Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 306 of 310
Found at i:100875508 original size:20 final size:19
Alignment explanation
Indices: 100875472--100875600 Score: 114
Period size: 20 Copynumber: 6.5 Consensus size: 19
100875462 CAATTATTTA
*
100875472 TGTTTGCAAATCTGTGCCCC
1 TGTTTGCACATC-GTGCCCC
* * *
100875492 TGCTTGCATATCGGTGCCCT
1 TGTTTGCACATC-GTGCCCC
100875512 TGTTTGCACATTCGTGCCCC
1 TGTTTGCACA-TCGTGCCCC
* *
100875532 TATTTTCACATCAGTGCCCC
1 TGTTTGCACATC-GTGCCCC
**
100875552 TACTTGCACATTCGTGCCCC
1 TGTTTGCACA-TCGTGCCCC
* *
100875572 TGTTTGCACATTTGTGCGCC
1 TGTTTGCACA-TCGTGCCCC
100875592 TGTTTGCAC
1 TGTTTGCAC
100875601 TTTGGTGCCA
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
19 2 0.02
20 85 0.93
21 4 0.04
ACGTcount: A:0.13, C:0.32, G:0.19, T:0.36
Consensus pattern (19 bp):
TGTTTGCACATCGTGCCCC
Found at i:100875609 original size:60 final size:60
Alignment explanation
Indices: 100875474--100875600 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
100875464 ATTATTTATG
* * * * *
100875474 TTTGCAAATCTGTGCCCCTGCTTGCATATCGGTGCCCTTGTTTGCACATTCGTGCCCCTA
1 TTTGCACATCAGTGCCCCTACTTGCACATCGGTGCCCCTGTTTGCACATTCGTGCCCCTA
* * * *
100875534 TTTTCACATCAGTGCCCCTACTTGCACATTC-GTGCCCCTGTTTGCACATTTGTGCGCCTG
1 TTTGCACATCAGTGCCCCTACTTGCACA-TCGGTGCCCCTGTTTGCACATTCGTGCCCCTA
100875594 TTTGCAC
1 TTTGCAC
100875601 TTTGGTGCCA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 54 0.96
61 2 0.04
ACGTcount: A:0.13, C:0.32, G:0.19, T:0.35
Consensus pattern (60 bp):
TTTGCACATCAGTGCCCCTACTTGCACATCGGTGCCCCTGTTTGCACATTCGTGCCCCTA
Found at i:100878915 original size:21 final size:21
Alignment explanation
Indices: 100878890--100878940 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
100878880 TTTTATTGGT
100878890 GCCAGAAATAGTGGTTTTAGG
1 GCCAGAAATAGTGGTTTTAGG
100878911 GCCAGAAATAGTGGTTTTAGG
1 GCCAGAAATAGTGGTTTTAGG
* *
100878932 ACCACAAAT
1 GCCAGAAAT
100878941 CCGACGAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.25
Consensus pattern (21 bp):
GCCAGAAATAGTGGTTTTAGG
Found at i:100884334 original size:37 final size:37
Alignment explanation
Indices: 100884275--100884420 Score: 213
Period size: 37 Copynumber: 3.9 Consensus size: 37
100884265 AGCTCAGACG
* *
100884275 AAATCTCCACATGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACA-CATAGTCATCGGGTCTTACCCGGACA
*
100884312 AAATCTCCACACATAGTCATCGGGTCTTACTCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
100884349 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
100884386 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
100884421 ATATATTTCC
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 1 0.01
37 101 0.99
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:100884371 original size:74 final size:74
Alignment explanation
Indices: 100884276--100884420 Score: 236
Period size: 74 Copynumber: 2.0 Consensus size: 74
100884266 GCTCAGACGA
* *
100884276 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTTA
*
100884341 CTCGGACAT
66 CCCGGACAT
* * *
100884350 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTTA
100884415 CCCGGA
66 CCCGGA
100884421 ATATATTTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (74 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTTA
CCCGGACAT
Found at i:100884868 original size:53 final size:47
Alignment explanation
Indices: 100884628--100885012 Score: 563
Period size: 47 Copynumber: 8.1 Consensus size: 47
100884618 ACACGTTTCG
* * * * **
100884628 CATTAGCCATTCGACCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
100884675 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
100884722 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
100884769 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
100884816 CATTGGCCATTCGGCCTTATCACGAATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCAC------ACATACGCATGTTCACATTCATCA
*
100884869 CATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
100884916 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
100884963 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
100885010 CAT
1 CAT
100885013 AAAATCCTAA
Statistics
Matches: 311, Mismatches: 21, Indels: 12
0.90 0.06 0.03
Matches are distributed among these distances:
47 270 0.87
53 41 0.13
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:100884899 original size:147 final size:143
Alignment explanation
Indices: 100884628--100884990 Score: 559
Period size: 147 Copynumber: 2.5 Consensus size: 143
100884618 ACACGTTTCG
* * * * **
100884628 CATTAGCCATTCGACCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
100884693 AT--CTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATG
66 ATCACTCATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACGCATG
100884756 TTCACATCCATCA
131 TTCACATCCATCA
*
100884769 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
100884834 ATCACGAATATATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACG
66 ATCAC---T-CATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACG
*
100884899 CATGTTCACATTCATCA
127 CATGTTCACATCCATCA
100884916 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
100884981 ATCACACATA
66 ATCACTCATA
100884991 CGCATGTTCA
Statistics
Matches: 201, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
141 60 0.30
143 4 0.02
146 1 0.00
147 136 0.68
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (143 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACTCATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACGCATG
TTCACATCCATCA
Found at i:100884990 original size:194 final size:194
Alignment explanation
Indices: 100884651--100885012 Score: 661
Period size: 194 Copynumber: 1.9 Consensus size: 194
100884641 ACCTTACCAC
* * * * * *
100884651 ATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACAT
100884716 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTC
66 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTC
100884781 GGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACGAATAT
131 GGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACGAATAT
100884845 ATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACAT
*
100884910 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
66 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTC
100884975 GGCCTTATCACACATACGCATGTTCACATCCATCACAT
131 GGCCTTATCACACATACGCATGTTCACATCCATCACAT
100885013 AAAATCCTAA
Statistics
Matches: 161, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
194 161 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (194 bp):
ATATATACAGGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACAT
TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTC
GGCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACGAATAT
Found at i:100892125 original size:15 final size:14
Alignment explanation
Indices: 100892073--100892132 Score: 57
Period size: 15 Copynumber: 4.1 Consensus size: 14
100892063 AGAATTCAAT
*
100892073 ATAAGGAAATCCATA
1 ATAAAGAAATCCA-A
* *
100892088 ACAGAGAAATCCAGA
1 ATAAAGAAATCCA-A
*
100892103 ATATAGAAATCCAA
1 ATAAAGAAATCCAA
100892117 CATAAAGAAATCCAA
1 -ATAAAGAAATCCAA
100892132 A
1 A
100892133 ACAAGAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
14 2 0.05
15 35 0.95
ACGTcount: A:0.57, C:0.17, G:0.12, T:0.15
Consensus pattern (14 bp):
ATAAAGAAATCCAA
Found at i:100894194 original size:53 final size:53
Alignment explanation
Indices: 100894012--100894218 Score: 207
Period size: 53 Copynumber: 3.8 Consensus size: 53
100894002 ATTAGGGTTT
* * * * *
100894012 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
100894066 AAGAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TCATAAGGC
* * * * *
100894121 AAAGATCCCATGTAAGACCATACCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
100894174 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
100894219 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 46 0.38
54 36 0.30
55 39 0.32
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:100903932 original size:27 final size:27
Alignment explanation
Indices: 100903902--100903955 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
100903892 ATACAACCTG
100903902 ACTATAATCCCATAGACATTAAAATAA
1 ACTATAATCCCATAGACATTAAAATAA
100903929 ACTATAATCCCATAGACATTAAAATAA
1 ACTATAATCCCATAGACATTAAAATAA
100903956 CAAAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.19, G:0.04, T:0.26
Consensus pattern (27 bp):
ACTATAATCCCATAGACATTAAAATAA
Found at i:100906648 original size:20 final size:20
Alignment explanation
Indices: 100906623--100906728 Score: 65
Period size: 20 Copynumber: 5.3 Consensus size: 20
100906613 TTTATGTTTT
100906623 CACATCGATGCCCCTGCTTG
1 CACATCGATGCCCCTGCTTG
* * **
100906643 CACATCGGTACCCCTATTTG
1 CACATCGATGCCCCTGCTTG
* * *
100906663 CATATATG-TGCCCCTGATTG
1 CACAT-CGATGCCCCTGCTTG
* *
100906683 AACAT--ATGCACCCTTGTTTG
1 CACATCGATGC-CCC-TGCTTG
* *
100906703 CACATCGGTGCCCATGCTTG
1 CACATCGATGCCCCTGCTTG
100906723 CACATC
1 CACATC
100906729 TGTGTCCCTT
Statistics
Matches: 64, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
18 3 0.05
19 3 0.05
20 52 0.81
21 3 0.05
22 3 0.05
ACGTcount: A:0.20, C:0.33, G:0.18, T:0.29
Consensus pattern (20 bp):
CACATCGATGCCCCTGCTTG
Found at i:100906743 original size:20 final size:19
Alignment explanation
Indices: 100906693--100906777 Score: 62
Period size: 20 Copynumber: 4.3 Consensus size: 19
100906683 AACATATGCA
100906693 CCCTTGTTTGCACATCGGTG
1 CCCTT-TTTGCACATCGGTG
** *
100906713 CCCATGCTTGCACATCTGTG
1 CCC-TTTTTGCACATCGGTG
* *
100906733 TCCCTTTTTGCACTTTGGTG
1 -CCCTTTTTGCACATCGGTG
** *
100906753 CCCTTAACTGCACATCTGTG
1 CCCTT-TTTGCACATCGGTG
100906773 CCCTT
1 CCCTT
100906778 ATTTTGCATC
Statistics
Matches: 49, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
19 5 0.10
20 40 0.82
21 4 0.08
ACGTcount: A:0.12, C:0.33, G:0.19, T:0.36
Consensus pattern (19 bp):
CCCTTTTTGCACATCGGTG
Found at i:100906743 original size:40 final size:40
Alignment explanation
Indices: 100906693--100906777 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
100906683 AACATATGCA
*
100906693 CCCTTGTTTGCACATCGGTGCCCAT-GCTTGCACATCTGTG
1 CCCTTGTTTGCACATCGGTGCCCATAAC-TGCACATCTGTG
* * *
100906733 TCCCTT-TTTGCACTTTGGTGCCCTTAACTGCACATCTGTG
1 -CCCTTGTTTGCACATCGGTGCCCATAACTGCACATCTGTG
100906773 CCCTT
1 CCCTT
100906778 ATTTTGCATC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
39 5 0.13
40 28 0.72
41 6 0.15
ACGTcount: A:0.12, C:0.33, G:0.19, T:0.36
Consensus pattern (40 bp):
CCCTTGTTTGCACATCGGTGCCCATAACTGCACATCTGTG
Found at i:100907572 original size:10 final size:10
Alignment explanation
Indices: 100907557--100907619 Score: 60
Period size: 10 Copynumber: 6.3 Consensus size: 10
100907547 ATTTCTTTTT
100907557 TTTTAGTTTG
1 TTTTAGTTTG
*
100907567 TTTTAGTTTT
1 TTTTAGTTTG
100907577 TTTCTAGTTT-
1 TTT-TAGTTTG
*
100907587 ATTTAGTTTG
1 TTTTAGTTTG
100907597 TTTT-GTTTTG
1 TTTTAG-TTTG
100907607 TTTT-GTTTTG
1 TTTTAG-TTTG
100907617 TTT
1 TTT
100907620 GCTTGAGATT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
9 7 0.15
10 34 0.72
11 6 0.13
ACGTcount: A:0.08, C:0.02, G:0.16, T:0.75
Consensus pattern (10 bp):
TTTTAGTTTG
Found at i:100907603 original size:5 final size:5
Alignment explanation
Indices: 100907593--100907619 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
