Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 309 of 310
Found at i:101709550 original size:104 final size:104
Alignment explanation
Indices: 101709389--101709701 Score: 617
Period size: 104 Copynumber: 3.0 Consensus size: 104
101709379 GCCACCTAGG
101709389 TGTTTGGGGAGTGACGTGTGGATGTTTAGGGGGAGCCAGAGTTCAAGTCACAAGGTAAGCATGTT
1 TGTTTGGGGAGTGACGTGTGGATGTTTAGGGGGAGCCAGAGTTCAAGTCACAAGGTAAGCATGTT
101709454 GTTACTTTTATTTTATGTGTGCATGTGCCGGGCATGTGA
66 GTTACTTTTATTTTATGTGTGCATGTGCCGGGCATGTGA
101709493 TGTTTGGGGAGTGACGTGTGGATGTTTAGGGGGAGCCAGAGTTCAAGTCACAAGGTAAGCATGTT
1 TGTTTGGGGAGTGACGTGTGGATGTTTAGGGGGAGCCAGAGTTCAAGTCACAAGGTAAGCATGTT
101709558 GTTACTTTTATTTTATGTGTGCATGTGCCGGGCATGTGA
66 GTTACTTTTATTTTATGTGTGCATGTGCCGGGCATGTGA
*
101709597 TGTTTGGGGAGTGACGTGTGGATGTTTAGGGGGAGCCAGAGTTCAAGTCACAAGGTAAGCGTGTT
1 TGTTTGGGGAGTGACGTGTGGATGTTTAGGGGGAGCCAGAGTTCAAGTCACAAGGTAAGCATGTT
101709662 GTTACTTTTATTTTATGTGTGCATGTGCCGGGCATGTGA
66 GTTACTTTTATTTTATGTGTGCATGTGCCGGGCATGTGA
101709701 T
1 T
101709702 AGAGCTTAAG
Statistics
Matches: 208, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 208 1.00
ACGTcount: A:0.20, C:0.12, G:0.35, T:0.34
Consensus pattern (104 bp):
TGTTTGGGGAGTGACGTGTGGATGTTTAGGGGGAGCCAGAGTTCAAGTCACAAGGTAAGCATGTT
GTTACTTTTATTTTATGTGTGCATGTGCCGGGCATGTGA
Found at i:101711409 original size:20 final size:20
Alignment explanation
Indices: 101711379--101711423 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
101711369 TTGTTTTGTT
101711379 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
101711398 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
101711418 ATGGGC
1 ATGGGC
101711424 AAGACCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:101714363 original size:11 final size:11
Alignment explanation
Indices: 101714347--101714399 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
101714337 TATACTAAAT
101714347 AAATAATAATA
1 AAATAATAATA
101714358 AAATAATAAT-
1 AAATAATAATA
* *
101714368 AAATATCTCATTA
1 AAATA-AT-AATA
*
101714381 AAATATTAATA
1 AAATAATAATA
101714392 AAATAATA
1 AAATAATA
101714400 TTTATCTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.15
11 21 0.62
12 3 0.09
13 5 0.15
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
AAATAATAATA
Found at i:101714406 original size:31 final size:33
Alignment explanation
Indices: 101714347--101714412 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
101714337 TATACTAAAT
*
101714347 AAATAATAATAAAATAATAATAAATATCTCATTA
1 AAATAATAATAAAATAATAAT-AATATCTAATTA
* *
101714381 AAATATTAATAAAATAAT-AT-TTATCTAATTA
1 AAATAATAATAAAATAATAATAATATCTAATTA
101714412 A
1 A
101714413 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 10 0.34
33 2 0.07
34 17 0.59
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (33 bp):
AAATAATAATAAAATAATAATAATATCTAATTA
Found at i:101715555 original size:7 final size:7
Alignment explanation
Indices: 101715543--101715599 Score: 96
Period size: 7 Copynumber: 8.0 Consensus size: 7
101715533 GATATTCTTC
101715543 AGGGTTT
1 AGGGTTT
101715550 AGGGTTTT
1 AGGG-TTT
101715558 AGGGTTT
1 AGGGTTT
101715565 AGGGTTT
1 AGGGTTT
101715572 AGGGTTT
1 AGGGTTT
*
101715579 AGAGTTT
1 AGGGTTT
101715586 AGGGTTT
1 AGGGTTT
101715593 AGGGTTT
1 AGGGTTT
101715600 GATTTAGATT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
7 40 0.85
8 7 0.15
ACGTcount: A:0.16, C:0.00, G:0.40, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:101715585 original size:21 final size:21
Alignment explanation
Indices: 101715543--101715606 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
101715533 GATATTCTTC
*
101715543 AGGGTTTAGGGTTTTAGGGTTT
1 AGGGTTTAGGG-TTTAGAGTTT
101715565 AGGGTTTAGGGTTTAGAGTTT
1 AGGGTTTAGGGTTTAGAGTTT
101715586 AGGGTTTAGGGTTT-GA-TTT
1 AGGGTTTAGGGTTTAGAGTTT
101715605 AG
1 AG
101715607 ATTCTTAGGC
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
19 5 0.12
20 2 0.05
21 23 0.56
22 11 0.27
ACGTcount: A:0.17, C:0.00, G:0.39, T:0.44
Consensus pattern (21 bp):
AGGGTTTAGGGTTTAGAGTTT
Found at i:101716123 original size:24 final size:24
Alignment explanation
Indices: 101716095--101716146 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
101716085 TTAGTAGGTC
* *
101716095 AAATAAAATATGCTAATAAATGCT
1 AAATAAAATATACTAATAAATACT
* *
101716119 AAATATATTATACTAATAAATACT
1 AAATAAAATATACTAATAAATACT
101716143 AAAT
1 AAAT
101716147 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAAATATACTAATAAATACT
Found at i:101722804 original size:44 final size:44
Alignment explanation
Indices: 101722722--101722805 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
101722712 TTGATTTGAG
* * *
101722722 AAAAGGGAAAGACCATGATTGAAAGATATCATGGCATTATATTC
1 AAAAAGGAAAGAACATGATTGAAAGATATCATGACATTATATTC
*
101722766 AAAAAGGAAAGAACATGGTTGAAAGATA-CAATGACATTAT
1 AAAAAGGAAAGAACATGATTGAAAGATATC-ATGACATTAT
101722806 TTTAGGATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 1 0.03
44 34 0.97
ACGTcount: A:0.48, C:0.10, G:0.20, T:0.23
Consensus pattern (44 bp):
AAAAAGGAAAGAACATGATTGAAAGATATCATGACATTATATTC
Found at i:101724238 original size:127 final size:127
Alignment explanation
Indices: 101724000--101724238 Score: 304
Period size: 127 Copynumber: 1.9 Consensus size: 127
101723990 TTATTTCAAT
*
101724000 TTTAAAAGGATATTTGGTTATTTAGGATCACAAGAAAAATCGAAGCCCAGTAAGTTAGGGTACAA
1 TTTAAAAGGATATTTGGTTATTTAGGATAACAAGAAAAATCGAAGCCCAGTAAGTTAGGGTACAA
* * * * ***
101724065 TTTCTCGAATTTCCTAAATATAGAATATTACCTTTATTTTTGAAATTTTATGGGTTTGGAAA
66 TTTCTCGAATTTCCAAAATACAAAATATTACCTTCATTTACAAAATTTTATGGGTTTGGAAA
* * *
101724127 TTTAAAAGGATATTTTGTTATTTAGGTTTAACGAG-AAAATCG-AGACCCAGTAAGTTAGGGTAC
1 TTTAAAAGGATATTTGGTTATTTAGG-ATAACAAGAAAAATCGAAG-CCCAGTAAGTTAGGGTAC
* **
101724190 AATTTCTCGAATTTCCAAAATGCAAAATATTGTC-TCATTTAACAAAATT
64 AATTTCTCGAATTTCCAAAATACAAAATATTACCTTCATTT-ACAAAATT
101724239 CCATTTTGAA
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
126 7 0.07
127 83 0.87
128 5 0.05
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (127 bp):
TTTAAAAGGATATTTGGTTATTTAGGATAACAAGAAAAATCGAAGCCCAGTAAGTTAGGGTACAA
TTTCTCGAATTTCCAAAATACAAAATATTACCTTCATTTACAAAATTTTATGGGTTTGGAAA
Found at i:101724924 original size:32 final size:33
Alignment explanation
Indices: 101724861--101724931 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 33
101724851 AGAAAATTTA
**
101724861 AAATAATACATATAAACAAAAATGATTTAATAT
1 AAATAATACATATAAACAAAAATGAAATAATAT
*
101724894 AAATAATACGTA-AAA-ATAAAATGAAATAATAT
1 AAATAATACATATAAACA-AAAATGAAATAATAT
*
101724926 ATATAA
1 AAATAA
101724932 CAGAAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 1 0.03
32 21 0.64
33 11 0.33
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.28
Consensus pattern (33 bp):
AAATAATACATATAAACAAAAATGAAATAATAT
Found at i:101731973 original size:26 final size:26
Alignment explanation
Indices: 101731937--101731995 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
101731927 NNNNNNNNNN
101731937 ATTATCATGGAACATTTACCTAACCT
1 ATTATCATGGAACATTTACCTAACCT
*
101731963 ATTATCATGGAATATTTACCTAACCT
1 ATTATCATGGAACATTTACCTAACCT
*
101731989 TTTATCA
1 ATTATCA
101731996 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (26 bp):
ATTATCATGGAACATTTACCTAACCT
Found at i:101737429 original size:64 final size:64
Alignment explanation
Indices: 101737328--101737512 Score: 262
Period size: 64 Copynumber: 2.9 Consensus size: 64
101737318 TAATACATAG
* *
101737328 GTCCTCTCTTGCACTTTCTTTTTTCTTCAATGACATTAGCTTGTCAACAAGTATATGTGAATAA
1 GTCCTCTCTTGCACTTTCTTTTGTCTTCAATAACATTAGCTTGTCAACAAGTATATGTGAATAA
* * *
101737392 GTCCTCTCTTGCACTTTCTTTTGTCTTCAATAACATTAGCTTGTCAACAAGCATATGTTAATAT
1 GTCCTCTCTTGCACTTTCTTTTGTCTTCAATAACATTAGCTTGTCAACAAGTATATGTGAATAA
* * * * * **
101737456 GTCATCTCTTACATTTTCTTTTGTCTTTAAGAACATTAGCTTGTCAATGAGTATATG
1 GTCCTCTCTTGCACTTTCTTTTGTCTTCAATAACATTAGCTTGTCAACAAGTATATG
101737513 CGAAGTTACT
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 108 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.43
Consensus pattern (64 bp):
GTCCTCTCTTGCACTTTCTTTTGTCTTCAATAACATTAGCTTGTCAACAAGTATATGTGAATAA
Found at i:101741697 original size:11 final size:11
Alignment explanation
Indices: 101741681--101741721 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
101741671 TGTGGAAAGA
101741681 GCTTGATTCTT
1 GCTTGATTCTT
101741692 GCTTGATT-TT
1 GCTTGATTCTT
101741702 AGCTTGATTCTT
1 -GCTTGATTCTT
*
101741714 GTTTGATT
1 GCTTGATT
101741722 AAAGGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 2 0.07
11 23 0.85
12 2 0.07
ACGTcount: A:0.12, C:0.12, G:0.20, T:0.56
Consensus pattern (11 bp):
GCTTGATTCTT
Found at i:101741708 original size:22 final size:22
Alignment explanation
Indices: 101741680--101741721 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
101741670 TTGTGGAAAG
101741680 AGCTTGATTCTTGCTTGATTTT
1 AGCTTGATTCTTGCTTGATTTT
*
101741702 AGCTTGATTCTTGTTTGATT
1 AGCTTGATTCTTGCTTGATT
101741722 AAAGGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.12, G:0.19, T:0.55
Consensus pattern (22 bp):
AGCTTGATTCTTGCTTGATTTT
Found at i:101742584 original size:17 final size:18
Alignment explanation
Indices: 101742557--101742590 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
101742547 TTTAATTAGA
*
101742557 TAAATTAATTTTTTCAAT
1 TAAATTAATTTTCTCAAT
101742575 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
101742591 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:101746819 original size:20 final size:20
Alignment explanation
Indices: 101746790--101746872 Score: 87
Period size: 20 Copynumber: 4.0 Consensus size: 20
101746780 CACACATACA
*
101746790 TATATATTACCATATATATT
1 TATATTTTACCATATATATT
*
101746810 TATATTTTACCATAAAATATAAT
1 TATATTTTACCAT---ATATATT
*
101746833 T-TATGTTACCATATATATT
1 TATATTTTACCATATATATT
* *
101746852 TATAATTTACCACATATATT
1 TATATTTTACCATATATATT
101746872 T
1 T
101746873 TACTAGATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
19 7 0.13
20 28 0.54
22 10 0.19
23 7 0.13
ACGTcount: A:0.40, C:0.11, G:0.01, T:0.48
Consensus pattern (20 bp):
TATATTTTACCATATATATT
Found at i:101747954 original size:12 final size:12
Alignment explanation
Indices: 101747937--101747961 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101747927 GCAGAGGTTA
