGATGTAAATGTGTGGTAGAAATGAGAAAAATATGGAAAATGT
1 GACTATTTTGCAAAAGATGTAAATGTGTGGTAGAAATGAGAAAAATATGGAAAATGT
*
100046703 GACTATTTTGCAAAAGATGTAAATGTGTGGTAGCAATGAGAAAAATATGGAAAA
1 GACTATTTTGCAAAAGATGTAAATGTGTGGTAGAAATGAGAAAAATATGGAAAA
100046757 CATGGGCTAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.44, C:0.05, G:0.24, T:0.27
Consensus pattern (57 bp):
GACTATTTTGCAAAAGATGTAAATGTGTGGTAGAAATGAGAAAAATATGGAAAATGT
Found at i:100051060 original size:46 final size:46
Alignment explanation
Indices: 100050917--100051231 Score: 230
Period size: 46 Copynumber: 6.7 Consensus size: 46
100050907 TTATTTGTGT
* * **
100050917 GCCAGTGTAAAACATGTCTGGGACATGCATTGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGA
* * **
100050963 GCCAGTGTAAGACTATGTCTGGGATATGGTATCGG-CATTGAGATGAGA
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCA-CAAGATGAGA
* * *
100051011 GCCAGTGTAAGACATGTCTGGGACATGTATCGACCTCAAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATG-AGA
* * *
100051057 GCCAGTGTAAGACATGTCTGGAATATGCATCGGCCACAAGAT--GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGA
** * * *
100051101 GTTAGTGTAAGACCATGTCTGGGACATGGCATC-GACAC-ATATAGAGGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAAGAT-GA-GA
* * * *
100051149 GTCAATGTAAGACTATGTTTGGGACATGGCATCGG-CACGAATATGTGAGA
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCAC-AAGA--TGAGA
*
100051199 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
100051232 TGCATTATAC
Statistics
Matches: 217, Mismatches: 33, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
44 13 0.06
45 16 0.07
46 66 0.30
47 29 0.13
48 57 0.26
49 1 0.00
50 31 0.14
51 3 0.01
52 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGA
Found at i:100051799 original size:18 final size:18
Alignment explanation
Indices: 100051776--100051814 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
100051766 TATATGCAAT
* *
100051776 TGATGATATTTTCATGGA
1 TGATGAAATTTTCATGAA
100051794 TGATGAAATTTTCATGAA
1 TGATGAAATTTTCATGAA
100051812 TGA
1 TGA
100051815 GTTAATGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (18 bp):
TGATGAAATTTTCATGAA
Found at i:100055765 original size:39 final size:40
Alignment explanation
Indices: 100055669--100055849 Score: 176
Period size: 40 Copynumber: 4.5 Consensus size: 40
100055659 ATGATGTCCG
* * * *
100055669 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCA
*
100055708 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCA
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* *
100055749 GGCTAAG-CCCGAAGGCA-TTGATGTGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAATCCA
* **
100055788 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CGG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCA
*
100055828 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
100055850 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.27
40 70 0.58
41 15 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
Found at i:100055871 original size:79 final size:79
Alignment explanation
Indices: 100055718--100055882 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
100055708 GGACTAAGAT
* **
100055718 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCATTGATGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGATACGAGTTACTAA
*
100055783 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
** *
100055797 CCGAAGGCATTTGTGCGAGTTACT-ATAACGGGGCTATGTCCCGAAGGCATTTGA-ACGAG-TAG
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCA-TTGATACGAGTTA-
* *
100055859 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
100055876 CCGAAGG
1 CCGAAGG
100055883 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 20 0.27
81 4 0.05
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGATACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:100061098 original size:45 final size:44
Alignment explanation
Indices: 100061047--100061308 Score: 181
Period size: 45 Copynumber: 5.6 Consensus size: 44
100061037 TTGTGTGTCG
*
100061047 GTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGAGCA
* * *
100061092 GTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGATGTA-AGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATG-AGAG-CA
* * * * * *
100061138 GTGTAAGACATGTCTAGAATATACATCGGCCACA-A-GATGTGTTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCACATATGA-GAG-CA
* *
100061182 GTGTAAGACCATGTCTGGGACATGGCATC-GACACATATAGAGGTGTCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATAT-GA-GAG-CA
* * *
100061230 ATGTAAGACTATGTTTGGGACATGGCATCGGCACGAATATATGAGAGCTA
1 GTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-C--ACATATGAGAGC-A
*
100061280 GTGTAAGACCATGTCTGGGATATGGCATC
1 GTGTAAGA-CATGTCTGGGACAT-GCATC
100061309 CGTATTATAC
Statistics
Matches: 172, Mismatches: 28, Indels: 29
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 11 0.06
45 52 0.30
46 36 0.21
47 1 0.01
48 32 0.19
49 2 0.01
50 28 0.16
51 3 0.02
52 5 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (44 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGAGCA
Found at i:100061166 original size:46 final size:46
Alignment explanation
Indices: 100061047--100061177 Score: 122
Period size: 46 Copynumber: 2.9 Consensus size: 46
100061037 TTGTGTGTCG
* * * * **
100061047 GTGTAAGACATGTCTGGGACATGCATTGGCCACATTATG-AGAG-CA
1 GTGTAAGACATGTCTAGAACATACATCGGCCACAAGATGTA-AGCCA
* * ** * *
100061092 GTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGATGTAAGCCA
1 GTGTAAGACATGTCTAGAACATACATCGGCCACAAGATGTAAGCCA
*
100061138 GTGTAAGACATGTCTAGAATATACATCGGCCACAAGATGT
1 GTGTAAGACATGTCTAGAACATACATCGGCCACAAGATGT
100061178 GTTAGTGTAA
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
45 35 0.49
46 36 0.51
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (46 bp):
GTGTAAGACATGTCTAGAACATACATCGGCCACAAGATGTAAGCCA
Found at i:100061299 original size:50 final size:47
Alignment explanation
Indices: 100061180--100061308 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 47
100061170 CAAGATGTGT
*
100061180 TAGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTC
* * * *
100061227 TCAATGTAAGACTATGTTTGGGACATGGCATCGGCACGAATATATGAGAG-C
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGACAC--ATATA-GAG-GTC
*
100061278 TAGTGTAAGACCATGTCTGGGATATGGCATC
1 TAGTGTAAGACCATGTCTGGGACATGGCATC
100061309 CGTATTATAC
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 31 0.46
50 31 0.46
51 4 0.06
52 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTC
Found at i:100061892 original size:18 final size:18
Alignment explanation
Indices: 100061854--100061892 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
100061844 TATATGCAAT
* *
100061854 TGATGATATTTTCATGGA
1 TGATGAAATTTTCATGAA
*
100061872 TGATGAAATTTTTATGAA
1 TGATGAAATTTTCATGAA
100061890 TGA
1 TGA
100061893 GTTAATGCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.44
Consensus pattern (18 bp):
TGATGAAATTTTCATGAA
Found at i:100067264 original size:6 final size:6
Alignment explanation
Indices: 100067253--100067286 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
100067243 AGGTTTCCAA
* *
100067253 AAATGG AAATGG AAATGG AAATAG AAATGA AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
100067287 AAGAATGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.18
Consensus pattern (6 bp):
AAATGG
Found at i:100068920 original size:29 final size:29
Alignment explanation
Indices: 100068886--100068945 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
100068876 AATCATACAA
100068886 AAAGATAAAAAATAGTGTAAAACTACTTT
1 AAAGATAAAAAATAGTGTAAAACTACTTT
100068915 AAAGATAAAAAATAGTGTAAAACTACTTT
1 AAAGATAAAAAATAGTGTAAAACTACTTT
100068944 AA
1 AA
100068946 TTTTACCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.27
Consensus pattern (29 bp):
AAAGATAAAAAATAGTGTAAAACTACTTT
Found at i:100082945 original size:10 final size:10
Alignment explanation
Indices: 100082927--100082974 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
100082917 CTATCGAAAG
*
100082927 TAATCAAAAT
1 TAATTAAAAT
100082937 TAATTAAAAT
1 TAATTAAAAT
*
100082947 TTATTATGAAAT
1 TAATTA--AAAT
100082959 TAATTAAAAT
1 TAATTAAAAT
*
100082969 TCATTA
1 TAATTA
100082975 TGTGAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 23 0.72
12 9 0.28
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (10 bp):
TAATTAAAAT
Found at i:100082985 original size:22 final size:22
Alignment explanation
Indices: 100082933--100082976 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
100082923 AAAGTAATCA
*
100082933 AAATTAATTAAAATTTATTATG
1 AAATTAATTAAAATTCATTATG
100082955 AAATTAATTAAAATTCATTATG
1 AAATTAATTAAAATTCATTATG
100082977 TGAATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (22 bp):
AAATTAATTAAAATTCATTATG
Found at i:100084844 original size:40 final size:40
Alignment explanation
Indices: 100084814--100085703 Score: 1674
Period size: 40 Copynumber: 22.3 Consensus size: 40
100084804 GGACTAAGAT
* * * **
100084814 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100084854 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100084894 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100084934 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100084974 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085014 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085054 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085094 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085134 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085174 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085214 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085254 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085294 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085334 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085374 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085414 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085454 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085494 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085534 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085574 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085614 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
100085654 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
100085693 CCGAAGGCATT
1 CCGAAGGCATT
100085704 TGAACGAGGA
Statistics
Matches: 839, Mismatches: 11, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
39 33 0.04
40 806 0.96
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:100089102 original size:38 final size:39
Alignment explanation
Indices: 100089049--100089125 Score: 129
Period size: 38 Copynumber: 2.0 Consensus size: 39
100089039 TTGGGCTACT
100089049 TAGAAAAATATTTTTTTTGAAAAATTACATTAAATTAAA
1 TAGAAAAATATTTTTTTTGAAAAATTACATTAAATTAAA
**
100089088 TAGAAAAATA-TTTTTTTGAAATGTTACATTAAATTAAA
1 TAGAAAAATATTTTTTTTGAAAAATTACATTAAATTAAA
100089126 CTCCTAAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 26 0.72
39 10 0.28
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (39 bp):
TAGAAAAATATTTTTTTTGAAAAATTACATTAAATTAAA
Found at i:100089461 original size:30 final size:30
Alignment explanation
Indices: 100089425--100089485 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