100907583 GTTTATTTAG
100907593 TTTGT TTTGT TTTGT TTTGT TTTGT TT
1 TTTGT TTTGT TTTGT TTTGT TTTGT TT
100907620 GCTTGAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTGT
Found at i:100910955 original size:66 final size:66
Alignment explanation
Indices: 100910845--100910977 Score: 187
Period size: 66 Copynumber: 2.0 Consensus size: 66
100910835 TATTGAAATG
* * *
100910845 TGAGAAATAAATTTGTACTATTGTTTGAGCATTATTCGCCTGTTGT-ACGCTGTGATTGACAGGA
1 TGAGAAATAAATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGA-GCTGTGAGTGACAGGA
100910909 AC
65 AC
** * *
100910911 TGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACTTGTTGTGAGTTGTGAGTGACAGGAA
1 TGAGAAATAAATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTGTGAGTGACAGGAA
100910976 C
66 C
100910977 T
1 T
100910978 TTATTAGTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 58 0.98
67 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (66 bp):
TGAGAAATAAATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTGTGAGTGACAGGAA
C
Found at i:100916040 original size:12 final size:12
Alignment explanation
Indices: 100916018--100916053 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
100916008 AACAAAAAAT
100916018 TGAAGTAAATAAG
1 TGAA-TAAATAAG
100916031 TGAATAAATAAG
1 TGAATAAATAAG
*
100916043 TGAGTAAATAA
1 TGAATAAATAA
100916054 CTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.25
Consensus pattern (12 bp):
TGAATAAATAAG
Found at i:100922024 original size:41 final size:41
Alignment explanation
Indices: 100921967--100922047 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
100921957 CATGGCTATC
*
100921967 CAAAATTTATACAAGTCCAAATGGTCCACGACCCACAACAA
1 CAAAATTTATACAAGTCCAAAGGGTCCACGACCCACAACAA
100922008 CAAAATTTATACAAGTCCAAAGGGTCCACGACCCACAACA
1 CAAAATTTATACAAGTCCAAAGGGTCCACGACCCACAACA
100922048 TACGGGTAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.43, C:0.30, G:0.11, T:0.16
Consensus pattern (41 bp):
CAAAATTTATACAAGTCCAAAGGGTCCACGACCCACAACAA
Found at i:100922589 original size:40 final size:40
Alignment explanation
Indices: 100922545--100922767 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 40
100922535 GCTCCTCGTT
*
100922545 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
100922585 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* *
100922625 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
*
100922665 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* * * * *
100922704 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
100922745 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
100922768 ACATCATTCA
Statistics
Matches: 161, Mismatches: 12, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
38 3 0.02
39 44 0.27
40 105 0.65
41 8 0.05
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:100922729 original size:79 final size:80
Alignment explanation
Indices: 100922545--100922768 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
100922535 GCTCCTCGTT
* * *
100922545 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
100922609 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
100922625 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
100922689 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
100922704 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
100922765 CGGA
63 CGGA
100922769 CATCATTCAA
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 12 0.09
79 60 0.47
80 55 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:100929622 original size:19 final size:19
Alignment explanation
Indices: 100929598--100929637 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
100929588 CATATCGGAA
100929598 TCACATATCGATGCCATGG
1 TCACATATCGATGCCATGG
100929617 TCACATATCGATGCCATGG
1 TCACATATCGATGCCATGG
100929636 TC
1 TC
100929638 TTACTCGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (19 bp):
TCACATATCGATGCCATGG
Found at i:100957179 original size:86 final size:90
Alignment explanation
Indices: 100957057--100957230 Score: 205
Period size: 86 Copynumber: 2.0 Consensus size: 90
100957047 TTTTATTAAT
* * * * *
100957057 TCACCGGCATTCAGCCTGCTAGGTTTTAAAAACCCGAAT-TTAT-TCACCGGCATT-TTGCCTGC
1 TCACCGGCATTCAGCCTGCTAGGTCTCAAAAACCCGAATAATATCTCACCAGCATTATAGCCTGC
*
100957119 TAGGCT-CGAGGCCCGAAAAATATC
66 TAGGCTCCAAGGCCCGAAAAATATC
* ** *
100957143 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATAATGTCTCACCAGCATTATAGCCTG
1 TCACCGGCATT-CAGCCTGCTAGGTCTCAAAAACCCGAATAATATCTCACCAGCATTATAGCCTG
*
100957207 CTAGGCTCCAAGGCCCGAATAATA
65 CTAGGCTCCAAGGCCCGAAAAATA
100957231 CTGTACAACA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
86 22 0.31
87 13 0.18
88 10 0.14
89 13 0.18
90 14 0.19
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (90 bp):
TCACCGGCATTCAGCCTGCTAGGTCTCAAAAACCCGAATAATATCTCACCAGCATTATAGCCTGC
TAGGCTCCAAGGCCCGAAAAATATC
Found at i:100957190 original size:45 final size:44
Alignment explanation
Indices: 100957100--100957230 Score: 192
Period size: 45 Copynumber: 3.0 Consensus size: 44
100957090 CCGAATTTAT
* * *
100957100 TCACCGGCATT-TTGCCTGCTAGGCTCGAGGCCCGAAAAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
*
100957143 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
*
100957188 TCACCAGCATTATAGCCTGCTAGGCTCCAAGGCCCGAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
100957231 CTGTACAACA
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
43 11 0.14
44 14 0.18
45 53 0.67
46 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:100960154 original size:35 final size:31
Alignment explanation
Indices: 100960084--100960146 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
100960074 TCTCTACCTT
*
100960084 AAGTAAGTTGCCTATCTTACCCTAAATGTAA
1 AAGTAAGTTACCTATCTTACCCTAAATGTAA
*
100960115 AAGTAAGTTACCTATCTTACCCTATATGTAA
1 AAGTAAGTTACCTATCTTACCCTAAATGTAA
100960146 A
1 A
100960147 CCCAAGTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (31 bp):
AAGTAAGTTACCTATCTTACCCTAAATGTAA
Found at i:100960985 original size:59 final size:59
Alignment explanation
Indices: 100960919--100961045 Score: 222
Period size: 59 Copynumber: 2.2 Consensus size: 59
100960909 AATCACTATG
* *
100960919 AGTAATGTTGTGACAATTACATAATATTCCAAGAAACATTCTCATAGCGGTTCAGTCCA
1 AGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTCATAGCGGTTCAGTCCA
100960978 AGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTCATAGCGGTTCAGTCCA
1 AGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTCATAGCGGTTCAGTCCA
100961037 A-T-ATGTTGT
1 AGTAATGTTGT
100961046 TCTCTAACAC
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
57 7 0.11
58 1 0.02
59 58 0.88
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (59 bp):
AGTAATGTTGTGACAATTACATAATAATCCAAGAAACATACTCATAGCGGTTCAGTCCA
Found at i:100976595 original size:35 final size:35
Alignment explanation
Indices: 100976554--100976623 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
100976544 TGTGAACATT
* *
100976554 AGGACTTGAACTTTGGACCACCAGGATAGCTTAGG
1 AGGACTTGAACCTTCGACCACCAGGATAGCTTAGG
*
100976589 AGGACTTGAACCTTCGACCACTAGGATAGCTTAGG
1 AGGACTTGAACCTTCGACCACCAGGATAGCTTAGG
100976624 CACACTTAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (35 bp):
AGGACTTGAACCTTCGACCACCAGGATAGCTTAGG
Found at i:100979730 original size:27 final size:27
Alignment explanation
Indices: 100979700--100979877 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
100979690 ATATTGAGTC
* * * *
100979700 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
100979727 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
100979754 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
100979782 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
100979809 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
100979836 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
100979863 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
100979878 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:100979839 original size:82 final size:81
Alignment explanation
Indices: 100979721--100979876 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
100979711 TGCTATATAA
* *
100979721 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
100979786 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
100979803 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
100979867 CACTTAGTGC
65 CACTTAGTGC
100979877 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:100986604 original size:25 final size:25
Alignment explanation
Indices: 100986576--100986631 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
100986566 ATTTACTCAA
*
100986576 ATTTGTGGAATGTATGTTTGAGTGC
1 ATTTGTAGAATGTATGTTTGAGTGC
100986601 ATTTGTAGAATGTATGTTTGAGTGC
1 ATTTGTAGAATGTATGTTTGAGTGC
100986626 ATTTGT
1 ATTTGT
100986632 TTTAAAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.21, C:0.04, G:0.29, T:0.46
Consensus pattern (25 bp):
ATTTGTAGAATGTATGTTTGAGTGC
Found at i:100992261 original size:27 final size:27
Alignment explanation
Indices: 100992231--100993207 Score: 1004
Period size: 27 Copynumber: 36.2 Consensus size: 27
100992221 TTTAGTTTAC
* **
100992231 AAAATTACTGAAATACCCTTGGT-TTGT
1 AAAATTACCGAAATACCCTT-GTAGGGT
*
100992258 AAAATTACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992285 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992312 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992339 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992366 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992393 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992420 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992447 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992474 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992501 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992528 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992555 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992582 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992609 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992636 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992663 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992690 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992717 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992744 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992771 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992798 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992825 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992852 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992879 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992906 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100992933 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100992960 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100992987 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100993014 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
100993041 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100993068 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
100993095 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