101747937 TATATATATATT
1 TATATATATATT
101747949 TATATATATATT
1 TATATATATATT
101747961 T
1 T
101747962 CCCTATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATATATT
Found at i:101752784 original size:46 final size:46
Alignment explanation
Indices: 101752737--101753032 Score: 330
Period size: 46 Copynumber: 6.5 Consensus size: 46
101752727 GCTCTCTGAT
** * *
101752737 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG-AGACCTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA-ACATGAC
** * *
101752783 ATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
101752829 ATGAAATGAATAAGACCATGGTTGAACGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
101752875 A-GAAAATGAATAAGACCATAGTTGAAAGATACCATGGCAGCGTGAA
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
101752921 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** * * * * *
101752967 AAAAAATGCGTAAGACCATAGTTGAAAGACACTATGGCATCATGTC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
101753013 A--AAGATAAATAAGACCATGG
1 ATGAA-ATGAATAAGACCATGG
101753033 ATGGGAGACG
Statistics
Matches: 216, Mismatches: 30, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
44 2 0.01
45 13 0.06
46 199 0.92
47 2 0.01
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:101752991 original size:138 final size:137
Alignment explanation
Indices: 101752747--101753030 Score: 372
Period size: 138 Copynumber: 2.1 Consensus size: 137
101752737 ATGAAATGTG
* * ** *
101752747 TAAGACCATGGTTGAAAGATACCATGGAGACCTGATATGAAATGTGTAAGACTATGGTTGAAAGA
1 TAAGACCATAGTTGAAAGATACCATGGAGACCTGAAATGAAATGAATAAGACCATGGTTGAAAGA
* ** * * *
101752812 TACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAACGATACCATGGCAACATGACAG
66 TACCATGGCAACATGACAAAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACA-
*
101752877 AAAATGAA
130 AAAATAAA
*
101752885 TAAGACCATAGTTGAAAGATACCATGGCAG-CGTGAAATGAAATGAATAAGACCATGGTTGAAAG
1 TAAGACCATAGTTGAAAGATACCATGG-AGACCTGAAATGAAATGAATAAGACCATGGTTGAAAG
** * * *
101752949 ATACCATGGCAACATGACAAAAAATGCGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCA
65 ATACCATGGCAACATGACAAAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACA
*
101753014 AAGATAAA
130 AAAATAAA
101753022 TAAGACCAT
1 TAAGACCAT
101753031 GGATGGGAGA
Statistics
Matches: 126, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
137 15 0.12
138 109 0.87
139 2 0.02
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.20
Consensus pattern (137 bp):
TAAGACCATAGTTGAAAGATACCATGGAGACCTGAAATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAAAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACAA
AAATAAA
Found at i:101753312 original size:16 final size:17
Alignment explanation
Indices: 101753291--101753323 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101753281 ATGATGGTGC
101753291 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
101753307 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
101753324 TACTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:101761174 original size:105 final size:105
Alignment explanation
Indices: 101760992--101761203 Score: 397
Period size: 105 Copynumber: 2.0 Consensus size: 105
101760982 CTACTGTATA
*
101760992 TCGCCTTCATATTTATCAGAGGCTTGCATCTGTGATAACTCTACCTATTCTGTGTTTTATTGTTT
1 TCGCCTTCATATTTATCAGAGGCTTGCATCTGTGATAACTCTACCTACTCTGTGTTTTATTGTTT
*
101761057 TGTTTTCATGTTTCTTCCATTTTTGCTACATTCAGAAGCT
66 TGTTTTCATGTTTCTTCCATTTTTGCTACAGTCAGAAGCT
101761097 TCGCCTTCATATTTATCAGAGGCTTGCATCTGTGATAACTCTACCTACTCTGTGTTTTATTGTTT
1 TCGCCTTCATATTTATCAGAGGCTTGCATCTGTGATAACTCTACCTACTCTGTGTTTTATTGTTT
*
101761162 TGTTTTCGTGTTTCTTCCATTTTTGCTACAGTCAGAAGCT
66 TGTTTTCATGTTTCTTCCATTTTTGCTACAGTCAGAAGCT
101761202 TC
1 TC
101761204 ATTATTTATG
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (105 bp):
TCGCCTTCATATTTATCAGAGGCTTGCATCTGTGATAACTCTACCTACTCTGTGTTTTATTGTTT
TGTTTTCATGTTTCTTCCATTTTTGCTACAGTCAGAAGCT
Found at i:101776540 original size:28 final size:28
Alignment explanation
Indices: 101776466--101776593 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
101776456 CATGAGATTG
* * **
101776466 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
* *
101776495 GCACTAAGTTTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101776523 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
101776552 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101776580 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
101776594 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:101776555 original size:57 final size:57
Alignment explanation
Indices: 101776466--101776593 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 57
101776456 CATGAGATTG
* *
101776466 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTTTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
101776523 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
101776580 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
101776594 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:101783390 original size:8 final size:8
Alignment explanation
Indices: 101783373--101783411 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
101783363 CTAGATCGGT
*
101783373 AAAAGTCG
1 AAAAGCCG
101783381 AAAAGCCG
1 AAAAGCCG
101783389 AAAAGCCG
1 AAAAGCCG
101783397 AAAAGCCG
1 AAAAGCCG
101783405 AAAAGCC
1 AAAAGCC
101783412 TGCATTTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.51, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:101784064 original size:20 final size:20
Alignment explanation
Indices: 101784021--101784068 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
101784011 ACTGTTTTGT
101784021 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
101784041 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
101784060 TAT-GGCCAA
1 TATGGGCCAA
101784069 GGCCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:101794684 original size:55 final size:54
Alignment explanation
Indices: 101794596--101794851 Score: 226
Period size: 55 Copynumber: 4.8 Consensus size: 54
101794586 CATTAGGGTT
*
101794596 TAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
101794651 TAAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGCC
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAG-G
* * * * *
101794707 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGATGAG-TTCATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGG
* * * *
101794759 CAAGGATACCATGTAAGACCACGTCGAGACATGGCAA-TGGTAAGTTTC-AA--
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * * * *
101794809 -AAGGATACCACGTATGACCATGACAAGTCATGGAAATT-GTAAG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
101794852 GTACCTGTGT
Statistics
Matches: 166, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 34 0.20
50 1 0.01
52 7 0.04
53 36 0.22
54 12 0.07
55 72 0.43
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:101794803 original size:108 final size:110
Alignment explanation
Indices: 101794604--101794804 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
101794594 TTTAAGGATA
* *
101794604 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGATAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
101794669 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGCCAAAGGTC
66 CCACGTCAAGACATGGCAATGATAAGTTACTATAAGCCAAAGGTC
*
101794714 CCATGTAAGACCATGCCAAGGCATGGC-ATTGATGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGATAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
101794776 ACCACGTCGAGACATGGCAATGGTAAGTT
65 ACCACGTCAAGACATGGCAATGATAAGTT
101794805 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 6 0.07
110 27 0.33
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGATAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCACGTCAAGACATGGCAATGATAAGTTACTATAAGCCAAAGGTC
Found at i:101802360 original size:54 final size:52
Alignment explanation
Indices: 101802301--101802551 Score: 181
Period size: 55 Copynumber: 4.8 Consensus size: 52
101802291 AGGGTTTAAC
* * *
101802301 GATACCATGTAAGACCATGCCAAGGATGACAATTGGTAAGGTTTTTAAGGTAAG
1 GATACCATGTAAGACCATGCCAAGGATGGC-ATTGGTAA-GTTTATAAGGAAAG
* * * *
101802355 GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGCCAAAG
1 GATACCATGTAAGACCATGCCAAG-GATGGCATTGGTAAGTT--TATAAG-GAAAG
* * * *
101802411 G-TCCCATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAA-
1 GATACCATGTAAGACCATGCCAAGG-ATGGCATTGGTAAGTTTATAAGG-AAAG
* * * * * *
101802463 GATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAG-TT-TCA--AAAG
1 GATACCATGTAAGACCATGCCAAG-GATGGCATTGGTAAGTTTATAAGGAAAG
* * * *
101802512 GATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GATACCATGTAAGACCATGCCAAG-GATGGCATTGGTAAG
101802552 GTACCCGTGT
Statistics
Matches: 158, Mismatches: 30, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
48 3 0.02
49 35 0.22
51 2 0.01
52 2 0.01
53 40 0.25
54 30 0.19
55 42 0.27
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (52 bp):
GATACCATGTAAGACCATGCCAAGGATGGCATTGGTAAGTTTATAAGGAAAG
Found at i:101802503 original size:108 final size:109
Alignment explanation
Indices: 101802305--101802504 Score: 278
Period size: 108 Copynumber: 1.8 Consensus size: 109
101802295 TTTAACGATA
* ** * *
101802305 CCATGTAAGACCATGCCAAGGATGACAATTGGTAAGGTTTTTAAGGTAAGGATACCATGTAAGAC
1 CCATATAAGACCATGCCAAGGATGACAATTGGTAAGGTTCATAAGGCAAAGATACCATGTAAGAC
* *
101802370 CATGTCAAGACATGGCATTGATAAGTTACTATAAGCCAAAGGTC
66 CATGTCAAGACATGGAAATGATAAGTTACTATAAGCCAAAGGTC
* *
101802414 CCATATAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCATAAGGCAAAGATACCATGTAAGA
1 CCATATAAGACCATGCCAAGG-ATGACAATTGGTAAGGTTCATAAGGCAAAGATACCATGTAAGA
* *
101802477 CCATGTCGAGACATGGAAATGGTAAGTT
65 CCATGTCAAGACATGGAAATGATAAGTT
101802505 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 48 0.61
109 27 0.34
110 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (109 bp):
CCATATAAGACCATGCCAAGGATGACAATTGGTAAGGTTCATAAGGCAAAGATACCATGTAAGAC
CATGTCAAGACATGGAAATGATAAGTTACTATAAGCCAAAGGTC
Found at i:101802741 original size:16 final size:16
Alignment explanation
Indices: 101802720--101802750 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101802710 ATAAATTTGA
101802720 TTAAGTAAGTAAGTAC
1 TTAAGTAAGTAAGTAC
*