100089415 CATCTTATTA
100089425 GGGAAAGAAAACACGTAATGACCTTTCCTG
1 GGGAAAGAAAACACGTAATGACCTTTCCTG
*
100089455 GGGAAAGAAAACCCGTAATGACCTTTCCTG
1 GGGAAAGAAAACACGTAATGACCTTTCCTG
100089485 G
1 G
100089486 TGGCTCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (30 bp):
GGGAAAGAAAACACGTAATGACCTTTCCTG
Found at i:100097495 original size:28 final size:28
Alignment explanation
Indices: 100097462--100097557 Score: 138
Period size: 28 Copynumber: 3.4 Consensus size: 28
100097452 ATATTAAGTC
*
100097462 CGCACACTCAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
100097490 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
100097518 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
100097547 CGCACACTTAG
1 CGCACACTTAG
100097558 CGCCAATCTC
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 46 0.74
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:100103562 original size:27 final size:27
Alignment explanation
Indices: 100103521--100103574 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
100103511 TGTCATGTGA
* *
100103521 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
100103548 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
100103575 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:100103899 original size:51 final size:51
Alignment explanation
Indices: 100103823--100104018 Score: 277
Period size: 51 Copynumber: 3.9 Consensus size: 51
100103813 TATTGTGAGG
*
100103823 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * *
100103874 TCACGTATGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * * ** * *
100103925 TCATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
*
100103975 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
100104019 GCCTTATCTA
Statistics
Matches: 127, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
50 41 0.32
51 86 0.68
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:100104005 original size:101 final size:102
Alignment explanation
Indices: 100103827--100104018 Score: 287
Period size: 101 Copynumber: 1.9 Consensus size: 102
100103817 GTGAGGTCAC
* *
100103827 GTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTATGTAGTACTAA
1 GTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCACGTATGTAGTACTAA
*
100103892 GTGCAGGCTACTATGCGTACCTGATAACTTCAATCAT
66 GTGCAGGCTACTATGCGTACCAGATAACTTCAATCAT
* * ** * * *
100103929 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GGTTAGGTCACGTGTGTAGTACTAT
1 GTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCACGTATGTAGTACTAA
100103993 GTGCAGGCTACTATGCGTACCAGATA
66 GTGCAGGCTACTATGCGTACCAGATA
100104019 GCCTTATCTA
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
101 44 0.55
102 36 0.45
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (102 bp):
GTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCACGTATGTAGTACTAA
GTGCAGGCTACTATGCGTACCAGATAACTTCAATCAT
Found at i:100114772 original size:32 final size:32
Alignment explanation
Indices: 100114736--100114799 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
100114726 ACCTCCGAGA
100114736 TAGACAAATGGAAAACTTTCAAGCTATGAAAG
1 TAGACAAATGGAAAACTTTCAAGCTATGAAAG
100114768 TAGACAAATGGAAAACTTTCAAGCTATGAAAG
1 TAGACAAATGGAAAACTTTCAAGCTATGAAAG
100114800 ATGCTAACCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (32 bp):
TAGACAAATGGAAAACTTTCAAGCTATGAAAG
Found at i:100130243 original size:21 final size:21
Alignment explanation
Indices: 100130217--100130259 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
100130207 CAATATTTGC
100130217 ATGCAAATAACTTGTAATCTA
1 ATGCAAATAACTTGTAATCTA
100130238 ATGCAAATAACTTGTAATCTA
1 ATGCAAATAACTTGTAATCTA
100130259 A
1 A
100130260 CACTATTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (21 bp):
ATGCAAATAACTTGTAATCTA
Found at i:100134386 original size:9 final size:9
Alignment explanation
Indices: 100134362--100134416 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
100134352 AAAATGTCAT
100134362 ATTAATTCTA
1 ATTAATT-TA
*
100134372 ATTAATTTG
1 ATTAATTTA
100134381 ATTAATTTA
1 ATTAATTTA
*
100134390 A-T--TCTA
1 ATTAATTTA
*
100134396 ATTAATTTG
1 ATTAATTTA
100134405 ATTAATTTA
1 ATTAATTTA
100134414 ATT
1 ATT
100134417 TTACTTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
6 4 0.11
7 1 0.03
8 1 0.03
9 23 0.64
10 7 0.19
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (9 bp):
ATTAATTTA
Found at i:100134390 original size:24 final size:24
Alignment explanation
Indices: 100134363--100134416 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
100134353 AAATGTCATA
100134363 TTAATTCTAATTAATTTGATTAAT
1 TTAATTCTAATTAATTTGATTAAT
100134387 TTAATTCTAATTAATTTGATTAAT
1 TTAATTCTAATTAATTTGATTAAT
100134411 TTAATT
1 TTAATT
100134417 TTACTTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (24 bp):
TTAATTCTAATTAATTTGATTAAT
Found at i:100137158 original size:44 final size:44
Alignment explanation
Indices: 100137101--100137186 Score: 136
Period size: 44 Copynumber: 2.0 Consensus size: 44
100137091 TATATATGAG
* * *
100137101 GCATCTGAGCTCGTTGAATTGGTCCGAGTTCATTATGGATGCCA
1 GCATCCGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGCCA
*
100137145 GCATCCGAACTCGTTGAATTGGTCTGAGTTCATAATGGATGC
1 GCATCCGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGC
100137187 AATACATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (44 bp):
GCATCCGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGCCA
Found at i:100138205 original size:30 final size:30
Alignment explanation
Indices: 100138171--100138229 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
100138161 TTTTCGGGCA
* *
100138171 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
100138201 TAGGGGCAAAATGGTCATTTTACCAAAGT
1 TAGGGGCAAAATGGTCATTTTACCAAAGT
100138230 TGTAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:100138640 original size:47 final size:45
Alignment explanation
Indices: 100138569--100138837 Score: 204
Period size: 47 Copynumber: 5.8 Consensus size: 45
100138559 TGATTTGTGC
* *
100138569 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCTACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACA-GATGAGA
* * *
100138615 GCCAGTGTAAGACCATGTCTGGGACATGGTATCGGAAC-AGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG--CTACAGATGAGA
* * * *
100138663 GCCAGTGTAAGACATGTTTGGGACATGCATCAGCCTTGACA-AAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGC-T-ACAGATGAGA
* * * * * *
100138710 GCCAATGTAAGACGTGTTTGGGACACGCATCGGCTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGATG-AGA
* * * *
100138754 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-T--ACAGATGAGA
*
100138802 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
100138838 AATATATATA
Statistics
Matches: 175, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 30 0.17
45 3 0.02
46 18 0.10
47 60 0.34
48 38 0.22
49 16 0.09
50 8 0.05
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAGATGAGA
Found at i:100138732 original size:94 final size:91
Alignment explanation
Indices: 100138569--100138839 Score: 262
Period size: 94 Copynumber: 2.9 Consensus size: 91
100138559 TGATTTGTGC
* * * *
100138569 GCCAGTGTAAGACATGTCTGGGACATGCTTC-GGCTACATTATGAGAGCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTACA-TAAGAGAGCCAATGTAAGACCATGT
* *
100138633 CTGGGACATGGTATCGG-AACAGAGATGAGT
65 CTGGGACA-CGCATCGGCAA-AGAG-T-AGT
* * *
100138663 GCCAGTGTAAGACATGTTTGGGACATGCATCAGCCTTGACA-AAGATAGCCAATGTAAGA-CGTG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCC-T-ACATAAGAGAGCCAATGTAAGACCATG
* * *
100138726 TTTGGGACACGCATCGGCTAAGAGTTGT
64 TCTGGGACACGCATCGGCAAAGAGTAGT
* * * *
100138754 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTACATA-A-GAGAGCCAATGTAAGACCATG
* *
100138819 TCTGGAACATGGCATCGGCAA
64 TCTGGGACA-CGCATCGGCAA
100138840 TATATATATC
Statistics
Matches: 145, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 35 0.24
92 15 0.10
93 20 0.14
94 50 0.34
95 17 0.12
96 1 0.01
97 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTACATAAGAGAGCCAATGTAAGACCATGTC
TGGGACACGCATCGGCAAAGAGTAGT
Found at i:100143509 original size:21 final size:22
Alignment explanation
Indices: 100143483--100143524 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
100143473 CTCTTGAAAC
100143483 AGGGGT-ACACGCCCGTGTGGA
1 AGGGGTGACACGCCCGTGTGGA
*
100143504 AGGGGTGACACTCCCGTGTGG
1 AGGGGTGACACGCCCGTGTGG
100143525 CCTTCTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.24, G:0.43, T:0.17
Consensus pattern (22 bp):
AGGGGTGACACGCCCGTGTGGA
Found at i:100144173 original size:37 final size:37
Alignment explanation
Indices: 100144121--100144193 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
100144111 AAATATCTCC
* * *
100144121 AATTCTCACAGCAATATAAGGCTAAATCAACCACAAT
1 AATTCACACAACAATATAAGACTAAATCAACCACAAT
100144158 AATTCACACAACAATATAAGACTAAATCAACCACAA
1 AATTCACACAACAATATAAGACTAAATCAACCACAA
100144194 CATGAATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.51, C:0.25, G:0.05, T:0.19
Consensus pattern (37 bp):
AATTCACACAACAATATAAGACTAAATCAACCACAAT
Found at i:100144699 original size:62 final size:62
Alignment explanation
Indices: 100144621--100144749 Score: 240
Period size: 62 Copynumber: 2.1 Consensus size: 62
100144611 TCCCAATATA
*
100144621 TCATAACTCGCACAAAGAGTAAATGTTCATAAAAAATCTTACTCATGTTCATTCCTCGCTAT
1 TCATAACTCACACAAAGAGTAAATGTTCATAAAAAATCTTACTCATGTTCATTCCTCGCTAT
*
100144683 TCATAACTCACACAAAGAGTAAATGTTCATAACAAATCTTACTCATGTTCATTCCTCGCTAT
1 TCATAACTCACACAAAGAGTAAATGTTCATAAAAAATCTTACTCATGTTCATTCCTCGCTAT
100144745 TCATA
1 TCATA
100144750 CAACAAGAAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.33
Consensus pattern (62 bp):
TCATAACTCACACAAAGAGTAAATGTTCATAAAAAATCTTACTCATGTTCATTCCTCGCTAT
Found at i:100144989 original size:47 final size:47
Alignment explanation
Indices: 100144915--100145182 Score: 193
Period size: 49 Copynumber: 5.6 Consensus size: 47
100144905 CGATGCCGAC
* * * * **
100144915 GCCATGTTCCAAACATGGTTTTACACTGGCTTTCACGTCTAAGTCAAT
1 GCCATGTCCCGAACA-GGTCTTACACTGGCTTTCACATCTAAGTTGAT
* * *
100144963 GCCATATCCCGAACAGGTCTTACACTGGCTTACATACAT-TGAGGTTGAT
1 GCCATGTCCCGAACAGGTCTTACACTGGCTTTC--ACATCT-AAGTTGAT
* * * *
100145012 GCCATGT-CCTAGACATGTCTTACACTAGCTCTCACATCTAAGTTGAT
1 GCCATGTCCCGA-ACAGGTCTTACACTGGCTTTCACATCTAAGTTGAT
* * * * *
100145059 GCCATGTCCCGAACAGGTCTTACACTGACTTACATACATCGAGGCTGAT
1 GCCATGTCCCGAACAGGTCTTACACTGGCTTTC--ACATCTAAGTTGAT
* * * ** *
100145108 GCCATGT-CCTAGACATGTCTTACACTGGCTCTCACTTATCTGTGTCGAT
1 GCCATGTCCCGA-ACAGGTCTTACACTGGCTTTCAC--ATCTAAGTTGAT
100145157 GCCATGTCCC-AGACAGGTCTTACACT
1 GCCATGTCCCGA-ACAGGTCTTACACT
100145183 AACACACCTC
Statistics
Matches: 172, Mismatches: 36, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
47 52 0.30
48 23 0.13
49 95 0.55
50 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
GCCATGTCCCGAACAGGTCTTACACTGGCTTTCACATCTAAGTTGAT
Found at i:100145080 original size:96 final size:96
Alignment explanation
Indices: 100144935--100145182 Score: 363
Period size: 96 Copynumber: 2.6 Consensus size: 96
100144925 AAACATGGTT
* * * * *
100144935 TTACACTGGCTTTCACGTCTAAGTCAATGCCATATCCCGAACAGGTCTTACACTGGCTTACATAC
1 TTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCCGAACAGGTCTTACACTGACTTACATAC