100993122 AGAATTACTGAAATACCCTTATAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
*
100993149 AGAAA-TACCGAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* *
100993176 AAAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
100993203 AAAAT
1 AAAAT
100993208 CACCATTTTG
Statistics
Matches: 810, Mismatches: 137, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
26 5 0.01
27 803 0.99
28 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:100992368 original size:81 final size:81
Alignment explanation
Indices: 100992233--100993203 Score: 1802
Period size: 81 Copynumber: 12.0 Consensus size: 81
100992223 TAGTTTACAA
* ** * *
100992233 AATTACTGAAATACCCTTGGT-TTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAA
1 AATTACTGAAATACCCTT-ATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAA
100992297 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
100992314 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992379 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992395 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992460 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992476 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992541 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992557 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992622 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992638 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992703 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992719 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992784 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992800 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992865 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992881 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100992946 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100992962 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100993027 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
100993043 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
100993108 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
100993124 AATTACTGAAATACCCTTATAGGGTAGAA-ATACCGAAATACCCCTGTAGGGTAAAATTACCGAG
1 AATTACTGAAATACCCTTATAAGGTAGAATA-ACCAAAATACCCTTGTAGGGTAGAATTACCGAA
* *
100993188 ATACCCTTGTGGGGTA
65 ATACCCCTGTAGGGTA
100993204 AAATCACCAT
Statistics
Matches: 876, Mismatches: 12, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
80 2 0.00
81 874 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (81 bp):
AATTACTGAAATACCCTTATAAGGTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:100993515 original size:21 final size:21
Alignment explanation
Indices: 100993489--100993539 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
100993479 ATTTTGATAT
* *
100993489 ACATGATATGACGTGATATGC
1 ACATGATATGACATGAGATGC
**
100993510 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
100993531 ACATGATAT
1 ACATGATAT
100993540 ACTCATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:100993518 original size:11 final size:11
Alignment explanation
Indices: 100993489--100993553 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 11
100993479 ATTTTGATAT
100993489 ACATGATATG-
1 ACATGATATGC
*
100993499 ACGTGATATGC
1 ACATGATATGC
100993510 ACATGATATG-
1 ACATGATATGC
** *
100993520 TTATGAGATGC
1 ACATGATATGC
*
100993531 ACATGATATAC
1 ACATGATATGC
* *
100993542 TCATTATATGC
1 ACATGATATGC
100993553 A
1 A
100993554 GGGGTTGGGT
Statistics
Matches: 40, Mismatches: 13, Indels: 3
0.71 0.23 0.05
Matches are distributed among these distances:
10 16 0.40
11 24 0.60
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:100993619 original size:25 final size:25
Alignment explanation
Indices: 100993585--100993654 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
100993575 AGGAAGTGCT
*
100993585 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
100993610 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
100993635 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
100993655 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:100993667 original size:24 final size:24
Alignment explanation
Indices: 100993584--100993667 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
100993574 GAGGAAGTGC
*
100993584 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
100993609 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
100993633 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
100993657 TAAAAGAGGCT
1 TAAAAG-GGCT
100993668 AAGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 40 0.75
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:100993678 original size:50 final size:50
Alignment explanation
Indices: 100993585--100993679 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
100993575 AGGAAGTGCT
**
100993585 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAAGCCCCAGTTTATCA
**
100993635 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAAGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAAGCC-CCAGTT
100993680 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAAGCCCCAGTTTATCA
Found at i:100993932 original size:6 final size:6
Alignment explanation
Indices: 100993921--100994007 Score: 79
Period size: 6 Copynumber: 14.3 Consensus size: 6
100993911 TTGCATACAC
* * *
100993921 ATTCTG ATTCTG ATTCTG -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
100993970 ATTCTA ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
100994008 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
5 2 0.03
6 58 0.91
7 3 0.05
8 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:100999643 original size:34 final size:34
Alignment explanation
Indices: 100999574--100999660 Score: 104
Period size: 34 Copynumber: 2.6 Consensus size: 34
100999564 CAGCGCAAAA
* * **
100999574 CAGTGTGGGCCTAAGTCCATATCAGTGGCAATAT
1 CAGTGTGGGCCTTAGCCCATATCAGTAACAATAT
*
100999608 CAGTGTGGGCCTTAGCCCATTAT-AGTAACAGTAT
1 CAGTGTGGGCCTTAGCCCA-TATCAGTAACAATAT
*
100999642 CAGTATGGGCCTTAGCCCA
1 CAGTGTGGGCCTTAGCCCA
100999661 ATTCAATACA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 43 0.93
35 3 0.07
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATATCAGTAACAATAT
Found at i:101007427 original size:34 final size:34
Alignment explanation
Indices: 101007404--101007470 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
101007394 ATATTAGTGG
101007404 CAATATCAGTGTGGGCCTTAGCCCATTACAGTAA
1 CAATATCAGTGTGGGCCTTAGCCCATTACAGTAA
*
101007438 CAGTATCAGTGTGGGCCTTAGCCCAATT-CAGTA
1 CAATATCAGTGTGGGCCTTAGCCC-ATTACAGTA
101007471 CAGTATTAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.90
35 3 0.10
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (34 bp):
CAATATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:101016193 original size:44 final size:44
Alignment explanation
Indices: 101016130--101016218 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
101016120 GACCGTCTAA
*
101016130 GTCAACCAACAACTACTTTATGTTTAAATTTTGTTTCTGATTTT
1 GTCAACCAACAACTACTTTATGTTTAAATTCTGTTTCTGATTTT
101016174 GTCAACCAACAACTACTTTATGTTTAAATTCTGTTTCTGATTTT
1 GTCAACCAACAACTACTTTATGTTTAAATTCTGTTTCTGATTTT
101016218 G
1 G
101016219 ATAAGGTTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (44 bp):
GTCAACCAACAACTACTTTATGTTTAAATTCTGTTTCTGATTTT
Found at i:101019181 original size:47 final size:47
Alignment explanation
Indices: 101019069--101019191 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
101019059 AGGATTCTAT
* * * * * *
101019069 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGAT
1 GTGATGGATGTGAA-AGTGTATATATGTGACAAGGCCGAATGGCCAAC
* * *
101019116 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
*
101019163 GTGATGGATGTGAAAGTGTATAAATGTGA
1 GTGATGGATGTGAAAGTGTATATATGTGA
101019192 TAAGTCCCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.02
47 63 0.98
ACGTcount: A:0.32, C:0.10, G:0.33, T:0.26
Consensus pattern (47 bp):
GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
Found at i:101019385 original size:134 final size:134
Alignment explanation
Indices: 101019145--101019413 Score: 538
Period size: 134 Copynumber: 2.0 Consensus size: 134
101019135 ATATATGTGA
101019145 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATT
1 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATT
101019210 TGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATCAA
66 TGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATCAA
101019275 TGTC
131 TGTC
101019279 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATT
1 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATT
101019344 TGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATCAA
66 TGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATCAA
101019409 TGTC
131 TGTC
101019413 C
1 C
101019414 GTAAGCTTCG
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 135 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (134 bp):
CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATT
TGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATCAA
TGTC
Found at i:101019504 original size:37 final size:37
Alignment explanation
Indices: 101019448--101019526 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
101019438 CCGAGCTCTA
* * *
101019448 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
101019485 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
101019522 AAGAC
1 AAGAC
101019527 TTCGTAATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:101023021 original size:19 final size:19
Alignment explanation
Indices: 101022975--101023022 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
101022965 GTATATATTT
101022975 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
101022993 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
101023012 TAAATTTTATT
1 TAAATTTTATT
101023023 CATATTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:101023102 original size:41 final size:41
Alignment explanation
Indices: 101023046--101023124 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
101023036 TATTTTTATT
101023046 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTCCC
*
101023087 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTATTT
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTT
101023125 TCCCAATTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (41 bp):
TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTCCC
Found at i:101030800 original size:35 final size:35
Alignment explanation
Indices: 101030761--101030930 Score: 184
Period size: 35 Copynumber: 4.9 Consensus size: 35
101030751 AAAGGTGACT
*
101030761 TTAAAAAGGTTGGGATAGATTCGTCTAAGGCAACC
1 TTAAAAAGGTTGGGATAGACTCGTCTAAGGCAACC
* * *
101030796 TTAAAAACGTTGAGATAGACCCGTCTAAGGCAACC
1 TTAAAAAGGTTGGGATAGACTCGTCTAAGGCAACC
* * * *
101030831 TTTAAAAGGCTGAGG-TAGACACGTCTATGGCAACC
1 TTAAAAAGGTTG-GGATAGACTCGTCTAAGGCAACC
*
101030866 TTAAAAAGGTTGGGATAGACAT-ATCTAAGGCAACC
1 TTAAAAAGGTTGGGATAGAC-TCGTCTAAGGCAACC
* * *
101030901 TTAAAAAAGTTGAGATAAACAT-GTCTAAGG
1 TTAAAAAGGTTGGGATAGAC-TCGTCTAAGG
101030931 TAATTTTTTT
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
34 2 0.02
35 110 0.97
36 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.24
Consensus pattern (35 bp):
TTAAAAAGGTTGGGATAGACTCGTCTAAGGCAACC
