Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 55 of 310
Found at i:16990658 original size:42 final size:42
Alignment explanation
Indices: 16990556--16990798 Score: 170
Period size: 44 Copynumber: 5.7 Consensus size: 42
16990546 AGCTCATATA
* * *
16990556 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
* *
16990599 ATGCCACTGTCCTAGACAGGGTCTTACATGAAATCAAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATACG
* ** *
16990641 ATGCCGATGTCCCAGACATAGTCTTACACGTGAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACA--TGAA-ATCAAATACG
* *** * **
16990685 ATGCCAATGTCCCAAACATTATCGTACACAAAATCAAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATACG
** * * *
16990727 ATGCCGTTGTCCCAGGCATGGTCTTACACGCAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACATG-AAA--TCAAATACG
* *
16990771 ATGCCAACGTCCTAGAC-GTGGTCTTACA
1 ATGCCAATGTCCCAGACAG-GGTCTTACA
16990799 CAAAATCATA
Statistics
Matches: 158, Mismatches: 33, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
41 6 0.04
42 50 0.32
43 37 0.23
44 53 0.34
45 12 0.08
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATACG
Found at i:16990696 original size:44 final size:43
Alignment explanation
Indices: 16990556--16990799 Score: 183
Period size: 42 Copynumber: 5.7 Consensus size: 43
16990546 AGCTCATATA
* * * * *
16990556 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATC-AAATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA-ATCG
* * * * *
16990599 ATGCCACTGTCCTAGACAGGGTCTTACATG-AA-ATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAAAT-CG
* *
16990641 ATGCCGATGTCCCAGACATAGTCTTACACGTGAATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AATCTCAAATCG
* ** * **
16990685 ATGCCAATGTCCCAAACATTATCGTACAC--AAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAAAT-CG
** * *
16990727 ATGCCGTTGTCCCAGGCATGGTCTTACACGCAAATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-TAATCTCAAATCG
* * *
16990771 ATGCCAACGTCCTAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
16990800 AAAATCATAT
Statistics
Matches: 155, Mismatches: 37, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
41 10 0.06
42 53 0.34
43 25 0.16
44 53 0.34
45 14 0.09
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAAATCG
Found at i:16990799 original size:86 final size:86
Alignment explanation
Indices: 16990598--16990806 Score: 260
Period size: 86 Copynumber: 2.4 Consensus size: 86
16990588 ATCAAATATT
**
16990598 GATGCC-ACTGTCCTAGACAG-GGTCTTACATGAAATCAAATACGATGCCGATGTCCCAGACATA
1 GATGCCAAC-GTCCTAGAC-GTGGTCTTACACAAAATCAAATACGATGCCGATGTCCCAGACATA
**
16990661 GTCTTACACGTGAATCTCAAATC
64 GTCTTACACGCAAATCTCAAATC
* * * * ** * * * *
16990684 GATGCCAATGTCCCAAACATTATCGTACACAAAATCAAATACGATGCCGTTGTCCCAGGCATGGT
1 GATGCCAACGTCCTAGACGTGGTCTTACACAAAATCAAATACGATGCCGATGTCCCAGACATAGT
16990749 CTTACACGCAAATCTCAAATC
66 CTTACACGCAAATCTCAAATC
16990770 GATGCCAACGTCCTAGACGTGGTCTTACACAAAATCA
1 GATGCCAACGTCCTAGACGTGGTCTTACACAAAATCA
16990807 TATATCGAAA
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
86 99 0.99
87 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (86 bp):
GATGCCAACGTCCTAGACGTGGTCTTACACAAAATCAAATACGATGCCGATGTCCCAGACATAGT
CTTACACGCAAATCTCAAATC
Found at i:16993184 original size:42 final size:42
Alignment explanation
Indices: 16993072--16993227 Score: 125
Period size: 42 Copynumber: 3.7 Consensus size: 42
16993062 TACCACACTA
* * *** *
16993072 ATGCCAAATCCCAGATATGGTCTTACATGTAATCTCATACTG
1 ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATAATG
* * * ** * * * *
16993114 CTGCCAATAGCCTAGCTATAGTGTTACACGAAATGTCAT-ATCG
1 ATGCC-ATATCCCAAATATGGTCTTACACAAAATCTCATAAT-G
*
16993157 ATGTCATATCCCAAATATGGTCTTACACAAAATCTCATAATG