* *
100145000 ATTGAGGTTGATGCCATGTCCTAGACATGTC
66 ATCGAGGCTGATGCCATGTCCTAGACATGTC
* *
100145031 TTACACTAGCTCTCACATCTAAGTTGATGCCATGTCCCGAACAGGTCTTACACTGACTTACATAC
1 TTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCCGAACAGGTCTTACACTGACTTACATAC
100145096 ATCGAGGCTGATGCCATGTCCTAGACATGTC
66 ATCGAGGCTGATGCCATGTCCTAGACATGTC
**
100145127 TTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCC-AGACAGGTCTTACACT
1 TTACACTGGCTCTCAC--ATCTAAGTCGATGCCATGTCCCGA-ACAGGTCTTACACT
100145183 AACACACCTC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
96 102 0.75
97 1 0.01
98 33 0.24
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (96 bp):
TTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCCGAACAGGTCTTACACTGACTTACATAC
ATCGAGGCTGATGCCATGTCCTAGACATGTC
Found at i:100146600 original size:50 final size:50
Alignment explanation
Indices: 100146478--100146759 Score: 275
Period size: 50 Copynumber: 5.7 Consensus size: 50
100146468 TGGTACGCAC
* * ** * *
100146478 AGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATC-CAGTACATGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGA-TACACGT
100146527 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
*
100146577 AGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
* * * ** * * *
100146627 AGTAGCCTGCACTTAGTACTGCACACGTGATCGAAGTTATCGGGTA-AGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGATACA-CGT
* * * ** * * *
100146678 AGTAGCCTGCACTTAGTACTATACATGCGACC-AATAATCCGGTACATGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
* * *
100146727 AGTATCCTGTACTTAGTACTAAACACGTGACCT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCT
100146760 CACAATAGAT
Statistics
Matches: 197, Mismatches: 30, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
49 66 0.34
50 95 0.48
51 36 0.18
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
Found at i:100149476 original size:39 final size:39
Alignment explanation
Indices: 100149355--100149523 Score: 225
Period size: 39 Copynumber: 4.3 Consensus size: 39
100149345 GCTCCTCGTT
* * *
100149355 CAAATGCCTTCGGGACATATCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
100149395 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
100149435 CAAATGCCTTCGGGCTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
100149474 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
100149513 CAAATGCCTTC
1 CAAATGCCTTC
100149524 AGATCTTAGT
Statistics
Matches: 119, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 71 0.60
40 46 0.39
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:100149538 original size:118 final size:119
Alignment explanation
Indices: 100149355--100149574 Score: 265
Period size: 118 Copynumber: 1.9 Consensus size: 119
100149345 GCTCCTCGTT
* * *
100149355 CAAATGCCTTCGGGACATATCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGAGACTTAACCCGG
*
100149420 AT-TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
66 ATATT-GTAACTTAGCAC-AA-GCCTTCGGGACTTAGCCCAGAATTAGTATCTCGCA
* **
100149474 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-AGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGAGA-CTTAACC
*
100149535 CGGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCC
63 CGGATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCC
100149575 GGACATCATT
Statistics
Matches: 87, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
117 14 0.16
118 52 0.60
119 21 0.24
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGAGACTTAACCCGG
ATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCAGAATTAGTATCTCGCA
Found at i:100149561 original size:78 final size:79
Alignment explanation
Indices: 100149392--100149577 Score: 229
Period size: 79 Copynumber: 2.4 Consensus size: 79
100149382 ATAGTAATTC
* * *
100149392 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGCTTAGCCC
*
100149457 AGAATTAGTATCTC
66 AGAATTAGTATCTA
* * *
100149471 GCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCAGATCTTAGTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GAGCTTAGCC
*
100149535 CGGATATT-GTCA-CTTA
65 CAGA-ATTAGT-ATC-TA
100149551 GCAC-AA-GCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGACTTAGCCCGGA
100149578 CATCATTCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 42 0.45
79 43 0.46
80 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGCTTAGCCC
AGAATTAGTATCTA
Found at i:100154650 original size:50 final size:50
Alignment explanation
Indices: 100154585--100155244 Score: 411
Period size: 50 Copynumber: 13.2 Consensus size: 50
100154575 GCAGTGGAAC
* * * * *
100154585 AGATTAACGCCACAACGGCGAACCTGGCTTCCCCGACATTGTAGTTAAAG
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
* *** * * * * ** *
100154635 AGATTAAAGCTACAACAACGAATCTTACGTCCCAGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAG
**
100154685 AGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAGTTCAAA-
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTT-AAAG
* * * * * * * ** *
100154735 AGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCGA-TGCAGTGGAAT
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAG
* * *
100154785 AGATTAAAGCCACATCGGTGAATCTGGCTTCCCCGACATTGTAGTTAAAG
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
* * * * * * ** *
100154835 AGATTAAAGCTACAACAGTGAATCTTACCTCCCAGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAG
* * *
100154885 AGGTTAAAACCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
* * * * * * ** *
100154935 AGATTAAAGCTACAACAGTGAATCTTACTTCCCTGGC--TGATAAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTG--CAGTTAAAG
* *
100154985 AGATTAAAGCCACATCGGTAAATCTTGCTTCCCCGACATTGCAGTTAAAG
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
* * * * * ** ** *
100155035 AGATTAAAGCTACAA-GAATGAATATTACTTCCCTGGTGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACG-GTGAATCTTGCTTCCC-CGACATTGCAGTTAAAG
* *
100155085 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
* **** * * **** ** *
100155135 AGATTAAAGCTACAACAACAAATCTTACTTCCCTGGTGGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
* * * * *
100155185 AGATTAAAGCCACATCAGTGAATCTCGCTTCCCTGACATTGCAGCTAAA-
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
100155234 AGGATTAAAGC
1 A-GATTAAAGC
100155245 TGCCATAAAG
Statistics
Matches: 444, Mismatches: 149, Indels: 34
0.71 0.24 0.05
Matches are distributed among these distances:
48 2 0.00
49 9 0.02
50 423 0.95
51 8 0.02
52 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAG
Found at i:100154739 original size:100 final size:100
Alignment explanation
Indices: 100154565--100155282 Score: 976
Period size: 100 Copynumber: 7.2 Consensus size: 100
100154555 AATCTTATCC
* * * * * * *
100154565 CCCAAGCGATGCAGTGGAACAGATTAACGCCACAACGGCGAACCTGGCTTCCCCGACATTGTAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
*
100154630 TAAAGAGATTAAAGCTACAACAACGAATCTTACGT
66 TAAAGAGATTAAAGCTACAACAACGAATCTTACTT
*
100154665 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
* *
100154730 TCAAA-AGATTAAAGCTACAACAGCGAATCTTACCT
66 T-AAAGAGATTAAAGCTACAACAACGAATCTTACTT
* * *
100154765 CCCAGGCGATGCAGTGGAATAGATTAAAGCCACATCGGTGAATCTGGCTTCCCCGACATTGTAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
** *
100154830 TAAAGAGATTAAAGCTACAACAGTGAATCTTACCT
66 TAAAGAGATTAAAGCTACAACAACGAATCTTACTT
* *
100154865 CCCAGGCGATGCAGTGGAACAGGTTAAAACCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
**
100154930 TAAAGAGATTAAAGCTACAACAGTGAATCTTACTT
66 TAAAGAGATTAAAGCTACAACAACGAATCTTACTT
* * *
100154965 CCCTGGCTGAT-AAGTGGAACAGATTAAAGCCACATCGGTAAATCTTGCTTCCCCGACATTGCAG
1 CCCAGGC-GATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAG
* * *
100155029 TTAAAGAGATTAAAGCTACAAGAATGAATATTACTT
65 TTAAAGAGATTAAAGCTACAACAACGAATCTTACTT
* *
100155065 CCCTGGTGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
* *
100155130 TAAAAAGATTAAAGCTACAACAACAAATCTTACTT
66 TAAAGAGATTAAAGCTACAACAACGAATCTTACTT
* * * * * * *
100155165 CCCTGGTGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTCGCTTCCCTGACATTGCAGC
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
*
100155230 TAAA-AGGATTAAAGCTGCCATA-AAGGCGAATCTTACTT
66 TAAAGA-GATTAAAGCT-ACA-ACAA--CGAATCTTACTT
* *
100155268 CCCTGGCGGTGCAGT
1 CCCAGGCGATGCAGT
100155283 TAAAAATCTT
Statistics
Matches: 564, Mismatches: 45, Indels: 15
0.90 0.07 0.02
Matches are distributed among these distances:
99 7 0.01
100 521 0.92
101 10 0.02
102 1 0.00
103 25 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
TAAAGAGATTAAAGCTACAACAACGAATCTTACTT
Found at i:100156283 original size:22 final size:22
Alignment explanation
Indices: 100156247--100156289 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
100156237 CCTTCTTTAG
* *
100156247 TTTAGGTTTTGTTTTAGTTTTT
1 TTTAGGGTTTATTTTAGTTTTT
*
100156269 TTTAGGGTTTATTTTGGTTTT
1 TTTAGGGTTTATTTTAGTTTT
100156290 AAATTCGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.21, T:0.70
Consensus pattern (22 bp):
TTTAGGGTTTATTTTAGTTTTT
Found at i:100156926 original size:23 final size:25
Alignment explanation
Indices: 100156879--100156925 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
100156869 TTTAGATTTA
*
100156879 TTATCATATATTTGTTTTTAAAAAT
1 TTATCATATATTTATTTTTAAAAAT
100156904 TTATCATATA-TTATTTTTAAAA
1 TTATCATATATTTATTTTTAAAA
100156926 TGTTGTCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (25 bp):
TTATCATATATTTATTTTTAAAAAT
Found at i:100157944 original size:19 final size:19
Alignment explanation
Indices: 100157920--100157957 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
100157910 ACTCACTGAG
100157920 TGTAATGACCCAAATTTAC
1 TGTAATGACCCAAATTTAC
100157939 TGTAATGACCCAAATTTAC
1 TGTAATGACCCAAATTTAC
100157958 CCGGCCTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
TGTAATGACCCAAATTTAC
Found at i:100158698 original size:22 final size:22
Alignment explanation
Indices: 100158662--100158704 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
100158652 CCTTCTTCAG
* *
100158662 TTTAGGTTTTGTTTTAGTTTTT
1 TTTAGGGTTTATTTTAGTTTTT
*
100158684 TTTAGGGTTTATTTTGGTTTT
1 TTTAGGGTTTATTTTAGTTTT
100158705 AAATTCGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.21, T:0.70
Consensus pattern (22 bp):
TTTAGGGTTTATTTTAGTTTTT
Found at i:100159340 original size:23 final size:25
Alignment explanation
Indices: 100159293--100159339 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
100159283 TTTAGATTTA
*
100159293 TTATCATATATTTGTTTTTAAAAAT
1 TTATCATATATTTATTTTTAAAAAT
100159318 TTATCATATA-TTATTTTTAAAA
1 TTATCATATATTTATTTTTAAAA
100159340 TGTTGTCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (25 bp):
TTATCATATATTTATTTTTAAAAAT
Found at i:100169400 original size:18 final size:18
Alignment explanation
Indices: 100169365--100169409 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
100169355 GCAATAAGTG
*
100169365 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATGAATA
100169383 ACGTTTTGAAAGA-GAATA
1 ACGTTTTGAAA-ATGAATA
100169401 AC-TTTTGAA
1 ACGTTTTGAA
100169410 TACGAATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 7 0.28
18 17 0.68
19 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (18 bp):
ACGTTTTGAAAATGAATA
Found at i:100169901 original size:18 final size:18
Alignment explanation