Found at i:101031533 original size:19 final size:19
Alignment explanation
Indices: 101031509--101031602 Score: 83
Period size: 19 Copynumber: 5.2 Consensus size: 19
101031499 AATCTTTAAG
* *
101031509 GATATGCAATCTCAGGTAT
1 GATATGCAATCTTAGATAT
*
101031528 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
101031547 GATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
101031564 GATATG--AT-AT-GATAT
1 GATATGCAATCTTAGATAT
*
101031579 GATATACAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
101031600 GAT
1 GAT
101031603 TTTATAATCT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
15 10 0.16
16 1 0.02
17 20 0.33
18 1 0.02
19 21 0.34
21 8 0.13
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:101031567 original size:5 final size:5
Alignment explanation
Indices: 101031559--101031583 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
101031549 TATAATCTTA
101031559 GATAT GATAT GATAT GATAT GATAT
1 GATAT GATAT GATAT GATAT GATAT
101031584 ACAATCTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
GATAT
Found at i:101039229 original size:44 final size:44
Alignment explanation
Indices: 101039065--101039528 Score: 240
Period size: 44 Copynumber: 10.6 Consensus size: 44
101039055 ATGTAGATCA
*
101039065 AAGA-AACAAGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCG
1 AAGATAAC-AGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TTG
* * * * * * * *
101039109 AAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGC-AGATCG
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAA-CAAG-TTG
** * *
101039154 AAGATTTCAGCA--TGGCATCCCTATGTTTATAGGGAACAAGTTA
1 AAGATAACAG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTTG
**
101039197 AAGGCAACAGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATTG
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TTG
* * * * * * * *
101039241 AAGATAATAGATCTGACACCCCTGTGCTTACAGCGAAGC-AGATCG
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAA-CAAG-TTG
* **
101039286 AGGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTG
1 AAGATAACAG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTTG
* * *
101039329 AAGATAGCAGATTTGGCATCCCTATGTTTATAGGGAAC-AGATCG
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TTG
* * * * * * * * *
101039373 AAGATAACAGATCTGACA-CTCATGTGCTTACAGCGAAGTAAATCG
1 AAGATAACAGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAGTTG
* **
101039418 AGGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAA-AAGTTG
1 AAGATAACAG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTTG
* * * * * *
101039460 AAGATAGCAGATTTGGCATCTCTGT-ATTATCAGAGAGC-AGATCG
1 AAGATAACAGATTTGGCATCCCTGTGTTTAT-AGGGAACAAG-TTG
* *
101039504 AAGATACCAGATTTGGCATCTCTGT
1 AAGATAACAGATTTGGCATCCCTGT
101039529 ATTGACAGAG
Statistics
Matches: 320, Mismatches: 77, Indels: 46
0.72 0.17 0.10
Matches are distributed among these distances:
41 1 0.00
42 17 0.05
43 40 0.12
44 218 0.68
45 40 0.12
46 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAAGTTG
Found at i:101039313 original size:132 final size:132
Alignment explanation
Indices: 101039073--101039515 Score: 683
Period size: 132 Copynumber: 3.4 Consensus size: 132
101039063 CAAAGAAACA
* *
101039073 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* * * **
101039138 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTAAAGGCA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
101039203 AC
131 GC
* * *
101039205 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAATAGATCTGACACCCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
101039270 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
101039335 GC
131 GC
* *
101039337 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCATGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* *
101039402 ACAGCGAAGTAAATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAA-AAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
101039466 GC
131 GC
* * * * *
101039468 AGATTTGGCATCTCTGT-ATTATCAGAGAGCAGATCGAAGATACCAGAT
1 AGATTTGGCATCCCTGTGTTTAT-AGGGAACAGATCGAAGATAACAGAT
101039516 TTGGCATCTC
Statistics
Matches: 286, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
130 4 0.01
131 51 0.18
132 231 0.81
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:101039529 original size:44 final size:44
Alignment explanation
Indices: 101039459--101039551 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
101039449 GGGAAAAGTT
* *
101039459 GAAGATAGCAGATTTGGCATCTCTGTATT-ATCAGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGA-CAGAGAGCAAATC
101039503 GAAGATACCAGATTTGGCATCTCTGTATTGACAGAGAGCAAATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGACAGAGAGCAAATC
101039547 GAAGA
1 GAAGA
101039552 CATAGCTGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 45 0.98
45 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGTATTGACAGAGAGCAAATC
Found at i:101039871 original size:205 final size:205
Alignment explanation
Indices: 101039538--101040252 Score: 1173
Period size: 205 Copynumber: 3.5 Consensus size: 205
101039528 TATTGACAGA
* *
101039538 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
* *
101039603 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGAAGGAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGAAGGGCAGA
* * *
101039668 CACATAGCAAATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTAG
131 CACATAGCAGATCCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
101039733 TGCTTACAAG
196 TGCTTACAAG
101039743 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
* * *
101039808 TTGGCATTTCTATATTGTCAGAGAACAAATCGAAGTCTGGTATCTCCACTTCGACGAAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGAAGGGCAGA
* *
101039873 CACATAGCAGATCCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGACATTCTTG
131 CACATAGCAGATCCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
101039938 TGCTTACAAG
196 TGCTTACAAG
* * * * *
101039948 GAGCAAATCGAAGACATAGCTGGTTTGGTTTTCATGTGCTTAAGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
101040013 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGAC-AGAGGGCAG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGA-AGGGCAG
* * ** *
101040077 ACACATAGCAGATCTAAACTTCAGATCTTTATACTGAAACAGGTCCAAGATGGTTTGGCATCCTT
130 ACACATAGCAGATCCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTT
101040142 GTGCTTACAAG
195 GTGCTTACAAG
*
101040153 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCTCGTGCTTACGTT-AAAGCAAATCTAAGATGA
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAA-CAAATCTAAGATGA
* *
101040217 TTTGGCATCTCTGTATTGTTAGGGAACAAATCGAAG
65 TTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
101040253 AAGCAAATTT
Statistics
Matches: 473, Mismatches: 35, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
204 3 0.01
205 470 0.99
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGAAGGGCAGA
CACATAGCAGATCCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
TGCTTACAAG
Found at i:101040417 original size:45 final size:45
Alignment explanation
Indices: 101040346--101040431 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
101040336 GAAGAAGAAA
*
101040346 ATTTAGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
1 ATTTAGCGTCTCTGTATTAGACGGGGACCAGATCAAAGATAACAG
* * *
101040391 ATTTGGCGTCTCTGTATTAGATGGGGACCAGATCAACGATA
1 ATTTAGCGTCTCTGTATTAGACGGGGACCAGATCAAAGATA
101040432 GCCTATATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (45 bp):
ATTTAGCGTCTCTGTATTAGACGGGGACCAGATCAAAGATAACAG
Found at i:101040817 original size:19 final size:19
Alignment explanation
Indices: 101040793--101040869 Score: 99
Period size: 19 Copynumber: 4.2 Consensus size: 19
101040783 AATCTTTAAG
101040793 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101040812 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
101040831 GATATG--AT-AT-GATAT
1 GATATGCAATCTTAGATAT
101040846 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
101040867 GAT
1 GAT
101040870 TTTGTAATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
15 11 0.22
16 1 0.02
17 4 0.08
18 1 0.02
19 25 0.50
21 8 0.16
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:101040834 original size:5 final size:5
Alignment explanation
Indices: 101040826--101040851 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
101040816 TGCAATCTTA
101040826 GATAT GATAT GATAT GATAT GATAT G
1 GATAT GATAT GATAT GATAT GATAT G
101040852 CAATCTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (5 bp):
GATAT
Found at i:101041864 original size:25 final size:25
Alignment explanation
Indices: 101041831--101041880 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
101041821 CAATTATTTC
101041831 GAGATTTCAAAACATAGTGTCCTAA
1 GAGATTTCAAAACATAGTGTCCTAA
101041856 GAGATTTCAAAACATAGTGTCCTAA
1 GAGATTTCAAAACATAGTGTCCTAA
101041881 CTTACTGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (25 bp):
GAGATTTCAAAACATAGTGTCCTAA
Found at i:101044388 original size:21 final size:23
Alignment explanation
Indices: 101044364--101044418 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 23
101044354 TAATAAAATT
101044364 TATAAATAAAATG-T--ATAATAA
1 TATAAATAAAATGATAAATAAT-A
*
101044385 TATAAATAATATGATAAATAATA
1 TATAAATAAAATGATAAATAATA
101044408 TATAAATAAAA
1 TATAAATAAAA
101044419 ATAATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 12 0.41
22 1 0.03
23 11 0.38
24 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
TATAAATAAAATGATAAATAATA
Found at i:101044393 original size:12 final size:11
Alignment explanation
Indices: 101044378--101044416 Score: 60
Period size: 12 Copynumber: 3.4 Consensus size: 11
101044368 AATAAAATGT
101044378 ATAATAATATAA
1 ATAAT-ATATAA
101044390 ATAATATGATAA
1 ATAATAT-ATAA
101044402 ATAATATATAA
1 ATAATATATAA
101044413 ATAA
1 ATAA
101044417 AAATAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
ATAATATATAA
Found at i:101044401 original size:17 final size:16
Alignment explanation
Indices: 101044381--101044428 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
101044371 AAAATGTATA
101044381 ATAATATAAATAATAT
1 ATAATATAAATAATAT
101044397 GATAA-AT-AAT-ATAT
1 -ATAATATAAATAATAT
*
101044411 A-AATAAAAATAATAT
1 ATAATATAAATAATAT
101044426 ATA
1 ATA
101044429 TACTATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
12 2 0.08
13 2 0.08
14 7 0.27
15 8 0.31
16 3 0.12
17 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
ATAATATAAATAATAT
Found at i:101044422 original size:21 final size:20
Alignment explanation
Indices: 101044355--101044430 Score: 59
Period size: 23 Copynumber: 3.7 Consensus size: 20
101044345 TACAACATAT
*
101044355 AATAA-AATTTATAAAT-AA
1 AATAATAATATATAAATAAA
*
101044373 AATGTATAATAATATAAATAATA
1 AAT-AATAAT-ATATAAATAA-A
*
101044396 TGATAAATAATATATAAATAAA
1 -AAT-AATAATATATAAATAAA
101044418 AATAAT-ATATATA
1 AATAATAATATATA
101044431 CTATTTTTAC
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
18 3 0.07
19 8 0.17
20 6 0.13
21 9 0.20
22 2 0.04
23 11 0.24
24 7 0.15
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (20 bp):
AATAATAATATATAAATAAA
Found at i:101044501 original size:25 final size:24
Alignment explanation
Indices: 101044455--101044510 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
101044445 AACTAATGTT
101044455 TATA-AAAATAAATAATACATATA