101802736 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
101802751 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAC
Found at i:101807254 original size:15 final size:16
Alignment explanation
Indices: 101807232--101807274 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
101807222 CATGGTATGT
101807232 ATGATATGCATATG-AC
1 ATGATATG-ATATGCAC
101807248 ATG-TATGATATGCAC
1 ATGATATGATATGCAC
101807263 ATGATATG-TATG
1 ATGATATGATATG
101807275 ATATGCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.20
15 13 0.52
16 7 0.28
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGATATGATATGCAC
Found at i:101807277 original size:9 final size:9
Alignment explanation
Indices: 101807227--101807279 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
101807217 ATAAACATGG
101807227 TATGTATGA
1 TATGTATGA
101807236 TATGCATATGA
1 TATG--TATGA
*
101807247 CATGTATGA
1 TATGTATGA
*
101807256 TATGCACATGA
1 TATG--TATGA
101807267 TATGTATGA
1 TATGTATGA
101807276 TATG
1 TATG
101807280 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:101807287 original size:20 final size:20
Alignment explanation
Indices: 101807221--101807287 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
101807211 ATTTTGATAA
*
101807221 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
101807241 ATATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
101807261 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
101807281 ACATGAT
1 ACATGAT
101807288 GTATTCGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:101807395 original size:24 final size:24
Alignment explanation
Indices: 101807336--101807442 Score: 162
Period size: 24 Copynumber: 4.4 Consensus size: 24
101807326 GGAGGAAGTG
101807336 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
101807360 GATAAAGGGCTTATGCCTCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
101807385 TAAAAGGGCTTATGCCCCCGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
101807409 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
101807432 TAAAAGAGGCT
1 TAAAAG-GGCT
101807443 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 17 0.23
24 36 0.48
25 22 0.29
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:101807408 original size:49 final size:47
Alignment explanation
Indices: 101807336--101807442 Score: 160
Period size: 49 Copynumber: 2.2 Consensus size: 47
101807326 GGAGGAAGTG
*
101807336 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGA-AAAGGGCTT-TGCCCCAGTTAT
* *
101807385 TAAAAGGGCTTATGCCCCCGTTATTAAAAGGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
101807432 TAAAAGAGGCT
1 TAAAAG-GGCT
101807443 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
47 17 0.31
48 13 0.24
49 24 0.44
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
Found at i:101814765 original size:8 final size:8
Alignment explanation
Indices: 101814754--101814781 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
101814744 TTAAAGCGGT
101814754 AAATGCCG
1 AAATGCCG
101814762 AAATGCCG
1 AAATGCCG
101814770 AAATGCCG
1 AAATGCCG
101814778 AAAT
1 AAAT
101814782 TCTGGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (8 bp):
AAATGCCG
Found at i:101815320 original size:20 final size:20
Alignment explanation
Indices: 101815295--101815333 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
101815285 TAAACATGGT
*
101815295 ATGTATGATATGCATATGAC
1 ATGTATGATATGCACATGAC
101815315 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
101815334 TGTATTCGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:101815446 original size:23 final size:24
Alignment explanation
Indices: 101815383--101815488 Score: 171
Period size: 23 Copynumber: 4.4 Consensus size: 24
101815373 GGAAGAAGTG
101815383 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
101815407 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
101815432 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
101815455 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
101815478 TAAAAGAGGCT
1 TAAAAG-GGCT
101815489 AGGCCTCCAG
Statistics
Matches: 78, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
23 41 0.53
24 14 0.18
25 23 0.29
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:101815499 original size:48 final size:48
Alignment explanation
Indices: 101815383--101815511 Score: 172
Period size: 46 Copynumber: 2.6 Consensus size: 48
101815373 GGAAGAAGTG
101815383 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGC-TATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
* *
101815432 TAAAAGGGCTTTGCCCCAGTTATTA-AAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
*
101815478 TAAAAGAGGCTAGGCCTCCAGTTCTATGATAAAG
1 TAAAAG-GGCTATGCC-CCAG-T-TATGATAAAG
101815512 CAGCTATGCT
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
46 18 0.26
47 16 0.23
48 18 0.26
49 10 0.14
50 4 0.06
51 4 0.06
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (48 bp):
TAAAAGGGCTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
Found at i:101815731 original size:31 final size:31
Alignment explanation
Indices: 101815696--101815759 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
101815686 AGTTTACAGT
*
101815696 AAAGGCTTCGGCCCAGTAATCTGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
101815727 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
101815758 AA
1 AA
101815760 TATGGAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:101816948 original size:68 final size:68
Alignment explanation
Indices: 101816868--101817003 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
101816858 AAAAGAAGGG
101816868 AAAGAACTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTCCATG
1 AAAGAACTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTCCATG
101816933 AGA
66 AGA
*
101816936 AAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTCCATG
1 AAAGAACTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTCCATG
101817001 AGA
66 AGA
101817004 TTCATGCATA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.30, C:0.12, G:0.29, T:0.29
Consensus pattern (68 bp):
AAAGAACTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTCCATG
AGA
Found at i:101818203 original size:40 final size:40
Alignment explanation
Indices: 101818145--101818348 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
101818135 CGGATGATAA
* *
101818145 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
101818185 TCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
101818225 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
101818265 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
101818305 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
101818345 CCGG
1 CCGG
101818349 TTAAAGCCCG
Statistics
Matches: 150, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 149 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:101827529 original size:30 final size:30
Alignment explanation
Indices: 101827494--101827552 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
101827484 AAGAAAATCA
* *
101827494 AATAAAGAAATCCAAGATAGAGAAACCCAG
1 AATAAAGAAATCCAAAATAAAGAAACCCAG
101827524 AATAAAGAAATCCAAAATAAAGAAACCCA
1 AATAAAGAAATCCAAAATAAAGAAACCCA
101827553 AGATACGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.61, C:0.17, G:0.12, T:0.10
Consensus pattern (30 bp):
AATAAAGAAATCCAAAATAAAGAAACCCAG
Found at i:101827532 original size:15 final size:14
Alignment explanation
Indices: 101827492--101827553 Score: 70
Period size: 15 Copynumber: 4.2 Consensus size: 14
101827482 ACAAGAAAAT
*
101827492 CAAATAAAGAAATC
1 CAAATAAAGAAACC
*
101827506 CAAGATAGAGAAACC
1 CAA-ATAAAGAAACC
101827521 CAGAATAAAGAAATCC
1 CA-AATAAAGAAA-CC
*
101827537 AAAATAAAGAAACC
1 CAAATAAAGAAACC
101827551 CAA
1 CAA
101827554 GATACGATAC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
14 7 0.17
15 29 0.73
16 4 0.10
ACGTcount: A:0.61, C:0.18, G:0.11, T:0.10
Consensus pattern (14 bp):
CAAATAAAGAAACC
Found at i:101831492 original size:27 final size:26
Alignment explanation
Indices: 101831444--101831503 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
101831434 GCGAGGCTGC
*
101831444 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
101831471 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
101831497 CAGATAT
1 CAGATAT
101831504 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:101831589 original size:67 final size:67
Alignment explanation
Indices: 101831504--101831813 Score: 476
Period size: 67 Copynumber: 4.6 Consensus size: 67
101831494 GAACAGATAT
* * ** * * * *
101831504 ATATATGTGGCGAAGCCACCAGATTACAACGAGGCTGGAAAATATTGTGACGAAGTCACCAAAAT
1 ATATATGTGGCGAGGCCACCAGATTGCAACGAGGCTGCCAGATATTGTAACGAAGTCACCAGAAC
101831569 AG
66 AG
* * *
101831571 ACATATGTGGCGAGGCCACCAAATTGCAACGAGGCTGCTAGATATTGTAACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAACGAGGCTGCCAGATATTGTAACGAAGTCACCAGAAC
101831636 AG
66 AG
*
101831638 ATATATGTGGCGAGGCCACCATATTGCAACGAGGCTGCCAGATATTGTAACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAACGAGGCTGCCAGATATTGTAACGAAGTCACCAGAAC
101831703 AG
66 AG
*
101831705 ATATATGTGGCGAGGCCACCATATTGCAACGAGGCTGCCAGATATTGTAACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAACGAGGCTGCCAGATATTGTAACGAAGTCACCAGAAC
101831770 AG
66 AG
** *
101831772 ATATATGTGGCGAGGCCACCAGATTGCAGTGAGGCTACCAGA
1 ATATATGTGGCGAGGCCACCAGATTGCAACGAGGCTGCCAGA
101831814 ATGCTTCCTC
Statistics
Matches: 226, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 226 1.00
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAACGAGGCTGCCAGATATTGTAACGAAGTCACCAGAAC
AG
Found at i:101832468 original size:27 final size:27
Alignment explanation
Indices: 101832438--101832637 Score: 276
Period size: 27 Copynumber: 7.4 Consensus size: 27
101832428 GGGGCAAAAT
* * *
101832438 GGTAATTTTACTCC-ACAAGGGTATCTC
1 GGTAATTCTAC-CCTACAGGGGTATTTC
101832465 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
101832492 AGTATTTCTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
101832519 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
101832546 AGTAATTCTACCCTACAGGGGTCTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
101832573 GGTAATTCTACCCTACAGGGGTCTTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
