Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 47 of 310
Found at i:14007948 original size:22 final size:22
Alignment explanation
Indices: 14007891--14007948 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
14007881 TACGAGGACT
* *
14007891 GTGGAGGTATGGGACTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
14007913 GTGGGGGTATGGGGCTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
14007935 GTGGGGGTATGGGG
1 GTGGGGGTATGGGG
14007949 TTGCTTCATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.12, C:0.03, G:0.55, T:0.29
Consensus pattern (22 bp):
GTGGGGGTATGGGGCTGTTGTA
Found at i:14008780 original size:88 final size:88
Alignment explanation
Indices: 14008640--14008842 Score: 239
Period size: 88 Copynumber: 2.3 Consensus size: 88
14008630 ATCTTGAGCC
* *
14008640 CAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAATAGACATTAAAAACAAAAACTGAAAAT
1 CAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAATAGACATTAAAAACAAAAACTGAAAAT
*
14008705 ATCTCAGCATGTGAACAAAGGCT
66 ACCTCAGCATGTGAACAAAGGCT
* * ** * ***
14008728 CAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAATAGA-ATTTGCCAAACAGATTTTGAAA
1 CAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAATAGACA-TT-AAAAACAAAAACTGAAA
* * *
14008791 ATACCTCGGCATGTGACCCAAGGCT
64 ATACCTCAGCATGTGAACAAAGGCT
*
14008816 CAACTCACCTCTCGCAATATGAGTTGA
1 CAACTCACTTCTCGCAATATGAGTTGA
14008843 AATTAAAACA
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
86 1 0.01
87 14 0.14
88 83 0.85
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (88 bp):
CAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAATAGACATTAAAAACAAAAACTGAAAAT
ACCTCAGCATGTGAACAAAGGCT
Found at i:14009028 original size:120 final size:123
Alignment explanation
Indices: 14008810--14009038 Score: 347
Period size: 120 Copynumber: 1.9 Consensus size: 123
14008800 CATGTGACCC
*
14008810 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTG-AATT-AAACACAAAAATCGAAAATACCTCAGC
* *
14008875 GTGCCCCGAGGCTCAACTCACCTCTAGCGATATGAGTTGATTTTGAAAAACCAAAATTAA
64 GTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTGAAAAACCAAAATTAA
* * *
14008935 AAGGCTTAACTCACCTCTCGCGATATGAGTTG-A-T-AACACAAAAGTCGAAAATACCTCAGCGT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAACACAAAAATCGAAAATACCTCAGCGT
* *
14008997 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAATTGATTTT
66 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTT
14009039 TTTGAAAAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
120 64 0.67
122 1 0.01
123 1 0.01
125 30 0.31
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (123 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAACACAAAAATCGAAAATACCTCAGCGT
GCCCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTGAAAAACCAAAATTAA
Found at i:14010108 original size:13 final size:13
Alignment explanation
Indices: 14010090--14010117 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14010080 AGTCTCACTA
14010090 TTTGTCGTACAGT
1 TTTGTCGTACAGT
14010103 TTTGTCGTACAGT
1 TTTGTCGTACAGT
14010116 TT
1 TT
14010118 AAACGCCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (13 bp):
TTTGTCGTACAGT
Found at i:14021629 original size:16 final size:16
Alignment explanation
Indices: 14021608--14021638 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14021598 ACAACTGATA
14021608 ATACTAATATATATAT
1 ATACTAATATATATAT
14021624 ATACTAATATATATA
1 ATACTAATATATATA
14021639 ACACATAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
ATACTAATATATATAT
Found at i:14021981 original size:20 final size:19
Alignment explanation
Indices: 14021958--14022003 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
14021948 AAGAAGAGGA
*
14021958 GGGAGAGAAAAGAGGGAGCG
1 GGGAGAGAAAAGAGGG-GAG
* *
14021978 GGGAAAGAAGAGAGGGGAG
1 GGGAGAGAAAAGAGGGGAG
14021997 GGGAGAG
1 GGGAGAG
14022004 CTAAAAATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.39, C:0.02, G:0.59, T:0.00
Consensus pattern (19 bp):
GGGAGAGAAAAGAGGGGAG
Found at i:14022514 original size:22 final size:22
Alignment explanation
Indices: 14022457--14022514 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
14022447 TACGAGGACT
* **
14022457 GTGGAGGTATGGTACTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
14022479 GTGGGGGTATGGGGCTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
14022501 GTGGGGGTATGGGG
1 GTGGGGGTATGGGG
14022515 TTGCTTCATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.12, C:0.03, G:0.53, T:0.31
Consensus pattern (22 bp):
GTGGGGGTATGGGGCTGTTGTA
Found at i:14034895 original size:20 final size:20
Alignment explanation
Indices: 14034855--14034895 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14034845 TTTTGAGATC
*
14034855 ATTGTAGCTTAATCTAACTA
1 ATTGTAGCTTAATATAACTA
*
14034875 ATTGTAGCTTAATATAGCTA
1 ATTGTAGCTTAATATAACTA
14034895 A
1 A
14034896 CCCGAGGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (20 bp):
ATTGTAGCTTAATATAACTA
Found at i:14037949 original size:34 final size:32
Alignment explanation
Indices: 14037906--14037988 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 32
14037896 ATCTCAAAAA
*
14037906 CATAATAAACTTGATGCGAAAGATAAAAATTAAT
1 CATAATAAACTTGATGC-AAAGA-AAAAACTAAT
* *
14037940 CATAATAAACTTGAT---ATGAAAACACTAAT
1 CATAATAAACTTGATGCAAAGAAAAAACTAAT
14037969 CATAATAAACTTGATGCAAA
1 CATAATAAACTTGATGCAAA
14037989 AGACAAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
29 23 0.55
30 3 0.07
32 1 0.02
34 15 0.36
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.27
Consensus pattern (32 bp):
CATAATAAACTTGATGCAAAGAAAAAACTAAT
Found at i:14048389 original size:46 final size:46
Alignment explanation
Indices: 14048326--14048462 Score: 238
Period size: 46 Copynumber: 3.0 Consensus size: 46
14048316 TTTCTGCCAT
* *
14048326 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
14048372 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
**
14048418 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
14048463 GAGAGCACAC
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:14048563 original size:54 final size:54
Alignment explanation
Indices: 14048498--14049281 Score: 1550
Period size: 54 Copynumber: 14.5 Consensus size: 54
14048488 CCTTACAGTG
14048498 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048552 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048606 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048660 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048714 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048768 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048822 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048876 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048930 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14048984 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14049038 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14049092 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
**
14049146 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTTG
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14049200 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
14049254 GGATTACCAGTCCAGGCTAAATCCCCTG
1 GGATTACCAGTCCAGGCTAAATCCCCTG
14049282 CAATGACAAT
Statistics
Matches: 726, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 726 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (54 bp):
GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA
Found at i:14051261 original size:16 final size:16
Alignment explanation
Indices: 14051240--14051278 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14051230 AATTTTTCCC
*
14051240 TTTTTCCTTTCTTCTT
1 TTTTTCCTTCCTTCTT
14051256 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
14051272 TCTTTCC
1 TTTTTCC
14051279 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:14054540 original size:60 final size:60
Alignment explanation
Indices: 14054460--14054578 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
14054450 TTGTTTTTTA
* * * * *
14054460 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATCAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTG
14054520 TAATTATTTTAAAATCAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTT
1 TAATTATTTTAAAATCAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTT
14054579 AGTTTAGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.52
Consensus pattern (60 bp):
TAATTATTTTAAAATCAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTG
Found at i:14059343 original size:46 final size:46
Alignment explanation
Indices: 14059281--14059546 Score: 334
Period size: 46 Copynumber: 6.0 Consensus size: 46
14059271 TTTGACGTGA
* * * ** *
14059281 TGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
14059327 TTCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
14059373 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
14059419 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATACCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
14059465 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
14059503 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
14059547 AGAGCACACT
Statistics
Matches: 193, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 146 0.76
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:14059511 original size:38 final size:38
Alignment explanation
Indices: 14059460--14059535 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
14059450 CATTTCATAC
14059460 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
14059498 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
14059536 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:14059646 original size:54 final size:54
Alignment explanation
Indices: 14059580--14059716 Score: 274
Period size: 54 Copynumber: 2.5 Consensus size: 54
14059570 TCCTTACAGT
14059580 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
14059634 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
14059688 GGGATTACCAGTCCAGGCTAAATCCCCTG
1 GGGATTACCAGTCCAGGCTAAATCCCCTG
14059717 CAACGACAAT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (54 bp):
GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
Found at i:14061697 original size:11 final size:11
Alignment explanation
Indices: 14061681--14061728 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
14061671 CTTTATATAC
14061681 TAATAAAATAA
1 TAATAAAATAA
*
14061692 TAATAAAATATCT
1 TAATAAAATA--A
* *
14061705 TATTAAAATAT
1 TAATAAAATAA
14061716 TAATAAAATAA
1 TAATAAAATAA
14061727 TA
1 TA
14061729 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:14063568 original size:17 final size:17
Alignment explanation
Indices: 14063543--14063585 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
14063533 TAAAGAGCTA
* *
14063543 TCATTGTCTCTACGTCT
1 TCATCGTCTCCACGTCT
*
14063560 TCATCGTCTCCATGTCT
1 TCATCGTCTCCACGTCT
14063577 TCATCGTCT
1 TCATCGTCT
14063586 ACAAGTTCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.12, C:0.33, G:0.12, T:0.44
Consensus pattern (17 bp):
TCATCGTCTCCACGTCT
Found at i:14064303 original size:21 final size:21