1 TATATAAAATAAATAATACATATA
* *
101044478 GTATTTAAAATAAATTAA-ATATATA
1 -TATATAAAATAAA-TAATACATATA
101044503 TATATAAA
1 TATATAAA
101044511 TGGATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 10 0.37
25 14 0.52
26 3 0.11
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (24 bp):
TATATAAAATAAATAATACATATA
Found at i:101049399 original size:30 final size:29
Alignment explanation
Indices: 101049357--101049547 Score: 168
Period size: 30 Copynumber: 6.3 Consensus size: 29
101049347 GTGTTTTCAC
*
101049357 CATCCCTTTTCATAATTTGATATCCGAAA
1 CATCCCTTTTCATAATTTGATAGCCGAAA
* * *
101049386 CTATCCCTCTTCATAATTCGATAGCCAGAGA
1 C-ATCCCTTTTCATAATTTGATAGCC-GAAA
101049417 CATCCCTTTTCATAATTTGATAGCC-AAA
1 CATCCCTTTTCATAATTTGATAGCCGAAA
** * * * *
101049445 GCCATCCCTTTTCATAATTCAATGGTCGTCAC
1 --CATCCCTTTTCATAATTTGATAGCCG-AAA
* *
101049477 CATCCCTTTTTCATAATTCGATAGCCGAAG
1 CATCCC-TTTTCATAATTTGATAGCCGAAA
* * *
101049507 CTATCCCTTTCCATATTTTGATAGCCGAAGC
1 C-ATCCCTTTTCATAATTTGATAGCCGAA-A
101049538 CATCCCTTTT
1 CATCCCTTTT
101049548 TATTGGTCGA
Statistics
Matches: 130, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
28 2 0.02
29 1 0.01
30 99 0.76
31 27 0.21
32 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.35
Consensus pattern (29 bp):
CATCCCTTTTCATAATTTGATAGCCGAAA
Found at i:101049452 original size:60 final size:58
Alignment explanation
Indices: 101049357--101049547 Score: 195
Period size: 60 Copynumber: 3.2 Consensus size: 58
101049347 GTGTTTTCAC
*
101049357 CATCCCTTTTCATAATTTGATATCCGAAA-CTATCCCTCTTCATAATTCGATAGCCAGAGA
1 CATCCCTTTTCATAATTTGATAGCC-AAAGCTATCCCT-TTCATAATTCGATAGCC-GAGA
* * * * **
101049417 CATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATAATTCAATGGTCGTCA
1 CATCCCTTTTCATAATTTGATAGCCAAAGCTATCCC-TTTCATAATTCGATAGCCGAGA
* * * * *
101049476 CCATCCCTTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGC
1 -CATCCC-TTTTCATAATTTGATAGCCAAAGCTATCCCTTT-CATAATTCGATAGCCG-AGA
101049538 CATCCCTTTT
1 CATCCCTTTT
101049548 TATTGGTCGA
Statistics
Matches: 107, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
59 5 0.05
60 57 0.53
61 45 0.42
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.35
Consensus pattern (58 bp):
CATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCTTTCATAATTCGATAGCCGAGA
Found at i:101049513 original size:61 final size:61
Alignment explanation
Indices: 101049353--101049521 Score: 207
Period size: 60 Copynumber: 2.8 Consensus size: 61
101049343 CATTGTGTTT
* * * *
101049353 TCACCATCCCTTTTCATAATTTGATATCCGAAACTATCCCTCTTCATAATTCGATAGCCAG
1 TCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCAATAGCCAG
** * * * *
101049414 AGA-CATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATAATTCAATGGTC-G
1 TCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCAATAGCCAG
* *
101049473 TCACCATCCCTTTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATA
1 TCACCATCCC-TTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATA
101049522 TTTTGATAGC
Statistics
Matches: 90, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
59 2 0.02
60 53 0.59
61 35 0.39
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (61 bp):
TCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAATTCAATAGCCAG
Found at i:101049541 original size:61 final size:61
Alignment explanation
Indices: 101049248--101049548 Score: 194
Period size: 61 Copynumber: 5.1 Consensus size: 61
101049238 TTACCACCCC
* * * * *
101049248 TTTTCATAGTTCGATAGCCAAAGCTATCCCTTTCTATATTTTGATAACCGTAGCCATCCCT
1 TTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGCCATCCCT
* * * ** * * * ***
101049309 ATTTCATAATTCAATGGTTGTCA-CCATCCCTTTCC--ATTGTG-TTTTC--A-CCATCCC-
1 TTTTCATAATTCGATAGCCG-AAGCTATCCCTTTCCATATTTTGATAGCCGAAGCCATCCCT
* * * * * *
101049363 TTTTCATAATTTGATATCCGAAACTATCCCTCTT-CATAATTCGATAGCC-AGAGACATCCC-
1 TTTTCATAATTCGATAGCCGAAGCTATCCCT-TTCCATATTTTGATAGCCGA-AGCCATCCCT
* * * * * ** * * *
101049423 TTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATAATTCAATGGTCGTCA-CCATCCCT
1 TTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATATTTTGATAGCCG-AAGCCATCCCT
101049484 TTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGCCATCCCT
1 TTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGCCATCCCT
101049545 TTTT
1 TTTT
101049549 ATTGGTCGAT
Statistics
Matches: 177, Mismatches: 49, Indels: 28
0.70 0.19 0.11
Matches are distributed among these distances:
53 1 0.01
54 21 0.12
55 9 0.05
56 4 0.02
57 2 0.01
58 2 0.01
59 8 0.05
60 52 0.29
61 77 0.44
62 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.37
Consensus pattern (61 bp):
TTTTCATAATTCGATAGCCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGCCATCCCT
Found at i:101049934 original size:31 final size:31
Alignment explanation
Indices: 101049899--101049962 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
101049889 CATGCAATTT
101049899 CACCCCTACCCAAGCCTAGCCGAATTTTATA
1 CACCCCTACCCAAGCCTAGCCGAATTTTATA
101049930 CACCCCTACCCAAGCCTAGCCGAATTTTATA
1 CACCCCTACCCAAGCCTAGCCGAATTTTATA
101049961 CA
1 CA
101049963 AACTCATAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.30, C:0.39, G:0.09, T:0.22
Consensus pattern (31 bp):
CACCCCTACCCAAGCCTAGCCGAATTTTATA
Found at i:101054953 original size:85 final size:84
Alignment explanation
Indices: 101054674--101054976 Score: 398
Period size: 83 Copynumber: 3.6 Consensus size: 84
101054664 ACCAATATCG
* *
101054674 AATAAAATCTAGTTAAACGGCGAGAATAAATCCCAAAACAGATTTAATTTAATTTAATTCTAATT
1 AATAAAATCTTGTTAAACGGCG-GAATAAATCCCAAAACAGATTTTATTTAATTTAATTCTAATT
* * *
101054739 T--AGAAATAAATATAATCA
65 TGGAAAAAAAAATAAAATCA
* * ** * *
101054757 AACAAAATCTTGTTAAACGACGGGAATAAAT-CTTAAATATATTTTATTTAATTTAATTCTAATT
1 AATAAAATCTTGTTAAACGGC-GGAATAAATCCCAAAACAGATTTTATTTAATTTAATTCTAATT
* *
101054821 TGG-AAACAACATAAAATCA
65 TGGAAAAAAAAATAAAATCA
*
101054840 AATAAAATCTTGTTAAACGGCGGAAATAAATCTCAAAACAGATTTTATTTAATTTAATTCTAATT
1 AATAAAATCTTGTTAAACGGCGG-AATAAATCCCAAAACAGATTTTATTTAATTTAATTCTAATT
101054905 TGGAAAAAAAAATAAAATCA
65 TGGAAAAAAAAATAAAATCA
* *
101054925 AATAAAATCTTGTTAAATGGCAGGAATAAATCCCAAAACAAATTTTATTTAA
1 AATAAAATCTTGTTAAACGGC-GGAATAAATCCCAAAACAGATTTTATTTAA
101054977 CTTTGATTTC
Statistics
Matches: 188, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
82 31 0.16
83 63 0.34
84 32 0.17
85 60 0.32
86 2 0.01
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.32
Consensus pattern (84 bp):
AATAAAATCTTGTTAAACGGCGGAATAAATCCCAAAACAGATTTTATTTAATTTAATTCTAATTT
GGAAAAAAAAATAAAATCA
Found at i:101055051 original size:87 final size:87
Alignment explanation
Indices: 101054948--101055177 Score: 232
Period size: 88 Copynumber: 2.6 Consensus size: 87
101054938 TAAATGGCAG
* * * * *
101054948 GAATAAATCCCAAAACAAATTTTATTTAACTTTGATTTCTCTTTTTTGGCAACAAA-ATCAAAA-
1 GAATAAATCCCGAAACAAATTTTATTTAA-TTTGAGTACT-TGTTTTGG-AAAAAACATCAAAAT
* * *
101055011 TGTAAT-AAATTCGTTGATCAACGA
63 TGGAATAAAATCCGTTGAACAACGA
* * *
101055035 GAATAAATCCCGAAACAGATTTTAATTTAATTTTAGTAGTTGTTTTGGAAAAAACATCAAAATTG
1 GAATAAATCCCGAAACAAATTTT-ATTTAATTTGAGTACTTGTTTTGGAAAAAACATCAAAATTG
** *
101055100 GAATAAAATCCGTTGAACGGCGG
65 GAATAAAATCCGTTGAACAACGA
* * *
101055123 GAATAAATCCCGAAATAAATTTTATTTTAATTTTAATACTTGTTTTGGAATAAAA
1 GAATAAATCCCGAAACAAATTTTA-TTTAATTTGAGTACTTGTTTTGGAA-AAAA
101055178 TCATTGAATA
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
85 5 0.04
86 14 0.12
87 33 0.28
88 63 0.53
89 4 0.03
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (87 bp):
GAATAAATCCCGAAACAAATTTTATTTAATTTGAGTACTTGTTTTGGAAAAAACATCAAAATTGG
AATAAAATCCGTTGAACAACGA
Found at i:101055367 original size:87 final size:87
Alignment explanation
Indices: 101055230--101055395 Score: 237
Period size: 87 Copynumber: 1.9 Consensus size: 87
101055220 CTCATTTTTG
* * * *
101055230 GAAATAAAATAAAAAAATTGAATAAAATCGTTGAACGGCAGGAATCAATCCTGAAACAGATTTTA
1 GAAATAAAATAAAAAAATGGAATAAAATCGTTAAACGGCAGGAATAAATCCCGAAACAGATTTTA
101055295 TTTACCTTTAATTTTCCATTTA
66 TTTACCTTTAATTTTCCATTTA
* *
101055317 GAAAT-AAATAAAAATAATGGAATAAAATCTGTTAAACGG-GGGAATAAATCCCGAAACGGATTT
1 GAAATAAAATAAAAA-AATGGAATAAAATC-GTTAAACGGCAGGAATAAATCCCGAAACAGATTT
*
101055380 TATTTACTTTTAATTT
64 TATTTACCTTTAATTT
101055396 GGAAACAAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
86 9 0.13
87 53 0.76
88 8 0.11
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (87 bp):
GAAATAAAATAAAAAAATGGAATAAAATCGTTAAACGGCAGGAATAAATCCCGAAACAGATTTTA
TTTACCTTTAATTTTCCATTTA
Found at i:101058245 original size:30 final size:30
Alignment explanation
Indices: 101058211--101058271 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
101058201 TCCGCCTCAC
101058211 CTCTTCTCTTACTCATACACCCACCACCAT
1 CTCTTCTCTTACTCATACACCCACCACCAT
* *
101058241 CTCTTCTCTTACTCTTACACCCACCGCCAT
1 CTCTTCTCTTACTCATACACCCACCACCAT
101058271 C
1 C
101058272 CAATCTCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.48, G:0.02, T:0.31
Consensus pattern (30 bp):
CTCTTCTCTTACTCATACACCCACCACCAT
Found at i:101059646 original size:31 final size:31
Alignment explanation
Indices: 101059611--101059706 Score: 147
Period size: 31 Copynumber: 3.1 Consensus size: 31
101059601 TTATTCATAA
101059611 AACTCAAATCAACAATCATAATCAATTAAAC
1 AACTCAAATCAACAATCATAATCAATTAAAC
101059642 AACTCAAATCAACAATCATAATCAATTAAAC
1 AACTCAAATCAACAATCATAATCAATTAAAC
* * ** *
101059673 AACTCAAATCGACAATTATCTTCGATTAAAC
1 AACTCAAATCAACAATCATAATCAATTAAAC
101059704 AAC
1 AAC
101059707 ATAGAAACTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.51, C:0.23, G:0.02, T:0.24
Consensus pattern (31 bp):
AACTCAAATCAACAATCATAATCAATTAAAC
Found at i:101059682 original size:18 final size:18
Alignment explanation
Indices: 101059621--101059674 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
101059611 AACTCAAATC
101059621 AACAATCATAATCAATTA
1 AACAATCATAATCAATTA
101059639 AACAACTCA-AATC-----
1 AACAA-TCATAATCAATTA
101059652 AACAATCATAATCAATTA
1 AACAATCATAATCAATTA
101059670 AACAA
1 AACAA
101059675 CTCAAATCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 14
0.67 0.00 0.33
Matches are distributed among these distances:
12 3 0.10
13 9 0.31
18 14 0.48
19 3 0.10
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.22
Consensus pattern (18 bp):
AACAATCATAATCAATTA
Found at i:101069015 original size:26 final size:27
Alignment explanation
Indices: 101068963--101069015 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
101068953 TTTCTATTTG
*
101068963 ATTTAAATTTTATTATATATGACTTTTT
1 ATTTAAATTTTA-TATATATGAATTTTT
101068991 ATTTAAATTTTA-ATATATGAATTTT
1 ATTTAAATTTTATATATATGAATTTT
101069016 GTTAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 12 0.50
28 12 0.50
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (27 bp):
ATTTAAATTTTATATATATGAATTTTT
Found at i:101069020 original size:24 final size:27
Alignment explanation
Indices: 101068965--101069021 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
101068955 TCTATTTGAT
* *
101068965 TTAAATTTTATTATATATGACTTTTTAT
1 TTAAATTTTA-TATATATGACATTTTAG
101068993 TTAAATTTTA-ATATATGA-ATTTT-G
1 TTAAATTTTATATATATGACATTTTAG
101069017 TTAAA
1 TTAAA
101069022 AATAATTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.19
25 4 0.15
26 8 0.30
28 10 0.37
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (27 bp):
TTAAATTTTATATATATGACATTTTAG