Indices: 100169878--100169949 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 18
100169868 GACTTTATAA
*
100169878 AATTTTTATATATTTTAC
1 AATTTTTATATATTTTAT
100169896 AATTTTTTATATATTTT-T
1 AA-TTTTTATATATTTTAT
* *
100169914 TATGATTTATATATTTTTAT
1 AAT-TTTTATATA-TTTTAT
100169934 AATTTTTA-ATATTTTA
1 AATTTTTATATATTTTA
100169950 ATATTTTACT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
17 6 0.13
18 14 0.31
19 22 0.49
20 3 0.07
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (18 bp):
AATTTTTATATATTTTAT
Found at i:100169912 original size:9 final size:9
Alignment explanation
Indices: 100169881--100169957 Score: 63
Period size: 9 Copynumber: 8.6 Consensus size: 9
100169871 TTTATAAAAT
100169881 TTTTATATA
1 TTTTATATA
* *
100169890 TTTTACAATT
1 TTTTA-TATA
100169900 TTTTATATA
1 TTTTATATA
*
100169909 TTTTTTATGA
1 TTTTATAT-A
100169919 -TTTATATA
1 TTTTATATA
100169927 TTTT-TATAA
1 TTTTATAT-A
100169936 TTTT-TAATA
1 TTTTAT-ATA
100169945 TTTTA-ATA
1 TTTTATATA
100169953 TTTTA
1 TTTTA
100169958 CTAAAATTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
8 12 0.21
9 34 0.61
10 10 0.18
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (9 bp):
TTTTATATA
Found at i:100169947 original size:26 final size:28
Alignment explanation
Indices: 100169899--100169956 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
100169889 ATTTTACAAT
*
100169899 TTTTTATATATTTTTTATGA-TTTATATA
1 TTTTTATATATTTTTAATGATTTTA-ATA
100169927 TTTTTATA-ATTTTTAAT-ATTTTAATA
1 TTTTTATATATTTTTAATGATTTTAATA
100169953 TTTT
1 TTTT
100169957 ACTAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 8 0.29
27 12 0.43
28 8 0.29
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (28 bp):
TTTTTATATATTTTTAATGATTTTAATA
Found at i:100170018 original size:21 final size:20
Alignment explanation
Indices: 100169990--100170029 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
100169980 GTTTTTATTG
*
100169990 ATTTTAATTTTTTATAAAAA
1 ATTTTAATTTTTAATAAAAA
100170010 ATTTCTAATTTTTAATAAAA
1 ATTT-TAATTTTTAATAAAA
100170030 GCAAGGGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTTAATTTTTAATAAAAA
Found at i:100173021 original size:28 final size:31
Alignment explanation
Indices: 100172953--100173021 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 31
100172943 ATTTTCCAAC
* *
100172953 AATTTTTTATAAAAATATTCTAGTTTTACTT
1 AATTTTTCATAAAAATATTCTAGTTTTAATT
* *
100172984 TATTATTTCAT-AAATTATTC-A-TTTTAATT
1 AATT-TTTCATAAAAATATTCTAGTTTTAATT
100173013 AATTTTTCA
1 AATTTTTCA
100173022 CGAATGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 5 0.16
29 10 0.31
30 1 0.03
31 11 0.34
32 5 0.16
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (31 bp):
AATTTTTCATAAAAATATTCTAGTTTTAATT
Found at i:100185489 original size:18 final size:18
Alignment explanation
Indices: 100185441--100185489 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
100185431 TTAAAGAAAT
* *
100185441 AAAAATAAATAACTAATG
1 AAAAATAAATAAATAAAG
*
100185459 -AAAAGAAATAAATAAAG
1 AAAAATAAATAAATAAAG
*
100185476 AAAAATAAACAAAT
1 AAAAATAAATAAAT
100185490 GAAATAAATC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.16
Consensus pattern (18 bp):
AAAAATAAATAAATAAAG
Found at i:100191141 original size:14 final size:14
Alignment explanation
Indices: 100191122--100191148 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
100191112 GTTTACTTTA
100191122 GTTTGATTCATAAT
1 GTTTGATTCATAAT
100191136 GTTTGATTCATAA
1 GTTTGATTCATAA
100191149 GTTATGGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (14 bp):
GTTTGATTCATAAT
Found at i:100197434 original size:17 final size:17
Alignment explanation
Indices: 100197412--100197449 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
100197402 TATTAGGGGT
100197412 AATTTTGCA-TAAATATG
1 AATTTTGCATTAAAT-TG
*
100197429 AATTTTGGATTAAATTG
1 AATTTTGCATTAAATTG
100197446 AATT
1 AATT
100197450 CTAGAAGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (17 bp):
AATTTTGCATTAAATTG
Found at i:100202314 original size:255 final size:255
Alignment explanation
Indices: 100201862--100202614 Score: 1359
Period size: 255 Copynumber: 3.0 Consensus size: 255
100201852 TTTTCAAATC
*
100201862 GTGCTTTGGAATTTTTACTTTGTATTTCTATTACGTAGTTAATTTTTAGTTTTTAAATCACTTCT
1 GTGCTTTGGAATTTTTACTTTTTATTTCTATTACGTAGTTAATTTTTAGTTTTTAAATCACTTCT
100201927 TCAAAACAAAATATTTTTCCCATCACCAAAGTGTTTAATTTACATCTCATAAATATTTTTCTTTC
66 TCAAAACAAAATATTTTTCCCATCACCAAAGTGTTTAATTTACATCTCATAAATATTTTTCTTTC
*
100201992 ACAATCCTCGTGGGTACGATAACTCGGCATTTACTTGTCACTTTATTACTTGTTGCGATTGTTTA
131 ACAATCCTCGTGGGTACGATAACTCAGCATTTACTTGTCACTTTATTACTTGTTGCGATTGTTTA
* *
100202057 CACTTACACATTTCTATTGTTTCAATAGTGCCAAGACACACACATTTCATAGTTCCAATA
196 CACTTACACATTTCTGTTGTTCCAATAGTGCCAAGACACACACATTTCATAGTTCCAATA
100202117 GTGCTTTGGAATTTTTACTTTTTATTTCTATTACGTAGTTAATTTTTAGTTTTTAAATCACTTCT
1 GTGCTTTGGAATTTTTACTTTTTATTTCTATTACGTAGTTAATTTTTAGTTTTTAAATCACTTCT
100202182 TCAAAACAAAATATTTTTCCCATCACCAAAGTGTTTAATTTACATCTCATAAATATTTTTCTTTC
66 TCAAAACAAAATATTTTTCCCATCACCAAAGTGTTTAATTTACATCTCATAAATATTTTTCTTTC
* * * * *
100202247 ACAATCCTCATGGGTACGATAACTTAGCATTTACTTGCCACTTTATTACTTGTTACGATTCTTTA
131 ACAATCCTCGTGGGTACGATAACTCAGCATTTACTTGTCACTTTATTACTTGTTGCGATTGTTTA
100202312 CACTTACACATTTCTGTTGTTCCAATAGTGCCAAGACACACACATTTCATAGTTCCAATA
196 CACTTACACATTTCTGTTGTTCCAATAGTGCCAAGACACACACATTTCATAGTTCCAATA
* *
100202372 GTGCTTTGGAATTTTTACTTTTTATTTCTATTA--TAGTTAATTTTTAATTTTTAAATCACCTCT
1 GTGCTTTGGAATTTTTACTTTTTATTTCTATTACGTAGTTAATTTTTAGTTTTTAAATCACTTCT
*
100202435 TCAAAACAAAATATTTTT-CCATCACCAAAGTGTTTAATTTACATATCATAAATATTTTTCTTTC
66 TCAAAACAAAATATTTTTCCCATCACCAAAGTGTTTAATTTACATCTCATAAATATTTTTCTTTC
* *
100202499 ACAATCCTCGTGGGTACGATAACTCAACATTTACTTGTCACTTTATTACTTTTTGCGATTGTTTA
131 ACAATCCTCGTGGGTACGATAACTCAGCATTTACTTGTCACTTTATTACTTGTTGCGATTGTTTA
100202564 CACTTACACATTTCTGTTGTTCCAATAGTGCCAAGACACACACATTTCATA
196 CACTTACACATTTCTGTTGTTCCAATAGTGCCAAGACACACACATTTCATA
100202615 TGTCAGATCG
Statistics
Matches: 479, Mismatches: 19, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
252 154 0.32
253 46 0.10
255 279 0.58
ACGTcount: A:0.29, C:0.19, G:0.09, T:0.43
Consensus pattern (255 bp):
GTGCTTTGGAATTTTTACTTTTTATTTCTATTACGTAGTTAATTTTTAGTTTTTAAATCACTTCT
TCAAAACAAAATATTTTTCCCATCACCAAAGTGTTTAATTTACATCTCATAAATATTTTTCTTTC
ACAATCCTCGTGGGTACGATAACTCAGCATTTACTTGTCACTTTATTACTTGTTGCGATTGTTTA
CACTTACACATTTCTGTTGTTCCAATAGTGCCAAGACACACACATTTCATAGTTCCAATA
Found at i:100203746 original size:27 final size:28
Alignment explanation
Indices: 100203715--100203976 Score: 161
Period size: 27 Copynumber: 9.7 Consensus size: 28
100203705 TTAGTGTGCG
*
100203715 CCACAAAGGCATTCC-CTTCATAGATCA
1 CCACAAAGGCATTCCTTTTCATAGATCA
* * *
100203742 CCACAAAGGTA-TCCTTTTCGTAGATCG
1 CCACAAAGGCATTCCTTTTCATAGATCA
* **
100203769 CCATAAAGGC-TTCCTTTTCATAGATTG
1 CCACAAAGGCATTCCTTTTCATAGATCA
* *
100203796 CCATAAAGGC-TTCTTTTTTC-TAGATCA
1 CCACAAAGGCATTC-CTTTTCATAGATCA
* *
100203823 CCACAAA--AATTTCATTTTTC-TAGATCA
1 CCACAAAGGCA-TTC-CTTTTCATAGATCA
* *
100203850 CCACAAAGGC-TTCCTTTTTATAAATCA
1 CCACAAAGGCATTCCTTTTCATAGATCA
* * * * *
100203877 CCACAAGGGC-TTTCTTTTTAAAGATCG
1 CCACAAAGGCATTCCTTTTCATAGATCA
* * *
100203904 CCATAAAGGC-TTCCTTTTTATAGATCG
1 CCACAAAGGCATTCCTTTTCATAGATCA
* * * *
100203931 CCGCAAAGGC-TTCCTTTTTATAAATCG
1 CCACAAAGGCATTCCTTTTCATAGATCA
* * *
100203958 CCACGAAGGCTTTCTTTTT
1 CCACAAAGGCATTCCTTTT
100203977 TGGCGTGTTC
Statistics
Matches: 193, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
26 7 0.04
27 174 0.90
28 12 0.06
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (28 bp):
CCACAAAGGCATTCCTTTTCATAGATCA
Found at i:100203820 original size:54 final size:54
Alignment explanation
Indices: 100203715--100203976 Score: 233
Period size: 54 Copynumber: 4.9 Consensus size: 54
100203705 TTAGTGTGCG
* * ** *
100203715 CCACAAAGGCATTCC-CTTCATAGATCACCACAAAGG-TATCCTTTTCGTAGATCG
1 CCACAAAGGC-TTCCTTTTCATAGATCGCCACAAAGGCT-TCCTTTTTATAGATCA
* * * * *
100203769 CCATAAAGGCTTCCTTTTCATAGATTGCCATAAAGGCTTCTTTTTTCTAGATCA
1 CCACAAAGGCTTCCTTTTCATAGATCGCCACAAAGGCTTCCTTTTTATAGATCA
*** * * *
100203823 CCACAAAAATTTCATTTTTC-TAGATCACCACAAAGGCTTCCTTTTTATAAATCA
1 CCACAAAGGCTTC-CTTTTCATAGATCGCCACAAAGGCTTCCTTTTTATAGATCA
* * * * * *
100203877 CCACAAGGGCTTTCTTTTTAAAGATCGCCATAAAGGCTTCCTTTTTATAGATCG
1 CCACAAAGGCTTCCTTTTCATAGATCGCCACAAAGGCTTCCTTTTTATAGATCA
* * * * *
100203931 CCGCAAAGGCTTCCTTTTTATAAATCGCCACGAAGGCTTTCTTTTT
1 CCACAAAGGCTTCCTTTTCATAGATCGCCACAAAGGCTTCCTTTTT
100203977 TGGCGTGTTC
Statistics
Matches: 164, Mismatches: 40, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
53 8 0.05
54 150 0.91
55 6 0.04
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (54 bp):
CCACAAAGGCTTCCTTTTCATAGATCGCCACAAAGGCTTCCTTTTTATAGATCA
Found at i:100203888 original size:81 final size:80
Alignment explanation
Indices: 100203756--100203977 Score: 230
Period size: 81 Copynumber: 2.7 Consensus size: 80
100203746 AAAGGTATCC
* * * * * **
100203756 TTTTCGTAGATCGCCATAAAGGCTTCCTTTTCATAGATTGCCATAAAGGCTTCTTTTTTCTAGAT
1 TTTTC-TAGATCGCCACAAAGGCTTCCTTTTTATAAATCGCCA-CAAGGCTTCTTTTTTAAAGAT
*
100203821 CACCACAAAAATTTCAT
64 CACCACAAAAACTTCAT
* *
100203838 TTTTCTAGATCACCACAAAGGCTTCCTTTTTATAAATCACCACAAGGGCTT-TCTTTTTAAAGAT
1 TTTTCTAGATCGCCACAAAGGCTTCCTTTTTATAAATCGCCACAA-GGCTTCT-TTTTTAAAGAT
* * ** *
100203902 CGCCATAAAGGCTTCCT
64 CACCACAAAAACTTCAT
* *
100203919 TTTTATAGATCGCCGCAAAGGCTTCCTTTTTATAAATCGCCACGAAGGCTTTCTTTTTT
1 TTTTCTAGATCGCCACAAAGGCTTCCTTTTTATAAATCGCCAC-AAGGC-TTCTTTTTT
100203978 GGCGTGTTCA
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
80 3 0.03
81 98 0.84
82 14 0.12
83 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (80 bp):
TTTTCTAGATCGCCACAAAGGCTTCCTTTTTATAAATCGCCACAAGGCTTCTTTTTTAAAGATCA
CCACAAAAACTTCAT
Found at i:100207150 original size:16 final size:16
Alignment explanation
Indices: 100207129--100207160 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
100207119 TTTGGACTAA
100207129 ATTGAATAGAATGAAT
1 ATTGAATAGAATGAAT
*
100207145 ATTGAATGGAATGAAT
1 ATTGAATAGAATGAAT
100207161 TTTCTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (16 bp):
ATTGAATAGAATGAAT
Found at i:100208636 original size:13 final size:15
Alignment explanation
Indices: 100208608--100208639 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
100208598 CTCAGCTGTG
100208608 TGTGACACATGGCCA
1 TGTGACACATGGCCA
100208623 TGTGACA-A-GGCCA
1 TGTGACACATGGCCA
100208636 TGTG
1 TGTG
100208640 TCCCTTGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.53
14 1 0.06
15 7 0.41
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (15 bp):
TGTGACACATGGCCA
Found at i:100210302 original size:37 final size:37
Alignment explanation
Indices: 100210253--100210519 Score: 230
Period size: 37 Copynumber: 7.2 Consensus size: 37
100210243 CAATCTGCTA
* * * **
100210253 GACTTGTCCTTATGATTCAAGCTAAGACAATCTGTTG
1 GACTTGTTCTTATGATTAAAGCTAAGACAGTCCATTG
* *
100210290 GGCCTGTTCTTATGATTAAAGCTAAGACAGT-CAGTTG
1 GACTTGTTCTTATGATTAAAGCTAAGACAGTCCA-TTG
* * * * * *
100210327 GACATGTCCTTAAGATTCAAGCTAAGATAGTCCACTG
1 GACTTGTTCTTATGATTAAAGCTAAGACAGTCCATTG
* * *
100210364 GACTTGTTCTTATGATTAAAGCTAAGATAATCCATTA
1 GACTTGTTCTTATGATTAAAGCTAAGACAGTCCATTG
* * * *
100210401 GACTTGTCCTTATGATTCAAGCTAAGACAGTCTACTG