1 ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATAATG
* *
16993199 ATGCCATATCCTAGATATGGTCTTACACA
1 ATGCCATATCCCAAATATGGTCTTACACA
16993228 TAGCCTCGGT
Statistics
Matches: 87, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
42 57 0.66
43 30 0.34
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATAATG
Found at i:16999786 original size:42 final size:42
Alignment explanation
Indices: 16999721--16999818 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
16999711 ATAGCCCAAC
* * * *
16999721 TATGGTCTTACATAAAATGTCAT-ATCGATGCCATATCCTAGA
1 TATGGTCTTACACAAAATCTCATAAT-AATGCCATATCCCAGA
*
16999763 TATGGTCTTACACAATATCTCATAATAATGCCATATCCCAGA
1 TATGGTCTTACACAAAATCTCATAATAATGCCATATCCCAGA
16999805 TATGGTCTTACACA
1 TATGGTCTTACACA
16999819 TAGCCTCGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
42 48 0.96
43 2 0.04
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCATAATAATGCCATATCCCAGA
Found at i:17000763 original size:13 final size:13
Alignment explanation
Indices: 17000745--17000771 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17000735 CGACTTAGTA
17000745 AAATGGTCTAATT
1 AAATGGTCTAATT
17000758 AAATGGTCTAATT
1 AAATGGTCTAATT
17000771 A
1 A
17000772 CCATCTAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (13 bp):
AAATGGTCTAATT
Found at i:17003679 original size:22 final size:22
Alignment explanation
Indices: 17003654--17003696 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
17003644 TCTTCCTATT
17003654 TTGCTACTATTTTATTATTATG
1 TTGCTACTATTTTATTATTATG
*
17003676 TTGCTACTATTTTGTTATTAT
1 TTGCTACTATTTTATTATTAT
17003697 TGTTTGGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.60
Consensus pattern (22 bp):
TTGCTACTATTTTATTATTATG
Found at i:17004075 original size:29 final size:30
Alignment explanation
Indices: 17004033--17004094 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
17004023 ACTTAACAAG
17004033 CAAATGCCTTT-AAACAATAACAAAATTAA
1 CAAATGCCTTTAAAACAATAACAAAATTAA
*
17004062 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAACAATAACAAAATTAA
17004092 CAA
1 CAA
17004095 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 11 0.35
30 20 0.65
ACGTcount: A:0.56, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTTTAAAACAATAACAAAATTAA
Found at i:17004585 original size:11 final size:11
Alignment explanation
Indices: 17004569--17004599 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
17004559 TATATATATT
17004569 TAAAAATTATA
1 TAAAAATTATA
*
17004580 TAAAAATAATA
1 TAAAAATTATA
17004591 TAAAAATTA
1 TAAAAATTA
17004600 ATACGGGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:17004628 original size:30 final size:32
Alignment explanation
Indices: 17004594--17004663 Score: 81
Period size: 35 Copynumber: 2.2 Consensus size: 32
17004584 AATAATATAA
17004594 AAATTA-A-TACGGGCAGGTTTGGTTGGGCCC
1 AAATTACATTACGGGCAGGTTTGGTTGGGCCC
**
17004624 AAATTTTAGCATTTTGGGCAGGTTTGGTTGGGCCC
1 AAA--TTA-CATTACGGGCAGGTTTGGTTGGGCCC
17004659 AAATT
1 AAATT
17004664 TTAGCATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
30 3 0.09
32 3 0.09
33 2 0.06
34 1 0.03
35 24 0.73
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (32 bp):
AAATTACATTACGGGCAGGTTTGGTTGGGCCC
Found at i:17004650 original size:35 final size:35
Alignment explanation
Indices: 17004604--17004673 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
17004594 AAATTAATAC
17004604 GGGCAGGTTTGGTTGGGCCCAAATTTTAGCATTTT
1 GGGCAGGTTTGGTTGGGCCCAAATTTTAGCATTTT
17004639 GGGCAGGTTTGGTTGGGCCCAAATTTTAGCATTTT
1 GGGCAGGTTTGGTTGGGCCCAAATTTTAGCATTTT
17004674 TGTCCAAGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.14, G:0.31, T:0.37
Consensus pattern (35 bp):
GGGCAGGTTTGGTTGGGCCCAAATTTTAGCATTTT