Found at i:101076804 original size:50 final size:50
Alignment explanation
Indices: 101076681--101076864 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
101076671 CTGGTATGCA
* * * *
101076681 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACG
** * *
101076730 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACG
* * * *
101076780 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCAGGTACACG
* * *
101076831 TAGTAGGCTGCACTTAATACTACACAAGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
101076865 CACAATAAAT
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
49 31 0.27
50 45 0.40
51 37 0.33
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACG
Found at i:101076853 original size:101 final size:99
Alignment explanation
Indices: 101076681--101076864 Score: 260
Period size: 101 Copynumber: 1.8 Consensus size: 99
101076671 CTGGTATGCA
* * **
101076681 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* *
101076746 GTACTACACACGTGACCTAACCATCTGATACACG
66 ATACTACACAAGTGACCTAACCATCTGATACACG
* * * *
101076780 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGGCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
101076845 TAATACTACACAAGTGACCT
64 TAATACTACACAAGTGACCT
101076865 CACAATAAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 29 0.40
100 3 0.04
101 41 0.56
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
ATACTACACAAGTGACCTAACCATCTGATACACG
Found at i:101077140 original size:27 final size:27
Alignment explanation
Indices: 101077110--101077163 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
101077100 TCATACAACC
*
101077110 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
**
101077137 CATGTAATAATAATTTGCCATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
101077164 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAATAATAATTTAACATTCAATT
Found at i:101079782 original size:26 final size:26
Alignment explanation
Indices: 101079744--101079821 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
101079734 TGATACAAAT
*
101079744 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101079770 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101079796 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101079822 CGATGGGAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101082642 original size:13 final size:13
Alignment explanation
Indices: 101082624--101082648 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101082614 TTGAATTATT
101082624 ATTTAATTAAATA
1 ATTTAATTAAATA
101082637 ATTTAATTAAAT
1 ATTTAATTAAAT
101082649 TGATTAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTAATTAAATA
Found at i:101083545 original size:20 final size:21
Alignment explanation
Indices: 101083520--101083562 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
101083510 TCCAACATAG
*
101083520 GGGGAT-TCGTACTGATACTT
1 GGGGATCTCGTACCGATACTT
*
101083540 GGGGATCTTGTACCGATACTT
1 GGGGATCTCGTACCGATACTT
101083561 GG
1 GG
101083563 ACCTTAACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.33
Consensus pattern (21 bp):
GGGGATCTCGTACCGATACTT
Found at i:101085089 original size:13 final size:13
Alignment explanation
Indices: 101085073--101085106 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
101085063 ATAATTTCAT
101085073 GAAAATTTCGGTC
1 GAAAATTTCGGTC
* *
101085086 GAAAATTTCGTTT
1 GAAAATTTCGGTC
101085099 GAAAATTT
1 GAAAATTT
101085107 TGATGTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (13 bp):
GAAAATTTCGGTC
Found at i:101086333 original size:43 final size:42
Alignment explanation
Indices: 101086194--101086355 Score: 166
Period size: 42 Copynumber: 3.8 Consensus size: 42
101086184 AGGGTTACTT
* * * *
101086194 AGATTACGTGTAAGATCATATTTGGGATATGGAATCGATATG
1 AGATTACGTGTAAGACCATAGTTGGGATATGGCATCGATAAG
* *
101086236 AGATTTCGTGTAAGACCAT-GTTTGGGATATGGCATCAATAAG
1 AGATTACGTGTAAGACCATAG-TTGGGATATGGCATCGATAAG
* * * * *
101086278 AGATTTCCTGTAAGACCATAGCTGGGCTATTGGCATCGATACG
1 AGATTACGTGTAAGACCATAGTTGGGATA-TGGCATCGATAAG
* *
101086321 AGATTACATGTAAGACCATA-TCTAGGATATGGCAT
1 AGATTACGTGTAAGACCATAGT-TGGGATATGGCAT
101086356 TGGTATTGTA
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
42 65 0.65
43 35 0.35
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATAGTTGGGATATGGCATCGATAAG
Found at i:101093206 original size:18 final size:19
Alignment explanation
Indices: 101093171--101093208 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
101093161 AAACTATTCA
101093171 AATAACCTATGGCAAATCC
1 AATAACCTATGGCAAATCC
*
101093190 AATAACCTAT-TCAAATCC
1 AATAACCTATGGCAAATCC
101093208 A
1 A
101093209 TACCAAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.45, C:0.26, G:0.05, T:0.24
Consensus pattern (19 bp):
AATAACCTATGGCAAATCC
Found at i:101100947 original size:64 final size:66
Alignment explanation
Indices: 101100866--101101017 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 66
101100856 AGACATTATG
* * *
101100866 ATGTAGCTAGGTCGCATGGGTGATAC-GATG-TGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACAGATGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
*
101100929 T
66 A
* * * * *
101100930 ATGTAGCTAGGTCGCATGCGTGGCTCCAGGTGAAGGACACCGTGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACAGATGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
101100995 AA
65 AA
* *
101100997 AT-TGGCTAGGTCACATGGGTG
1 ATGTAGCTAGGTCGCATGGGTG
101101018 GTACTGAGTG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
64 20 0.27
65 4 0.05
66 18 0.25
67 31 0.42
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGATACAGATGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
A
Found at i:101105346 original size:42 final size:44
Alignment explanation
Indices: 101105263--101105402 Score: 142
Period size: 42 Copynumber: 3.2 Consensus size: 44
101105253 TCTCAGACGT
* * * * *
101105263 GGTCTTACATGTAATTCAG-TATCGATACCACTGTCCCAGACAG
1 GGTCTTACACGTAAATCAGATATCGATGCCAATGTCCCAGACAC
*
101105306 GGTCTTACACG-AAATCAGATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAAATCAGATATCGATGCCAATGTCCCAGACAC
* * * * ** *
101105348 GGTCTTACATGTAAATCTGAAATCGAGGCCCGTGTCCTAGACAC
1 GGTCTTACACGTAAATCAGATATCGATGCCAATGTCCCAGACAC
101105392 GGTCTTACACG
1 GGTCTTACACG
101105403 ATATTTCAGA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 34 0.43
43 20 0.25
44 26 0.32
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (44 bp):
GGTCTTACACGTAAATCAGATATCGATGCCAATGTCCCAGACAC
Found at i:101111102 original size:71 final size:71
Alignment explanation
Indices: 101111027--101111168 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
101111017 ATTTAGTGAC
101111027 TATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTGAACCTTGATAAACTTGTT
1 TATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTGAACCTTGATAAACTTGTT
101111092 TTAGTT
66 TTAGTT
101111098 TATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTGAACCTTGATAAACTTGTT
1 TATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTGAACCTTGATAAACTTGTT
101111163 TTAGTT
66 TTAGTT
101111169 GCTCATAAGC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.39
Consensus pattern (71 bp):
TATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTGAACCTTGATAAACTTGTT
TTAGTT
Found at i:101111323 original size:47 final size:47
Alignment explanation
Indices: 101111253--101111914 Score: 1191
Period size: 47 Copynumber: 14.1 Consensus size: 47
101111243 GAAATGATAG
*
101111253 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111299 TGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 T-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111347 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111394 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111441 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111488 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111535 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111582 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
101111629 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
101111676 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111723 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111770 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111817 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
101111864 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
101111911 TAAG
1 TAAG
101111915 TCCCGAAGGT
Statistics
Matches: 596, Mismatches: 18, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
46 1 0.00
47 594 1.00
48 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:101112089 original size:37 final size:37
Alignment explanation
Indices: 101112033--101112111 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
101112023 CCGAGCTCTA
* *
101112033 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
101112070 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
101112107 AAGAC
1 AAGAC
101112112 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:101123790 original size:73 final size:73
Alignment explanation
Indices: 101123671--101123818 Score: 296
Period size: 73 Copynumber: 2.0 Consensus size: 73
101123661 TTTAATCCTT
101123671 ATAGCTACTAGAATTCAACTTTCCCATTTTATGCGATTTAGTCATTCTCGTAATTAAACACATAA
1 ATAGCTACTAGAATTCAACTTTCCCATTTTATGCGATTTAGTCATTCTCGTAATTAAACACATAA
101123736 TTGATAAA
66 TTGATAAA
101123744 ATAGCTACTAGAATTCAACTTTCCCATTTTATGCGATTTAGTCATTCTCGTAATTAAACACATAA
1 ATAGCTACTAGAATTCAACTTTCCCATTTTATGCGATTTAGTCATTCTCGTAATTAAACACATAA
101123809 TTGATAAA
66 TTGATAAA
101123817 AT
1 AT
101123819 TTTCGTATCA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.37
Consensus pattern (73 bp):
ATAGCTACTAGAATTCAACTTTCCCATTTTATGCGATTTAGTCATTCTCGTAATTAAACACATAA
TTGATAAA
Found at i:101128177 original size:43 final size:43
Alignment explanation
Indices: 101128116--101128201 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
101128106 CACAAGAATG
*
101128116 GTTGTACACATTTCAGCTAACGGAGCTTTTCTTTCAAATTCAT
1 GTTGTACACATTTCAGCTAACGAAGCTTTTCTTTCAAATTCAT
101128159 GTTGTACACATTTCAGCTAACGAAGCTTTTCTTTCAAATTCAT
1 GTTGTACACATTTCAGCTAACGAAGCTTTTCTTTCAAATTCAT
101128202 ACAATGAGGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.40
Consensus pattern (43 bp):
GTTGTACACATTTCAGCTAACGAAGCTTTTCTTTCAAATTCAT
Found at i:101136548 original size:39 final size:39
Alignment explanation
Indices: 101136227--101136525 Score: 562
Period size: 39 Copynumber: 7.6 Consensus size: 39
101136217 GTGGCTAATT
* * *
101136227 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
101136266 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
101136306 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
101136345 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
101136384 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
101136423 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
101136462 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
101136501 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
101136526 AGCTAGTGGC
Statistics
Matches: 256, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
39 220 0.86
40 36 0.14
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
Found at i:101144544 original size:39 final size:39
Alignment explanation
Indices: 101144409--101144593 Score: 237