Alignment explanation
Indices: 14064279--14064322 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
14064269 AAAAATTAAT
14064279 AATATTTTATTAA-ATGAAAAA
1 AATATTTT-TTAATATGAAAAA
*
14064300 AATATTTTTTAATATTAAAAA
1 AATATTTTTTAATATGAAAAA
14064321 AA
1 AA
14064323 AAGAGTTGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AATATTTTTTAATATGAAAAA
Found at i:14066174 original size:13 final size:12
Alignment explanation
Indices: 14066147--14066173 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14066137 AGTAACTGAA
14066147 CCCAACCCCCCC
1 CCCAACCCCCCC
14066159 CCCAACCCCCCC
1 CCCAACCCCCCC
14066171 CCC
1 CCC
14066174 CCAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.85, G:0.00, T:0.00
Consensus pattern (12 bp):
CCCAACCCCCCC
Found at i:14071919 original size:510 final size:504
Alignment explanation
Indices: 14070820--14071937 Score: 2146
Period size: 510 Copynumber: 2.2 Consensus size: 504
14070810 CCCGGAGTTA
14070820 TTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTCATGAAAACAGCAAGCA
1 TTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTCATGAAAACAGCAAGCA
14070885 AAAATTGATAGGCTAAAAAATAGCCGAATGAGAAAGTCCACACTTTCATTTCCATTACAAAATAT
66 AAAATTGATAGGCTAAAAAATAGCCGAATGAGAAAGTCCACACTTTCATTTCCATTACAAAATAT
14070950 ATAAGAATTACATGGTGAGTCACACGCCATGATGCGAGTAAAAATTACATCAGACACTCCATTCT
131 ATAAGAATTACATGGTGAGTCACACGCCATGATGCGAGTAAAAATTACATCAGACACTCCATTCT
14071015 GTAGGCAGGCCATGGCTTTATGCTTCTTGGCTCGCTCCTCACCATGTTGCTTGATCTGAGCAATG
196 GTAGGCAGGCCATGGCTTTATGCTTCTTGGCTCGCTCCTCACCATGTTGCTTGATCTGAGCAATG
* *
14071080 GTTGGATTTGCTCTCAATGGTAGTTGCTCGACATCAACTGCACTCCACAGATCAAGTGCTTGGAG
261 GTTGGATTTGCTCTCAATGGTAGTGGCTCGACATCAACTGCACTCCACAAATCAAGTGCTTGGAG
14071145 GTAAGTTTTCATTTTAACTATCCAAATGTGGTAGTTTTCTCCAGCAAAAATTGGTGGTGGAGGAG
326 GTAAGTTTTCATTTTAACTATCCAAATGTGGTAGTTTTCTCCAGCAAAAATTGGTGGTGGAGGAG
14071210 GTGCAAAGCTCATGTTGCTGAAACTAGTTTGACAAACACAATTTTTGAGTTTATTTTGAAACAAA
391 GTGCAAAGCTCATGTTGCTGAAACTAGTTTGACAAACACAATTTTTGAGTTTATTTTGAAACAAA
14071275 AAAAAACTTAAACAACAGAGGTCCTCAAAGACAAGAGCTCTGACACCAT
456 AAAAAACTTAAACAACAGAGGTCCTCAAAGACAAGAGCTCTGACACCAT
14071324 TTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTCATGAAAACAGCAAGCA
1 TTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTCATGAAAACAGCAAGCA
14071389 AAAATTGATAGGCTAAAAAATAGCCGAATGAGAAAGTCCACACTTTCATTTCCATTACAAAATAT
66 AAAATTGATAGGCTAAAAAATAGCCGAATGAGAAAGTCCACACTTTCATTTCCATTACAAAATAT
14071454 ATAAGAATTACATGGTGAGTCACACGCCATGATGCGAGTAAAAATTACATCAGACACTCCATTCT
131 ATAAGAATTACATGGTGAGTCACACGCCATGATGCGAGTAAAAATTACATCAGACACTCCATTCT
14071519 GTAGGCAGGCCATGGCTTTATGCTTCTTGGCTCGCTCCTCACCATGTTGCTTGATCTGAGCAATG
196 GTAGGCAGGCCATGGCTTTATGCTTCTTGGCTCGCTCCTCACCATGTTGCTTGATCTGAGCAATG
14071584 GTTGGATTTGCTCTCAATGGTAGTGGCTCGACATCATTTTCAACTGCACTCCACAAATCAAGTGC
261 GTTGGATTTGCTCTCAATGGTAGTGGCTCG--A-CA---TCAACTGCACTCCACAAATCAAGTGC
14071649 TTGGAGGTAAGTTTTCATTTTAACTATCCAAATGTGGTAGTTTTCTCCAGCAAAAATTGGTGGTG
320 TTGGAGGTAAGTTTTCATTTTAACTATCCAAATGTGGTAGTTTTCTCCAGCAAAAATTGGTGGTG
14071714 GAGGAGGTGCAAAGCTCATGTTGCTGAAACTAGTTTGACAAACACAATTTTTGAGTTTATTTTGA
385 GAGGAGGTGCAAAGCTCATGTTGCTGAAACTAGTTTGACAAACACAATTTTTGAGTTTATTTTGA
14071779 AACAAAAAAAAACTTAAACAACAGAGGTCCTCAAAGACAAGAGCTCTGACACCAT
450 AACAAAAAAAAACTTAAACAACAGAGGTCCTCAAAGACAAGAGCTCTGACACCAT
*
14071834 TTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTCATGAAAACAACAAGCA
1 TTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTCATGAAAACAGCAAGCA
*
14071899 AAAATTGATAGGCTAAAAAATAGCCGAACGAGAAAGTCC
66 AAAATTGATAGGCTAAAAAATAGCCGAATGAGAAAGTCC
14071938 GTTTTCTCCA
Statistics
Matches: 604, Mismatches: 4, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
504 289 0.48
506 1 0.00
507 2 0.00
510 312 0.52
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (504 bp):
TTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTCATGAAAACAGCAAGCA
AAAATTGATAGGCTAAAAAATAGCCGAATGAGAAAGTCCACACTTTCATTTCCATTACAAAATAT
ATAAGAATTACATGGTGAGTCACACGCCATGATGCGAGTAAAAATTACATCAGACACTCCATTCT
GTAGGCAGGCCATGGCTTTATGCTTCTTGGCTCGCTCCTCACCATGTTGCTTGATCTGAGCAATG
GTTGGATTTGCTCTCAATGGTAGTGGCTCGACATCAACTGCACTCCACAAATCAAGTGCTTGGAG
GTAAGTTTTCATTTTAACTATCCAAATGTGGTAGTTTTCTCCAGCAAAAATTGGTGGTGGAGGAG
GTGCAAAGCTCATGTTGCTGAAACTAGTTTGACAAACACAATTTTTGAGTTTATTTTGAAACAAA
AAAAAACTTAAACAACAGAGGTCCTCAAAGACAAGAGCTCTGACACCAT
Found at i:14072129 original size:250 final size:250
Alignment explanation
Indices: 14071688--14072186 Score: 971
Period size: 250 Copynumber: 2.0 Consensus size: 250
14071678 AAATGTGGTA
14071688 GTTTTCTCCAGCAAAAATTGGTGGTGGAGGAGGTGCAAAGCTCATGTTGCTGAAACTAGTTTGAC
1 GTTTTCTCCAGCAAAAATTGGTGGTGGAGGAGGTGCAAAGCTCATGTTGCTGAAACTAGTTTGAC
14071753 AAACACAATTTTTGAGTTTATTTTGAAACAAAAAAAAACTTAAACAACAGAGGTCCTCAAAGACA
66 AAACACAATTTTTGAGTTTATTTTGAAACAAAAAAAAACTTAAACAACAGAGGTCCTCAAAGACA
*
14071818 AGAGCTCTGACACCATTTGTTAGAAAAAAACAGCAGCAACAATGAACAACAAAGAGCATAAGCTC
131 AGAGCTCTGACACCATTTGTTAGAAAAAAACAACAGCAACAATGAACAACAAAGAGCATAAGCTC
14071883 ATGAAAACAACAAGCAAAAATTGATAGGCTAAAAAATAGCCGAACGAGAAAGTCC
196 ATGAAAACAACAAGCAAAAATTGATAGGCTAAAAAATAGCCGAACGAGAAAGTCC
14071938 GTTTTCTCCAGCAAAAATTGGTGGTGGAGGAGGTGCAAAGCTCATGTTGCTGAAACTAGTTTGAC
1 GTTTTCTCCAGCAAAAATTGGTGGTGGAGGAGGTGCAAAGCTCATGTTGCTGAAACTAGTTTGAC
14072003 AAACACAATTTTTGAGTTTATTTTGAAACAAAAAAAAACTTAAACAACAGAGGTCCTCAAAGACA
66 AAACACAATTTTTGAGTTTATTTTGAAACAAAAAAAAACTTAAACAACAGAGGTCCTCAAAGACA
14072068 AGAGCTCTGACACCATTTGTTAGAAAAAAACAACAGCAACAATGAACAACAAAGAGCATAAGCTC
131 AGAGCTCTGACACCATTTGTTAGAAAAAAACAACAGCAACAATGAACAACAAAGAGCATAAGCTC
* *
14072133 ATGAAAACAGCAAGCAAAAATTGATAGGCTAAAAAATAGCCGAATGAGAAAGTC
196 ATGAAAACAACAAGCAAAAATTGATAGGCTAAAAAATAGCCGAACGAGAAAGTC
14072187 TACACTTTCA
Statistics
Matches: 246, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
250 246 1.00
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (250 bp):
GTTTTCTCCAGCAAAAATTGGTGGTGGAGGAGGTGCAAAGCTCATGTTGCTGAAACTAGTTTGAC
AAACACAATTTTTGAGTTTATTTTGAAACAAAAAAAAACTTAAACAACAGAGGTCCTCAAAGACA
AGAGCTCTGACACCATTTGTTAGAAAAAAACAACAGCAACAATGAACAACAAAGAGCATAAGCTC
ATGAAAACAACAAGCAAAAATTGATAGGCTAAAAAATAGCCGAACGAGAAAGTCC
Found at i:14072317 original size:23 final size:23
Alignment explanation
Indices: 14072291--14072345 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
14072281 AATTAAAAAG
14072291 ATGAAAGCAT-TATAACTATCATT
1 ATGAAAGCATAT-TAACTATCATT
**
14072314 ATGAAAGCATATTAGTTATCATT
1 ATGAAAGCATATTAACTATCATT
14072337 ATGAAAGCA
1 ATGAAAGCA
14072346 AAAGATGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 28 0.97
24 1 0.03
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.33
Consensus pattern (23 bp):
ATGAAAGCATATTAACTATCATT
Found at i:14072378 original size:23 final size:23
Alignment explanation
Indices: 14072350--14072401 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
14072340 AAAGCAAAAG
14072350 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
14072373 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
14072396 ATGAAA
1 ATGAAA
14072402 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:14072378 original size:59 final size:59
Alignment explanation
Indices: 14072286--14072401 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 59
14072276 TTAATAATTA
*
14072286 AAAAGATGAAAGCATTATAACTATCATTATGAAAGCATATTAGTTATCATTATGAAAGC
1 AAAAGATGAAAGCATTATAACTATCATTATGAAAGCATATTAGCTATCATTATGAAAGC
* *
14072345 AAAAGATGAAAGCATTATAGCTATCATTATGAAAGCATATTAGCTATTATTATGAAA
1 AAAAGATGAAAGCATTATAACTATCATTATGAAAGCATATTAGCTATCATTATGAAA
14072402 CCAAGTTGCA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.31
Consensus pattern (59 bp):
AAAAGATGAAAGCATTATAACTATCATTATGAAAGCATATTAGCTATCATTATGAAAGC
Found at i:14072464 original size:9 final size:9
Alignment explanation
Indices: 14072452--14072483 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
14072442 ACAAATATTA
14072452 AAAATAAAC
1 AAAATAAAC
14072461 AAAATAAAC
1 AAAATAAAC
14072470 AAAATAAAC
1 AAAATAAAC
14072479 AAAAT
1 AAAAT
14072484 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:14074594 original size:53 final size:54
Alignment explanation
Indices: 14074536--14074692 Score: 156
Period size: 54 Copynumber: 2.9 Consensus size: 54
14074526 GTACGAGAAA
* * ** * **
14074536 GTTGTGATCTTAAATCGGC-AACTACAAAATTCTGAAAATCTTTTAAGTGATTG
1 GTTGTGATCTTAAATCGGCAAACCACAAAATTCTAAAAATCTCATAAGTAAAAG
* * *
14074589 GTTGTGAT-TGTAAACCGGCAAACCATAAAATTTTAAAAATCTCATAAGTAAAAG
1 GTTGTGATCT-TAAATCGGCAAACCACAAAATTCTAAAAATCTCATAAGTAAAAG
* * ** *
14074643 GTTGTGATCATAAATCGGTAAACCGTAAGATTCTAAAAATCTCATAAGTA
1 GTTGTGATCTTAAATCGGCAAACCACAAAATTCTAAAAATCTCATAAGTA
14074693 GGAGGTTGCG
Statistics
Matches: 85, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 16 0.19
54 68 0.80
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.31
Consensus pattern (54 bp):
GTTGTGATCTTAAATCGGCAAACCACAAAATTCTAAAAATCTCATAAGTAAAAG
Found at i:14074720 original size:54 final size:54
Alignment explanation
Indices: 14074607--14074721 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
14074597 TGTAAACCGG
* * * *
14074607 CAAACCATAAAATTTTAAAAATCTCATAAGTAAAAGGTTGTGATCATAAATCGG
1 CAAACCATAAAATTCTAAAAATCTCATAAGTAAAAGGTTGCGATCAAAAATCGA
* * * **
14074661 TAAACCGTAAGATTCTAAAAATCTCATAAGTAGGAGGTTGCGAT-AAAAGATCGA
1 CAAACCATAAAATTCTAAAAATCTCATAAGTAAAAGGTTGCGATCAAAA-ATCGA
14074715 CAAACCA
1 CAAACCA
14074722 GGAGATTTTG
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
53 3 0.06
54 46 0.94
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.24
Consensus pattern (54 bp):
CAAACCATAAAATTCTAAAAATCTCATAAGTAAAAGGTTGCGATCAAAAATCGA
Found at i:14080094 original size:26 final size:26
Alignment explanation
Indices: 14080065--14080172 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14080055 TGGTACAAAT
14080065 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14080091 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14080117 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14080143 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14080169 TGAT
1 TGAT
14080173 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14087091 original size:26 final size:26
Alignment explanation
Indices: 14087042--14087148 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14087032 TGGTACAAAT
14087042 TGATAATGGGTT-GGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14087067 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14087093 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14087119 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14087145 TGAT
1 TGAT
14087149 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 11 0.14
26 65 0.86
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14091583 original size:19 final size:19
Alignment explanation
Indices: 14091559--14091598 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14091549 TAACATATTT
14091559 AAAAATTCAAAAATATATA
1 AAAAATTCAAAAATATATA
** *
14091578 AAAAATTGTATAATATATA
1 AAAAATTCAAAAATATATA
14091597 AA
1 AA
14091599 TTACATAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAAATTCAAAAATATATA
Found at i:14091622 original size:12 final size:12
Alignment explanation
Indices: 14091605--14091638 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
14091595 TAAATTACAT
14091605 AAAATAAATATA
1 AAAATAAATATA
14091617 AAAATATAATATA
1 AAAATA-AATATA
14091630 AAATATAAA
1 AAA-ATAAA
14091639 GAATTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.30
13 11 0.55
14 3 0.15
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AAAATAAATATA
Found at i:14091629 original size:13 final size:12
Alignment explanation
Indices: 14091586--14091637 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
14091576 TAAAAAATTG
14091586 TATAATATATAAA
1 TATAATATA-AAA
*
14091599 T-T-ACATAAAA
1 TATAATATAAAA
14091609 TA-AATATAAAAA
1 TATAATAT-AAAA
14091621 TATAATATAAAA
1 TATAATATAAAA
14091633 TATAA
1 TATAA
14091638 AGAATTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
10 4 0.12
11 7 0.21
12 16 0.48
13 6 0.18
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (12 bp):
TATAATATAAAA
Found at i:14091799 original size:44 final size:43
Alignment explanation
Indices: 14091695--14091804 Score: 116
Period size: 42 Copynumber: 2.5 Consensus size: 43
14091685 TATTAAATTC
* * * * *
14091695 AAAAATTAAAATTTTTTATAATATATAAATGATATAAAAAAAG
1 AAAAATAAAAAATTTATATAAAATATAAATAATATAAAAAAAG
* *
14091738 AAAAATATAAAA-TTATATAAAATATAAATAAT-TCAAAAAAGG
1 AAAAATAAAAAATTTATATAAAATATAAATAATAT-AAAAAAAG
14091780 AAAAAATAAAAAATTTATATTAAAA
1 -AAAAATAAAAAATTTATA-TAAAA
14091805 ATTTTAAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
41 1 0.02
42 24 0.44
43 20 0.36
44 5 0.09
45 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (43 bp):
AAAAATAAAAAATTTATATAAAATATAAATAATATAAAAAAAG
Found at i:14093708 original size:40 final size:39
Alignment explanation
Indices: 14093629--14093708 Score: 108
Period size: 39 Copynumber: 2.0 Consensus size: 39
14093619 TGATATGCTT
* * *
14093629 TCATAATCTGTATAGAGAATTTGCACTTGAAGTTCAGAC
1 TCATAATATGTATAGAGAATTTGCAATTGAACTTCAGAC
14093668 TCATAATATGTATAGAGAATATTGCAATTGAAACTT-AGAC
1 TCATAATATGTATAGAGAAT-TTGCAATTG-AACTTCAGAC
14093708 T
1 T
14093709 GTTCATGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
39 19 0.53
40 13 0.36
41 4 0.11
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (39 bp):
TCATAATATGTATAGAGAATTTGCAATTGAACTTCAGAC
Found at i:14100838 original size:23 final size:23
Alignment explanation
Indices: 14100811--14100857 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
14100801 TCTGACTTGG
* *
14100811 TTCTACTGATACTTTTATGTACT
1 TTCTACTGATACTTCTATGCACT
14100834 TTCTACTGATACTTCTATGCACT
1 TTCTACTGATACTTCTATGCACT
14100857 T
1 T
14100858 CTATTGGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.49
Consensus pattern (23 bp):
TTCTACTGATACTTCTATGCACT
Found at i:14101558 original size:13 final size:13
Alignment explanation
Indices: 14101537--14101566 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14101527 GTTGCGGTTG
14101537 AAAAATGCTTTTC
1 AAAAATGCTTTTC
*
14101550 AAAAGTGCTTTTC
1 AAAAATGCTTTTC
14101563 AAAA
1 AAAA
14101567 TGTTGTGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (13 bp):
AAAAATGCTTTTC
Found at i:14104551 original size:2 final size:2
Alignment explanation
Indices: 14104544--14105312 Score: 1531
Period size: 2 Copynumber: 385.0 Consensus size: 2
14104534 TACATTAAAA
14104544 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104586 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104628 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104670 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104712 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104754 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104796 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104838 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104880 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104922 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14104964 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105006 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105048 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105090 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105132 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105174 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105216 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105258 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14105300 AG AG AG AG -G AG AG
1 AG AG AG AG AG AG AG
14105313 TACTTGGGCA
Statistics
Matches: 766, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
1 1 0.00
2 765 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14106684 original size:30 final size:30
Alignment explanation
Indices: 14106644--14106705 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
14106634 AACTCTTAAA
* * * *
14106644 CCTTTTTACTTTTCCCTCAAAATTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
14106674 CCTTTCTACTTTCCCCCCAAAACTTTTACT
1 CCTTTCTACTTTCCCCCCAAAACTTTTACT
14106704 CC
1 CC
14106706 CCTTCTATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.19, C:0.35, G:0.00, T:0.45
Consensus pattern (30 bp):
CCTTTCTACTTTCCCCCCAAAACTTTTACT
Found at i:14108609 original size:29 final size:29
Alignment explanation
Indices: 14108553--14108617 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
14108543 TTGGCCTTAT
* *
14108553 TTGATTCTTTTTAATAGTACATAAACTAAA
1 TTGA-TCTATTTAATAGTACAGAAACTAAA
* * *
14108583 TTGATCTATTTAATAGTAGAGAGACTAAC
1 TTGATCTATTTAATAGTACAGAAACTAAA
14108612 TTGATC
1 TTGATC
14108618 AAGTCCTTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (29 bp):
TTGATCTATTTAATAGTACAGAAACTAAA
Found at i:14110207 original size:21 final size:20
Alignment explanation
Indices: 14110183--14110228 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
14110173 TTTTTAAAAC
*
14110183 TTTTTATGAA-ATTTTGTAAT
1 TTTTTATCAATATTTTG-AAT
14110203 TTTTTATCAATATTTTGAAT
1 TTTTTATCAATATTTTGAAT
14110223 TCTTTT
1 T-TTTT
14110229 GTGATTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (20 bp):
TTTTTATCAATATTTTGAAT
Found at i:14110341 original size:18 final size:18
Alignment explanation
Indices: 14110303--14110341 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
14110293 ATACCAATTT
*
14110303 ATTATTTGAGTTAATCGA
1 ATTATTTGAGTTAATCAA
*
14110321 ATTATTTGAGTTATTCAA
1 ATTATTTGAGTTAATCAA
14110339 ATT
1 ATT
14110342 GTAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (18 bp):
ATTATTTGAGTTAATCAA
Found at i:14111479 original size:3 final size:3
Alignment explanation
Indices: 14111471--14111504 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
14111461 GAAGCTAAAC
*
14111471 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14111505 CAAATATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:14111705 original size:21 final size:23
Alignment explanation
Indices: 14111650--14111705 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 23
14111640 TTATAATATG
*
14111650 TATACATTTTTTTTTCTGAATTTT
1 TATACATTTTTATTTCT-AATTTT
* *
14111674 TA-ATATATTTATTTCT-ATTTT
1 TATACATTTTTATTTCTAATTTT
14111695 TATA-ATTTTTA
1 TATACATTTTTA
14111706 AAATTTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 13 0.48
22 1 0.04
23 11 0.41
24 2 0.07
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (23 bp):
TATACATTTTTATTTCTAATTTT
Found at i:14112193 original size:32 final size:32
Alignment explanation
Indices: 14112139--14112210 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
14112129 ATATAATGTC
* * *
14112139 TAAATAATTCAAAAAATTTAAAAAT-ATTTTT
1 TAAAAAATTCAAAAAATATAAAAATAAATTTT
* *
14112170 TATAAAATTCTAAAATATATAAAAATAAATTTT
1 TAAAAAATTC-AAAAAATATAAAAATAAATTTT
14112203 TAAAAAAT
1 TAAAAAAT
14112211 AAAAATATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 8 0.24
32 13 0.39
33 12 0.36
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (32 bp):
TAAAAAATTCAAAAAATATAAAAATAAATTTT
Found at i:14112197 original size:23 final size:21
Alignment explanation
Indices: 14112171--14112217 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
14112161 AATATTTTTT
14112171 ATAAAATTCTAAAATATATAAAA
1 ATAAAATTCTAAAA-A-ATAAAA
* *
14112194 ATAAATTTTTAAAAAATAAAA
1 ATAAAATTCTAAAAAATAAAA
14112215 ATA
1 ATA
14112218 TTATATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 1 0.05
23 12 0.55
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAAAATTCTAAAAAATAAAA
Found at i:14112525 original size:31 final size:31
Alignment explanation
Indices: 14112458--14112525 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
14112448 ATAAACTTAA
* * *
14112458 TTGTCATGTGATACATTTTCATTGGTTGAAT
1 TTGTCACGTGACACATTTTCATTGGATGAAT
* *
14112489 ATGTCACGTGACACATTTTGATTGGCAT-AAT
1 TTGTCACGTGACACATTTTCATTGG-ATGAAT
14112520 TTGTCA
1 TTGTCA
14112526 ACTGGTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (31 bp):
TTGTCACGTGACACATTTTCATTGGATGAAT
Found at i:14120685 original size:12 final size:12
Alignment explanation
Indices: 14120668--14120692 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14120658 AAAAAAAAAA
14120668 AACAACAACAAT
1 AACAACAACAAT
14120680 AACAACAACAAT
1 AACAACAACAAT
14120692 A
1 A
14120693 CTTACATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (12 bp):
AACAACAACAAT
Found at i:14122224 original size:3 final size:3
Alignment explanation
Indices: 14122216--14122240 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14122206 ATTAAGTCCT
14122216 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
14122241 CATCTAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:14122270 original size:3 final size:3
Alignment explanation
Indices: 14122262--14123117 Score: 1712
Period size: 3 Copynumber: 285.3 Consensus size: 3
14122252 ATCTATTGCT
14122262 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122310 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122358 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122406 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122454 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122502 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122550 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122598 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122646 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122694 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122742 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122790 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122838 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122886 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122934 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14122982 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14123030 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14123078 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14123118 CTAACAGTTT
Statistics
Matches: 853, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 853 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14125392 original size:26 final size:26