Found at i:17009212 original size:19 final size:20
Alignment explanation
Indices: 17009175--17009212 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
17009165 AAAAAAAATA
*
17009175 AAAAAGTATTGGTACATTTC
1 AAAAAGTATCGGTACATTTC
17009195 AAAAAGTATCGGTA-ATTT
1 AAAAAGTATCGGTACATTT
17009213 TGTCTCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (20 bp):
AAAAAGTATCGGTACATTTC
Found at i:17016948 original size:46 final size:44
Alignment explanation
Indices: 17016881--17017045 Score: 129
Period size: 46 Copynumber: 3.5 Consensus size: 44
17016871 GCTAGTATAG
*
17016881 GACATGTCTGGAACATACATCGGCCACATTATGAGAGCCAGTGTAA
1 GACATGTCTGG-ACATGCATCGGCC-CATTATGAGAGCCAGTGTAA
*
17016927 GACATGTCTGAGACATGCATCGG--CATTGAGACGAGAGCCAGTGTAA
1 GACATGTCTG-GACATGCATCGGCCCATT---ATGAGAGCCAGTGTAA
* * * *
17016973 GACATGTGTGGGACATGCATTGGCCTCGAGATATGCA-AGCTAGTGTAA
1 GACATGTCT-GGACATGCATCGGCC-C-A-TTATG-AGAGCCAGTGTAA
*
17017021 GACCTGTCTTGGACATGGCATCGGC
1 GACATGTC-TGGACAT-GCATCGGC
17017046 TTGACATGTG
Statistics
Matches: 96, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
43 4 0.04
46 54 0.56
47 2 0.02
48 24 0.25
49 10 0.10
50 1 0.01
51 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (44 bp):
GACATGTCTGGACATGCATCGGCCCATTATGAGAGCCAGTGTAA
Found at i:17017122 original size:49 final size:47
Alignment explanation
Indices: 17017063--17017232 Score: 128
Period size: 49 Copynumber: 3.5 Consensus size: 47
17017053 GTGTTAGTTC
*
17017063 AAGACCTGTCTGGAACATGGCATCAACACCGATAGATGAGAGCCAATGT
1 AAGACTTGTCTGGAACATGGCATCAAC-CCGATA-ATGAGAGCCAATGT
* * ** * * **
17017112 AAGACTTGTCTGGGACGTGGCATCGGCCCTAATATATGAAAGAAAATGT
1 AAGACTTGTCTGGAACATGGCATCAACCC-GATA-ATGAGAGCCAATGT
** * *
17017161 AAGACTTGTCTGCG-ACATGGCATCAACTTAGAT-ATGTGAGCCAGTGT
1 AAGACTTGTCTG-GAACATGGCATCAAC-CCGATAATGAGAGCCAATGT
* *
17017208 AAGACCATGTTTGGAACATGGCATC
1 AAGA-CTTGTCTGGAACATGGCATC
17017233 GACATCGTAC
Statistics
Matches: 93, Mismatches: 23, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
47 14 0.15
48 18 0.19
49 60 0.65
50 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (47 bp):
AAGACTTGTCTGGAACATGGCATCAACCCGATAATGAGAGCCAATGT
Found at i:17018484 original size:569 final size:560
Alignment explanation
Indices: 17017354--17018488 Score: 1562
Period size: 569 Copynumber: 2.0 Consensus size: 560
17017344 GTGGTATAGG
* *
17017354 TACTTGCATGAAATTGACGAGATGTGAATTCAATTCATGTTGTATGATTAATAAGGAATGAATAT
1 TACTTACATGAAATTGACGAGATGTGAATTCAATTCATGTTGTATGATTAATAAGGAATAAATAT
*
17017419 GAGTAAGTATATGAGAATGTTGAGTAACACAGGTATGGATGCCAAACTCATGAGAAATGATTTTG
66 GAATAAGTATATGAGAATGTTGAGTAACACAGGTATGGATGCCAAACTCATGAGAAATGATTTTG
17017484 GTTTATGATGCACATTTGGTGACGATGTAAATAGGTAAGCCATACCTATGAGAATGATTTTGTGA
131 GTTTATGATGCACATTTGGTGACGATGTAAATAGGTAAGCCATACCTATGAGAATGATTTTGTGA
* ** * ** *
17017549 TATGATGTATAAACATGTATTTTTACCAATGTGGTGAAAATGAATTAATATGTGTGCTAAACTTA
196 TATGATGTATAAACATATATTTAAACCAATGTGGTGAAAATGAATTAAAACATGTGATAAA--TA
**
17017614 GTATCATTAATTTACACTAAAACAGTTTTGGACAGCAACAGTAGTCCGAATTTGAAAATCCACCA
259 GTATCATTAATTTACACTAAAACAGTTTTGGACAGCAACAACAGTCCGAATTTGAAAATCCACCA
*
17017679 AAAATAGTGGAAATTGAGTTAGAGGCTGAATAAAATATGAAATTAAAGCTTAATGAGTCTAGTTT
324 AAAATAGTAGAAATTGAGTTAGAGGCTGAAT--AATATGAAATTAAAGCTTAATGAGTCTAGTTT
* *
17017744 CACATAGAAGAAACGGTGTAAGCAAAGGAGTTTCATACTATGAAATATTTAAATTGATATAAGAC
387 CACATAGAAGAAACAGTGTAAGCAAAGGAGTTTCATACCATGAAATATTTAAATTGATATAAGAC
** *
17017809 AGGGTCAGAATGATTTCGAAATCCCCTGTTCTGATTTGAGAAAATCATTGAAACTTGAACAAAAA
452 AGGGTCAGAATGATTTCGAAATCCCCTACTCTGATTTGAGAAAATCATTGAAAATTGAACAAAAA
* * *
17017874 TATTTATAGGTTATAATTTATATTATTATAATTACTAATGAGTC
517 TAGTTATAGGTTATAATTTATATTACTAGAATTACTAATGAGTC