101832600 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
101832627 GGTAATTCTAC
1 GGTAATTCTAC
101832638 AACTTAACAA
Statistics
Matches: 154, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 152 0.99
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:101846836 original size:12 final size:12
Alignment explanation
Indices: 101846819--101846843 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101846809 ATATGTTTAT
101846819 TAATTTATAATA
1 TAATTTATAATA
101846831 TAATTTATAATA
1 TAATTTATAATA
101846843 T
1 T
101846844 TTGTATTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATTTATAATA
Found at i:101846985 original size:23 final size:23
Alignment explanation
Indices: 101846950--101846996 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
101846940 GATTATGAAG
* *
101846950 ATGTTTTCGAACATGTTCATTTA
1 ATGTTTACAAACATGTTCATTTA
101846973 ATGTTTACAAACATGTTCATTTA
1 ATGTTTACAAACATGTTCATTTA
101846996 A
1 A
101846997 CTTAAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (23 bp):
ATGTTTACAAACATGTTCATTTA
Found at i:101847005 original size:23 final size:23
Alignment explanation
Indices: 101846959--101847005 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
101846949 GATGTTTTCG
**
101846959 AACATGTTCATTTAATGTTTACA
1 AACATGTTCATTTAATGTAAACA
101846982 AACATGTTCATTTAACT-TAAACA
1 AACATGTTCATTTAA-TGTAAACA
101847005 A
1 A
101847006 TCAAACATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.38
Consensus pattern (23 bp):
AACATGTTCATTTAATGTAAACA
Found at i:101854965 original size:67 final size:67
Alignment explanation
Indices: 101854883--101855044 Score: 243
Period size: 67 Copynumber: 2.4 Consensus size: 67
101854873 GTGGCTGGTC
*
101854883 CATACTATTGGCAGTTTATCTACATTACCATTACTATTGGCTTATCCATAATACTAGCAGCTTGT
1 CATA-TATTGGCAGTTTATCTACATTACCATTACTAGTGGCTTATCCATAATACTAGCAGCTTGT
101854948 TTG
65 TTG
* * *
101854951 CATATATTGGCAGTTTATCTACATTACCATTATTGGTGGCTTGTCCATAATACTAGCAGCTTGTT
1 CATATATTGGCAGTTTATCTACATTACCATTACTAGTGGCTTATCCATAATACTAGCAGCTTGTT
101855016 TG
66 TG
* ** *
101855018 CACATATTGATAGTTTATCTGCATTAC
1 CATATATTGGCAGTTTATCTACATTAC
101855045 TATACTGGTG
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
67 82 0.95
68 4 0.05
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (67 bp):
CATATATTGGCAGTTTATCTACATTACCATTACTAGTGGCTTATCCATAATACTAGCAGCTTGTT
TG
Found at i:101857510 original size:18 final size:18
Alignment explanation
Indices: 101857487--101857526 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
101857477 TATTTAGTAA
101857487 ATATATTAAAATATTAAT
1 ATATATTAAAATATTAAT
* *
101857505 ATATATTAATATTTTAAT
1 ATATATTAAAATATTAAT
101857523 ATAT
1 ATAT
101857527 TTACTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATATTAAAATATTAAT
Found at i:101858211 original size:19 final size:19
Alignment explanation
Indices: 101858189--101858229 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
101858179 CTATAAAAGT
*
101858189 TATTAAAGATTTAAAAAAA
1 TATTAAACATTTAAAAAAA
*
101858208 TATTAAACATTTAAAAATA
1 TATTAAACATTTAAAAAAA
101858227 TAT
1 TAT
101858230 ATAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
TATTAAACATTTAAAAAAA
Found at i:101858324 original size:19 final size:20
Alignment explanation
Indices: 101858287--101858324 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
101858277 AATATATATT
101858287 TAAAACTTATTAGAAAATTA
1 TAAAACTTATTAGAAAATTA
*
101858307 TAAAAGTTATTA-AAAATT
1 TAAAACTTATTAGAAAATT
101858325 TGATCAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (20 bp):
TAAAACTTATTAGAAAATTA
Found at i:101858371 original size:22 final size:20
Alignment explanation
Indices: 101858334--101858373 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
101858324 TTGATCAAAT
*
101858334 ATAAAAAATTATAATTTTTC
1 ATAAAAAATTAAAATTTTTC
101858354 ATAAAAAATTTTAAAATTTT
1 ATAAAAAA--TTAAAATTTT
101858374 ATAATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
22 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAAAAAATTAAAATTTTTC
Found at i:101858377 original size:20 final size:19
Alignment explanation
Indices: 101858333--101858377 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
101858323 TTTGATCAAA
*
101858333 TATAAAAAATTATAATTTT
1 TATAAAAAATTATAAATTT
*
101858352 TCATAAAAAATTTTAAAATTT
1 T-ATAAAAAATTAT-AAATTT
101858373 TATAA
1 TATAA
101858378 TATTTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 15 0.68
21 6 0.27
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
TATAAAAAATTATAAATTT
Found at i:101858384 original size:18 final size:19
Alignment explanation
Indices: 101858361--101858456 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 19
101858351 TTCATAAAAA
101858361 ATTTTAA-AATTTTATAAT
1 ATTTTAATAATTTTATAAT
101858379 ATTTTAATAAGTTTTA-AAT
1 ATTTTAATAA-TTTTATAAT
* *
101858398 -TTTTTATATTTTTTATCAA-
1 ATTTTAATA-ATTTTAT-AAT
*
101858417 ATTTTAATATTTTTATAAT
1 ATTTTAATAATTTTATAAT
*
101858436 -TTCATAATAATTTTATTAAT
1 ATT-TTAATAATTTTA-TAAT
101858456 A
1 A
101858457 CAAAATTTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
18 23 0.37
19 22 0.35
20 18 0.29
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (19 bp):
ATTTTAATAATTTTATAAT
Found at i:101858411 original size:28 final size:29
Alignment explanation
Indices: 101858359--101858435 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 29
101858349 TTTTCATAAA
*
101858359 AAATTTTAAA-ATTTTATAATATTTTAAT-
1 AAATTTTAAATTTTTTATAATATTTT-ATC
* *
101858387 AAGTTTTAAATTTTTTAT-ATTTTTTATC
1 AAATTTTAAATTTTTTATAATATTTTATC
101858415 AAATTTT-AATATTTTTATAAT
1 AAATTTTAAAT-TTTTTATAAT
101858436 TTCATAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
28 28 0.68
29 8 0.20
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (29 bp):
AAATTTTAAATTTTTTATAATATTTTATC
Found at i:101858437 original size:9 final size:9
Alignment explanation
Indices: 101858370--101858437 Score: 50
Period size: 9 Copynumber: 7.2 Consensus size: 9
101858360 AATTTTAAAA
101858370 TTTTATAAT
1 TTTTATAAT
*
101858379 ATTTTAATAAG
1 -TTTT-ATAAT
101858390 TTTTA-AATT
1 TTTTATAA-T
*
101858399 TTTTATATT
1 TTTTATAAT
*
101858408 TTTTATCAAA
1 TTTTAT-AAT
101858418 TTTTA-ATAT
1 TTTTATA-AT
101858427 TTTTATAAT
1 TTTTATAAT
101858436 TT
1 TT
101858438 CATAATAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
8 3 0.07
9 23 0.50
10 16 0.35
11 4 0.09
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:101870275 original size:28 final size:28
Alignment explanation
Indices: 101870212--101870421 Score: 368
Period size: 28 Copynumber: 7.5 Consensus size: 28
101870202 ATATTAAGTC
*
101870212 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
101870239 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
101870267 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
101870295 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
101870323 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
101870351 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
101870379 CGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
101870408 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101870422 CAATCTCATG
Statistics
Matches: 177, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.12
28 136 0.77
29 19 0.11
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:101873741 original size:26 final size:26
Alignment explanation
Indices: 101873712--101873762 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
101873702 AACAATTTTT
101873712 TATTCAATTAATACTAACAAAAAAAG
1 TATTCAATTAATACTAACAAAAAAAG
*
101873738 TATTCAATTAATATTAACAAAAAAA
1 TATTCAATTAATACTAACAAAAAAA
101873763 ATTATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (26 bp):
TATTCAATTAATACTAACAAAAAAAG
Found at i:101873768 original size:27 final size:26
Alignment explanation
Indices: 101873711--101873773 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
101873701 TAACAATTTT
101873711 TTATTCAATTAATACTAACAAAAAAA
1 TTATTCAATTAATACTAACAAAAAAA
* *
101873737 GTATTCAATTAATATTAACAAAAAAAA
1 TTATTCAATTAATACTAAC-AAAAAAA
*
101873764 TTATTAAATT
1 TTATTCAATT
101873774 TTTTTCACAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 17 0.53
27 15 0.47
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (26 bp):
TTATTCAATTAATACTAACAAAAAAA
Found at i:101874434 original size:13 final size:13
Alignment explanation
Indices: 101874416--101874441 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101874406 TTCCCCCCAT
101874416 TTTTTTCTCTTCA
1 TTTTTTCTCTTCA
101874429 TTTTTTCTCTTCA
1 TTTTTTCTCTTCA
101874442 GCAGCGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTTTCTCTTCA
Found at i:101881558 original size:93 final size:93
Alignment explanation
Indices: 101881446--101881617 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
101881436 CGCCCATAAG
* * * *
101881446 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAG-TTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTC
101881510 AACGAGTTCGGATGCCTAGTTACATCTCT
65 AACGAGTTCGGATGCCTAGTTACATCTCT
*
101881539 CGAACTCGGACTCAACTCAACAAGTTCGGACATTTACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
101881604 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
101881618 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:101881614 original size:46 final size:46
Alignment explanation
Indices: 101881439--101881614 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
101881429 TGTAACCCGC
* * **
101881439 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTTACAT
* *
101881485 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACAT
*
101881535 CTC-T---CGAACTCGGACTCAACTCAACAAGTTCGGACATTTACAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
*
101881578 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
101881615 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 1 0.01
45 2 0.02
46 60 0.55
47 28 0.26
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:101881922 original size:115 final size:114
Alignment explanation
Indices: 101881720--101881944 Score: 441
Period size: 115 Copynumber: 2.0 Consensus size: 114
101881710 ACGGAATGCT
101881720 GATACCGATACTCGGTAGTATTTCACATTTTCCAAGTATATCACATAATTTGACATATTATCAAA
1 GATACCGATACTCGGTAGTATTTCACATTTTCCAAGTATATCACATAATTTGACATATTATCAAA