Period size: 40 Copynumber: 4.7 Consensus size: 39
101144399 TTGGATGATA
* * * **
101144409 ACCGGGGTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACT-AT
* * *
101144449 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
101144488 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
101144528 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
101144567 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
101144594 AGCTAGTGGC
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
39 38 0.30
40 88 0.69
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:101144626 original size:39 final size:40
Alignment explanation
Indices: 101144410--101144616 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
101144400 TGGATGATAA
* * * *
101144410 CCGGGGTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTGACTATA-T
*
101144450 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATAT
* *
101144490 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
101144529 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
101144569 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
101144609 CC-GGCTAA
1 CCGGGCTAA
101144617 ACTCCGAAGG
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 44 0.30
40 100 0.68
41 4 0.03
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:101144626 original size:79 final size:80
Alignment explanation
Indices: 101144406--101144616 Score: 286
Period size: 79 Copynumber: 2.7 Consensus size: 80
101144396 TGTTTGGATG
*
101144406 ATAACCGGGGTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
*
101144469 CATTCGTGCGAGCTACT
64 CATTCGTGCAAGCTACT
* * * ***
101144486 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
* *
101144550 TTTGTGCAAGTTACT
66 TTCGTGCAAGCTACT
101144565 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
101144617 ACTCCGAAGG
Statistics
Matches: 112, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
79 76 0.68
80 33 0.29
81 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCAAGCTACT
Found at i:101151268 original size:20 final size:20
Alignment explanation
Indices: 101151243--101151281 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
101151233 TTAAAAAGAT
* *
101151243 AAATAAAGATAAAAGTAAAC
1 AAATAAAAATAAAAATAAAC
101151263 AAATAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAA
101151282 GTAAAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAC
Found at i:101159045 original size:28 final size:28
Alignment explanation
Indices: 101159013--101159074 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
101159003 TTAATATACT
101159013 CAAATAGTCAGGTGAGTATTCGGCCAAG
1 CAAATAGTCAGGTGAGTATTCGGCCAAG
101159041 CAAATAGTCAGGTGAGTATTCGGCCAAG
1 CAAATAGTCAGGTGAGTATTCGGCCAAG
*
101159069 TAAATA
1 CAAATA
101159075 AAAATGCAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (28 bp):
CAAATAGTCAGGTGAGTATTCGGCCAAG
Found at i:101160045 original size:42 final size:42
Alignment explanation
Indices: 101159917--101160029 Score: 208
Period size: 42 Copynumber: 2.7 Consensus size: 42
101159907 CTCGATATAT
101159917 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
101159959 TATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
101160001 TATATATACGGGTTAAATCCCGCAGGCTT
1 TATATATCCGGGTTAAATCCCGCAGGCTT
101160030 AGTCCCGGTA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:101162175 original size:17 final size:17
Alignment explanation
Indices: 101162153--101162191 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
101162143 TTTGAAAAGG
101162153 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
*
101162170 AAAACAATTGAATCTTA
1 AAAACAAATGAATCTTA
101162187 AAAAC
1 AAAAC
101162192 TTAATGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:101173913 original size:26 final size:25
Alignment explanation
Indices: 101173854--101173909 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
101173844 CAACAAAACT
* * *
101173854 AAAATCTAACCTAAAAAGAAAATAG
1 AAAACCTAAACTAAAAAGAAAAGAG
101173879 AAAACCTAAACTAAAAATGAAAAGA-
1 AAAACCTAAACTAAAAA-GAAAAGAG
101173904 AAAACC
1 AAAACC
101173910 CTAACCCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.12
Consensus pattern (25 bp):
AAAACCTAAACTAAAAAGAAAAGAG
Found at i:101174227 original size:21 final size:21
Alignment explanation
Indices: 101174170--101174229 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
101174160 GACTTAGGGT
* *
101174170 CTCAGTATCGCGAGACCCATC
1 CTCAGTATCGCGATACCAATC
101174191 CTCAGTATCGCGATACCAATC
1 CTCAGTATCGCGATACCAATC
* *
101174212 CTTAGTATCGCAATACCA
1 CTCAGTATCGCGATACCA
101174230 TTATAGGTGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.23
Consensus pattern (21 bp):
CTCAGTATCGCGATACCAATC
Found at i:101175781 original size:38 final size:38
Alignment explanation
Indices: 101175733--101175830 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 38
101175723 CCAGCGGAAC
*
101175733 TTTAAGCCCGGATATAGTACCAGCACTAAGCCTGCGGGA
1 TTTAA-CCCGGATATAGTACCAGCACGAAGCCTGCGGGA
*
101175772 TTTAACCCGGATATATATATATTACCAGCACGAAGCCTGCGGGA
1 TTTAACCCGG------ATATAGTACCAGCACGAAGCCTGCGGGA
101175816 TTTAACCCGGATATA
1 TTTAACCCGGATATA
101175831 TAATATATCG
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
38 10 0.20
39 5 0.10
44 36 0.71
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (38 bp):
TTTAACCCGGATATAGTACCAGCACGAAGCCTGCGGGA
Found at i:101175798 original size:44 final size:45
Alignment explanation
Indices: 101175744--101175838 Score: 165
Period size: 44 Copynumber: 2.1 Consensus size: 45
101175734 TTAAGCCCGG
* *
101175744 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAT-
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATA
101175788 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATA
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATA
101175833 ATATAT
1 ATATAT
101175839 CGAGTGCTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 42 0.88
45 6 0.12
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (45 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATA
Found at i:101179855 original size:46 final size:45
Alignment explanation
Indices: 101179786--101179961 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
101179776 TATTTGGGCA
101179786 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
101179832 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
101179879 TCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
101179925 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101179962 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:101179941 original size:93 final size:93
Alignment explanation
Indices: 101179782--101179954 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
101179772 GGGATATTTG
* **
101179782 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
101179847 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
101179875 GGCATCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
101179940 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
101179955 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:101182334 original size:40 final size:40
Alignment explanation
Indices: 101182259--101182449 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
101182249 CGGATGATAA
* * *
101182259 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
101182299 CGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
101182339 CGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
101182379 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTTC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
101182419 CGAAGGCATTTGAGCGAG-TAGCTATATCCGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGG
101182450 TTAAATCCTG
Statistics
Matches: 139, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:101183954 original size:27 final size:27
Alignment explanation
Indices: 101183937--101184141 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
101183927 ATATCGAGTC
* * *
101183937 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
101183964 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
101183991 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
101184018 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
101184046 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
101184073 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
101184100 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
101184127 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
101184142 GTACAATTTA
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
27 134 0.85
28 24 0.15
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:101198866 original size:27 final size:27
Alignment explanation
Indices: 101198836--101199013 Score: 207
Period size: 27 Copynumber: 6.5 Consensus size: 27
101198826 AAATTGTACA
* * *
101198836 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGAATGGACTATGTG
101198863 GCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCG-AATGGACTATG-TG
* * *
101198890 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATGGACTATGTG
101198917 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTG
* * * * *
101198945 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAATGGACTATGTG
101198972 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTG
101199000 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101199014 GGCTCAATAA
Statistics
Matches: 127, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.04
27 72 0.57
28 50 0.39
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATGGACTATGTG
Found at i:101198976 original size:55 final size:55
Alignment explanation
Indices: 101198836--101199013 Score: 252
Period size: 55 Copynumber: 3.3 Consensus size: 55
101198826 AAATTGTACA
* * *
101198836 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGACTATG-TG
* * **
101198890 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGACTATGTG
* *
101198945 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGACTATGTG
101199000 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101199014 GGCTCAATAA
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
54 43 0.39
55 67 0.61
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (55 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGACTATGTG
Found at i:101200090 original size:96 final size:96
Alignment explanation
Indices: 101199926--101200119 Score: 379
Period size: 96 Copynumber: 2.0 Consensus size: 96
101199916 TGGATTCCCT
101199926 ACTCCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGACGTACCATATATGTAC
1 ACTCCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGACGTACCATATATGTAC
101199991 AGATTCCTCTCTGAGTCTAGTTTTCATAGAA
66 AGATTCCTCTCTGAGTCTAGTTTTCATAGAA
*
101200022 ACTCCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTAC
1 ACTCCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGACGTACCATATATGTAC
101200087 AGATTCCTCTCTGAGTCTAGTTTTCATAGAA
66 AGATTCCTCTCTGAGTCTAGTTTTCATAGAA
101200118 AC
1 AC
101200120 AAACAGCAAC
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32
Consensus pattern (96 bp):
ACTCCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAGGGGACGTACCATATATGTAC
AGATTCCTCTCTGAGTCTAGTTTTCATAGAA
Found at i:101201137 original size:112 final size:112