** * *
17017918 TACTTACATGAAATTGGTGATATGTGAATTCAATTCATGTTGTATGATTAATAAGGTATAAATAT
1 TACTTACATGAAATTGACGAGATGTGAATTCAATTCATGTTGTATGATTAATAAGGAATAAATAT
* * * *
17017983 GAATAATTATCTGAGCATGTTGAGTAACACAGGTATGTATGCCAAACTCATGAGAAATGATTTTG
66 GAATAAGTATATGAGAATGTTGAGTAACACAGGTATGGATGCCAAACTCATGAGAAATGATTTTG
* * * * *
17018048 GTTTATGCTGCACATTTGGTGAGGATGTTAATAGGTAAGTCATGCCTATGAGAATGATTCTGTGA
131 GTTTATGATGCACATTTGGTGACGATGTAAATAGGTAAGCCATACCTATGAGAATGATT-T-TG-
*
17018113 TGACCTTATGAT-TATAGATC-TATACTTCTGAAAACCAATGTGGTGAAAATGAATTAAAAAACA
193 TGA---TATGATGTATA-AACATATA-TT-T--AAACCAATGTGGTGAAAATGAATT--AAAACA
* * * *
17018176 TGTGATAAA-AGTATCATTAATTTACACTAAAACAGTTTTGGACAGTAGCAACAGTCTGACTTTG
248 TGTGATAAATAGTATCATTAATTTACACTAAAACAGTTTTGGACAGCAACAACAGTCCGAATTTG
** * * *
17018240 AAAATCTGCCAAAAAT-TTCAGAAATTGATTTAGAGGCTGAAT-ATATGAAATTAAATCTTAATG
313 AAAATCCACCAAAAATAGT-AGAAATTGAGTTAGAGGCTGAATAATATGAAATTAAAGCTTAATG
** *
17018303 AGTCTAGTTTCGTATAGAAGAAACAGTGTAAGCAAAGGAGTTTTATACCATGAAATATTTAAATT
377 AGTCTAGTTTCACATAGAAGAAACAGTGTAAGCAAAGGAGTTTCATACCATGAAATATTTAAATT
* * *
17018368 GTTATGAGACAGGGTCAGAATGATTTTGAAATCCCCTACTCTGATTTGAGAAAATCATTGAAAAT
442 GATATAAGACAGGGTCAGAATGATTTCGAAATCCCCTACTCTGATTTGAGAAAATCATTGAAAAT
* * * * *
17018433 TGTAA-AAAAATAGTTATGGGTTATAGTTTATTTTCCTAGAATTATTAATGAGTC
507 TG-AACAAAAATAGTTATAGGTTATAATTTATATTACTAGAATTACTAATGAGTC
17018487 TA
1 TA
17018489 TTTTCAATAG
Statistics
Matches: 501, Mismatches: 55, Indels: 25
0.86 0.09 0.04
Matches are distributed among these distances:
564 173 0.35
565 1 0.00
566 2 0.00
567 3 0.01
569 191 0.38
570 12 0.02
571 2 0.00
572 84 0.17
573 22 0.04
575 11 0.02
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (560 bp):
TACTTACATGAAATTGACGAGATGTGAATTCAATTCATGTTGTATGATTAATAAGGAATAAATAT
GAATAAGTATATGAGAATGTTGAGTAACACAGGTATGGATGCCAAACTCATGAGAAATGATTTTG
GTTTATGATGCACATTTGGTGACGATGTAAATAGGTAAGCCATACCTATGAGAATGATTTTGTGA
TATGATGTATAAACATATATTTAAACCAATGTGGTGAAAATGAATTAAAACATGTGATAAATAGT
ATCATTAATTTACACTAAAACAGTTTTGGACAGCAACAACAGTCCGAATTTGAAAATCCACCAAA
AATAGTAGAAATTGAGTTAGAGGCTGAATAATATGAAATTAAAGCTTAATGAGTCTAGTTTCACA
TAGAAGAAACAGTGTAAGCAAAGGAGTTTCATACCATGAAATATTTAAATTGATATAAGACAGGG
TCAGAATGATTTCGAAATCCCCTACTCTGATTTGAGAAAATCATTGAAAATTGAACAAAAATAGT
TATAGGTTATAATTTATATTACTAGAATTACTAATGAGTC
Found at i:17022968 original size:28 final size:28
Alignment explanation
Indices: 17022902--17023029 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
17022892 CATGAGATTG
* * **
17022902 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
17022931 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
17022959 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
17022988 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
17023016 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
17023030 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:17022991 original size:57 final size:57
Alignment explanation
Indices: 17022902--17023029 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
17022892 CATGAGATTG
*
17022902 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
17022959 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
17023016 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
17023030 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:17027286 original size:72 final size:72
Alignment explanation
Indices: 17027165--17027305 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 72
17027155 AATTATGTAT
* *
17027165 TCGAAGCTCGATGAGTCTATTTTCATATAGAAGTAACGAAAAGATCATATG-GACAGTATGTTAA
1 TCGAAGCTCGATGAGTCTATTTTCATATAGAAGAAACGAAAAGACCATATGAG-CAGTATGTTAA
17027229 GAGATTAA
65 GAGATTAA
* * * *