101881785 CAATTGTCACAAGTATGATATTTCATAATAATTATCATATCATTTNTGCC
66 CAATTGTCACAAGTATGATATTTCATAATAATTATCATATCATTT-TGCC
101881835 GATACCGATACTCGGTAGTATTTCACATTTTCCAAGTATATCACATAATTTGACATATTATCAAA
1 GATACCGATACTCGGTAGTATTTCACATTTTCCAAGTATATCACATAATTTGACATATTATCAAA
101881900 CAATTGTCACAAGTATGATATTTCATAATAATTATCATATCATTT
66 CAATTGTCACAAGTATGATATTTCATAATAATTATCATATCATTT
101881945 AAATAACATT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 110 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (114 bp):
GATACCGATACTCGGTAGTATTTCACATTTTCCAAGTATATCACATAATTTGACATATTATCAAA
CAATTGTCACAAGTATGATATTTCATAATAATTATCATATCATTTTGCC
Found at i:101884162 original size:30 final size:30
Alignment explanation
Indices: 101884118--101884206 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
101884108 CAAAGATAAC
101884118 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
101884147 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * * *
101884177 AAGAGATCTAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
101884207 CGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.18
30 38 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:101884166 original size:15 final size:15
Alignment explanation
Indices: 101884118--101884197 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
101884108 CAAAGATAAC
*
101884118 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
101884132 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
101884147 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
101884162 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
101884177 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
101884192 AAGAAA
1 AAGAAA
101884198 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:101884206 original size:15 final size:15
Alignment explanation
Indices: 101884129--101884206 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
101884119 AGAAAACCGA
101884129 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
101884144 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
101884158 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
101884173 AATAAAGAGATCTAGG
1 -ATAAAGAAATCCAAG
*
101884189 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
101884204 ATA
1 ATA
101884207 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 4 0.08
15 43 0.86
16 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:101890460 original size:23 final size:22
Alignment explanation
Indices: 101890433--101890495 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
101890423 ATGCAACCTT
*
101890433 AGATATGATATGTAAATATTAG
1 AGATATGATTTGTAAATATTAG
*
101890455 AAGATATGATTTTGT-AATCTTAG
1 -AGATATGA-TTTGTAAATATTAG
*
101890478 AGATTTGATTTGTAAATA
1 AGATATGATTTGTAAATA
101890496 GCTTTTAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 5 0.15
22 10 0.29
23 15 0.44
24 4 0.12
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.41
Consensus pattern (22 bp):
AGATATGATTTGTAAATATTAG
Found at i:101893138 original size:15 final size:15
Alignment explanation
Indices: 101893118--101893147 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101893108 CATTTTATTT
*
101893118 ATATTAGGATAATTA
1 ATATTAAGATAATTA
101893133 ATATTAAGATAATTA
1 ATATTAAGATAATTA
101893148 TTATGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:101897420 original size:27 final size:27
Alignment explanation
Indices: 101897390--101897567 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
101897380 ATATTGAGTC
* * * *
101897390 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
101897417 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
101897444 CGCACACTTAGTGCTACATAGTCAATCT
1 CGCACACTTAGTGCTACATAGTCAA-AT
** * *
101897472 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
101897499 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
101897526 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
101897553 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
101897568 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:101897529 original size:82 final size:81
Alignment explanation
Indices: 101897411--101897566 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
101897401 TGCTATATAA
* * *
101897411 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAA-ATCGCA
101897476 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
101897493 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
101897557 CACTTAGTGC
65 CACTTAGTGC
101897567 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:101907006 original size:48 final size:48
Alignment explanation
Indices: 101906903--101907009 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
101906893 TGATATGTGT
* * * **
101906903 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACAAGCATCGACCTCGAGACATACAA
* *
101906951 GCCAGTGTAAGACATGTCTGGGACAAGCATTGACCTCGCA-ACATACAA
1 GCTAGTGTAAGACATGTCTGGGACAAGCATCGACCTCG-AGACATACAA
101906999 GCTAGTGTAAG
1 GCTAGTGTAAG
101907010 GCCTATTTGG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
48 49 0.98
49 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACAAGCATCGACCTCGAGACATACAA
Found at i:101907148 original size:49 final size:49
Alignment explanation
Indices: 101907045--101907167 Score: 138
Period size: 49 Copynumber: 2.5 Consensus size: 49
101907035 TGTGGTGTGT
* * *
101907045 CAGTGTAAGACCTGTCTGGGACATGGCACCGACACCAATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATAGCACCGACACCAATACATGAAAGC
* * * ** **
101907094 TAGTGTAAGACCTGTCTGGGACATAGCATCGGCTTCGCTACATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATAGCACCGACACCAATACATGAAAGC
*
101907143 CAGTGTAAGACCATCTCTGGGACAT
1 CAGTGTAAGACC-TGTCTGGGACAT
101907168 GGTGTCGGCA
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
49 50 0.82
50 11 0.18
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATAGCACCGACACCAATACATGAAAGC
Found at i:101908924 original size:49 final size:47
Alignment explanation
Indices: 101908819--101908991 Score: 206
Period size: 49 Copynumber: 3.6 Consensus size: 47
101908809 AGATGCCAAC
* * *
101908819 GCCATGTCCCAGACATGGTCTTACACTGGCT-AGCATATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGTTCA-TATATCAAGGTCGAT
*
101908867 GTCATGTCCCAGACAGGTCTTACACTGGGATTCATATATCAAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACT-GG-TTCATATATCAAGGTCGAT
* * *
101908916 GCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATC-GGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGG-T-TCATATATCAAG-GTCGAT
101908965 GCCATGTCCCAGACAGGTCTTACACTG
1 GCCATGTCCCAGACAGGTCTTACACTG
101908992 ACACACAACA
Statistics
Matches: 110, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
47 11 0.10
48 20 0.18
49 78 0.71
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGGTTCATATATCAAGGTCGAT
Found at i:101909822 original size:20 final size:18
Alignment explanation
Indices: 101909785--101909835 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
101909775 CTATAACAAC
101909785 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
101909802 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
101909822 TTACAACTTTACAA
1 TCACAA-TTTACAA
101909836 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:101916875 original size:47 final size:48
Alignment explanation
Indices: 101916819--101917033 Score: 198
Period size: 47 Copynumber: 4.6 Consensus size: 48
101916809 TGGGTAAGGT
101916819 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCT-TAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCTAA
* *
101916866 GTCGATGCCATGTCCCAAACATGGTCTTACACT-GACT-ATCATCTCGT-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCAT-ATCTC-TAA
* * * * ** * *
101916914 GCCAATG-CATGTCCCAGACAT-GTCTTTCACTACCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCTAA
* * *
101916960 GCCGATG-CATGTCCCAAACAT-GTCTTA-ACTAGCTCTTGTCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCTAA
*
101917004 TTCCGATGCCATGTCCCAGACATGGTCTTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTA
101917034 TACTGGCTTT
Statistics
Matches: 137, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 1 0.01
45 17 0.12
46 55 0.40
47 57 0.42
48 6 0.04
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCTAA
Found at i:101917019 original size:139 final size:141
Alignment explanation
Indices: 101916819--101917083 Score: 349
Period size: 139 Copynumber: 1.9 Consensus size: 141
101916809 TGGGTAAGGT
* *
101916819 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTTAAGTCGATGCCATGTCCCAA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAA
* * *
101916884 ACATGGTCTTACACTGACTATCAT-CTCGTAGCCAATGCATGTCCCAGACATGTCTTTCACTACC
66 ACATGGTCTTACACTGACTATCATAAT-GTAGCCAATGCAAGTCCCAGACATGTCTTACACTACC
101916948 TTACGTCTCGAG
130 TTACGTCTCGAG
* * *
101916960 GCCGATG-CATGTCCCAAACAT-GTCTTA-ACTAGCTCTTGTCTCAATTCCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGT-CGATGCCATGTCCCA
* * * * * **
101917022 GACATGGTCTTATACTGGCTTTCATAATGTGGCTGATGCAAGTCCCAGACATGTCTTACACT
65 AACATGGTCTTACACTGACTATCATAATGTAGCCAATGCAAGTCCCAGACATGTCTTACACT
101917084 GGCTCATGCA
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
138 15 0.14
139 71 0.66
140 14 0.13
141 7 0.07
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAA
ACATGGTCTTACACTGACTATCATAATGTAGCCAATGCAAGTCCCAGACATGTCTTACACTACCT
TACGTCTCGAG
Found at i:101917032 original size:93 final size:95
Alignment explanation
Indices: 101916819--101917033 Score: 228
Period size: 93 Copynumber: 2.3 Consensus size: 95
101916809 TGGGTAAGGT
* * * *
101916819 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTTAAGTCGATGCCATGTCCCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCACATCTGAAGCCGATGCCATGTCCCAA
*
101916884 ACATGGTCTTACACTGACTATCATCTCGTA
66 ACATGGTCTTACACTGACTATCATCTCATA
* * * * *
101916914 GCCAATG-CATGTCCCAGACAT-GTCTTTCACTACCTTACGTCTCGAGGCCGATG-CATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCACATCT-GAAGCCGATGCCATGTCCCA
* **
101916976 AACAT-GTCTTA-ACT-AGCTCTTGTCTCA-A
65 AACATGGTCTTACACTGA-CTATCATCTCATA
*
101917004 TTCCGATGCCATGTCCCAGACATGGTCTTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTA
101917034 TACTGGCTTT
Statistics
Matches: 99, Mismatches: 16, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