1 GACTTGTTCTTATGATTAAAGCTAAGACAGTCCATTG
* * * ** *
100210438 GACTTGTTCTTATGATTAAAGTTAAGATAGTTCGCTA
1 GACTTGTTCTTATGATTAAAGCTAAGACAGTCCATTG
* * * * **
100210475 GACTTGTCCTTATAATTCAAGCTAAGACCGTCTGTTG
1 GACTTGTTCTTATGATTAAAGCTAAGACAGTCCATTG
100210512 GACTTGTT
1 GACTTGTT
100210520 TCCAAGTTTC
Statistics
Matches: 181, Mismatches: 47, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
37 179 0.99
38 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (37 bp):
GACTTGTTCTTATGATTAAAGCTAAGACAGTCCATTG
Found at i:100210378 original size:74 final size:74
Alignment explanation
Indices: 100210251--100210519 Score: 328
Period size: 74 Copynumber: 3.6 Consensus size: 74
100210241 AACAATCTGC
* * ** * *
100210251 TAGACTTGTCCTTATGATTCAAGCTAAGACAATCTGTTGGGCCTGTTCTTATGATTAAAGCTAAG
1 TAGACTTGTCCTTAAGATTCAAGCTAAGACAGTCTACTGGACTTGTTCTTATGATTAAAGCTAAG
*
100210316 ACAGTCAGT
66 ATAGTCAGT
* * * *
100210325 TGGACATGTCCTTAAGATTCAAGCTAAGATAGTCCACTGGACTTGTTCTTATGATTAAAGCTAAG
1 TAGACTTGTCCTTAAGATTCAAGCTAAGACAGTCTACTGGACTTGTTCTTATGATTAAAGCTAAG
*
100210390 ATAATCCA-T
66 ATAGT-CAGT
* *
100210399 TAGACTTGTCCTTATGATTCAAGCTAAGACAGTCTACTGGACTTGTTCTTATGATTAAAGTTAAG
1 TAGACTTGTCCTTAAGATTCAAGCTAAGACAGTCTACTGGACTTGTTCTTATGATTAAAGCTAAG
*
100210464 ATAGTTC-GC
66 ATAG-TCAGT
* **
100210473 TAGACTTGTCCTTATA-ATTCAAGCTAAGACCGTCTGTTGGACTTGTT
1 TAGACTTGTCCTTA-AGATTCAAGCTAAGACAGTCTACTGGACTTGTT
100210520 TCCAAGTTTC
Statistics
Matches: 167, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
74 164 0.98
75 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (74 bp):
TAGACTTGTCCTTAAGATTCAAGCTAAGACAGTCTACTGGACTTGTTCTTATGATTAAAGCTAAG
ATAGTCAGT
Found at i:100210516 original size:111 final size:111
Alignment explanation
Indices: 100210249--100210518 Score: 326
Period size: 111 Copynumber: 2.4 Consensus size: 111
100210239 AAAACAATCT
* * *
100210249 GCTAGACTTGTCCTTATGATTCAAGCTAAGACAATCTGTTGGGCCTGTTCTTATGATTAAAGCTA
1 GCTAGACTTGTCCTTATGATTCAAGCTAAGACAATCTGTTGGACTTGTCCTTATGATTAAAGCTA
* *
100210314 AGACAGTCAGTTGGACATGTCCTTAAGATTCAAGCTAAGATAGTCC
66 AGACAGTCAGCTGGACATGTCCTTAAGATTAAAGCTAAGATAGTCC
* * * * * ** * *
100210360 ACTGGACTTGTTCTTATGATTAAAGCTAAGATAATCCATTAGACTTGTCCTTATGATTCAAGCTA
1 GCTAGACTTGTCCTTATGATTCAAGCTAAGACAATCTGTTGGACTTGTCCTTATGATTAAAGCTA
* * * * *
100210425 AGACAGTCTA-CTGGACTTGTTCTTATGATTAAAGTTAAGATAGTTC
66 AGACAGTC-AGCTGGACATGTCCTTAAGATTAAAGCTAAGATAGTCC
* **
100210471 GCTAGACTTGTCCTTATAATTCAAGCTAAGACCGTCTGTTGGACTTGT
1 GCTAGACTTGTCCTTATGATTCAAGCTAAGACAATCTGTTGGACTTGT
100210519 TTCCAAGTTT
Statistics
Matches: 128, Mismatches: 30, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
111 127 0.99
112 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (111 bp):
GCTAGACTTGTCCTTATGATTCAAGCTAAGACAATCTGTTGGACTTGTCCTTATGATTAAAGCTA
AGACAGTCAGCTGGACATGTCCTTAAGATTAAAGCTAAGATAGTCC
Found at i:100210633 original size:14 final size:14
Alignment explanation
Indices: 100210616--100210719 Score: 91
Period size: 14 Copynumber: 7.4 Consensus size: 14
100210606 GTCTGCAGGC
100210616 ATGAATCTGCATAT
1 ATGAATCTGCATAT
* * *
100210630 ATGAATCCGTACAT
1 ATGAATCTGCATAT
*
100210644 ATGAATCCGCATAT
1 ATGAATCTGCATAT
* * * *
100210658 AAGATTCTGTATCT
1 ATGAATCTGCATAT
* *
100210672 ATGAATTTGCCTAT
1 ATGAATCTGCATAT
* *
100210686 GTGAATCTGCATCT
1 ATGAATCTGCATAT
*
100210700 ATAAATCTGCATAT
1 ATGAATCTGCATAT
100210714 ATGAAT
1 ATGAAT
100210720 TCGTACATAT
Statistics
Matches: 66, Mismatches: 24, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
14 66 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (14 bp):
ATGAATCTGCATAT
Found at i:100210647 original size:28 final size:28
Alignment explanation
Indices: 100210616--100210734 Score: 107
Period size: 28 Copynumber: 4.2 Consensus size: 28
100210606 GTCTGCAGGC
100210616 ATGAATCTGCATATATGAATCCGTA-CAT
1 ATGAATCTGCATATATGAATCCGTATC-T
* * * *
100210644 ATGAATCCGCATATAAGATTCTGTATCT
1 ATGAATCTGCATATATGAATCCGTATCT
* * * * *
100210672 ATGAATTTGCCTATGTGAATCTGCATCT
1 ATGAATCTGCATATATGAATCCGTATCT
* *
100210700 ATAAATCTGCATATATGAATTCGTA-CAT
1 ATGAATCTGCATATATGAATCCGTATC-T
100210728 ATGAATC
1 ATGAATC
100210735 CACATAAAAT
Statistics
Matches: 70, Mismatches: 19, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
27 1 0.01
28 68 0.97
29 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (28 bp):
ATGAATCTGCATATATGAATCCGTATCT
Found at i:100210733 original size:42 final size:40
Alignment explanation
Indices: 100210619--100210744 Score: 121
Period size: 42 Copynumber: 3.1 Consensus size: 40
100210609 TGCAGGCATG
*
100210619 AATCTGCATATATGAATCCGTACATATGAATCCGCATATA
1 AATCTGCATATATGAATTCGTACATATGAATCCGCATATA
* * * * * *
100210659 AGATTCTGTATCTATGAATTTG-CCTATGTGAATCTGCATCTATA
1 A-A-TCTGCATATATGAATTCGTAC-ATATGAATCCGCA--TATA
*
100210703 AATCTGCATATATGAATTCGTACATATGAATCCACATA-A
1 AATCTGCATATATGAATTCGTACATATGAATCCGCATATA
100210742 AAT
1 AAT
100210745 AATTTGTATT
Statistics
Matches: 66, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
39 4 0.06
40 3 0.05
41 2 0.03
42 50 0.76
43 2 0.03
44 5 0.08
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (40 bp):
AATCTGCATATATGAATTCGTACATATGAATCCGCATATA
Found at i:100210769 original size:84 final size:84
Alignment explanation
Indices: 100210619--100210773 Score: 213
Period size: 84 Copynumber: 1.8 Consensus size: 84
100210609 TGCAGGCATG
* * * * ***
100210619 AATCTGCATATATGAATCCGTACATATGAATCCGCATATAAGATTCTGTATCTATGAATTTGCCT
1 AATCTGCATATATGAATCCGTACATATGAATCCACATAAAAAATTCTGTATCTATAAATCCACCT
100210684 ATGTGAATCTGCATCTATA
66 ATGTGAATCTGCATCTATA
* *
100210703 AATCTGCATATATGAATTCGTACATATGAATCCACATAAAATAATT-TGTATTTATAAATCCACC
1 AATCTGCATATATGAATCCGTACATATGAATCCACATAAAA-AATTCTGTATCTATAAATCCACC
100210767 TATGTGA
65 TATGTGA
100210774 TTATGCATTT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
84 58 0.95
85 3 0.05
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (84 bp):
AATCTGCATATATGAATCCGTACATATGAATCCACATAAAAAATTCTGTATCTATAAATCCACCT
ATGTGAATCTGCATCTATA
Found at i:100211714 original size:17 final size:19
Alignment explanation
Indices: 100211678--100211725 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
100211668 TAAAAACCCT
*
100211678 AACCCATAAAAATCTCT-A
1 AACCTATAAAAATCTCTAA
100211696 AACCTATAAAAAT-TCTAA
1 AACCTATAAAAATCTCTAA
100211714 AACCTA-AAAAAT
1 AACCTATAAAAAT
100211726 ATAAGCCATC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 9 0.32
18 19 0.68
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.23
Consensus pattern (19 bp):
AACCTATAAAAATCTCTAA
Found at i:100212946 original size:16 final size:16
Alignment explanation
Indices: 100212925--100212990 Score: 96
Period size: 16 Copynumber: 4.0 Consensus size: 16
100212915 TTTTAGAAAT
100212925 TTTTTAAAATTTAAAA
1 TTTTTAAAATTTAAAA
100212941 TTTTTAAAATTTAAAA
1 TTTTTAAAATTTAAAA
* *
100212957 ATTTAAAAATTTAAAA
1 TTTTTAAAATTTAAAA
100212973 TTTTTTTAAAATTTAAAA
1 --TTTTTAAAATTTAAAA
100212991 ATCGAAATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
16 30 0.68
18 14 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTTAAAATTTAAAA
Found at i:100212959 original size:8 final size:8
Alignment explanation
Indices: 100212930--100212992 Score: 72
Period size: 8 Copynumber: 7.6 Consensus size: 8
100212920 GAAATTTTTT
100212930 AAAATTTA
1 AAAATTTA
* *
100212938 AAATTTTT
1 AAAATTTA
100212946 AAAATTTA
1 AAAATTTA
100212954 AAAATTTA
1 AAAATTTA
100212962 AAAATTTA
1 AAAATTTA
* *
100212970 AAATTTTTTT
1 AAA--ATTTA
100212980 AAAATTTA
1 AAAATTTA
100212988 AAAAT
1 AAAAT
100212993 CGAAATTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
8 39 0.87
10 6 0.13
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAAATTTA
Found at i:100212990 original size:7 final size:7
Alignment explanation
Indices: 100212927--100212975 Score: 62
Period size: 7 Copynumber: 6.4 Consensus size: 7
100212917 TTAGAAATTT
100212927 TTTAAAA
1 TTTAAAA
100212934 TTTAAAA
1 TTTAAAA
100212941 TTTTTAAAA
1 --TTTAAAA
100212950 TTTAAAAA
1 TTT-AAAA
100212958 TTTAAAAA
1 TTT-AAAA
100212966 TTTAAAA
1 TTTAAAA
100212973 TTT
1 TTT
100212976 TTTTAAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
7 17 0.44
8 15 0.38
9 7 0.18
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TTTAAAA
Found at i:100213012 original size:26 final size:26
Alignment explanation
Indices: 100212921--100213012 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 26
100212911 ATTATTTTAG
* *
100212921 AAATTTTT-TAAAATTTAAAATTTTTA
1 AAATTTTTATAAAATTTAAAA-ATTCA
*
100212947 AAA--TTTA-AAAATTTAAAAATTTA
1 AAATTTTTATAAAATTTAAAAATTCA
* *
100212970 AAATTTTTTTAAAATTTAAAAA-TCG
1 AAATTTTTATAAAATTTAAAAATTCA
100212995 AAATTTTTATAAATATTT
1 AAATTTTTATAAA-ATTT
100213013 TGAATCTTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
23 7 0.12
24 14 0.25
25 16 0.29
26 19 0.34
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (26 bp):
AAATTTTTATAAAATTTAAAAATTCA
Found at i:100213064 original size:10 final size:10
Alignment explanation
Indices: 100213023--100213063 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
100213013 TGAATCTTAA
100213023 AAATTATTTT
1 AAATTATTTT
100213033 AAATTATTTT
1 AAATTATTTT
100213043 AAAATTATTTT
1 -AAATTATTTT
*
100213054 GAATTATTTT
1 AAATTATTTT
100213064 GTAATTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (10 bp):
AAATTATTTT
Found at i:100213069 original size:11 final size:11
Alignment explanation
Indices: 100213023--100213073 Score: 63
Period size: 10 Copynumber: 4.9 Consensus size: 11
100213013 TGAATCTTAA
100213023 AAATTATTTT-
1 AAATTATTTTG
*
100213033 AAATTATTTTA
1 AAATTATTTTG
100213044 AAATTATTTTG
1 AAATTATTTTG
100213055 -AATTATTTTG
1 AAATTATTTTG
*
100213065 TAATT-TTTT
1 AAATTATTTT
100213074 TTGAGAGAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
10 24 0.63
11 14 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (11 bp):
AAATTATTTTG
Found at i:100213074 original size:21 final size:21
Alignment explanation
Indices: 100213022--100213063 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
100213012 TTGAATCTTA
100213022 AAAATTATTTTAAATTATTTT
1 AAAATTATTTTAAATTATTTT
*
100213043 AAAATTATTTTGAATTATTTT
1 AAAATTATTTTAAATTATTTT
100213064 GTAATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
AAAATTATTTTAAATTATTTT
Found at i:100214043 original size:8 final size:8
Alignment explanation
Indices: 100214019--100214076 Score: 62
Period size: 8 Copynumber: 6.9 Consensus size: 8
100214009 TATAGATTTG
100214019 TAAAAATTT
1 TAAAAA-TT
*
100214028 TTAAAATT
1 TAAAAATT
100214036 TAAAAATT
1 TAAAAATT
100214044 TAAAAATT
1 TAAAAATT
*
100214052 TAAAATTTTT
1 TAAAA--ATT
*
100214062 TTAAAATT
1 TAAAAATT
100214070 TAAAAAT
1 TAAAAAT
100214077 CGAAATTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
8 30 0.73
9 5 0.12
10 6 0.15
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TAAAAATT
Found at i:100214074 original size:25 final size:25
Alignment explanation
Indices: 100214038--100214119 Score: 65
Period size: 25 Copynumber: 3.1 Consensus size: 25
100214028 TTAAAATTTA
100214038 AAAATTTAAAAATTTAAAATTTTTTT
1 AAAATTT-AAAATTTAAAATTTTTTT
* ** *
100214064 AAAATTTAAAAATCGAAATTTTTAT
1 AAAATTTAAAATTTAAAATTTTTTT
** *
100214089 AAATATTTTGAATCTTAAAAATTATTTT
1 AAA-ATTTAAAAT-TT-AAAATTTTTTT
100214117 AAA