17027237 TCGAAGCTCGATGAGTCTATTTTCATATGGAAGAAACGAAATGACCATATGAGCTGTATGTTAGG
1 TCGAAGCTCGATGAGTCTATTTTCATATAGAAGAAACGAAAAGACCATATGAGCAGTATGTTAAG
17027302 AGAT
66 AGAT
17027306 AATTAAACTC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
72 61 0.98
73 1 0.02
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (72 bp):
TCGAAGCTCGATGAGTCTATTTTCATATAGAAGAAACGAAAAGACCATATGAGCAGTATGTTAAG
AGATTAA
Found at i:17031391 original size:43 final size:42
Alignment explanation
Indices: 17031344--17031458 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
17031334 TGTGTCCTCT
17031344 TGTAAGACTATGTCTGGGACGTTGGCATCGATATGTGATTACG
1 TGTAAGACTATGTCTGGGACGTTGGCATCGATATGTGATT-CG
* * *
17031387 TGTAAGA-TCATGTCTGGGACATCGGCATCG-TATTTGATTCG
1 TGTAAGACT-ATGTCTGGGACGTTGGCATCGATATGTGATTCG
* *
17031428 TGTAAGACCT-TGTCTAGGAAG-TGGCATCGAT
1 TGTAAGA-CTATGTCTGGGACGTTGGCATCGAT
17031459 TTATCGATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
40 7 0.11
41 18 0.30
42 9 0.15
43 27 0.44
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (42 bp):
TGTAAGACTATGTCTGGGACGTTGGCATCGATATGTGATTCG
Found at i:17038918 original size:43 final size:42
Alignment explanation
Indices: 17038870--17038960 Score: 164
Period size: 43 Copynumber: 2.1 Consensus size: 42
17038860 ATTAATATGT
*
17038870 ATTGTATTGGAATTTTTGATGAATTTGAGTAATTAGGGCTAA
1 ATTGTATTGAAATTTTTGATGAATTTGAGTAATTAGGGCTAA
17038912 AGTTGTATTGAAATTTTTGATGAATTTGAGTAATTAGGGCTAA
1 A-TTGTATTGAAATTTTTGATGAATTTGAGTAATTAGGGCTAA
17038955 ATTGTA
1 ATTGTA
17038961 AAAATTATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (42 bp):
ATTGTATTGAAATTTTTGATGAATTTGAGTAATTAGGGCTAA
Found at i:17039550 original size:43 final size:42
Alignment explanation
Indices: 17039514--17039677 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 42
17039504 ATGTGTTCTT
*
17039514 GTGTAAGACCACGTCTAGGACATTGGCATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATT-C
* * * *
17039557 GTGTAACACCATGTCTGGGACATCGGCATCG-TATTTGATTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTC
*
17039598 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATTTCTCGATATGTGATTGC
1 GTGTAAGACCAC-GTCTGGGACATTGG---C-A----TCGATATGTGATT-C
*
17039649 GTGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
17039678 TATAAGATAT
Statistics
Matches: 97, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
41 22 0.23
42 8 0.08
43 28 0.29
44 1 0.01
45 1 0.01
47 1 0.01
48 1 0.01
49 3 0.03
50 8 0.08
51 23 0.24
52 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTC
Found at i:17039613 original size:41 final size:41
Alignment explanation
Indices: 17039514--17039632 Score: 136
Period size: 41 Copynumber: 2.9 Consensus size: 41
17039504 ATGTGTTCTT
* *
17039514 GTGTAAGACCAC-GTCTAGGACATTGGCATCGATATGTGATTAC
1 GTGTAAGACC-CTGTCTGGGACA-TGGCATCG-TATTTGATTAC
* *
17039557 GTGTAACACCATGTCTGGGACATCGGCATCGTATTTGATT-C
1 GTGTAAGACCCTGTCTGGGACAT-GGCATCGTATTTGATTAC
17039598 GTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATTT
1 GTGTAAGACCCTGTCTGGGACA-TGGCATCGTATTT
17039633 CTCGATATGT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
40 4 0.06
41 28 0.42
42 10 0.15
43 25 0.37
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCCTGTCTGGGACATGGCATCGTATTTGATTAC
Found at i:17044367 original size:18 final size:19
Alignment explanation
Indices: 17044327--17044367 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
17044317 TCTCACGTCA
*
17044327 AAAAATAATTCAAAATTAT
1 AAAAATAATTCAAAATTAG
*
17044346 AAAAATATTTCAAAATT-G
1 AAAAATAATTCAAAATTAG
17044364 AAAA
1 AAAA
17044368 CTACATAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATAATTCAAAATTAG
Found at i:17046809 original size:17 final size:17
Alignment explanation