90 2 0.02
91 15 0.15
92 20 0.20
93 35 0.35
94 21 0.21
95 6 0.06
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCACATCTGAAGCCGATGCCATGTCCCAA
ACATGGTCTTACACTGACTATCATCTCATA
Found at i:101918418 original size:10 final size:11
Alignment explanation
Indices: 101918400--101918429 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
101918390 TTTTCCTAAG
101918400 ATATGAATTGA
1 ATATGAATTGA
101918411 AT-TGAATTGA
1 ATATGAATTGA
101918421 ATATGAATT
1 ATATGAATT
101918430 TTATTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (11 bp):
ATATGAATTGA
Found at i:101918439 original size:21 final size:21
Alignment explanation
Indices: 101918400--101918441 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
101918390 TTTTCCTAAG
*
101918400 ATATGAATTGAATTGAATTGA
1 ATATGAATTGAATTAAATTGA
**
101918421 ATATGAATTTTATTAAATTGA
1 ATATGAATTGAATTAAATTGA
101918442 GCTAAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (21 bp):
ATATGAATTGAATTAAATTGA
Found at i:101918962 original size:24 final size:24
Alignment explanation
Indices: 101918917--101918963 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
101918907 TCCAGAGTTT
*
101918917 CTCGTTAATGGCTCTTCAGAGCTA
1 CTCGTTAATGGCTCTACAGAGCTA
*
101918941 CTCGTTATTGGCTC-ACATGAGCT
1 CTCGTTAATGGCTCTACA-GAGCT
101918964 TCCTGATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (24 bp):
CTCGTTAATGGCTCTACAGAGCTA
Found at i:101929574 original size:26 final size:26
Alignment explanation
Indices: 101929487--101929577 Score: 67
Period size: 26 Copynumber: 3.4 Consensus size: 26
101929477 AATAATATAA
* * *
101929487 ATTTTAAAGAAATAATATATGGAAGAAA
1 ATTTAAAACAAATAATATAT-GAAG-AG
* * *
101929515 ATTTAAAACAAGTAATA-ATAAAAATG
1 ATTTAAAACAAATAATATATGAAGA-G
* * *
101929541 GTTCAAAATAAATAATATATGAAGAG
1 ATTTAAAACAAATAATATATGAAGAG
101929567 ATTTAAAACAA
1 ATTTAAAACAA
101929578 GTACAAATTT
Statistics
Matches: 46, Mismatches: 15, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
25 1 0.02
26 24 0.52
27 7 0.15
28 14 0.30
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.27
Consensus pattern (26 bp):
ATTTAAAACAAATAATATATGAAGAG
Found at i:101932255 original size:46 final size:46
Alignment explanation
Indices: 101932205--101932380 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
101932195 TGGTTGAGCA
101932205 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
101932251 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
101932296 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
101932344 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101932381 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:101932361 original size:93 final size:93
Alignment explanation
Indices: 101932202--101932373 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
101932192 GGATGGTTGA
* *
101932202 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101932267 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
101932295 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101932360 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
101932374 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:101938898 original size:23 final size:21
Alignment explanation
Indices: 101938854--101938912 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 21
101938844 ATGCAATCTT
* *
101938854 AGATATGATATGTAAATTTTAG
1 AGATATGATTTGT-AATATTAG
101938876 AAGATATGATTCTGTAATATTAG
1 -AGATATGATT-TGTAATATTAG
*
101938899 AGATTTGATTTGTA
1 AGATATGATTTGTA
101938913 GATAGCTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.12
22 9 0.28
23 16 0.50
24 3 0.09
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (21 bp):
AGATATGATTTGTAATATTAG
Found at i:101940879 original size:20 final size:18
Alignment explanation
Indices: 101940835--101940871 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
101940825 GATCAAGTCC
101940835 TTGTTAAGCAATTAAATA
1 TTGTTAAGCAATTAAATA
101940853 TTGTTAAGCAATTAAATA
1 TTGTTAAGCAATTAAATA
101940871 T
1 T
101940872 ATCTTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (18 bp):
TTGTTAAGCAATTAAATA
Found at i:101950872 original size:46 final size:46
Alignment explanation
Indices: 101950735--101950958 Score: 236
Period size: 46 Copynumber: 4.8 Consensus size: 46
101950725 ATTTGTGTGT
* * * ** **
101950735 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGTTATAA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACGA
* * * *
101950781 GAGCCAGTGTAAGACCATATCTGGGACATGGCATCGACATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGACGA
*
101950829 GAGCTAATGTAAGACATGTCTGGGACATGCATCGACCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACG-A
* *
101950876 -AGCTAGTGTAAGACATGTCTGGGACATGCATCG-GCTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCT-CGAGACGA
* *
101950921 TAGTTAGTGTAAGACTATGTCTGGGACATGGCATCGAC
1 GAGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGAC
101950959 ACTTTACCCA
Statistics
Matches: 149, Mismatches: 21, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
45 3 0.02
46 79 0.53
47 39 0.26
48 28 0.19
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACGA
Found at i:101954943 original size:43 final size:43
Alignment explanation
Indices: 101954895--101955151 Score: 376
Period size: 43 Copynumber: 6.0 Consensus size: 43
101954885 GAAAAAAAAT
*
101954895 GCCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
* ** *
101954938 GCCGCTAAAGACCATAACCTTTAGCGGCGCAGTTTTCTCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
* ** *
101954981 GCCGCTAAAGACCAGGACCTTTAGCGGCGC--TTTT-AAAAAA
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
* *
101955021 GCCGCTAAAGACCATGACCTTCAGTGGCGCTTTTTTCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
*
101955064 GCCGCTAAAGACCATGACCTTTAGCGGCGCCTTTTTCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
*
101955107 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
101955150 GC
1 GC
101955152 ACACACACAA
Statistics
Matches: 190, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
40 30 0.16
41 4 0.02
42 4 0.02
43 152 0.80
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
Found at i:101955114 original size:126 final size:127
Alignment explanation
Indices: 101954888--101955140 Score: 427
Period size: 126 Copynumber: 2.0 Consensus size: 127
101954878 TTTTTTTGAA
*
101954888 AAAAAATGCCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAT
1 AAAAAATGCCGCTAAAGACCATGACCTTCAACGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAT
*
101954953 AACCTTTAGCGGCGCAGTTTTCTCAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTT
66 AACCTTTAGCGGCGCAGTTTTCGCAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTT
**
101955015 AAAAAA-GCCGCTAAAGACCATGACCTTCAGTGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAT
1 AAAAAATGCCGCTAAAGACCATGACCTTCAACGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAT
* ** *
101955079 GACCTTTAGCGGCGCCTTTTTCGCAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT
66 AACCTTTAGCGGCGCAGTTTTCGCAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTT
101955141 TTCACAAACG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
126 112 0.95
127 6 0.05
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (127 bp):
AAAAAATGCCGCTAAAGACCATGACCTTCAACGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAT
AACCTTTAGCGGCGCAGTTTTCGCAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTT
Found at i:101959241 original size:15 final size:15
Alignment explanation
Indices: 101959223--101959333 Score: 111
Period size: 15 Copynumber: 7.6 Consensus size: 15
101959213 GACTAAAATA
101959223 TTAAATTTTAAATTT
1 TTAAATTTTAAATTT
* **
101959238 TTAAGTTTTTTATTT
1 TTAAATTTTAAATTT
* * **
101959253 TTTATTTTTTTATTT
1 TTAAATTTTAAATTT
* **
101959268 TT-TATTTTTTATTT
1 TTAAATTTTAAATTT
101959282 TTAAATTTTAAA-TT
1 TTAAATTTTAAATTT
101959296 TTAAATTTTAAA-TT
1 TTAAATTTTAAATTT
101959310 TTAAATTTTAAATTT
1 TTAAATTTTAAATTT
101959325 TTAAATTTT
1 TTAAATTTT
101959334 GAGTTTATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
14 40 0.48
15 44 0.52
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:101959252 original size:22 final size:22
Alignment explanation
Indices: 101959218--101959333 Score: 117
Period size: 22 Copynumber: 5.3 Consensus size: 22
101959208 ATATGGACTA
*
101959218 AAATATTAAATTTTAAATTTTT
1 AAATTTTAAATTTTAAATTTTT
* ** **
101959240 AAGTTTTTTATTTTTTATTTTT
1 AAATTTTAAATTTTAAATTTTT
** ** **
101959262 TTATTTTTTATTTTTTATTTTT
1 AAATTTTAAATTTTAAATTTTT
101959284 AAATTTTAAATTTTAAA-TTTT
1 AAATTTTAAATTTTAAATTTTT
101959305 AAATTTTAAATTTTAAATTTTT
1 AAATTTTAAATTTTAAATTTTT
101959327 AAATTTT
1 AAATTTT
101959334 GAGTTTATTT
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
21 21 0.27
22 57 0.73
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (22 bp):
AAATTTTAAATTTTAAATTTTT
Found at i:101959253 original size:7 final size:7
Alignment explanation
Indices: 101959243--101959283 Score: 73
Period size: 7 Copynumber: 5.7 Consensus size: 7
101959233 AATTTTTAAG
101959243 TTTTTTA
1 TTTTTTA
101959250 TTTTTTA
1 TTTTTTA
101959257 TTTTTTTA
1 -TTTTTTA
101959265 TTTTTTA
1 TTTTTTA
101959272 TTTTTTA
1 TTTTTTA
101959279 TTTTT
1 TTTTT
101959284 AAATTTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:101959290 original size:7 final size:7
Alignment explanation
Indices: 101959280--101959333 Score: 99
Period size: 7 Copynumber: 7.6 Consensus size: 7
101959270 TATTTTTTAT
101959280 TTTTAAA
1 TTTTAAA
101959287 TTTTAAA
1 TTTTAAA
101959294 TTTTAAA
1 TTTTAAA
101959301 TTTTAAA
1 TTTTAAA
101959308 TTTTAAA
1 TTTTAAA
101959315 TTTTAAA
1 TTTTAAA
101959322 TTTTTAAA
1 -TTTTAAA
101959330 TTTT
1 TTTT
101959334 GAGTTTATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
7 39 0.85
8 7 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTTAAA
Found at i:101959290 original size:14 final size:14
Alignment explanation
Indices: 101959223--101959333 Score: 96
Period size: 14 Copynumber: 7.6 Consensus size: 14
101959213 GACTAAAATA
101959223 TTAAATTTTAAATTT
1 TTAAATTTT-AATTT
* *
101959238 TTAAGTTTTTTATTTT
1 TTAA--ATTTTAATTT
** *
101959254 TTATTTTTTTATTT
1 TTAAATTTTAATTT
* * *
101959268 TTTATTTTTTATTT
1 TTAAATTTTAATTT