Alignment explanation
Indices: 14125330--14125394 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
14125320 GTTTAGCAAC
14125330 ACTTTTGAAAAA-TGCTTTTAAAAAGT
1 ACTTTT-AAAAAGTGCTTTTAAAAAGT
** *
14125356 -CTTGTGCAAAAGTGCTTTTAAGAAGT
1 ACTT-TTAAAAAGTGCTTTTAAAAAGT
14125382 ACTTTTAAAAAGT
1 ACTTTTAAAAAGT
14125395 TTGGTTTAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
25 7 0.23
26 21 0.68
27 3 0.10
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (26 bp):
ACTTTTAAAAAGTGCTTTTAAAAAGT
Found at i:14130967 original size:87 final size:86
Alignment explanation
Indices: 14130814--14131276 Score: 362
Period size: 87 Copynumber: 5.4 Consensus size: 86
14130804 AGACTTAATG
* * * *
14130814 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-C---TTTAATCCGCTCCACTGTAACTTC
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTATTTTAATCCGCTCCACTGTAACTTC
* *
14130875 GGGGAGATAAGATAGTGTCTT
66 AGGGAGATAAGATACTGTCTT
* *
14130896 CGATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTCTTATTTTAATCCGCTCTACTGTAACTT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC-TATTTTAATCCGCTCCACTGTAACTT
* *
14130961 CAGGGAGATAGGATAGTGTCTT
65 CAGGGAGATAAGATACTGTCTT
** ** * *
14130983 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAA-
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTA-T-TTTAATCCGCTCCACTGTAAC
* *
14131047 TCTCAGGGAGATAAGA-CCTGAT-GT
63 T-TCAGGGAGATAAGATACTG-TCTT
* ** * *
14131071 -GATCTTCTCTACTGTAA-CTTCAGAGAGATAAGATC-C---TTTAATCCGCTCCATTGTAA-TC
1 CGATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCTCTATTTTAATCCGCTCCACTGTAACT-
* * *
14131129 TCAAGGAGATAGGATTACTATCTT
64 TCAGGGAGATAAGA-TACTGTCTT
* ** * * * *
14131153 TGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCGCTGTAACCT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT-ATTTTAATCCGCTCCACTGTAACTT
14131218 CAGGGAGATAAGAT-CTGAAATTCTT
65 CAGGGAGATAAGATACTG----TCTT
* * * *
14131243 TGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
14131277 CCTGTATAAT
Statistics
Matches: 305, Mismatches: 50, Indels: 44
0.76 0.13 0.11
Matches are distributed among these distances:
80 29 0.10
81 1 0.00
82 34 0.11
83 30 0.10
84 2 0.01
86 3 0.01
87 109 0.36
88 33 0.11
89 29 0.10
90 35 0.11
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (86 bp):
CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTATTTTAATCCGCTCCACTGTAACTTC
AGGGAGATAAGATACTGTCTT
Found at i:14131051 original size:46 final size:43
Alignment explanation
Indices: 14130826--14131276 Score: 274
Period size: 44 Copynumber: 10.5 Consensus size: 43
14130816 ATCTACTCTG
* * * *
14130826 CTGTAACCTCAGAGAGATAAGATC----CTTTAATCCGCTCCA
1 CTGTAATCTCAGGGAGATAAGATCTATTCTTTGATCTGCTCCA
* * *
14130865 CTGTAA-CTTCGGGGAGATAAGA--TAGTGTCTTCGATCTGCTCCG
1 CTGTAATC-TCAGGGAGATAAGATCTA-T-TCTTTGATCTGCTCCA
* * * * * *
14130908 CTGTAATCTTAGGGAGATAAGATCTCTTATTTTAATCCGCTCTA
1 CTGTAATCTCAGGGAGATAAGATCTATT-CTTTGATCTGCTCCA
* * *
14130952 CTGTAA-CTTCAGGGAGATAGGA--TAGTGTCTTCGATCTGCTCCG
1 CTGTAATC-TCAGGGAGATAAGATCTA-T-TCTTTGATCTGCTCCA
* *
14130995 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCT---ATTCTTTGATCTGCTCCA
* * * *
14131041 CTGTAATCTCAGGGAGATAAGACCTGA---TGTGATCTTCTCTA
1 CTGTAATCTCAGGGAGATAAGATCT-ATTCTTTGATCTGCTCCA
* * *
14131082 CTGTAA-CTTCAGAGAGATAAGATC----CTTTAATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATCTATTCTTTGATCTGCTCCA
* * * *
14131121 TTGTAATCTCAAGGAGATAGGAT-TACTATCTTTGATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTA-T-TCTTTGATCTGCTCCA
* * ** *
14131165 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTAT-TCTTTGATCTGCTCCA
* * *
14131209 CTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCT---ATTCTTTGATCTGCTCCA
14131255 CTGTAATCTCAGGGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGA
14131277 CCTGTATAAT
Statistics
Matches: 312, Mismatches: 67, Indels: 59
0.71 0.15 0.13
Matches are distributed among these distances:
38 1 0.00
39 44 0.14
40 2 0.01
41 29 0.09
42 1 0.00
43 60 0.19
44 102 0.33
45 3 0.01
46 67 0.21
47 2 0.01
48 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (43 bp):
CTGTAATCTCAGGGAGATAAGATCTATTCTTTGATCTGCTCCA
Found at i:14145824 original size:57 final size:57
Alignment explanation
Indices: 14145755--14145869 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
14145745 ATGCTATGGT
*
14145755 TTGTTCACGTCTAGATTTATCATATGTAGTCAGTGCAGTTAGCAAATACATGGCGAA
1 TTGTTCACGTCTAGATTTATCATATGCAGTCAGTGCAGTTAGCAAATACATGGCGAA
14145812 TTGTTCACGTCTAGATTTATCATATGCAGTCAGTGCAGTTAGCAAATACATGGCGAA
1 TTGTTCACGTCTAGATTTATCATATGCAGTCAGTGCAGTTAGCAAATACATGGCGAA
14145869 T
1 T
14145870 CCTAGTAAAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (57 bp):
TTGTTCACGTCTAGATTTATCATATGCAGTCAGTGCAGTTAGCAAATACATGGCGAA
Found at i:14146306 original size:40 final size:40
Alignment explanation
Indices: 14146259--14146339 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
14146249 TTCATGAGAG
14146259 AACAAAACACATCAATATTTAGTATCATTTTGTTCATGAT
1 AACAAAACACATCAATATTTAGTATCATTTTGTTCATGAT
14146299 AACAAAACACATCAATATTTAGTATCATTTTGTTCATGAT
1 AACAAAACACATCAATATTTAGTATCATTTTGTTCATGAT
14146339 A
1 A
14146340 TTATTGCTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (40 bp):
AACAAAACACATCAATATTTAGTATCATTTTGTTCATGAT
Found at i:14148456 original size:16 final size:17
Alignment explanation
Indices: 14148435--14148472 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
14148425 GGGCTTTGGC
*
14148435 AAATATGA-CATTGTGG
1 AAATATGAGCAATGTGG
14148451 AAATATGAGTCAATGTGG
1 AAATATGAG-CAATGTGG
14148469 AAAT
1 AAAT
14148473 TTGTTGAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (17 bp):
AAATATGAGCAATGTGG
Found at i:14150034 original size:11 final size:12
Alignment explanation
Indices: 14150012--14150038 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14150002 AGCTGTATCA
14150012 TTCACTTTTTTT
1 TTCACTTTTTTT
14150024 TTCACTTTTTTT
1 TTCACTTTTTTT
14150036 TTC
1 TTC
14150039 CAATTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (12 bp):
TTCACTTTTTTT
Found at i:14154577 original size:33 final size:33
Alignment explanation
Indices: 14154535--14154602 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
14154525 GCAATTTGTT
14154535 CTCTATTTCTATTCCATTTCTACTCTATGGTTA
1 CTCTATTTCTATTCCATTTCTACTCTATGGTTA
*
14154568 CTCTATTTCTATTTCATTTCTACTCTATGGTTA
1 CTCTATTTCTATTCCATTTCTACTCTATGGTTA
14154601 CT
1 CT
14154603 TCAACAATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.24, G:0.06, T:0.53
Consensus pattern (33 bp):
CTCTATTTCTATTCCATTTCTACTCTATGGTTA
Found at i:14155301 original size:22 final size:22
Alignment explanation
Indices: 14155273--14155319 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
14155263 ACTAAGAGCC
14155273 AAGGTTAAGAGATATAGAAAGG
1 AAGGTTAAGAGATATAGAAAGG
*
14155295 AAGGTTAAGAGATATGGAAAGG
1 AAGGTTAAGAGATATAGAAAGG
14155317 AAG
1 AAG
14155320 ATAGAGCTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (22 bp):
AAGGTTAAGAGATATAGAAAGG
Found at i:14163717 original size:37 final size:37
Alignment explanation
Indices: 14163667--14163757 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 37
14163657 TTTCAAAAAT
*
14163667 AATATTATTTTAATAGT-TTAATATTAAATTAA-ATTA
1 AATATTATCTTAATAGTATT-ATATTAAATTAATATTA
* *
14163703 AATACTTATCTTAATAGTATTTTATTAATTTAATATTA
1 AATA-TTATCTTAATAGTATTATATTAAATTAATATTA
*
14163741 AAGTGATTATTTTAATA
1 AA-T-ATTATCTTAATA
14163758 TTAAATTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
36 4 0.09
37 22 0.48
38 8 0.17
39 11 0.24
40 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (37 bp):
AATATTATCTTAATAGTATTATATTAAATTAATATTA
Found at i:14166435 original size:62 final size:62
Alignment explanation
Indices: 14166336--14166460 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
14166326 ACTTAGTAGC
*
14166336 TATAGTAAATTTTTCACATGGTCTTTCTACAAAGGTCCATACATTGCTTCTTTCAAATTGAT
1 TATAGTAAATTTTTCACATGGTCTTTCTACAAAGGTCCATACATTGCTTCTATCAAATTGAT
*
14166398 TATAGTAAATTTTTCACATGGTCTTTCTACAAGGGTCCATACATTGCTTCTATCAAATTGAT
1 TATAGTAAATTTTTCACATGGTCTTTCTACAAAGGTCCATACATTGCTTCTATCAAATTGAT
14166460 T
1 T
14166461 TAATTCCTCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.42
Consensus pattern (62 bp):
TATAGTAAATTTTTCACATGGTCTTTCTACAAAGGTCCATACATTGCTTCTATCAAATTGAT
Found at i:14169036 original size:38 final size:38
Alignment explanation
Indices: 14168994--14169068 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
14168984 ATATTCTAAA
*
14168994 AGGGCACCCATCTTCCCTACATCTAGCACTAATCCTCT
1 AGGGCACCCATCTTCCCTACACCTAGCACTAATCCTCT
* *
14169032 AGGGCACCCATCTTCCCTACACCTAGCCCTAGTCCTC
1 AGGGCACCCATCTTCCCTACACCTAGCACTAATCCTC
14169069 CTCTTTTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.43, G:0.12, T:0.24
Consensus pattern (38 bp):
AGGGCACCCATCTTCCCTACACCTAGCACTAATCCTCT
Found at i:14169692 original size:3 final size:3
Alignment explanation
Indices: 14169684--14169720 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14169674 GCTTCAATAA
14169684 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
14169721 AACTGATATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:14176472 original size:9 final size:9
Alignment explanation
Indices: 14176447--14176513 Score: 53
Period size: 9 Copynumber: 7.2 Consensus size: 9
14176437 ATGTAAATTG
14176447 TAATATACA
1 TAATATACA
* *
14176456 TAACATACC
1 TAATATACA
14176465 TAATATACA
1 TAATATACA
* *
14176474 TATATAAATA
1 TA-ATATACA
14176484 GTAATATACA
1 -TAATATACA
**
14176494 TAACGTACA
1 TAATATACA
*
14176503 TGATATACA
1 TAATATACA
14176512 TA
1 TA
14176514 CTAATTTTTT
Statistics
Matches: 42, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
9 30 0.71
10 10 0.24
11 2 0.05
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.31
Consensus pattern (9 bp):
TAATATACA
Found at i:14176488 original size:38 final size:38
Alignment explanation
Indices: 14176430--14176513 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
14176420 AACACTACAC
* * *
14176430 ATACATAATGTAAATTGTAATATACATAACATACCTAAT
1 ATACAT-ATATAAATAGTAATATACATAACATACATAAT
* *
14176469 ATACATATATAAATAGTAATATACATAACGTACATGAT
1 ATACATATATAAATAGTAATATACATAACATACATAAT
14176507 ATACATA
1 ATACATA
14176514 CTAATTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 34 0.85
39 6 0.15
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (38 bp):
ATACATATATAAATAGTAATATACATAACATACATAAT
Found at i:14179786 original size:8 final size:8
Alignment explanation
Indices: 14179752--14179803 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
14179742 TAGTGATGTG
*
14179752 AATAATAA
1 AATATTAA
*
14179760 AGTATATAA
1 AATAT-TAA
14179769 AATA-TAA
1 AATATTAA
14179776 AATATTAA
1 AATATTAA
*
14179784 AATATCAA
1 AATATTAA
*
14179792 AATATTAG
1 AATATTAA
14179800 AATA
1 AATA
14179804 ATAATAATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 23 0.64
9 6 0.17
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:14179793 original size:16 final size:15
Alignment explanation
Indices: 14179756--14179803 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
14179746 GATGTGAATA
*