1 AAA
100214120 TTATTTTAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
25 17 0.40
26 13 0.31
27 1 0.02
28 11 0.26
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (25 bp):
AAAATTTAAAATTTAAAATTTTTTT
Found at i:100214096 original size:26 final size:26
Alignment explanation
Indices: 100214034--100214096 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 26
100214024 ATTTTTAAAA
*
100214034 TTTA-AAAATTTAAAAATTTAAAATT
1 TTTATAAAATTTAAAAATTCAAAATT
* *
100214059 TTTTTAAAATTTAAAAA-TCGAAATT
1 TTTATAAAATTTAAAAATTCAAAATT
100214084 TTTATAAATATTT
1 TTTATAAA-ATTT
100214097 TGAATCTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 16 0.50
26 16 0.50
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (26 bp):
TTTATAAAATTTAAAAATTCAAAATT
Found at i:100214148 original size:10 final size:10
Alignment explanation
Indices: 100214107--100214147 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
100214097 TGAATCTTAA
100214107 AAATTATTTT
1 AAATTATTTT
100214117 AAATTATTTT
1 AAATTATTTT
100214127 AAAATTATTTT
1 -AAATTATTTT
*
100214138 GAATTATTTT
1 AAATTATTTT
100214148 GTAATTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (10 bp):
AAATTATTTT
Found at i:100214153 original size:11 final size:11
Alignment explanation
Indices: 100214107--100214157 Score: 63
Period size: 10 Copynumber: 4.9 Consensus size: 11
100214097 TGAATCTTAA
100214107 AAATTATTTT-
1 AAATTATTTTG
*
100214117 AAATTATTTTA
1 AAATTATTTTG
100214128 AAATTATTTTG
1 AAATTATTTTG
100214139 -AATTATTTTG
1 AAATTATTTTG
*
100214149 TAATT-TTTT
1 AAATTATTTT
100214158 TTGAGAGAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
10 24 0.63
11 14 0.37
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (11 bp):
AAATTATTTTG
Found at i:100214158 original size:21 final size:21
Alignment explanation
Indices: 100214106--100214147 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
100214096 TTGAATCTTA
100214106 AAAATTATTTTAAATTATTTT
1 AAAATTATTTTAAATTATTTT
*
100214127 AAAATTATTTTGAATTATTTT
1 AAAATTATTTTAAATTATTTT
100214148 GTAATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
AAAATTATTTTAAATTATTTT
Found at i:100222381 original size:24 final size:24
Alignment explanation
Indices: 100222354--100222415 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
100222344 CTTTTTTGTT
*
100222354 TTCACCTCTACCCTCGTAC-TCATC
1 TTCACCTCCACCCTCGT-CTTCATC
* * *
100222378 TTCATCTCCATCGTCGTCTTCATC
1 TTCACCTCCACCCTCGTCTTCATC
*
100222402 TTCACCTTCACCCT
1 TTCACCTCCACCCT
100222416 TGGCTTTGTC
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.15, C:0.44, G:0.05, T:0.37
Consensus pattern (24 bp):
TTCACCTCCACCCTCGTCTTCATC
Found at i:100224434 original size:18 final size:18
Alignment explanation
Indices: 100224387--100224435 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
100224377 TAAGTGCACT
*
100224387 TTAATTATTTTGTAAAAA
1 TTAATTATTTTTTAAAAA
100224405 TTAATTATTTTTTAAAAA
1 TTAATTATTTTTTAAAAA
100224423 TTAATTATTTTTT
1 TTAATTATTTTTT
100224436 CGACAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTAATTATTTTTTAAAAA
Found at i:100227885 original size:20 final size:21
Alignment explanation
Indices: 100227840--100227886 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
100227830 AATGTTGATA
100227840 ATAATTAATATATTATAATAGAT
1 ATAATTAATATATTATAAT--AT
100227863 ATAATT-ATATATTAATAAT-T
1 ATAATTAATATATT-ATAATAT
100227883 ATAA
1 ATAA
100227887 CCTGTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.22
22 7 0.30
23 11 0.48
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
ATAATTAATATATTATAATAT
Found at i:100228003 original size:29 final size:30
Alignment explanation
Indices: 100227948--100228008 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
100227938 GCTTTTTGAA
* *
100227948 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
100227978 AATATTTA-AAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
100228007 AA
1 AA
100228009 AAATAATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 2 0.07
29 18 0.64
30 8 0.29
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:100231536 original size:36 final size:35
Alignment explanation
Indices: 100231495--100231564 Score: 113
Period size: 36 Copynumber: 2.0 Consensus size: 35
100231485 CACAAAGTCA
* *
100231495 GCAGGAAAGATAAATTTGTCTACACGTACCAATAT
1 GCAGGAAAGATAAATTTCTCTACACATACCAATAT
100231530 GNCAGGAAAGATAAATTTCTCTACACATACCAATA
1 G-CAGGAAAGATAAATTTCTCTACACATACCAATA
100231565 CATCCTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 1 0.03
36 31 0.97
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.24
Consensus pattern (35 bp):
GCAGGAAAGATAAATTTCTCTACACATACCAATAT
Found at i:100234799 original size:18 final size:19
Alignment explanation
Indices: 100234773--100234809 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
100234763 AATTTTGGAA
100234773 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
100234791 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
100234810 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:100238466 original size:15 final size:16
Alignment explanation
Indices: 100238446--100238475 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100238436 TTTAACTAAG
100238446 TAAAAT-AAATAAAAA
1 TAAAATAAAATAAAAA
100238461 TAAAATAAAATAAAA
1 TAAAATAAAATAAAA
100238476 TTTCTAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAAATAAAATAAAAA
Found at i:100239832 original size:21 final size:21
Alignment explanation
Indices: 100239808--100239849 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
100239798 TATTTAACCC
100239808 AAATT-AAATTAAATTAGATTA
1 AAATTAAAATT-AATTAGATTA
*
100239829 AAATTAAAATTAATTATATTA
1 AAATTAAAATTAATTAGATTA
100239850 TGAATTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
AAATTAAAATTAATTAGATTA
Found at i:100243076 original size:11 final size:11
Alignment explanation
Indices: 100243060--100243086 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
100243050 TTCTTGTCAA
100243060 AATTATAAAAT
1 AATTATAAAAT
100243071 AATTATAAAAT
1 AATTATAAAAT
100243082 AATTA
1 AATTA
100243087 AATTGTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AATTATAAAAT
Found at i:100250949 original size:58 final size:58
Alignment explanation
Indices: 100250852--100250967 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
100250842 CAATAGAGGA
100250852 GCCACCTAAATTAGAACTGAAGGTACTTCCCTCAAATTTGAAATACGTTTATTTAGGT
1 GCCACCTAAATTAGAACTGAAGGTACTTCCCTCAAATTTGAAATACGTTTATTTAGGT
* * *
100250910 GCCACCTAAATTAGAACTGAAGGTACTTCCTTCACATTTGAAATATGTTTATTTAGGT
1 GCCACCTAAATTAGAACTGAAGGTACTTCCCTCAAATTTGAAATACGTTTATTTAGGT
100250968 AACTCTTCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (58 bp):
GCCACCTAAATTAGAACTGAAGGTACTTCCCTCAAATTTGAAATACGTTTATTTAGGT
Found at i:100254759 original size:51 final size:50
Alignment explanation
Indices: 100254582--100254818 Score: 280
Period size: 50 Copynumber: 4.6 Consensus size: 50
100254572 TCTGGTACTA
* * * *
100254582 CCAATGCCATATCCCAGATATGGTCTT-CATGGGAGCTCTCATATAGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* *
100254631 CCCATGCCATGTCCCAGACATGGTCTTAC-GGGCGACCTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATATCGGTG
* *
100254681 CCAATGCCATGTCCCACACATGGTCTTACATGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* * *
100254731 CCAAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTCTCATAATCTCAATGATG
1 CC-AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTG
*
100254788 CCAATGCCATGTCTCAGACATGGTCTTACAT
1 CCAATGCCATGTCCCAGACATGGTCTTACAT
100254819 AGAATCTTTT
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
49 26 0.16
50 61 0.38
51 40 0.25
54 2 0.01
56 26 0.16
57 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
Found at i:100254760 original size:101 final size:103
Alignment explanation
Indices: 100254582--100254818 Score: 286
Period size: 101 Copynumber: 2.3 Consensus size: 103
100254572 TCTGGTACTA
* * * * *
100254582 CCAATGCCATATCCCAGATATGGTCTT-CATGGGAGCTCTCATATAGGTGCCCATGCCATGTCCC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAACGCCATGTCCC
* *
100254646 AGACATGGTCTTAC-GGGCGACCTCTCAT-A-TC-GGTG
66 AGAAATGGTCTTACAGGG-GACCTCTCATAACTCAGATG
* * *
100254681 CCAATGCCATGTCCCACACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAACGCCATGTCC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCC-AACGCCATGTCC
*
100254746 CAGAAATGGTCTTACATGGGACCTCTCATAATCTCAATGATG
65 CAGAAATGGTCTTACAGGGGACCTCTCATAA-CTC-A-GATG
*
100254788 CCAATGCCATGTCTCAGACATGGTCTTACAT
1 CCAATGCCATGTCCCAGACATGGTCTTACAT
100254819 AGAATCTTTT
Statistics
Matches: 116, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
99 24 0.21
100 21 0.18
101 34 0.29
102 3 0.03
104 2 0.02
107 32 0.28
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (103 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAACGCCATGTCCC
AGAAATGGTCTTACAGGGGACCTCTCATAACTCAGATG
Found at i:100261522 original size:50 final size:50
Alignment explanation
Indices: 100261447--100261694 Score: 246
Period size: 50 Copynumber: 4.8 Consensus size: 50
100261437 TTTCTTGTAC
* * * * *
100261447 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAACTCTCATATGGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * *
100261497 TGCCAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * *
100261547 TGCCAACGCCATG-CCCCGCACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGACCTCTCATATTGG
* * * * *
100261597 TGTCAACGCCATGTCCCAGACATGGTCTTACATAGTACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T---TGG
* *
100261653 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
100261695 TTACCCAAAT
Statistics
Matches: 162, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 3 0.02
50 117 0.72
51 4 0.02
53 1 0.01
56 37 0.23
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
Found at i:100262252 original size:50 final size:50
Alignment explanation
Indices: 100262177--100262424 Score: 246
Period size: 50 Copynumber: 4.8 Consensus size: 50
100262167 TTTCTTGTAC
* * * * *
100262177 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAACTCTCATATGGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * *
100262227 TGCCAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * *
100262277 TGCCAACGCCATG-CCCCGCACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGACCTCTCATATTGG
* * * * *
100262327 TGTCAACGCCATGTCCCAGACATGGTCTTACATAGTACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T---TGG
* *
100262383 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
100262425 TTACCCAAAT
Statistics
Matches: 162, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 3 0.02
50 117 0.72
51 4 0.02
53 1 0.01
56 37 0.23
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
Found at i:100262629 original size:730 final size:730
Alignment explanation
Indices: 100261229--100262690 Score: 2924
Period size: 730 Copynumber: 2.0 Consensus size: 730
100261219 TCCTTCGTTG
100261229 TTGAAATTTCTTTTCTCAACTGATAACTGAGATACTTTTAATCTTATTAACTCATCTGAACTTGT
1 TTGAAATTTCTTTTCTCAACTGATAACTGAGATACTTTTAATCTTATTAACTCATCTGAACTTGT
100261294 CTATTAGGCTTTTACCTGAACTTTCATGTAACATCATCTATTTATTTACCCGTTGAATCACTTGG
66 CTATTAGGCTTTTACCTGAACTTTCATGTAACATCATCTATTTATTTACCCGTTGAATCACTTGG
100261359 AATACTAAGGATACTCGGGTCTCTTGTCTGAATATAACATGCCAAAGCTATGTCCCATACATAGT