*
101959282 TTAAATTTTAAATT
1 TTAAATTTTAATTT
*
101959296 TTAAATTTTAAATT
1 TTAAATTTTAATTT
101959310 TTAAATTTTAAATTT
1 TTAAATTTT-AATTT
101959325 TTAAATTTT
1 TTAAATTTT
101959334 GAGTTTATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
14 53 0.65
15 17 0.21
16 7 0.09
17 4 0.05
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (14 bp):
TTAAATTTTAATTT
Found at i:101959940 original size:7 final size:7
Alignment explanation
Indices: 101959928--101959991 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
101959918 CCCATGGCCA
101959928 TTAAACC
1 TTAAACC
101959935 TTAAACC
1 TTAAACC
*
101959942 ATAAAACC
1 -TTAAACC
101959950 TTAAACC
1 TTAAACC
* *
101959957 ATAGACC
1 TTAAACC
101959964 TTAAACC
1 TTAAACC
**
101959971 TTAAATA
1 TTAAACC
101959978 TTAAACC
1 TTAAACC
*
101959985 GTAAACC
1 TTAAACC
101959992 AAAAAATAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (7 bp):
TTAAACC
Found at i:101959948 original size:15 final size:15
Alignment explanation
Indices: 101959925--101959975 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
101959915 ATACCCATGG
*
101959925 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
101959940 CCATAAAACCTTAAA
1 CCATAAAACCTTAAA
*
101959955 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
101959969 CCTTAAA
1 CCATAAA
101959976 TATTAAACCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:101960467 original size:43 final size:43
Alignment explanation
Indices: 101960419--101960535 Score: 171
Period size: 43 Copynumber: 2.7 Consensus size: 43
101960409 GCCACAAAAA
** *
101960419 TTAGCGGCGCTTCCACAAAAAACGCCGCTAAAGACTAGGACCT
1 TTAGCGGCGCTTCTTCAAAAAACGCCGCTAAAGACCAGGACCT
*
101960462 TTAGCGGCGCTTCTTCAAAAAACGCCGCTAAAGACCAGGATCT
1 TTAGCGGCGCTTCTTCAAAAAACGCCGCTAAAGACCAGGACCT
* * *
101960505 TTAGCAGCGCTTTTTTAAAAAACGCCGCTAA
1 TTAGCGGCGCTTCTTCAAAAAACGCCGCTAA
101960536 TTTGCCCAGT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (43 bp):
TTAGCGGCGCTTCTTCAAAAAACGCCGCTAAAGACCAGGACCT
Found at i:101966396 original size:9 final size:9
Alignment explanation
Indices: 101966382--101966548 Score: 136
Period size: 9 Copynumber: 17.6 Consensus size: 9
101966372 ATGTATTAGT
101966382 TAAGTTATG
1 TAAGTTATG
101966391 TAAGTTGTTATG
1 TAA---GTTATG
*
101966403 TACGTTATG
1 TAAGTTATG
*
101966412 TGAGTTATG
1 TAAGTTATG
*
101966421 TAAATTATG
1 TAAGTTATG
101966430 TAAGTTATG
1 TAAGTTATG
*
101966439 TGAGTTATG
1 TAAGTTATG
*
101966448 TAAGTTGTTAAG
1 TAA---GTTATG
*
101966460 TAAATTATG
1 TAAGTTATG
101966469 TAAGTTATG
1 TAAGTTATG
*
101966478 TGAGTTATG
1 TAAGTTATG
101966487 TAAGTTGTTATG
1 TAA---GTTATG
*
101966499 TAAATTATG
1 TAAGTTATG
*
101966508 TAAGTTATA
1 TAAGTTATG
* *
101966517 TGAGTTATT
1 TAAGTTATG
101966526 TAAGTTATG
1 TAAGTTATG
* *
101966535 TAATTTATT
1 TAAGTTATG
101966544 TAAGT
1 TAAGT
101966549 AATGATCAAT
Statistics
Matches: 125, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
9 100 0.80
12 25 0.20
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:101966429 original size:39 final size:40
Alignment explanation
Indices: 101966386--101966548 Score: 150
Period size: 39 Copynumber: 4.2 Consensus size: 40
101966376 ATTAGTTAAG
101966386 TTATGTAAGTTGTTATGT-ACGTTATGT-G-AGTTATGTAAA
1 TTATGTAAG-TGTTATGTGA-GTTATGTAGTAGTTATGTAAA
* *
101966425 TTATGTAA--GTTATGTGAGTTATGTAAGTTGTTAAGTAAA
1 TTATGTAAGTGTTATGTGAGTTATGT-AGTAGTTATGTAAA
*
101966464 TTATGTAA--GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTGTTATGTGAGTTATGT-AGTAGTTATGTAAA
* * *
101966503 TTATGTAA--GTTATATGAGTTATTTA--AGTTATGTAAT
1 TTATGTAAGTGTTATGTGAGTTATGTAGTAGTTATGTAAA
*
101966539 TTATTTAAGT
1 TTATGTAAGT
101966549 AATGATCAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
36 30 0.27
37 1 0.01
38 2 0.02
39 77 0.70
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (40 bp):
TTATGTAAGTGTTATGTGAGTTATGTAGTAGTTATGTAAA
Found at i:101966468 original size:48 final size:42
Alignment explanation
Indices: 101966416--101966531 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 42
101966406 GTTATGTGAG
101966416 TTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGTTA
1 TTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGTTA
101966458 --A-GTAAATTATGTAAGTTATGTGAGTTATGTAAGTTG---
1 TTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGTTA
* *
101966494 TTATGTAAATTATGTAAGTTATATGAGTTATTTAAGTT
1 TTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
101966532 ATGTAATTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 9
0.86 0.03 0.11
Matches are distributed among these distances:
38 1 0.01
39 67 0.97
40 1 0.01
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (42 bp):
TTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGTTA
Found at i:101966475 original size:57 final size:57
Alignment explanation
Indices: 101966384--101966492 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
101966374 GTATTAGTTA
* ** *
101966384 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTAAGTAAATTATGTAAGTTATGTAAATTATGTAAGTTATGTG
* *
101966441 AGTTATGTAAGTTGTTAAGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 AGTTATGTAAGTTGTTAAGTAAATTATGTAAGTTATGTAAATTATGTAAGTT
101966493 GTTATGTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.30, C:0.01, G:0.24, T:0.45
Consensus pattern (57 bp):
AGTTATGTAAGTTGTTAAGTAAATTATGTAAGTTATGTAAATTATGTAAGTTATGTG
Found at i:101966532 original size:48 final size:48
Alignment explanation
Indices: 101966382--101966537 Score: 170
Period size: 48 Copynumber: 3.2 Consensus size: 48
101966372 ATGTATTAGT
* * *
101966382 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * * * *
101966430 TAAGTTATGTGAGTTATGTAAGT-TGTTAAGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGT-TATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * * *
101966478 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATT
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
101966526 TAAGTTATGTAA
1 TAAGTTATGTAA
101966538 TTTATTTAAG
Statistics
Matches: 86, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
47 4 0.05
48 78 0.91
49 4 0.05
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.46
Consensus pattern (48 bp):
TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
Found at i:101967169 original size:240 final size:240
Alignment explanation
Indices: 101966736--101967227 Score: 896
Period size: 240 Copynumber: 2.0 Consensus size: 240
101966726 TTAAGGTTAT
101966736 ATAAATATTCAATAGTAAATGAAATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATT-AATAGTAAATGAAATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
101966801 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
65 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
101966866 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
130 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
101966931 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
195 GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
** *
101966977 ATAAATATTAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATT
1 ATAAATATTAATAGTAAATGAAATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGATT
* *
101967042 CATCATATGTGGCGTTGTTACATCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCAA
66 CATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCAA
*
101967107 CCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAT
131 CCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAG
* *
101967172 GTCAGTTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
101967217 ATAAA-ATTAAT
1 ATAAATATTAAT
101967228 TCATACTTAT
Statistics
Matches: 243, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
239 6 0.02
240 228 0.94
241 9 0.04
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (240 bp):
ATAAATATTAATAGTAAATGAAATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGATT
CATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCAA
CCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAG
GTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
Found at i:101967943 original size:63 final size:63
Alignment explanation
Indices: 101967876--101968130 Score: 501
Period size: 63 Copynumber: 4.0 Consensus size: 63
101967866 AGAAATATTG
101967876 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
1 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
101967939 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
1 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
101968002 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
1 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
*
101968065 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAATATAAAATAATTTAAA
1 CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
101968128 CAT
1 CAT
101968131 GACCGCATCA
Statistics
Matches: 191, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 191 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (63 bp):
CATATTGTATATAATACAAATTATTTATGTATCAAATTTTATAAGAAAATAAAATAATTTAAA
Found at i:101972811 original size:12 final size:12
Alignment explanation
Indices: 101972796--101972821 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
101972786 GTTTTTTGGT
101972796 AAAACGCCGCTA
1 AAAACGCCGCTA
101972808 AAAACGCCGCTA
1 AAAACGCCGCTA
101972820 AA
1 AA
101972822 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:101972952 original size:125 final size:125
Alignment explanation
Indices: 101972727--101972970 Score: 375
Period size: 125 Copynumber: 2.0 Consensus size: 125
101972717 TGCTCGGGTC
* *
101972727 TTTAGCGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGTGTTTGACAATTTTTGCGGCGTTTTT
1 TTTAGCGGCGTTTTTAACAAAAACGCCGCTATTGCTCTGTGTTTGACAATTTTTGCGGCGTTTTT
* *
101972792 TGGTAAAACGCCGCTAAAAACGCCGCTAAAGCCCTATTTTCATGTAGTGTATTGCTCTGTT
66 TGATAAAACGCCGCTAAAAACGCCGCTAAAACCCTATTTTCATGTAGTGT-TTGCTCTGTT
* *
101972853 TTTAGCGGCG-TTTTAACAAAAAACG-CGCTATTGCTCTGTGTTTTACAATTTTTGTGGCGTTTT
1 TTTAGCGGCGTTTTTAAC-AAAAACGCCGCTATTGCTCTGTGTTTGACAATTTTTGCGGCGTTTT
* * *
101972916 TTGATAAAATGCCGCTAAAAACGCCGTTAAAACCCTATTTTCCTGTAGTGTTTGC
65 TTGATAAAACGCCGCTAAAAACGCCGCTAAAACCCTATTTTCATGTAGTGTTTGC
101972971 ATCTTCATCA
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
124 4 0.04
125 88 0.81
126 16 0.15