14179756 ATAAAGTATATAAAAT
1 ATAAAATAT-TAAAAT
14179772 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
14179787 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
14179803 A
1 A
14179804 ATAATAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:14179973 original size:20 final size:20
Alignment explanation
Indices: 14179916--14179975 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
14179906 AATACTACAT
14179916 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
14179935 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
14179958 AAATATGTACATAATATA
1 AAATATGTACATAATATA
14179976 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:14180014 original size:22 final size:23
Alignment explanation
Indices: 14179953--14180023 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
14179943 ACGTGATAAT
*
14179953 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
14179976 GTGTAAAAAATACATACATAATATA
1 AT-T-AAAAATATATACATAATATA
*
14180001 ATT-AAAATATATACATAAGATA
1 ATTAAAAATATATACATAATATA
14180023 A
1 A
14180024 CATGTAGAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 18 0.45
23 1 0.03
24 2 0.05
25 19 0.47
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:14180072 original size:29 final size:28
Alignment explanation
Indices: 14179968--14180073 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 28
14179958 AAATATGTAC
* *
14179968 ATAATATAGT-GTAAAA-A-ATACATAC
1 ATAATATAGTATTAAAATATATACATAA
14179993 ATAATATA--ATTAAAATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
* * * *
14180019 GATAACAT-GTA-GAAAA-A-AAATATAA
1 -ATAATATAGTATTAAAATATATACATAA
14180044 ATAATATAGTATTAAAGATATATACATAA
1 ATAATATAGTATTAAA-ATATATACATAA
14180073 A
1 A
14180074 ATAGTATAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 18
0.68 0.11 0.20
Matches are distributed among these distances:
24 11 0.18
25 18 0.30
26 11 0.18
27 11 0.18
28 2 0.03
29 7 0.12
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (28 bp):
ATAATATAGTATTAAAATATATACATAA
Found at i:14180171 original size:23 final size:25
Alignment explanation
Indices: 14180128--14180173 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14180118 TATACCTAAT
14180128 ATATTAAAAGAATATATATAATATG
1 ATATTAAAAGAATATATATAATATG
*
14180153 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
14180174 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATG
Found at i:14180303 original size:65 final size:65
Alignment explanation
Indices: 14180199--14180325 Score: 236
Period size: 65 Copynumber: 2.0 Consensus size: 65
14180189 AGGGAGAGAG
*
14180199 TGGGTGATTTCCGGCCACAAGGCCGGCCACCGTCCGGTCACCGAACCGCTGTCGGTGCCACCATA
1 TGGGTGATTTCCGGCCACAAGGCCAGCCACCGTCCGGTCACCGAACCGCTGTCGGTGCCACCATA
*
14180264 TGGGTGATTTCCGGCCACAAGGCCAGCCACCGTCCGGTCACCGAACCGCTGTCGGTGTCACC
1 TGGGTGATTTCCGGCCACAAGGCCAGCCACCGTCCGGTCACCGAACCGCTGTCGGTGCCACC
14180326 GTACACGGCA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.17, C:0.37, G:0.29, T:0.17
Consensus pattern (65 bp):
TGGGTGATTTCCGGCCACAAGGCCAGCCACCGTCCGGTCACCGAACCGCTGTCGGTGCCACCATA
Found at i:14180549 original size:16 final size:16
Alignment explanation
Indices: 14180509--14180550 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
14180499 TAATCTCCAA
14180509 ACAAAAACTAGCCTCT
1 ACAAAAACTAGCCTCT
* *
14180525 CCAAAAACTAGCCTTT
1 ACAAAAACTAGCCTCT
*
14180541 ACAATAACTA
1 ACAAAAACTA
14180551 TTCTCCTTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.45, C:0.29, G:0.05, T:0.21
Consensus pattern (16 bp):
ACAAAAACTAGCCTCT
Found at i:14180655 original size:15 final size:15
Alignment explanation
Indices: 14180626--14180659 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14180616 AAAACTTCTT
* *
14180626 AAAAAAAACTTCTCA
1 AAAAAAAAATCCTCA
14180641 AAAAAAAAATCCTCA
1 AAAAAAAAATCCTCA
14180656 AAAA
1 AAAA
14180660 CCCCCTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.18, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAAAAAAATCCTCA
Found at i:14180659 original size:14 final size:14
Alignment explanation
Indices: 14180611--14180647 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
14180601 TTCTCCCCCC
14180611 CAAAAAAAACTTCT
1 CAAAAAAAACTTCT
*
14180625 TAAAAAAAACTTCT
1 CAAAAAAAACTTCT
14180639 CAAAAAAAA
1 CAAAAAAAA
14180648 AATCCTCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.65, C:0.16, G:0.00, T:0.19
Consensus pattern (14 bp):
CAAAAAAAACTTCT
Found at i:14181699 original size:95 final size:91
Alignment explanation
Indices: 14181485--14181887 Score: 373
Period size: 95 Copynumber: 4.4 Consensus size: 91
14181475 ACGTGAGCCA
* * * * * *
14181485 AGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTT-AAAACA-AAATTTG-TAAAACAGAT-
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGCAAACATAAA-TTGAAAAAAAAAATA
* * ** *
14181545 TTTGAAAATACTTCGGTATGTGACCCG
65 ATTGAAAATACCTCGGCGTGTGACCTG
* *
14181572 AGGCTCGACTCACCTCTCATAATATGAGTTGA-TTTTTGCAAAGCATAAATTGGAAAAAAAAAAC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGCAAA-CATAAATT-G-AAAAAAAAA-
14181636 ATCAATTGAAAATACCTCGGCGTGTGACCTG
62 AT-AATTGAAAATACCTCGGCGTGTGACCTG
14181667 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAGA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTTG-CAAACATAAATTGAAAAAAAAA-A
* *
14181732 -AATTGAAAATACCTC--AGTGTGTCCTG
63 TAATTGAAAATACCTCGGCGTGTGACCTG
* * *
14181758 AGGCTGAACTCACCTCTCACAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTGAAAAACAAA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTT-G-CAAACATAAA-TTGAAAAAAAAA
* * *
14181822 AT--TTGAAAATACCTCAGCGTGTGA-GTCA
62 ATAATTGAAAATACCTCGGCGTGTGACCT-G
* * *
14181850 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
14181888 TTGAAACACA
Statistics
Matches: 269, Mismatches: 29, Indels: 32
0.82 0.09 0.10
Matches are distributed among these distances:
87 33 0.12
88 3 0.01
89 4 0.01
90 17 0.06
91 58 0.22
92 56 0.21
93 17 0.06
95 62 0.23
96 1 0.00
97 14 0.05
98 4 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (91 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGCAAACATAAATTGAAAAAAAAAATAA
TTGAAAATACCTCGGCGTGTGACCTG
Found at i:14181780 original size:91 final size:90
Alignment explanation
Indices: 14181485--14181995 Score: 404
Period size: 91 Copynumber: 5.6 Consensus size: 90
14181475 ACGTGAGCCA
* * * *
14181485 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTG--TAAAACAGA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAACAGAAA-TTGAAAAAAAAAGA
** * * * *
14181544 TTTTGAAAATACTTCGGTATGTGACCCG
65 AATTGAAAATACCTCAG--TGTGTCCTG
* * * *
14181572 AGGCTCGACTCACCTCTCATAATATGAGTTGA--TTTTTGCAAAGCATAAATTGGAAAAAAAAAA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTG-AAAACAGAAATT-G-AAAAAAAAA
* * *
14181635 CATCAATTGAAAATACCTCGGCGTGTGACCTG
63 GA--AATTGAAAATACCTC--AGTGTGTCCTG
*
14181667 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAGA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAAAAAAAGA
14181732 AATTGAAAATACCTCAGTGTGTCCTG
65 AATTGAAAATACCTCAGTGTGTCCTG
* *
14181758 AGGCTGAACTCACCTCTCACAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTG-AAAAACAA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT-G-AAAACAGAAA-TTGAAAAAAAAA
* * ** *
14181821 -AATTTGAAAATACCTCAGCGTGTGAGTCA
63 GAAATTGAAAATACCTCAGTGTGT-CCT-G
* * * * *
14181850 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTTGAAACACAGAAATTG--AAGAACAG
1 AGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTTTGAAA-ACAGAAATTGAAAAAAAAAG
* * * * *
14181913 AAATGGAAAACACCTTA--GCGTCTTG
64 AAATTGAAAATACCTCAGTGTGTCCTG
* * *
14181938 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
14181996 TACCTCAACG
Statistics
Matches: 355, Mismatches: 44, Indels: 48
0.79 0.10 0.11
Matches are distributed among these distances:
87 54 0.15
88 30 0.08
89 10 0.03
90 28 0.08
91 65 0.18
92 57 0.16
93 32 0.09
95 60 0.17
96 2 0.01
97 17 0.05
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (90 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAAAGAA
ATTGAAAATACCTCAGTGTGTCCTG
Found at i:14181830 original size:13 final size:14
Alignment explanation
Indices: 14181798--14181830 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
14181788 GATTTTTTTG
14181798 GAAAAACAAAATTT
1 GAAAAACAAAATTT
14181812 GAAAAACAAAATTT
1 GAAAAACAAAATTT
14181826 GAAAA
1 GAAAA
14181831 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.67, C:0.06, G:0.09, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:14181861 original size:92 final size:90
Alignment explanation
Indices: 14181459--14181995 Score: 436
Period size: 87 Copynumber: 5.9 Consensus size: 90
14181449 AAAATAGAAA
* ** * * *
14181459 TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT
1 TTGAAAATACCTCAGCGTGTGA-CCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT
* * *
14181522 --AAAACA-AAATTTGTAAAACAGATT
65 GAAAAACAGAAA-TTGAAAAACAAAAT
* * ** * *
14181546 TTGAAAATACTTCGGTATGTGACCCGAGGCTCGACTCACCTCTCATAATATGAGTTGA--TTTTT
1 TTGAAAATACCTCAGCGTGTGA-CCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT
* * * *
14181609 GCAAAGCATAAATTGGAAAAAAAAAACAT
65 GAAAAACAGAAATT-G-AAAAACAAA-AT
*
14181638 CAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 ---TTGAAAATACCTCAGCGTGTGACC-GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
* * * *
14181703 TTTGACAAACATAAATTGAAAAAAAAAGAAA
62 TTTGAAAAACAGAAATTG-AAAAACAA-AAT
* *
14181734 TTGAAAATACCTCA--GTGTGTCCTGAGGCTGAACTCACCTCTCACAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGTGTGACC-GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT
14181797 GGAAAAACA-AAATTTGAAAAACAAAAT
65 -GAAAAACAGAAA-TTGAAAAACAAAAT
* * * * *
14181824 TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
1 TTGAAAATACCTCAGCGTGTGA-CCGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTT
* *
14181889 TGAAACACAGAAATTGAAGAACAGAAA-
64 TGAAAAACAGAAATTGAAAAACA-AAAT
* * * * * * * *
14181916 TGGAAAACACCTTAGCGTCT---TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG
1 TTGAAAATACCTCAGCGTGTGACCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTG
*
14181978 AAAGACAGAAATTGAAAA
66 AAAAACAGAAATTGAAAA
14181996 TACCTCAACG
Statistics
Matches: 379, Mismatches: 50, Indels: 42
0.80 0.11 0.09
Matches are distributed among these distances:
87 76 0.20
88 30 0.08
89 7 0.02
90 20 0.05
91 63 0.17
92 76 0.20
93 27 0.07
94 2 0.01
95 50 0.13
96 11 0.03
97 17 0.04
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (90 bp):
TTGAAAATACCTCAGCGTGTGACCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTG
AAAAACAGAAATTGAAAAACAAAAT
Found at i:14182025 original size:75 final size:74
Alignment explanation
Indices: 14181932--14182599 Score: 785
Period size: 75 Copynumber: 8.9 Consensus size: 74
14181922 ACACCTTAGC
* * *
14181932 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAAAAATTGAAAAT
14181997 ACCTCAACGT
65 ACCTCAACGT
* * *
14182007 GTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTGACAAATAAAAATTGAAATT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAAAAATTGAAAAT
*
14182070 ACCTC-A-GC
65 ACCTCAACGT
* * *
14182078 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAAAAATTGAAAAT
14182143 ACCTCAACGT
65 ACCTCAACGT
*
14182153 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAAAAATTGAAAAT
14182216 ACCTCAACGT
65 ACCTCAACGT
* * * *
14182226 GTCCTGAGGCTCAACTTACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAAAAATTGAAAAT
14182291 ACCTCAACGT
65 ACCTCAACGT
*
14182301 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAAAAATTGAAAAT
*
14182364 ACCTCAGCGT
65 ACCTCAACGT
* * * * * *
14182374 GTCCTGAAGCTCAACTCACCTCTTGCAATATGACTTGATGTTTTTGAAAAACAGAAATTGAAGAA
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAAAAATT---G--
* * ** *
14182439 CAGAAATGGAAAACACCTCAGC
60 -A-AAAT----ACCTCAAC-GT
* * **
14182461 GTCTTGAGGTTCAACTCACCTCTCGCAATACGACCTGATTTTTTTGAAAGACAAAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAAAAATTGAAAAT
14182526 ACCTCAACGT
65 ACCTCAACGT
* * *
14182536 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAACATAAATTAAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAAAAATTGAAAAT
14182600 TGAAAATTGA
Statistics
Matches: 506, Mismatches: 60, Indels: 55
0.81 0.10 0.09
Matches are distributed among these distances:
71 36 0.07
72 4 0.01
73 177 0.35
74 18 0.04
75 199 0.39
76 6 0.01
78 1 0.00
80 4 0.01
81 2 0.00
82 3 0.01
84 1 0.00
86 7 0.01
87 48 0.09
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAAAAATTGAAAATA
CCTCAACGT
Found at i:14182321 original size:148 final size:148
Alignment explanation
Indices: 14181932--14182827 Score: 985
Period size: 148 Copynumber: 5.8 Consensus size: 148
14181922 ACACCTTAGC
* * *
14181932 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT
* *
14181997 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGACAAATAAAAA
66 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
*
14182062 TTGAAATTACCTC-A-GC
131 TTGAAATTACCTCAACGT
* * *
14182078 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT
14182143 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
66 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
14182208 TTGAAATTACCTCAACGT
131 TTGAAATTACCTCAACGT
* * *
14182226 GTCCTGAGGCTCAACTTACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT
14182291 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
66 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
*
14182356 TTGAAATTACCTCAGCGT
131 TTGAAATTACCTCAACGT
* * * * *
14182374 GTCCTGAAGCTCAACTCACCTCTTGCAATATGACTTGATGTTTTTGAAAAACAGAAATTGAAGAA
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT---G--
* * * **
14182439 CAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATACGACCTGATTT
61 -A-AAAT-------ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
*
14182502 TTTTGA-AAGACAAAAATTGAAAATACCTCAACGT
115 TTTTGACAA-ACAAAAATTGAAATTACCTCAACGT
* *
14182536 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAACATAAATTAAAAATT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTT------TGAA--AAACA--
* * * *
14182601 GAAAATTGAAAATACCCCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
54 G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
* * *
14182666 TTTGA-AAGACAGAAACTGAAAATACCTCAACGT
116 TTTGACAA-ACAAAAATTGAAATTACCTCAACGT
* * * *
14182699 GTCTTGAAGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAACATAAATTAAAAATT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTT------TGAA--AAACA--
* *
14182764 GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
54 G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
14182828 GAAAAGCAGA
Statistics
Matches: 673, Mismatches: 43, Indels: 53
0.88 0.06 0.07
Matches are distributed among these distances:
146 141 0.21
147 1 0.00
148 195 0.29
151 1 0.00
154 1 0.00
155 4 0.01
160 35 0.05
161 10 0.01
162 69 0.10
163 192 0.29
164 5 0.01
168 4 0.01
169 1 0.00
170 3 0.00
172 5 0.01
174 1 0.00
175 5 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (148 bp):
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAT
ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
TTGAAATTACCTCAACGT
Found at i:14182440 original size:14 final size:14
Alignment explanation
Indices: 14182417--14182451 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14182407 CTTGATGTTT
14182417 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
14182431 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
14182445 TGGAAAA
1 TTGAAAA
14182452 CACCTCAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:14182688 original size:163 final size:163
Alignment explanation
Indices: 14182280--14183207 Score: 870
Period size: 163 Copynumber: 5.5 Consensus size: 163
14182270 TGAAAAACAG
* * *
14182280 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
* * * *
14182343 TGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTTGCAATATGA
66 TGA-AAGACAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGA
* ** * * **
14182407 CTTGATGTTTTTGAAAAACAGAAATTGAAGAACAG-
130 GTTGAT-TTTTTTTAAAACATAAATT-AAAAATTGA
* * * * * *
14182442 AAATGGAAAACACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATACGACCTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
*
14182505 TGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
66 TGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAG
14182570 TTGATTTTTTTTAAAACATAAATTAAAAATTGA
131 TTGATTTTTTTTAAAACATAAATTAAAAATTGA
*
14182603 AAATTGAAAATACCCCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
* * *
14182668 TGAAAGACAGAAACTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACTTCTCGCAATATGAG
66 TGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAG
14182733 TTGATTTTTTTTAAAACATAAATTAAAAATTGA
131 TTGATTTTTTTTAAAACATAAATTAAAAATTGA
*
14182766 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAA
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT---
* * * * * *
14182831 AAGCAGAATTTGTAAGGCAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
63 --------TTT-T---G-AAAGA--CA-----A-AAATTGAAAATACCTCAACGTGTCTTGAAGC
* *
14182896 TTAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGCAGAAATTGAAAA
107 TCAACTCACCTCTCGCAATATGAGTTGATTTTT------T-----TTAAAA-CATAAATT-AAAA
**
14182961 ACAG-
159 ATTGA
* * * * * *
14182965 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA--TTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
* * ** * * *
14183028 TGAAA-AGCATAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGA
66 TGAAAGA-CAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGA
* ** *
14183092 GTTGA-TTTTTTGAAAAGCATAAATTGAAAAAACGG
130 GTTGATTTTTTTTAAAA-CATAAATT-AAAAATTGA
* *
14183127 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
*
14183192 TTTGAAAGACAGAAAT
64 TTTGAAAGACAAAAAT
14183208 AAAAACATCA
Statistics
Matches: 648, Mismatches: 69, Indels: 94
0.80 0.09 0.12
Matches are distributed among these distances:
160 39 0.06
161 54 0.08
162 101 0.16
163 194 0.30
164 33 0.05
166 16 0.02
167 1 0.00
172 4 0.01
173 54 0.08
174 3 0.00
175 1 0.00
178 1 0.00
179 5 0.01
180 1 0.00
181 4 0.01
182 1 0.00
185 1 0.00
186 3 0.00
187 57 0.09
193 1 0.00
197 1 0.00
198 6 0.01
199 61 0.09
200 6 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (163 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
TGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTTAAAACATAAATTAAAAATTGA
Found at i:14182965 original size:14 final size:13
Alignment explanation
Indices: 14182930--14182974 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
14182920 TTGATTTTTG
*
14182930 AAAAATAGAAATT
1 AAAAACAGAAATT
*
14182943 AAAAGCAGAAATT
1 AAAAACAGAAATT
14182956 GAAAAACAGAAATT
1 -AAAAACAGAAATT
14182970 AAAAA
1 AAAAA
14182975 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:14182995 original size:100 final size:101
Alignment explanation
Indices: 14182766--14183046 Score: 415
Period size: 100 Copynumber: 2.8 Consensus size: 101
14182756 TAAAAATTGA
*
14182766 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * * *
14182829 AAAAGCAGAATTTGTAAGGCAAAAATTGAAAAACAG
66 AAAAACAGAAATTGAAAAGCAAAAATTGAAAAACAG
*
14182865 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
14182930 AAAAATAGAAATT-AAAAGCAGAAATTGAAAAACAG
66 AAAAACAGAAATTGAAAAGCAAAAATTGAAAAACAG
* * * *
14182965 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
14183030 AAAAGCATAAATTGAAA
66 AAAAACAGAAATTGAAA
14183047 TTACCTCAGT
Statistics
Matches: 163, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
99 57 0.35
100 89 0.55
101 17 0.10
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (101 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAACAGAAATTGAAAAGCAAAAATTGAAAAACAG
Found at i:14183052 original size:73 final size:74
Alignment explanation
Indices: 14182954--14183121 Score: 239
Period size: 73 Copynumber: 2.3 Consensus size: 74
14182944 AAAGCAGAAA
* * * * *
14182954 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
14183019 GTTGA-TTT
66 GTTGATTTT
* * * * *
14183027 TTGAAAAGCATAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
14183092 GTTGATTTT
66 GTTGATTTT
14183101 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
14183122 AACGGAAATT
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
73 60 0.72
74 23 0.28
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:14199852 original size:22 final size:20
Alignment explanation
Indices: 14199753--14199861 Score: 67
Period size: 22 Copynumber: 5.0 Consensus size: 20
14199743 AATACTACAT
*
14199753 AAATATGTACAT-ATATAAA
1 AAATATATACATAATATAAA
14199772 AAATATATACGTGATAATATTAAA
1 AAATATATAC---ATAATA-TAAA
* *
14199796 AAAAATGTACATAATATAGTGTACA
1 AAATATATACATAATATA----A-A
*
14199821 AAATACATACATAATATAATTA
1 AAATATATACATAATATAA--A
*
14199843 AAATATATACATAAGATAA
1 AAATATATACATAATATAA
14199862 CATGTAGAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 19
0.71 0.09 0.19
Matches are distributed among these distances:
19 9 0.13
20 2 0.03
21 7 0.10
22 20 0.29
23 3 0.04
24 13 0.19
25 16 0.23
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.30
Consensus pattern (20 bp):
AAATATATACATAATATAAA
Found at i:14199910 original size:29 final size:28
Alignment explanation
Indices: 14199823--14199911 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 28
14199813 AGTGTACAAA
*
14199823 ATACATACATAATATA--ATTAAAATAT
1 ATACATAAATAATATAGTATTAAAATAT
* *
14199849 ATACATAAGATAACAT-GTA-GAAAA-A-
1 ATACATAA-ATAATATAGTATTAAAATAT
* *
14199874 AAATATAAATAATATAGTATTAAAGATAT
1 ATACATAAATAATATAGTATTAAA-ATAT
14199903 ATACATAAA
1 ATACATAAA
14199912 ATAGTATAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 13
0.68 0.13 0.19
Matches are distributed among these distances:
24 6 0.13
25 9 0.20
26 11 0.24
27 11 0.24
28 2 0.04
29 7 0.15
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (28 bp):
ATACATAAATAATATAGTATTAAAATAT
Found at i:14200009 original size:23 final size:25
Alignment explanation
Indices: 14199966--14200011 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14199956 TATACCTAAT
14199966 ATATTAAAAGAATATATATAATATG
1 ATATTAAAAGAATATATATAATATG
*
14199991 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
14200012 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATG
Found at i:14200421 original size:16 final size:17
Alignment explanation
Indices: 14200400--14200440 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
14200390 AAAAACTTAT
*
14200400 TCAAAAAAAAAAACTTC
1 TCAAAAAAAAAAACTCC
14200417 T-AAAAAAAAAAACTCC
1 TCAAAAAAAAAAACTCC
14200433 TCAAAAAA
1 TCAAAAAA
14200441 CCCCTACTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.68, C:0.17, G:0.00, T:0.15
Consensus pattern (17 bp):
TCAAAAAAAAAAACTCC
Found at i:14203660 original size:31 final size:31
Alignment explanation
Indices: 14203620--14203690 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
14203610 AAACTTTAAA
* *
14203620 TTTGATCACTACTATTAG-AATAATTTATTGT
1 TTTGGTCACTACTATT-GCAATAATTTATTAT
*
14203651 TTTGGTCACTACTGTTGCAATAATTTATTAT
1 TTTGGTCACTACTATTGCAATAATTTATTAT
14203682 TTTGGTCAC
1 TTTGGTCAC
14203691 CCATTTGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.48
Consensus pattern (31 bp):
TTTGGTCACTACTATTGCAATAATTTATTAT
Found at i:14207875 original size:46 final size:44
Alignment explanation
Indices: 14207789--14207949 Score: 164
Period size: 46 Copynumber: 3.5 Consensus size: 44
14207779 GCCGATGTTG
* *
14207789 TGTCCCAAACATGGTCTTACACTGAC-ACATCTCGTAGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTGACTACGTCTCG-AGCCGATGCA
14207834 TGTCCCAGACATGTCTTACACTGACTTACGTCTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAC-TACGTCTCGA-GCCGATGCA
* * * * *
14207880 TGTCCCAGACATGTCTTATATTATCACTA-GTCTCAATACCGATGCTA
1 TGTCCCAGACATGTCTTACA--CTGACTACGTCTCGA-GCCGATGC-A
14207927 TGTCCCAGACATTGTCTTACACT
1 TGTCCCAGACA-TGTCTTACACT
14207950 AGCTCTCATA
Statistics
Matches: 99, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
44 13 0.13
45 12 0.12
46 49 0.49
47 14 0.14
48 11 0.11
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTGACTACGTCTCGAGCCGATGCA
Found at i:14209679 original size:25 final size:25
Alignment explanation
Indices: 14209645--14209694 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
14209635 ATCTAGTTTC
14209645 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
14209670 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
14209695 ATAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTATAATATCTATTTATTTCTA
Found at i:14209686 original size:15 final size:15
Alignment explanation
Indices: 14209645--14209687 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
14209635 ATCTAGTTTC
14209645 TTTTTATAATATCTA
1 TTTTTATAATATCTA
14209660 --TTTAT--T-TCTA
1 TTTTTATAATATCTA
14209670 TTTTTATAATATCTA
1 TTTTTATAATATCTA
14209685 TTT
1 TTT
14209688 ATTTCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 4 0.17
11 1 0.04
12 5 0.22
13 5 0.22
14 1 0.04
15 7 0.30
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTATAATATCTA
Found at i:14209701 original size:21 final size:23
Alignment explanation
Indices: 14209649--14209702 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
14209639 AGTTTCTTTT
*
14209649 TATAATATCTATTTATTTCTATTTT
1 TATAATATCTATTTATTTCTA--TA
14209674 TATAATATCTATTTATTTCTA-A
1 TATAATATCTATTTATTTCTATA
14209696 TA-AATAT
1 TATAATAT
14209703 TTATATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
25 21 0.75
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TATAATATCTATTTATTTCTATA
Found at i:14217148 original size:27 final size:27
Alignment explanation
Indices: 14217110--14217166 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
14217100 CCCATAACAA
14217110 AACAGTCTCATATGATTAATGCATGAT
1 AACAGTCTCATATGATTAATGCATGAT
14217137 AACAGTCTCATATGATTAATGCATGAT
1 AACAGTCTCATATGATTAATGCATGAT
14217164 AAC
1 AAC
14217167 CCCATCCAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
AACAGTCTCATATGATTAATGCATGAT
Found at i:14222197 original size:20 final size:20
Alignment explanation
Indices: 14222174--14222223 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
14222164 AAAGGAAAAT
14222174 AAAAAAGAGAAAAGAA-AAGA
1 AAAAAAGAGAAAA-AATAAGA
*
14222194 AAAAAGGAGAGAAAAAATAATA
1 AAAAA--AGAGAAAAAATAAGA
14222216 AAAAAAGA
1 AAAAAAGA
14222224 ATGGAGGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 8 0.31
21 2 0.08
22 16 0.62
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (20 bp):
AAAAAAGAGAAAAAATAAGA
Found at i:14222218 original size:22 final size:19
Alignment explanation
Indices: 14222169--14222224 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
14222159 GGAACAAAGG
*
14222169 AAAATAAAAAAGAGAAAAG
1 AAAATAAAAAAGAGAAAAA
*
14222188 AAAAGAAAAAAGGAGAGAAAA
1 AAAATAAAAAA-GAGA-AAAA
14222209 AATAATAAAAAA-AGAA
1 AA-AATAAAAAAGAGAA
14222225 TGGAGGAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 11 0.35
20 7 0.23
21 5 0.16
22 8 0.26
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAATAAAAAAGAGAAAAA
Found at i:14224802 original size:38 final size:38
Alignment explanation
Indices: 14224711--14224918 Score: 263
Period size: 38 Copynumber: 5.4 Consensus size: 38
14224701 CAATCCAGTC
* * * * *
14224711 ACCAGCACAAAACCTACGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
14224751 ACCAGCACTAAGCCTGCGGGATTCAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * * *
14224789 ACCAACACGAAGCCTACAGGATTTTACCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
14224827 ACCAGCACGAAGCCTGCGGGATTTAACTCAGATATAGT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
14224865 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
14224903 ACCAGCACGAAGCCTG
1 ACCAGCACGAAGCCTG
14224919 TGGACCTTTA
Statistics
Matches: 146, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
38 124 0.85
39 4 0.03
40 18 0.12
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.19
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:14232581 original size:38 final size:38
Alignment explanation
Indices: 14232531--14232745 Score: 326
Period size: 38 Copynumber: 5.7 Consensus size: 38
14232521 TTAAGCTCAA
*
14232531 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
14232569 ATATAATACCAGCACGAAG-CTGCGAGATTTAACTCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
14232606 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
14232644 ATATAGTACCAGCTCGAAGCCAT-CGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCC-TGCGGGATTTAACCCGG
* *
14232682 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
14232720 ATATAATACCAGCACGAAGCCTGCGG
1 ATATAATACCAGCACGAAGCCTGCGG
14232746 ACCTTTAAGC
Statistics
Matches: 162, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
37 35 0.22
38 126 0.78
39 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:14232713 original size:76 final size:76
Alignment explanation
Indices: 14232498--14232744 Score: 331
Period size: 76 Copynumber: 3.2 Consensus size: 76
14232488 AAATCTAGTC
* * * *
14232498 ACCAGCACAAAACCTGC-AGGACTTTAAGCTCAAATATAATACCAGCACTAAGCCTGCGGGATTT
1 ACCAGCACGAAGCCTGCGA-GA-TTTAA-CTCAGATATAATACCAGCACGAAGCCTGCGGGATTT
14232562 AACCCGGATATAAT
63 AACCCGGATATAAT
14232576 ACCAGCACGAAG-CTGCGAGATTTAACTCAGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
1 ACCAGCACGAAGCCTGCGAGATTTAACTCAGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
*
14232640 CCGGATATAGT
66 CCGGATATAAT
* * * *
14232651 ACCAGCTCGAAGCCAT-CGGGATTTAAC-CTGGATATAGTACCAGCACGAAGCCTGCGGGATTTA
1 ACCAGCACGAAGCC-TGCGAGATTTAACTC-AGATATAATACCAGCACGAAGCCTGCGGGATTTA
*
14232714 ACCTGGATATAAT
64 ACCCGGATATAAT
14232727 ACCAGCACGAAGCCTGCG
1 ACCAGCACGAAGCCTGCG
14232745 GACCTTTAAG
Statistics
Matches: 152, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
75 60 0.39
76 74 0.49
77 7 0.05
78 11 0.07
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (76 bp):
ACCAGCACGAAGCCTGCGAGATTTAACTCAGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
CCGGATATAAT
Found at i:14238181 original size:15 final size:14
Alignment explanation
Indices: 14238138--14238183 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
14238128 TGGAGTTATC
*
14238138 AAAAAGAAAAAAAG
1 AAAAAGAAAAAAAT
*
14238152 AAAAAGAACCAAAAT
1 AAAAAGAA-AAAAAT
14238167 AAAAAGAAGAAAAAT
1 AAAAAGAA-AAAAAT
14238182 AA
1 AA
14238184 TAGGCATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.80, C:0.04, G:0.11, T:0.04
Consensus pattern (14 bp):
AAAAAGAAAAAAAT
Found at i:14246351 original size:43 final size:43
Alignment explanation
Indices: 14246303--14246384 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
14246293 GATGTGTTTT
14246303 GATGCAAGAAGGCAAAGTCATTTCTTATGCTTCAAGACAATTG
1 GATGCAAGAAGGCAAAGTCATTTCTTATGCTTCAAGACAATTG
*
14246346 GATGCAAGAAGGCAAAGTCGTTTCTTATGCTTCAAGACA
1 GATGCAAGAAGGCAAAGTCATTTCTTATGCTTCAAGACA
14246385 GTTGAAGCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (43 bp):
GATGCAAGAAGGCAAAGTCATTTCTTATGCTTCAAGACAATTG
Found at i:14248256 original size:58 final size:58
Alignment explanation
Indices: 14248194--14248337 Score: 168
Period size: 57 Copynumber: 2.5 Consensus size: 58
14248184 TTACTGACGA
* * **
14248194 GATTTAGCCTGGACTAGTAATCCTGATATAATC-CTTCTCGAGCATATGTTACAATTAG
1 GATTTAGCCTGGACTAGTAATCCTGATATAAGCTCTTCT-GAGCATATATTACAAAAAG
* * * *
14248252 GATTTAGCCTAGACTGGTAATCCTAAT-TGAGCTCTTCTGAGCATATATTACAAAAAG
1 GATTTAGCCTGGACTAGTAATCCTGATATAAGCTCTTCTGAGCATATATTACAAAAAG
* *
14248309 GATTTATCCTGGACTA-TAATCCTGTTATA
1 GATTTAGCCTGGACTAGTAATCCTGATATA
14248338 TGTTATGAGG
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
56 8 0.11
57 33 0.47
58 29 0.41
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (58 bp):
GATTTAGCCTGGACTAGTAATCCTGATATAAGCTCTTCTGAGCATATATTACAAAAAG
Found at i:14253918 original size:47 final size:47
Alignment explanation
Indices: 14253857--14254687 Score: 1599
Period size: 47 Copynumber: 17.7 Consensus size: 47
14253847 TGAAATGTGT
* * *
14253857 ATATATGAGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14253904 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14253951 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14253998 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254045 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254092 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254139 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254186 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254233 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254280 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254327 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254374 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254421 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254468 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254515 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254562 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
14254609 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * * *
14254656 ATATGTGTGATAAGGCCAAATGGCTAATGTGA
1 ATATATGTGTTAAGGCCGAATGGCCAATGTGA
14254688 AACATGTATG
Statistics
Matches: 777, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 777 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (47 bp):
ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:14257210 original size:47 final size:47
Alignment explanation
Indices: 14257159--14257305 Score: 222