131 AATACTAAGGATACTCGGGTCTCTTGTCTGAATATAACATGCCAAAGCTATGTCCCATACATAGT
100261424 CTTACATGGGATGTTTCTTGTACTGCCAATGTCATATCCCAGATATGGTCTTACATGGGAACTCT
196 CTTACATGGGATGTTTCTTGTACTGCCAATGTCATATCCCAGATATGGTCTTACATGGGAACTCT
100261489 CATATGGGTGCCAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTCTTGGTGCCAAC
261 CATATGGGTGCCAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTCTTGGTGCCAAC
100261554 GCCATGCCCCGCACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCCCAGACA
326 GCCATGCCCCGCACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCCCAGACA
100261619 TGGTCTTACATAGTACCTCTCATAATCTCAATGATGCCAATGCCATGTCCTAGACATGGTCTTAC
391 TGGTCTTACATAGTACCTCTCATAATCTCAATGATGCCAATGCCATGTCCTAGACATGGTCTTAC
100261684 ATGGGATCTCTTTACCCAAATGTCATGACATTTGTATCCAATACATTCCTCATGTTTCAACGGGG
456 ATGGGATCTCTTTACCCAAATGTCATGACATTTGTATCCAATACATTCCTCATGTTTCAACGGGG
100261749 CCTTTTAACACTAATTCTCTGTCATCTCATACTTGAGTTAGCATTAGATATTTTCATGAAATAAA
521 CCTTTTAACACTAATTCTCTGTCATCTCATACTTGAGTTAGCATTAGATATTTTCATGAAATAAA
100261814 TACATAATTTCTGAAAAATAATAGCATTAATAATAATTATCAAAATATTGCATTTATTTACCGTA
586 TACATAATTTCTGAAAAATAATAGCATTAATAATAATTATCAAAATATTGCATTTATTTACCGTA
100261879 AACTTACCTCGGTACAAAATATGATCAAATCTAGGACTTTAGTCCTCAACCTTTTTCTTTCCCCG
651 AACTTACCTCGGTACAAAATATGATCAAATCTAGGACTTTAGTCCTCAACCTTTTTCTTTCCCCG
100261944 GTCTAACTCTGAATT
716 GTCTAACTCTGAATT
100261959 TTGAAATTTCTTTTCTCAACTGATAACTGAGATACTTTTAATCTTATTAACTCATCTGAACTTGT
1 TTGAAATTTCTTTTCTCAACTGATAACTGAGATACTTTTAATCTTATTAACTCATCTGAACTTGT
100262024 CTATTAGGCTTTTACCTGAACTTTCATGTAACATCATCTATTTATTTACCCGTTGAATCACTTGG
66 CTATTAGGCTTTTACCTGAACTTTCATGTAACATCATCTATTTATTTACCCGTTGAATCACTTGG
100262089 AATACTAAGGATACTCGGGTCTCTTGTCTGAATATAACATGCCAAAGCTATGTCCCATACATAGT
131 AATACTAAGGATACTCGGGTCTCTTGTCTGAATATAACATGCCAAAGCTATGTCCCATACATAGT
100262154 CTTACATGGGATGTTTCTTGTACTGCCAATGTCATATCCCAGATATGGTCTTACATGGGAACTCT
196 CTTACATGGGATGTTTCTTGTACTGCCAATGTCATATCCCAGATATGGTCTTACATGGGAACTCT
100262219 CATATGGGTGCCAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTCTTGGTGCCAAC
261 CATATGGGTGCCAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTCTTGGTGCCAAC
100262284 GCCATGCCCCGCACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCCCAGACA
326 GCCATGCCCCGCACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCCCAGACA
100262349 TGGTCTTACATAGTACCTCTCATAATCTCAATGATGCCAATGCCATGTCCTAGACATGGTCTTAC
391 TGGTCTTACATAGTACCTCTCATAATCTCAATGATGCCAATGCCATGTCCTAGACATGGTCTTAC
100262414 ATGGGATCTCTTTACCCAAATGTCATGACATTTGTATCCAATACATTCCTCATGTTTCAACGGGG
456 ATGGGATCTCTTTACCCAAATGTCATGACATTTGTATCCAATACATTCCTCATGTTTCAACGGGG
100262479 CCTTTTAACACTAATTCTCTGTCATCTCATACTTGAGTTAGCATTAGATATTTTCATGAAATAAA
521 CCTTTTAACACTAATTCTCTGTCATCTCATACTTGAGTTAGCATTAGATATTTTCATGAAATAAA
100262544 TACATAATTTCTGAAAAATAATAGCATTAATAATAATTATCAAAATATTGCATTTATTTACCGTA
586 TACATAATTTCTGAAAAATAATAGCATTAATAATAATTATCAAAATATTGCATTTATTTACCGTA
100262609 AACTTACCTCGGTACAAAATATGATCAAATCTAGGACTTTAGTCCTCAACCTTTTTCTTTCCCCG
651 AACTTACCTCGGTACAAAATATGATCAAATCTAGGACTTTAGTCCTCAACCTTTTTCTTTCCCCG
100262674 GTCTAACTCTGAATT
716 GTCTAACTCTGAATT
100262689 TT
1 TT
100262691 TTCTTCTTGA
Statistics
Matches: 732, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
730 732 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (730 bp):
TTGAAATTTCTTTTCTCAACTGATAACTGAGATACTTTTAATCTTATTAACTCATCTGAACTTGT
CTATTAGGCTTTTACCTGAACTTTCATGTAACATCATCTATTTATTTACCCGTTGAATCACTTGG
AATACTAAGGATACTCGGGTCTCTTGTCTGAATATAACATGCCAAAGCTATGTCCCATACATAGT
CTTACATGGGATGTTTCTTGTACTGCCAATGTCATATCCCAGATATGGTCTTACATGGGAACTCT
CATATGGGTGCCAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTCTTGGTGCCAAC
GCCATGCCCCGCACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCCCAGACA
TGGTCTTACATAGTACCTCTCATAATCTCAATGATGCCAATGCCATGTCCTAGACATGGTCTTAC
ATGGGATCTCTTTACCCAAATGTCATGACATTTGTATCCAATACATTCCTCATGTTTCAACGGGG
CCTTTTAACACTAATTCTCTGTCATCTCATACTTGAGTTAGCATTAGATATTTTCATGAAATAAA
TACATAATTTCTGAAAAATAATAGCATTAATAATAATTATCAAAATATTGCATTTATTTACCGTA
AACTTACCTCGGTACAAAATATGATCAAATCTAGGACTTTAGTCCTCAACCTTTTTCTTTCCCCG
GTCTAACTCTGAATT
Found at i:100263616 original size:266 final size:266
Alignment explanation
Indices: 100263142--100263673 Score: 1037
Period size: 266 Copynumber: 2.0 Consensus size: 266
100263132 AAATAACATT
100263142 AAAAACGGGGCTAGAACAGACTTATAATCGAGCTTGGAAGCTTGGAAAACCCTATCCATGGTTTC
1 AAAAACGGGGCTAGAACAGACTTATAATCGAGCTTGGAAGCTTGGAAAACCCTATCCATGGTTTC
100263207 CCATTGTGAAACTCGGCCATGAGGTTGAAGGTGGACAAAAATTGGCTTTTAATTTTGTTTTTAAT
66 CCATTGTGAAACTCGGCCATGAGGTTGAAGGTGGACAAAAATTGGCTTTTAATTTTGTTTTTAAT
* *
100263272 TCATTTTAATAACTAAATGACCAAAATGCCCTTAATGAAAAACTTTGGAAACATGCCTAACCATG
131 TCATTTTAATAACTAAATGACCAAAATACCCTTAATGAAAAACTCTGGAAACATGCCTAACCATG
100263337 TCCATTTTTGTCTACCAACTTAACCAATGGTCTAATTACCATATAAGGACCTCCAATTTAAAATT
196 TCCATTTTTGTCTACCAACTTAACCAATGGTCTAATTACCATATAAGGACCTCCAATTTAAAATT
100263402 TCATAA
261 TCATAA
100263408 AAAAACGGGGCTAGAACAGACTTATAATCGAGCTTGGAAGCTTGGAAAACCCTATCCATGGTTTC
1 AAAAACGGGGCTAGAACAGACTTATAATCGAGCTTGGAAGCTTGGAAAACCCTATCCATGGTTTC
100263473 CCATTGTGAAACTCGGCCATGAGGTTGAAGGTGGACAAAAATTGGCTTTTAATTTTGTTTTTAAT
66 CCATTGTGAAACTCGGCCATGAGGTTGAAGGTGGACAAAAATTGGCTTTTAATTTTGTTTTTAAT
*
100263538 TCATTTTAATAACTAAATGACCAAACTACCCTTAATGAAAAACTCTGGAAACATGCCTAACCATG
131 TCATTTTAATAACTAAATGACCAAAATACCCTTAATGAAAAACTCTGGAAACATGCCTAACCATG
100263603 TCCATTTTTGTCTACCAACTTAACCAATGGTCTAATTACCATATAAGGACCTCCAATTTAAAATT
196 TCCATTTTTGTCTACCAACTTAACCAATGGTCTAATTACCATATAAGGACCTCCAATTTAAAATT
100263668 TCATAA
261 TCATAA
100263674 GAATTGGTCT
Statistics
Matches: 263, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
266 263 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (266 bp):
AAAAACGGGGCTAGAACAGACTTATAATCGAGCTTGGAAGCTTGGAAAACCCTATCCATGGTTTC
CCATTGTGAAACTCGGCCATGAGGTTGAAGGTGGACAAAAATTGGCTTTTAATTTTGTTTTTAAT
TCATTTTAATAACTAAATGACCAAAATACCCTTAATGAAAAACTCTGGAAACATGCCTAACCATG
TCCATTTTTGTCTACCAACTTAACCAATGGTCTAATTACCATATAAGGACCTCCAATTTAAAATT
TCATAA
Found at i:100264731 original size:22 final size:19
Alignment explanation
Indices: 100264700--100264746 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
100264690 AAAGATGATA
100264700 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
100264723 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
100264742 ATTAT
1 ATTAT
100264747 CAGTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:100264742 original size:16 final size:15
Alignment explanation
Indices: 100264702--100264743 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
100264692 AGATGATAAT
100264702 TATTAATATATAATTA
1 TATTAAT-TATAATTA
100264718 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
100264734 TATTAATTAT
1 TATTAATTAT
100264744 TATCAGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:100283878 original size:46 final size:46
Alignment explanation
Indices: 100283825--100283918 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
100283815 CAAAGAAAAG
*
100283825 ACCTCGACCCACTATCAA-GAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATG-ATGATAAGAACCTTGGTATATGATGA
100283871 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
100283917 AC
1 AC
100283919 GCCACACTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
Found at i:100286644 original size:19 final size:18
Alignment explanation
Indices: 100286608--100286647 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
100286598 TTTCCACTCG
*
100286608 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
100286626 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
100286645 TTT
1 TTT
100286648 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:100287758 original size:14 final size:14
Alignment explanation
Indices: 100287708--100287757 Score: 93
Period size: 14 Copynumber: 3.6 Consensus size: 14
100287698 ACTAGCTCTC
100287708 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
100287722 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
100287736 TTTTTTTTTCA-AA
1 TTTTTTTTTCACAA
100287749 TTTTTTTTT
1 TTTTTTTTT
100287758 TTCACAACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 11 0.31
14 25 0.69
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTTTTTCACAA
Found at i:100288205 original size:46 final size:46
Alignment explanation
Indices: 100288152--100288245 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
100288142 CAAAGAAAAG
*
100288152 ACCTCGACCCACTATCAA-GAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATG-ATGATAAGAACCTTGGTATATGATGA
100288198 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
100288244 AC
1 AC
100288246 GCCACACTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
Found at i:100297096 original size:20 final size:21
Alignment explanation
Indices: 100297071--100297109 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
100297061 AAGGGAGTAG
100297071 TCTTTCACTTGA-TTAAAAAA
1 TCTTTCACTTGAGTTAAAAAA
100297091 TCTTTCACTTGAGTTAAAA
1 TCTTTCACTTGAGTTAAAA
100297110 TTGTTTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (21 bp):
TCTTTCACTTGAGTTAAAAAA
Found at i:100297510 original size:18 final size:18
Alignment explanation
Indices: 100297484--100297518 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
100297474 ATAATTATAG
*
100297484 TATTGAATTAATATTTTA
1 TATTAAATTAATATTTTA
100297502 TATTAAATTAATATTTT
1 TATTAAATTAATATTTT
100297519 TTAAAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TATTAAATTAATATTTTA
Found at i:100298591 original size:15 final size:16
Alignment explanation
Indices: 100298571--100298611 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
100298561 GAATACACAT
100298571 GAATTTATATATAT-A
1 GAATTTATATATATAA
*
100298586 GAATTTAGAT-TATAA
1 GAATTTATATATATAA
*
100298601 AAATTTATATA
1 GAATTTATATA
100298612 AACAAAATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (16 bp):
GAATTTATATATATAA
Found at i:100300584 original size:44 final size:44
Alignment explanation
Indices: 100300518--100300637 Score: 138
Period size: 44 Copynumber: 2.7 Consensus size: 44
100300508 GGATTTAATT
* *
100300518 TGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCAT-CTTCAGTC
1 TGCTCCACAGCAACTTCAGGGAGATAAGA-CTTCCATACTT-AGTC
* *
100300563 TGC-CTCACAGCAACTTC-GGGAGGATAAGACTTGCTTACTTAGTC
1 TGCTC-CACAGCAACTTCAGGGA-GATAAGACTTCCATACTTAGTC
*
100300607 TGCTCCACTGCAACTTCAGGGAGATAAGACT
1 TGCTCCACAGCAACTTCAGGGAGATAAGACT
100300638 AGATGCGATC
Statistics
Matches: 65, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
44 36 0.55
45 29 0.45
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (44 bp):
TGCTCCACAGCAACTTCAGGGAGATAAGACTTCCATACTTAGTC
Found at i:100300613 original size:89 final size:88
Alignment explanation
Indices: 100300518--100300981 Score: 384
Period size: 89 Copynumber: 5.3 Consensus size: 88
100300508 GGATTTAATT
* * * *
100300518 TGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTCAGTCTGCCTCACAGCAACTTCGGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTC-AG
100300583 AGGATAAGACTTGCTTACTTAGTC
65 AGGATAAGACTTGCTTACTTAGTC
* * * * *
100300607 TGCTCCACTGCAACTTCAGGGAGATAAGACTAG--A--TGC-GATCTG-CTCTCTGCAACTTCAA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAG-TCTGCCTCACTGCAACTTCAG