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (125 bp):
TTTAGCGGCGTTTTTAACAAAAACGCCGCTATTGCTCTGTGTTTGACAATTTTTGCGGCGTTTTT
TGATAAAACGCCGCTAAAAACGCCGCTAAAACCCTATTTTCATGTAGTGTTTGCTCTGTT
Found at i:101977694 original size:26 final size:25
Alignment explanation
Indices: 101977635--101977694 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
101977625 TATTTTTATA
* *
101977635 ATTTTTAAATAATTAAAATAATTTT
1 ATTTTTAAAAAATAAAAATAATTTT
*
101977660 TTTAATTTAAAAAATAAAATATAATTTT
1 ATT--TTTAAAAAATAAAA-ATAATTTT
101977688 ATTTTTA
1 ATTTTTA
101977695 TTAATTTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
25 2 0.07
26 4 0.14
27 12 0.43
28 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTTTAAAAAATAAAAATAATTTT
Found at i:101979383 original size:49 final size:48
Alignment explanation
Indices: 101979283--101979384 Score: 125
Period size: 48 Copynumber: 2.1 Consensus size: 48
101979273 CGTGTAGTTG
* * *
101979283 ACACGCCCGTGTCTATTTAACAGATTGTAACATGGCCTAAGCCACACC
1 ACACGCCCGTGTCTATTTAACAGACTCTAACACGGCCTAAGCCACACC
* * *
101979331 ACACGGCCGTGTCTATTTAGCAGACTCTAAACACGGCTTAAGCCAC-CTC
1 ACACGCCCGTGTCTATTTAACAGACTCT-AACACGGCCTAAGCCACAC-C
101979380 ACACG
1 ACACG
101979385 AACGTGTCCC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
48 25 0.54
49 21 0.46
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (48 bp):
ACACGCCCGTGTCTATTTAACAGACTCTAACACGGCCTAAGCCACACC
Found at i:101979391 original size:49 final size:48
Alignment explanation
Indices: 101979290--101979392 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 48
101979280 TTGACACGCC
* * * **
101979290 CGTGTCTATTTAACAGATTGTAACATGGCCTAAGCCACACCACACGGC
1 CGTGTCTATTTAACAGACTCTAACACGGCCTAAGCCACACCACACGAA
* *
101979338 CGTGTCTATTTAGCAGACTCTAAACACGGCTTAAGCCAC-CTCACACGAA
1 CGTGTCTATTTAACAGACTCT-AACACGGCCTAAGCCACAC-CACACGAA
101979387 CGTGTC
1 CGTGTC
101979393 CCTGTCGAGC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
48 19 0.41
49 27 0.59
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (48 bp):
CGTGTCTATTTAACAGACTCTAACACGGCCTAAGCCACACCACACGAA
Found at i:101985358 original size:161 final size:161
Alignment explanation
Indices: 101985092--101985697 Score: 1043
Period size: 161 Copynumber: 3.8 Consensus size: 161
101985082 CCACCGTCAT
* ** *
101985092 AATAGGGTTACAAGGCATTACCGGACAATATAACATTTATCAAACATTCAATATCACATCTCATT
1 AATAGGGTTACGAGGCATTACCAAACAATATAACAATTATCAAACATTCAATATCACATCTCATT
* * *
101985157 CATTCACATGCACAAAGTCCCTTAAATAGGTTTGTGAGACCTTAAAACATGCTTAAACTAATAAA
66 CATTCACATGCACAAAGTCCCTTAAATAGGTTTATGAGACCTTAAAACATGCTTAAACCAAAAAA
* *
101985222 TGTAATACCCCTAACCCGTATTCATCG-TCGG
131 TGTAATACCCCTAACCCGTATCCATCGCT-AG
* * * *
101985253 AATAGGGTTATGAGGCATTACCAGACAATATAACATTTATCAAACTTTCAATATCACATCTCATT
1 AATAGGGTTACGAGGCATTACCAAACAATATAACAATTATCAAACATTCAATATCACATCTCATT
* *
101985318 CATTCACATGCACAAAGTCCGTTAAATAGGTCTATGAGACCTTAAAACATGCTTAAACCAAAAAA
66 CATTCACATGCACAAAGTCCCTTAAATAGGTTTATGAGACCTTAAAACATGCTTAAACCAAAAAA
101985383 TGTAATACCCCTAACCCGTATCCATCGCTAG
131 TGTAATACCCCTAACCCGTATCCATCGCTAG
101985414 AATAGGGTTACGAGGCATTACCAAACAATATAACAATTATCAAACATTCAATATCACATCTCATT
1 AATAGGGTTACGAGGCATTACCAAACAATATAACAATTATCAAACATTCAATATCACATCTCATT
101985479 CATTCACATGCACAAAGTCCCTTAAATAGGTTTATGAGACCTTAAAACATGCTTAAACCAAAAAA
66 CATTCACATGCACAAAGTCCCTTAAATAGGTTTATGAGACCTTAAAACATGCTTAAACCAAAAAA
101985544 TGTAATACCCCTAACCCGTATCCATCGCTAG
131 TGTAATACCCCTAACCCGTATCCATCGCTAG
101985575 AATAGGGTTACGAGGCATTACCAAACAATATAACAATTATCAAACATTCAATATCACATCTCATT
1 AATAGGGTTACGAGGCATTACCAAACAATATAACAATTATCAAACATTCAATATCACATCTCATT
* *
101985640 CATTCACATGCACAAAGTCCCTTAAATAGGTTTACGAGACCTTAAAACTTGCTTAAAC
66 CATTCACATGCACAAAGTCCCTTAAATAGGTTTATGAGACCTTAAAACATGCTTAAAC
101985698 GAGGTTCGAG
Statistics
Matches: 425, Mismatches: 19, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
161 424 1.00
162 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.27
Consensus pattern (161 bp):
AATAGGGTTACGAGGCATTACCAAACAATATAACAATTATCAAACATTCAATATCACATCTCATT
CATTCACATGCACAAAGTCCCTTAAATAGGTTTATGAGACCTTAAAACATGCTTAAACCAAAAAA
TGTAATACCCCTAACCCGTATCCATCGCTAG
Found at i:101986664 original size:136 final size:136
Alignment explanation
Indices: 101986520--101986785 Score: 469
Period size: 136 Copynumber: 2.0 Consensus size: 136
101986510 ATAAGGCATT
101986520 ATATGCATCATATATATCACTTATCAATCACATAACTTAAGCCAACATAAATGGCTAAAAACATA
1 ATATGCATCATATATATCACTTATCAATCACATAACTTAAGCCAACATAAATGGCTAAAAACATA
* * * *
101986585 CCAACATTTACATCATTAACAAGCTAAATCACATGGCTAACAATCATAGCTCAAAACATATCAAA
66 CCAACATTTACATCATTAACAAGCCAAATCACATGACTAACAATCACAGCTCAAAAAATATCAAA
101986650 TGCCTC
131 TGCCTC
* * *
101986656 ATATGCATCATATATATCACTTATCAATCACATAACTTAAGCTAACTTAAATGGCTAAGAACATA
1 ATATGCATCATATATATCACTTATCAATCACATAACTTAAGCCAACATAAATGGCTAAAAACATA
101986721 CCAACATTTACATCATTAACAAGCCAAATCACATGACTAACAATCACAGCTCAAAAAATATCAAA
66 CCAACATTTACATCATTAACAAGCCAAATCACATGACTAACAATCACAGCTCAAAAAATATCAAA
101986786 ATGACTCTAA
Statistics
Matches: 123, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
136 123 1.00
ACGTcount: A:0.45, C:0.23, G:0.06, T:0.26
Consensus pattern (136 bp):
ATATGCATCATATATATCACTTATCAATCACATAACTTAAGCCAACATAAATGGCTAAAAACATA
CCAACATTTACATCATTAACAAGCCAAATCACATGACTAACAATCACAGCTCAAAAAATATCAAA
TGCCTC
Found at i:101987333 original size:47 final size:46
Alignment explanation
Indices: 101987217--101987348 Score: 140
Period size: 47 Copynumber: 2.8 Consensus size: 46
101987207 AATCGGTAAG
* * * *
101987217 TACCTATGCCATGGCCCGTAGCCAAATCAAGGTAACTTATCACAGAG
1 TACCTATACCATGACCCGTAGCCAAATCAAGGT-ACTTATCACAAAA
* * * * *
101987264 TACTTATACCATGACCCATAGCCAAATCAAGGTAGTTCCTCTCAAAA
1 TACCTATACCATGACCCGTAGCCAAATCAAGGTACTT-ATCACAAAA
* *
101987311 TACCTATATCATGCCCCGTAGCCAAATCAAGGTA-TTAT
1 TACCTATACCATGACCCGTAGCCAAATCAAGGTACTTAT
101987349 TCGCACCCGA
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
45 1 0.01
46 5 0.07
47 64 0.91
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (46 bp):
TACCTATACCATGACCCGTAGCCAAATCAAGGTACTTATCACAAAA
Found at i:101998521 original size:23 final size:22
Alignment explanation
Indices: 101998478--101998525 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
101998468 GATGGTGGTC
101998478 GAATGCAAATCTAGGAGAAAACA
1 GAATGCAAATCTAGGAGAAAA-A
* *
101998501 GAATGCAATTC-AGGGGCAAAAA
1 GAATGCAAATCTAGGAG-AAAAA
101998523 GAA
1 GAA
101998526 AAAAATTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.50, C:0.12, G:0.25, T:0.12
Consensus pattern (22 bp):
GAATGCAAATCTAGGAGAAAAA
Found at i:102005225 original size:37 final size:37
Alignment explanation
Indices: 102005175--102005253 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
102005165 TTATTACGAA
* * *
102005175 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
102005212 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
102005249 GTCTT
1 GTCTT
102005254 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:102005450 original size:47 final size:47
Alignment explanation
Indices: 102005372--102006328 Score: 1815
Period size: 47 Copynumber: 20.3 Consensus size: 47
102005362 CCCTTCGGGA
* * * * * *
102005372 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102005419 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005513 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005607 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005701 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005748 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005795 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005842 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005889 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005936 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102005983 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102006030 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102006077 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102006124 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102006171 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102006218 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102006265 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102006314 CTTATCACATATATA
1 CTTATCACATATATA
102006329 TACACTACGA
Statistics
Matches: 896, Mismatches: 12, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
47 850 0.95
49 46 0.05
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102007522 original size:16 final size:16
Alignment explanation
Indices: 102007501--102007532 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
102007491 AAGGAAAGCT
102007501 CATTAAGGTTCCCAAC
1 CATTAAGGTTCCCAAC
102007517 CATTAAGGTTCCCAAC
1 CATTAAGGTTCCCAAC
102007533 TCCGATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (16 bp):
CATTAAGGTTCCCAAC
Found at i:102013725 original size:65 final size:65
Alignment explanation
Indices: 102013644--102013773 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
102013634 CTAATTTGTT
102013644 ATTGGTTTATAAGTGAAGGCTTTTAAATGGTAAATAACCCCTTTGTTTTAATATGGACGGCATAA
1 ATTGGTTTATAAGTGAAGGCTTTTAAATGGTAAATAACCCCTTTGTTTTAATATGGACGGCATAA
102013709 ATTGGTTTATAAGTGAAGGCTTTTAAATGGTAAATAACCCCTTTGTTTTAATATGGACGGCATAA
1 ATTGGTTTATAAGTGAAGGCTTTTAAATGGTAAATAACCCCTTTGTTTTAATATGGACGGCATAA
102013774 GGCTTACAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (65 bp):
ATTGGTTTATAAGTGAAGGCTTTTAAATGGTAAATAACCCCTTTGTTTTAATATGGACGGCATAA
Found at i:102017558 original size:79 final size:82
Alignment explanation
Indices: 102017414--102017598 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
102017404 GCTCCTCGTT
* * *
102017414 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCG
* *
102017478 GATTTAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* * * **
102017494 CAAATGCTTTCGGG-CTTAGCCCGGAAT-TAGTATCTCTCACAAATGCC-TTCGGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGA-CTTAACCC
* *
102017556 GGATATGGTCACTTAGCA
65 GGATATAGTAACTTAGCA
102017574 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
102017599 CATCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 5 0.06
79 50 0.57
80 33 0.38
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCG
GATATAGTAACTTAGCA
Done.