Period size: 47 Copynumber: 3.1 Consensus size: 47
14257149 TTAGGATTTT
* *
14257159 ATGTGATGAATGTGAACATGCGTATGTGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
14257206 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * * * * *
14257253 ATGTGATGAATGTGAACATGTATATATGTGGTAAAGCCAAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
14257300 ATGTGA
1 ATGTGA
14257306 GATATGTATG
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Found at i:14257612 original size:37 final size:37
Alignment explanation
Indices: 14257467--14257611 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
14257457 GGAAATATAT
*
14257467 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
14257504 TCCGGGTAAGACCCGATGACTATGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
14257541 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
14257578 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
14257612 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:14259902 original size:24 final size:24
Alignment explanation
Indices: 14259852--14259905 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
14259842 AATCGAATTT
*
14259852 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
14259876 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
14259900 GCACAC
1 GCACAC
14259906 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:14267706 original size:62 final size:63
Alignment explanation
Indices: 14267609--14267733 Score: 225
Period size: 62 Copynumber: 2.0 Consensus size: 63
14267599 AGTAGTCTAC
*
14267609 ATTTTGTATACCGAGGTTAGTTGTATGTAAAAAATACAACAACATT-TTATTATATGTGTTTA
1 ATTTTGTATACCGAGGTTAATTGTATGTAAAAAATACAACAACATTGTTATTATATGTGTTTA
*
14267671 ATTTTGTATACCGAGGTTAATTTTATGTAAAAAATACAACAACATTGTTATTATATGTGTTTA
1 ATTTTGTATACCGAGGTTAATTGTATGTAAAAAATACAACAACATTGTTATTATATGTGTTTA
14267734 GTTTGATATG
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 44 0.73
63 16 0.27
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (63 bp):
ATTTTGTATACCGAGGTTAATTGTATGTAAAAAATACAACAACATTGTTATTATATGTGTTTA
Found at i:14267934 original size:47 final size:45
Alignment explanation
Indices: 14267866--14268128 Score: 186
Period size: 47 Copynumber: 5.7 Consensus size: 45
14267856 TTTGTGTGCT
* *
14267866 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCACATTATGAGACCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG--ACATTATGAGAGCC
* *
14267912 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGACATT---ATGAGAGCC
* * *
14267960 AGTGTAAGACATGTCTGAGACAT-GCATCAG-CATCGA-GATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACAT-TATGA-G--AGCC
** * *
14268006 AGTGTAAGACATGTCTGGGACAT-GCATCGGTTACAAAAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG--ACATTATGAGAGCC
* *
14268050 AGTGTAAGACCATGTCTGGGACTTGGGATC-GAC-TTGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGACATT-AT-GA-GAGCC
14268097 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGG
14268129 CACTATACCC
Statistics
Matches: 174, Mismatches: 22, Indels: 40
0.74 0.09 0.17
Matches are distributed among these distances:
43 6 0.03
44 13 0.07
45 18 0.10
46 54 0.31
47 57 0.33
48 24 0.14
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGACATTATGAGAGCC
Found at i:14268013 original size:46 final size:46
Alignment explanation
Indices: 14267866--14268033 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
14267856 TTTGTGTGCT
* * * * *
14267866 AGTGTAAGACATGTTTGGGACATGCATCGGCCA-C-ATTATGAGACCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CATCGA-GACGAGAGCC
* * *
14267912 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGACGAGAGCC
* *
14267960 AGTGTAAGACATGTCTGAGACATGCATCAGCATCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACG-AGAGCC
14268006 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
14268034 GGTTACAAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
46 53 0.50
47 29 0.28
48 22 0.21
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGAGAGCC
Found at i:14273626 original size:46 final size:46
Alignment explanation
Indices: 14273523--14273740 Score: 192
Period size: 46 Copynumber: 4.7 Consensus size: 46
14273513 AGATTTATGT
* * * * *
14273523 GCCAGTGTAAGACCATGTCTGGAACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CGAGATGAGA
* *
14273571 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-AGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAG-ATGAGA
* * **
14273617 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
* * * * * * *
14273663 GGCAGTGTCAGACATGTCTGGGACATGCGTCGGCTAGGAGAT--GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
* *
14273707 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
14273741 ACGGTTACAT
Statistics
Matches: 142, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
44 30 0.21
45 2 0.01
46 82 0.58
47 17 0.12
48 11 0.08
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGAGA
Found at i:14273687 original size:92 final size:90
Alignment explanation
Indices: 14273523--14273734 Score: 232
Period size: 92 Copynumber: 2.3 Consensus size: 90
14273513 AGATTTATGT
* *
14273523 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAGGGCTAGTGTAAGACATGT
*
14273588 CTAGGACATGCATCAGCCACAGTATGA-GA
64 CTAGGACATGCATC-GCC-CAGGA-GATGA
* * *
14273617 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA-GGC-AGTGTCAGACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACG--AGGGCTAGTGTAAGACATGT
* * * * *
14273680 CTGGGACATGCGTCGGCTAGGAGATGT
64 CTAGGACATGCATCGCCCAGGAGATGA
*
14273707 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
14273735 GTCAGCACGG
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
89 2 0.02
90 31 0.30
91 2 0.02
92 39 0.38
93 16 0.16
94 13 0.13
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGGGCTAGTGTAAGACATGTCT
AGGACATGCATCGCCCAGGAGATGA
Found at i:14273771 original size:46 final size:43
Alignment explanation
Indices: 14273619--14273777 Score: 151
Period size: 46 Copynumber: 3.5 Consensus size: 43
14273609 GTATGAGAGC
* * * *
14273619 CAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTTAGG
1 CAGTGTAAGACATGTCTGGGACATGCGTCAG-CTAGGACATG-T--G
* * *
14273665 CAGTGTCAGACATGTCTGGGACATGCGTCGGCTAGGAGATGTG
1 CAGTGTAAGACATGTCTGGGACATGCGTCAGCTAGGACATGTG
14273708 CTAGTGTAAGACATGTCTGGGACATGCGTCAGC-ACGGTTACATGTG
1 C-AGTGTAAGACATGTCTGGGACATGCGTCAGCTA-GG--ACATGTG
*
14273754 TCAGTGTAAGACCTGTCTGGGACA
1 -CAGTGTAAGACATGTCTGGGACA
14273778 CGGCATCGAC
Statistics
Matches: 100, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
43 3 0.03
44 31 0.31
45 3 0.03
46 62 0.62
47 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (43 bp):
CAGTGTAAGACATGTCTGGGACATGCGTCAGCTAGGACATGTG
Found at i:14284686 original size:47 final size:46
Alignment explanation
Indices: 14284618--14284783 Score: 176
Period size: 47 Copynumber: 3.6 Consensus size: 46
14284608 TCATTTGTGT
*
14284618 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAAAATGAGA
* * * * *
14284664 GCTAGTGTAATACCATGTCTGGGACATGGCATCGG-CATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCA-CAAAATGAGA
* * * *
14284712 GCTAGTGTGAGACATGTTTGGGACATGCATTGGCTACAAAAT--GT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAAAATGAGA
*
14284756 GTTAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
14284784 GCATCGGCAC
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
44 11 0.11
45 14 0.14
46 20 0.20
47 30 0.31
48 23 0.23
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAAAATGAGA
Found at i:14284790 original size:92 final size:93
Alignment explanation
Indices: 14284618--14284792 Score: 271
Period size: 94 Copynumber: 1.9 Consensus size: 93
14284608 TCATTTGTGT
* *
14284618 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAATATGAGAGCTAGTGTAATACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAAAAT-AGAGCTAGTGTAAGACCATGTC
14284683 TGGGACATGGCATCGGCATTAAGACGAGA
65 TGGGACATGGCATCGGCATTAAGACGAGA
* * * * *
14284712 GCTAGTGTGAGACATGTTTGGGACATGCATTGGCTACAAAAT-GTGTTAGTGTAAGACCATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAAAATAGAGCTAGTGTAAGACCATGTCT
14284776 GGGACATGGCATCGGCA
66 GGGACATGGCATCGGCA
14284793 CGGATATGTG
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
92 36 0.49
94 38 0.51
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACAAAATAGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATCGGCATTAAGACGAGA
Found at i:14287538 original size:43 final size:43
Alignment explanation
Indices: 14287490--14287592 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
14287480 TTGGTTTTCA
14287490 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
*
14287533 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
14287576 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
14287593 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.16, G:0.37, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
Found at i:14287609 original size:29 final size:29
Alignment explanation
Indices: 14287574--14287647 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
14287564 GTTGTGAGAT
* *
14287574 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
14287603 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
14287632 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14287648 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:14288081 original size:40 final size:40
Alignment explanation
Indices: 14287958--14288166 Score: 192
Period size: 40 Copynumber: 5.2 Consensus size: 40
14287948 TCGAATGATG
* * *
14287958 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAATCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
14287998 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAA-ATCCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
14288038 TCCGGGCTAAATCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATA
* *
14288078 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATA
* * * * *
14288118 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATA
*
14288158 TCTGGGCTA
1 TCCGGGCTA
14288167 GGTCCCAAAG
Statistics
Matches: 138, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
39 2 0.01
40 116 0.84
41 20 0.14
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:14296312 original size:96 final size:96
Alignment explanation
Indices: 14296195--14296375 Score: 285
Period size: 96 Copynumber: 1.9 Consensus size: 96
14296185 CCTGATTTCC
* * * *
14296195 AATATCATGGCCCAACGCCAAATCAATG-AAGCTCGCACCCGAAGTGCTAATATCATGGCTCGAA
1 AATATCATGGCCCAAAGCCAAATCAATGTAA-CTCGCACCCAAAGTGCTAATATCATCGCCCGAA
14296259 GCCAAATCAATG-AAGCTCGTACCTGAAGTGCT
65 GCCAAATCAATGTAA-CTCGTACCTGAAGTGCT
*
14296291 AATATCATGGCCCAAATCCAAATCAATGTAACTCGCACCCAAAGTGCTAATATCATCGCCCGAAG
1 AATATCATGGCCCAAAGCCAAATCAATGTAACTCGCACCCAAAGTGCTAATATCATCGCCCGAAG
14296356 CCAAATCAATGTAACTCGTA
66 CCAAATCAATGTAACTCGTA
14296376 ATGACATGTC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
96 74 0.95
97 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (96 bp):
AATATCATGGCCCAAAGCCAAATCAATGTAACTCGCACCCAAAGTGCTAATATCATCGCCCGAAG
CCAAATCAATGTAACTCGTACCTGAAGTGCT
Done.