** *
100300666 AGAGATAAGATCCAAAG-TT-C-TAATC
65 AG-GATAAGA--C-TTGCTTACTTAGTC
* * * ***
100300691 CGCTCCACTGCAACTTCAGGGAGATACGGTTTGCAATCTTCAGTCTGCCTCACTATGACTTCAAG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTC-AG
100300756 AGGATAAGACTTGCTTACTTAGTC
65 AGGATAAGACTTGCTTACTTAGTC
* * * * * *** * *
100300780 TGCTCCACTGTAACTTTAGGGAGACAAGACTAG--AT-GGGA-TCT-ACTCTCTGCAACTTCAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTCAGA
** * *
100300840 GAGATAAGATCCAAGGTT--TTAATC
66 G-GATAAGA--CTTGCTTACTTAGTC
* * *
100300864 CGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGTTTGCCTCACTGCAACTTTAGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTCA-G
*
100300929 AGGATAAAACTTGCTTACTTAGTC
65 AGGATAAGACTTGCTTACTTAGTC
*
100300953 TACTCCACTGCAACTTCAGGGAGATAAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA
100300982 CTAGATGGGA
Statistics
Matches: 284, Mismatches: 65, Indels: 52
0.71 0.16 0.13
Matches are distributed among these distances:
83 6 0.02
84 101 0.36
85 10 0.04
86 12 0.04
87 12 0.04
88 9 0.03
89 128 0.45
90 6 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (88 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTCAGA
GGATAAGACTTGCTTACTTAGTC
Found at i:100300705 original size:84 final size:84
Alignment explanation
Indices: 100300608--100301062 Score: 336
Period size: 84 Copynumber: 5.3 Consensus size: 84
100300598 TACTTAGTCT
100300608 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
*
100300673 AGATCCAAAGTTCTAATCC
66 AGATCCAATGTTCTAATCC
* ** * * * ***
100300692 GCTCCACTGCAACTTCAGGGAGATACGGTTTGCAAT-CTTCAGTCTGCCTCACTATGACTTC-AA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAG--ATGC--GA-TCTG-CTCTCTGCAACTTCAAA
* * *
100300755 GAGGATAAGA--C-TTGCTTACTTAGTCT
60 GA-GATAAGATCCAATG-TT-C-TAATCC
* * * * * *
100300781 GCTCCACTGTAACTTTAGGGAGACAAGACTAGATGGGATCTACTCTCTGCAACTTCAGAGAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
* *
100300846 AGATCCAAGGTTTTAATCC
66 AGATCCAATGTTCTAATCC
* * * * * * *
100300865 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCAAT-CTTCAGTTTGCCTCACTGCAACTT-TAG
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAG--ATGC--GA-TCTG-CTCTCTGCAACTTCAAA
* * * *
100300928 GAGGATAA-A-AC-TTGCTTACTTAGTCT
60 GA-GATAAGATCCAATG-TT-C-TAATCC
* * *
100300954 ACTCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCTGCTCTCTGCAACTTCAGAGAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
*
100301019 AGATCCAATGTTTTAATCC
66 AGATCCAATGTTCTAATCC
100301038 GCTCCACTGCAACTTCAGGGAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
100301063 GGATTATCGG
Statistics
Matches: 273, Mismatches: 68, Indels: 60
0.68 0.17 0.15
Matches are distributed among these distances:
84 121 0.44
85 13 0.05
86 14 0.05
87 15 0.05
88 14 0.05
89 96 0.35
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (84 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
AGATCCAATGTTCTAATCC
Found at i:100300877 original size:44 final size:43
Alignment explanation
Indices: 100300827--100301108 Score: 150
Period size: 44 Copynumber: 6.5 Consensus size: 43
100300817 GATCTACTCT
*
100300827 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGGGAGATAAGAT-CAAGGTTTTAATCCGCTCCA
* * **
100300871 CTGCAACTTCAGGGAGATAAGATTTGCAA--TCTTCAGTTTGC-CTCA
1 CTGCAACTTCAGGGAGATAAGA--T-CAAGGT-TTTAATCCGCTC-CA
* * ** * * **
100300916 CTGCAACTTTA-GGAGGATAA-AACTTGCTTACTTAGTCTACTCCA
1 CTGCAACTTCAGGGA-GATAAGATCAAGGTT--TTAATCCGCTCCA
* * *** * *
100300960 CTGCAACTTCAGGGAGATAAGA-CTA-GATGGGATCTGCT-CT
1 CTGCAACTTCAGGGAGATAAGATCAAGGTTTTAATCCGCTCCA
* *
100301000 CTGCAACTTCAGAGAGATAAGATCCAATGTTTTAATCCGCTCCA
1 CTGCAACTTCAGGGAGATAAGAT-CAAGGTTTTAATCCGCTCCA
* * * *
100301044 CTGCAACTTCAGGGAGATAGGATTATCGGTTTTAA-CCTGCTCTA
1 CTGCAACTTCAGGGAGATAAGATCA-AGGTTTTAATCC-GCTCCA
*
100301088 CTGCAACTTTAGGGAGATAAG
1 CTGCAACTTCAGGGAGATAAG
100301109 GTTTGCAATC
Statistics
Matches: 181, Mismatches: 39, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
40 22 0.12
41 6 0.03
42 3 0.02
43 13 0.07
44 105 0.58
45 28 0.15
46 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (43 bp):
CTGCAACTTCAGGGAGATAAGATCAAGGTTTTAATCCGCTCCA
Found at i:100301145 original size:173 final size:173
Alignment explanation
Indices: 100300519--100301067 Score: 866
Period size: 173 Copynumber: 3.2 Consensus size: 173
100300509 GATTTAATTT
* * * * **
100300519 GCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTCAGTCTGCCTCACAGCAACTTCGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTTAGGA
*
100300584 GGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCT
66 GGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCT
* *
100300649 GCTCTCTGCAACTTCAAAGAGATAAGATCCAAAGTTCTAATCC
131 GCTCTCTGCAACTTCAGAGAGATAAGATCCAAAGTTTTAATCC
*** * *
100300692 GCTCCACTGCAACTTCAGGGAGATACGG-TTTGCAATCTTCAGTCTGCCTCACTATGACTTCAAG
1 GCTCCACTGCAACTTCAGGGAGATA-GGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTTAGG
* * *
100300756 AGGATAAGACTTGCTTACTTAGTCTGCTCCACTGTAACTTTAGGGAGACAAGACTAGATGGGATC
65 AGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATC
* *
100300821 TACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCC
130 TGCTCTCTGCAACTTCAGAGAGATAAGATCCAAAGTTTTAATCC
* *
100300865 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCAATCTTCAGTTTGCCTCACTGCAACTTTAGGA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTTAGGA
* *
100300930 GGATAAAACTTGCTTACTTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCT
66 GGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCT
*
100300995 GCTCTCTGCAACTTCAGAGAGATAAGATCCAATGTTTTAATCC
131 GCTCTCTGCAACTTCAGAGAGATAAGATCCAAAGTTTTAATCC
100301038 GCTCCACTGCAACTTCAGGGAGATAGGATT
1 GCTCCACTGCAACTTCAGGGAGATAGGATT
100301068 ATCGGTTTTA
Statistics
Matches: 342, Mismatches: 32, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
172 1 0.00
173 340 0.99
174 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (173 bp):
GCTCCACTGCAACTTCAGGGAGATAGGATTTGCAATCTTCAGTCTGCCTCACTGCAACTTTAGGA
GGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCT
GCTCTCTGCAACTTCAGAGAGATAAGATCCAAAGTTTTAATCC
Found at i:100301280 original size:217 final size:217
Alignment explanation
Indices: 100300827--100301286 Score: 717
Period size: 217 Copynumber: 2.1 Consensus size: 217
100300817 GATCTACTCT
* * * *
100300827 CTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAA
1 CTGCAACTTCAGGGAGATAGGAT-TATCGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAA
* * *
100300891 GATTTGCAATCTTCAGTTTGCCTCACTGCAACTTTAGGAGGATAAAACTTGCTTACTTAGTCTAC
65 GATTTGCAATCTTCAGTCTGCCTCACTGAAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTAC
* *
100300956 TCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAG
130 TCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCTGCTCTCTACAACTTCAGAAAGATAAG
* *
100301021 ATCCAATGTTTTAATCCGCTCCA
195 ATCCAATGGTTTAATCCACTCCA
* *
100301044 CTGCAACTTCAGGGAGATAGGATTATCGGTTTTAA-CCTGCTCTACTGCAACTTTAGGGAGATAA
1 CTGCAACTTCAGGGAGATAGGATTATCGGTTTTAATCC-GCTCCACTGCAACTTCAGGGAGATAA
* **
100301108 GGTTTGCAATCTTCAGTCTGCCTCACTGAAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTGT
65 GATTTGCAATCTTCAGTCTGCCTCACTGAAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTAC
* *
100301173 TCCCCTGCAACTTCAGGGAGATAAGACTAGATGGGATCTGCTCTCTACAACTTTAGAAAGATAAG
130 TCCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCTGCTCTCTACAACTTCAGAAAGATAAG
100301238 ATCCAATGGTTTAATCCACTCCA
195 ATCCAATGGTTTAATCCACTCCA
*
100301261 CTGCGACTTCAGGGAGATAGGATTAT
1 CTGCAACTTCAGGGAGATAGGATTAT
100301287 TGGCCATGGA
Statistics
Matches: 222, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
216 3 0.01
217 219 0.99
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (217 bp):
CTGCAACTTCAGGGAGATAGGATTATCGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAG
ATTTGCAATCTTCAGTCTGCCTCACTGAAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTACT
CCACTGCAACTTCAGGGAGATAAGACTAGATGGGATCTGCTCTCTACAACTTCAGAAAGATAAGA
TCCAATGGTTTAATCCACTCCA
Found at i:100316209 original size:27 final size:27
Alignment explanation
Indices: 100316178--100316230 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
100316168 GGAGGTGGTG
* *
100316178 CCTATCTGGTAGGCGCTATTGGTGACC
1 CCTATCTGGTAGGCGCCACTGGTGACC
100316205 CCTATCTGGTAGGCGCCACTGGTGAC
1 CCTATCTGGTAGGCGCCACTGGTGAC
100316231 TAGAGGTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.15, C:0.28, G:0.30, T:0.26
Consensus pattern (27 bp):
CCTATCTGGTAGGCGCCACTGGTGACC
Found at i:100316447 original size:11 final size:11
Alignment explanation
Indices: 100316433--100316458 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
100316423 TTTTTTTTAA
100316433 TTTTAAAATAT
1 TTTTAAAATAT
100316444 TTTTAAAATAT
1 TTTTAAAATAT
100316455 TTTT
1 TTTT
100316459 TTATTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:100316478 original size:20 final size:19
Alignment explanation
Indices: 100316441--100316479 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
100316431 AATTTTAAAA
*
100316441 TATTTTTAAAATATTTTTT
1 TATTTTTAAAATAATTTTT
100316460 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAAT-AATTTTT
100316480 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTTTTAAAATAATTTTT
Found at i:100320010 original size:44 final size:42
Alignment explanation
Indices: 100319960--100320047 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 42
100319950 AATTATAATT
*
100319960 TTAAATTCTAATTATTTTTAAATGTGTAATTACCACAACTTCTA
1 TTAAATTCTAATTATTTTTAAA--TATAATTACCACAACTTCTA
* * *
100320004 TTAAATTTTAATTATTTTTAAATATATTTATCACAACTTCTA
1 TTAAATTCTAATTATTTTTAAATATAATTACCACAACTTCTA
100320046 TT
1 TT
100320048 TTATTTCAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 19 0.47
44 21 0.52
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.50
Consensus pattern (42 bp):
TTAAATTCTAATTATTTTTAAATATAATTACCACAACTTCTA
Found at i:100335906 original size:25 final size:25
Alignment explanation
Indices: 100335878--100335932 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
100335868 AAGCTCTTTT
*
100335878 GAGCTAAATAAT-GGTAAGCTCATAC
1 GAGCTAAAT-ATCGGTAAGCTCATAA
* *
100335903 GAGCTAAGTATCGTTAAGCTCATAA
1 GAGCTAAATATCGGTAAGCTCATAA
100335928 GAGCT
1 GAGCT
100335933 GGAATCGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (25 bp):
GAGCTAAATATCGGTAAGCTCATAA
Found at i:100338500 original size:19 final size:19
Alignment explanation
Indices: 100338473--100338511 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
100338463 AAAGGAAGAA
*
100338473 GAGAGAGGTAAATTTCATG
1 GAGAAAGGTAAATTTCATG
*
100338492 GAGAAAGGTAAATTTTATG
1 GAGAAAGGTAAATTTCATG
100338511 G
1 G
100338512 TTGATTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.31, T:0.28
Consensus pattern (19 bp):
GAGAAAGGTAAATTTCATG
Found at i:100338648 original size:33 final size:33
Alignment explanation
Indices: 100338606--100338672 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
100338596 TTTTTTAAGT
* *
100338606 CTTAAATTGAAAATGAATTTTATACAGGGTGAG
1 CTTAAATTGAAAATGAATTTTATAAAGGGGGAG
* *
100338639 CTTATATTGAAAATGACTTTTATAAAGGGGGAG
1 CTTAAATTGAAAATGAATTTTATAAAGGGGGAG
100338672 C
1 C
100338673 AATTTATTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.33
Consensus pattern (33 bp):
CTTAAATTGAAAATGAATTTTATAAAGGGGGAG
Done.