Alignment explanation
Indices: 101200940--101201162 Score: 419
Period size: 112 Copynumber: 2.0 Consensus size: 112
101200930 CGTTCGGGAC
* *
101200940 TATGGAAATCAAGGTCCTCCACCAATAGTAAGCTGAGTCTCGCAACAAGGATACGGCACATTTTA
1 TATGGAAATCAAGGTCCTCCACCAATAGTAAGCTGAGTCTCGCAACAAAGATACAGCACATTTTA
101201005 GACATTCATCGGGTGTGCATGACAATTCATCGAACACCCGAATGGTA
66 GACATTCATCGGGTGTGCATGACAATTCATCGAACACCCGAATGGTA
*
101201052 TATGGAAATCAAGGTCCTCCACCAATAGTAGGCTGAGTCTCGCAACAAAGATACAGCACATTTTA
1 TATGGAAATCAAGGTCCTCCACCAATAGTAAGCTGAGTCTCGCAACAAAGATACAGCACATTTTA
101201117 GACATTCATCGGGTGTGCATGACAATTCATCGAACACCCGAATGGT
66 GACATTCATCGGGTGTGCATGACAATTCATCGAACACCCGAATGGT
101201163 GTTATCAAGC
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 108 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (112 bp):
TATGGAAATCAAGGTCCTCCACCAATAGTAAGCTGAGTCTCGCAACAAAGATACAGCACATTTTA
GACATTCATCGGGTGTGCATGACAATTCATCGAACACCCGAATGGTA
Found at i:101201513 original size:44 final size:44
Alignment explanation
Indices: 101201427--101201837 Score: 266
Period size: 44 Copynumber: 9.3 Consensus size: 44
101201417 GGCGATATCC
* * * * * *
101201427 GCTATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAAATTT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCT
* *
101201472 GCTATCTTCGATCTGTTCCTTATAAGCACAGGGATCCCAAATCT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCT
* * * *
101201516 GCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGTC--ATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CT
** * * * * * * *
101201559 GAAATCTTTGATCTAGTTCACTGTAAGCACAAGAATGTCAGATCT
1 GCTATCTTCGATCT-GTTCCCTATAAGCACAGGGATGCCAAATCT
*
101201604 GCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCT
* * * *
101201648 GTTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAATCT
* * * *
101201692 GATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CT
*** * *
101201735 AAAATCTTC-AACTTGTTCCCTATAAGTACAGGGATGCC--ATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CT
** * * * * * *
101201778 GAAATCTTGGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCT
*
101201823 GCTATCTTCGGTCTG
1 GCTATCTTCGATCTG
101201838 CTCCTCTGCA
Statistics
Matches: 297, Mismatches: 57, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
42 4 0.01
43 60 0.20
44 190 0.64
45 39 0.13
46 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCT
Found at i:101201667 original size:132 final size:132
Alignment explanation
Indices: 101201430--101201683 Score: 429
Period size: 132 Copynumber: 1.9 Consensus size: 132
101201420 GATATCCGCT
* * * *
101201430 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAAATTTGCTATCTTCGATCTGTTCCTTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAAGAATGTCAAATCTGCTATCTTCGATCCGTTCCCTAT
101201495 AAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTG
66 AAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTG
101201560 AA
131 AA
*
101201562 ATCTTTGATCTAG-TTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCCGTTCCCTA
1 ATCTTTGATCT-GCTTCACTGTAAGCACAAGAATGTCAAATCTGCTATCTTCGATCCGTTCCCTA
* *
101201626 TAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
65 TAAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
101201684 CCAAATCTGA
Statistics
Matches: 114, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
132 113 0.99
133 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (132 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAAGAATGTCAAATCTGCTATCTTCGATCCGTTCCCTAT
AAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTG
AA
Found at i:101201718 original size:132 final size:132
Alignment explanation
Indices: 101201443--101201721 Score: 382
Period size: 132 Copynumber: 2.1 Consensus size: 132
101201433 TTTGATCTGC
* * * * *
101201443 TTCACTGTAAGCACAGGAATGTCAAATTTGCTATCTTCGATCTGTTCCTTATAAGCACAGGGATC
1 TTCACTATAAGCACAAGAATGTCAAATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATC
* * *
101201508 CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTGAAATCTTTGATCT
66 CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTCAACT
101201573 AG
131 AG
* * *
101201575 TTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATG
1 TTCACTATAAGCACAAGAATGTCAAATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATC
* **
101201640 CCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAA
66 CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTCAA
*
101201703 CTTG
129 CTAG
*
101201707 TTCCCTATAAGCACA
1 TTCACTATAAGCACA
101201722 GGGATGCCAT
Statistics
Matches: 130, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
132 123 0.95
133 5 0.04
134 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
TTCACTATAAGCACAAGAATGTCAAATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGATC
CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTCAACT
AG
Found at i:101201972 original size:68 final size:68
Alignment explanation
Indices: 101201888--101202075 Score: 279
Period size: 68 Copynumber: 2.8 Consensus size: 68
101201878 TCTTCCACTC
* * * * * *
101201888 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCAAATGCCATTTCTGGAAGAAGAGGT-TT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
*
101201952 GTTG
66 -CTG
* *
101201956 AAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATCCT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
101202021 CTG
66 CTG
101202024 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
101202076 GAAAAATAAA
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
68 107 0.99
69 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (68 bp):
AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
CTG
Found at i:101202213 original size:43 final size:43
Alignment explanation
Indices: 101202155--101202489 Score: 265
Period size: 43 Copynumber: 7.7 Consensus size: 43
101202145 CTATTTCCCA
* *
101202155 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCT
* *
101202198 ACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCAGCCTGTTACCCT
* * * * *
101202243 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCT
* * * * *
101202286 ACTGCTTAGGGGGTTAAAGCCCATCAT-T--TTTTA-TCTATTTCCCT
1 ACTGCTTAGGGGGTT-AAG---ATC-TGTAAATTCAGCCTGTTACCCT
*
101202330 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCAGCCTGTTACCCT
* * * *
101202375 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCAGCCTGTTACCCT
* * * *
101202418 ACTGCTTAGGGGGTTAAAGCCCATCATCT---TTGA-TCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAG---ATC-TGTAAATTCAGCCTGTTACCCT
101202462 ACTGCTTAGGGGGTTAAGATCTGTAAAT
1 ACTGCTTAGGGGGTTAAGATCTGTAAAT
101202490 CTTCAGTCTA
Statistics
Matches: 230, Mismatches: 40, Indels: 45
0.73 0.13 0.14
Matches are distributed among these distances:
39 3 0.01
40 7 0.03
42 1 0.00
43 85 0.37
44 55 0.24
45 73 0.32
47 2 0.01
48 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (43 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCT
Found at i:101202271 original size:88 final size:87
Alignment explanation
Indices: 101202155--101202434 Score: 287
Period size: 88 Copynumber: 3.2 Consensus size: 87
101202145 CTATTTCCCA
* * * *
101202155 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACTT
101202220 GTAAATCTTCAGCCTGTTACCCT
66 GTAAAT-TTCAGCCTGTTACCCT
* * * * * *
101202243 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCC
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT-AAG-AC
* * ** * * * *
101202308 AT-CATTTTTTA-TCTATTTCCCT
64 TTGTAAATTTCAGCCTGTTACCCT
* * *
101202330 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAGGC
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGAC
* *
101202395 TTGTAAA-TTCGGCTTGTTACCCT
64 TTGTAAATTTCAGCCTGTTACCCT
101202418 ACTGCTTAGGGGGTTAA
1 ACTGCTTAGGGGGTTAA
101202435 AGCCCATCAT
Statistics
Matches: 150, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
87 36 0.24
88 81 0.54
89 32 0.21
90 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (87 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACTT
GTAAATTTCAGCCTGTTACCCT
Found at i:101202330 original size:132 final size:132
Alignment explanation
Indices: 101202194--101202495 Score: 541
Period size: 132 Copynumber: 2.3 Consensus size: 132
101202184 CAACCTGTTA
* * *
101202194 CCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
* * *
101202259 AGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTAT
66 AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTAT
101202324 TT
131 TT
101202326 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
*
101202391 AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGT
66 AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTAT
101202456 TT
131 TT
101202458 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
101202496 TCTATTCCAC
Statistics
Matches: 163, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 163 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (132 bp):
CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTAT
TT
Found at i:101202415 original size:175 final size:174
Alignment explanation
Indices: 101202102--101202434 Score: 479
Period size: 175 Copynumber: 1.9 Consensus size: 174
101202092 ATTTCTAGCC
* *
101202102 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* * *
101202167 GTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAG
66 GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAA-CTTCAG
*
101202232 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCT
130 CCTGTTACCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCT
* * ** * *
101202277 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTATTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* * * *
101202342 GTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA-TTCG
66 GTTAAGATCTGTAAA--TTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAACTTCA
*
101202406 GCTTGTTACCCTACTGCTTAGGGGGTTAA
129 GCCTGTTACCCTACTGCTTAGGGGGTTAA
101202435 AGCCCATCAT
Statistics
Matches: 139, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
175 102 0.73
177 37 0.27
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (174 bp):
TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAACTTCAGC
CTGTTACCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCT
Found at i:101202788 original size:97 final size:97
Alignment explanation
Indices: 101202622--101203005 Score: 709
Period size: 97 Copynumber: 4.0 Consensus size: 97
101202612 AAGATCTGCA
*
101202622 ATCTTTAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
101202687 TAGTCACATGGAGGTAAAATTTGCCATCTTTG
66 TAGTCACATGGAGGTAAAATTTGCCATCTTTG
101202719 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
101202784 TAGTCACATGGAGGTAAAATTTGCCATCTTTG
66 TAGTCACATGGAGGTAAAATTTGCCATCTTTG
101202816 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
101202881 TAGTCACATGGAGGTAAAATTTGCCATCTTTG
66 TAGTCACATGGAGGTAAAATTTGCCATCTTTG
*
101202913 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
* **
101202978 TAGT--CAGGGAGGTAAAATCCGCCATCTT
66 TAGTCACATGGAGGTAAAATTTGCCATCTT
101203006 CGACCTGCTT
Statistics
Matches: 282, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
95 21 0.07
97 261 0.93
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (97 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
TAGTCACATGGAGGTAAAATTTGCCATCTTTG
Done.