Indices: 17046776--17046809 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
17046766 TATATAAAAA
*
17046776 CAAAAGAAATTATTTTT
1 CAAAAAAAATTATTTTT
17046793 CAAAAAAAAGTTATTTT
1 CAAAAAAAA-TTATTTT
17046810 GGAAAATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (17 bp):
CAAAAAAAATTATTTTT
Found at i:17049092 original size:26 final size:25
Alignment explanation
Indices: 17049063--17049170 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 25
17049053 TGGTACAAAT
17049063 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATG-GTTAGGTAAATGTTCCA
* *
17049089 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGG-TTAGGTAAATGTTCCA
17049115 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATG-GTTAGGTAAATGTTCCA
*
17049141 TGATATTGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
17049167 TGAT
1 TGAT
17049171 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
25 1 0.01
26 71 0.96
27 2 0.03
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:17049119 original size:52 final size:52
Alignment explanation
Indices: 17049063--17049170 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
17049053 TGGTACAAAT
*
17049063 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
1 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * * *
17049115 TGATAATGTGTTAGGTAAATGTTCCATGATATTGGGTTAGGTAAATGTTCCA
1 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
17049167 TGAT
1 TGAT
17049171 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (52 bp):
TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:17056153 original size:26 final size:26
Alignment explanation
Indices: 17056124--17056231 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
17056114 TGGTAAAAAT
17056124 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
17056150 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17056176 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17056202 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17056228 TGAT
1 TGAT
17056232 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:17062253 original size:15 final size:15
Alignment explanation
Indices: 17062235--17062267 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
17062225 TTATTTTTCA
17062235 TTTATTTACTT-TTAT
1 TTTATTT-CTTATTAT
17062250 TTTATTTCTTATTAT
1 TTTATTTCTTATTAT
17062265 TTT
1 TTT
17062268 TATTATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTATTTCTTATTAT
Found at i:17068220 original size:22 final size:21
Alignment explanation
Indices: 17068190--17068230 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
17068180 GTGACAGCCA
*
17068190 CTTTGATTTGGGTTTAATCTTT
1 CTTTGATTT-GATTTAATCTTT
*
17068212 CTTTTATTTGATTTAATCT
1 CTTTGATTTGATTTAATCT
17068231 GAAAATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.61
Consensus pattern (21 bp):
CTTTGATTTGATTTAATCTTT
Found at i:17069900 original size:20 final size:20
Alignment explanation
Indices: 17069872--17069910 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
17069862 AAACATATAT
* *
17069872 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
17069892 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
17069911 CAACCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:17072698 original size:42 final size:42
Alignment explanation
Indices: 17072639--17072725 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
17072629 CAATGCCGGA
** * *
17072639 ATAGGGTTAAGGAGCATTACTGGACTTACAACATAATTATAC
1 ATAGGGTTAAGGAGCATTACCAGACATACAACACAATTATAC
17072681 ATAGGGTTAAGGAGCATTACCAGACATACAACACAATTATAC
1 ATAGGGTTAAGGAGCATTACCAGACATACAACACAATTATAC
17072723 ATA
1 ATA
17072726 CTTTTAGCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.25
Consensus pattern (42 bp):
ATAGGGTTAAGGAGCATTACCAGACATACAACACAATTATAC
Found at i:17074038 original size:27 final size:27
Alignment explanation
Indices: 17074003--17074114 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
17073993 AGCATGGCTG
* *
17074003 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
17074029 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
17074057 CCAGA-ACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
17074084 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
17074111 CCAG
1 CCAG
17074115 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.07
27 53 0.72
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:17074094 original size:54 final size:54
Alignment explanation
Indices: 17074003--17074114 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
17073993 AGCATGGCTG
* * *
17074003 CCAGAACAGATAATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
17074057 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
17074111 CCAG
1 CCAG
17074115 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:17077125 original size:29 final size:28
Alignment explanation
Indices: 17077057--17077196 Score: 117
Period size: 29 Copynumber: 4.9 Consensus size: 28
17077047 TACATACATG
*
17077057 CATATGGCCC-TCTAGGCCTAATCTCA-TT
1 CATATGGCCCATC-AGGCCCAAT-TCACTT
* * * *
17077085 TAGATGCCCCATCCGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
17077114 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
* *
17077143 CATATGACCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAAT-TCACTT
* *
17077171 TATATGGCCCATCTA-GCCCAAATCAC
1 CATATGGCCCATC-AGGCCCAATTCAC
17077197 ATTATATTCA
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
27 6 0.07
28 32 0.36
29 49 0.54
30 3 0.03
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCACTT
Found at i:17077453 original size:16 final size:16
Alignment explanation
Indices: 17077415--17077453 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
17077405 GTGGCCAAAC
*
17077415 TTTCGGATTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
17077431 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
17077447 TTTCGGC
1 TTTCGGC
17077454 CTTTGCCGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.21, G:0.26, T:0.46
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:17087861 original size:14 final size:13
Alignment explanation
Indices: 17087844--17087883 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
17087834 AAAGTAGTTT
17087844 TAAAAAGATAAAAA
1 TAAAAA-ATAAAAA
17087858 TAAAAACATAAAAA
1 TAAAAA-ATAAAAA
*
17087872 TAATAAATAAAA
1 TAAAAAATAAAA
17087884 TTATTTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:17100417 original size:43 final size:43
Alignment explanation
Indices: 17100369--17100483 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
17100359 TACCGAGATG
* *
17100369 TGATTACATGTAAGACCATGTCTGGGACATTGACATTG-TATTA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGACATCGTTA-TA
* *
17100412 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGACATCGTTATA
* *
17100455 TGATTTCGTGTAAGACCCTGTCTGGGACA
1 TGATTACGTGTAAGACCATGTCTGGGACA
17100484 GTGGTTTCGA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGACATCGTTATA
Found at i:17102639 original size:27 final size:28
Alignment explanation
Indices: 17102555--17102652 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
17102545 CATGAGATTG
* * * *
17102555 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
17102584 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
17102612 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
17102639 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
17102653 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:17102663 original size:27 final size:27
Alignment explanation
Indices: 17102583--17102665 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
17102573 TAAATTGTAC
* *
17102583 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
17102611 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
17102638 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
17102665 A
1 A
17102666 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:17102666 original size:29 final size:27
Alignment explanation
Indices: 17102555--17102666 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
17102545 CATGAGATTG
** * *
17102555 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
17102584 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
17102612 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
17102639 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
17102667 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:17121345 original size:23 final size:23
Alignment explanation
Indices: 17121319--17121365 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
17121309 AACCCTTAGT
17121319 AAACCCCGTTGAGCTAACAATTC
1 AAACCCCGTTGAGCTAACAATTC
17121342 AAACCCCGTTGAGCTAACAATTC
1 AAACCCCGTTGAGCTAACAATTC
17121365 A
1 A
17121366 TTTCTTGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.21
Consensus pattern (23 bp):
AAACCCCGTTGAGCTAACAATTC
Found at i:17126841 original size:34 final size:33
Alignment explanation
Indices: 17126763--17126841 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 33
17126753 AGTGAATAAC
* *
17126763 ACAGT-GTCAGTACATTCTGGGCCAAAGCCCTAT
1 ACAGTAGT-AGTACAATCTGGGCCAAAGCCCTAA
* * **
17126796 TCAGTAATAGTACAATCTGGGCCTTAGCCCTTAA
1 ACAGTAGTAGTACAATCTGGGCCAAAGCCC-TAA
17126830 ACAGTAGTAGTA
1 ACAGTAGTAGTA
17126842 TGGGCCTAAG
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
33 23 0.64
34 13 0.36
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (33 bp):
ACAGTAGTAGTACAATCTGGGCCAAAGCCCTAA
Found at i:17126946 original size:30 final size:30
Alignment explanation
Indices: 17126869--17126951 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
17126859 TCAGTCTCGA
17126869 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACT-GGCCGAAGCCTTTTCATAAAT
17126899 CATATCACTGCGCCGAAGCCTTTTCATAAAT
1 CATATCACTG-GCCGAAGCCTTTTCATAAAT
17126930 CATATCACTGGCCGAAGCCTTT
1 CATATCACTGGCCGAAGCCTTT
17126952 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (30 bp):
CATATCACTGGCCGAAGCCTTTTCATAAAT
Found at i:17127185 original size:24 final size:24
Alignment explanation
Indices: 17127158--17127241 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
17127148 TTGGAGGCCT
17127158 AGCCTCTTTTAAT-AACTAGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
* *
17127182 AGCCCTATTTGATAAACTGGGGCAA
1 AGCCCT-TTTAATAAACTAGGGCAA
** *
17127207 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-AATAAACTAGGGCAA
17127232 AGCCCTTTTA
1 AGCCCTTTTA
17127242 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.04
24 12 0.24
25 37 0.73
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:17127204 original size:25 final size:25
Alignment explanation
Indices: 17127171--17127240 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
17127161 CTCTTTTAAT
17127171 AACTAGGGCAAAGCCCTATTT-GATA
1 AACTAGGGCAAAGCCCT-TTTCGATA
* *
17127196 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
17127221 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
17127241 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 3 0.08
25 37 0.93
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:17128198 original size:27 final size:27
Alignment explanation
Indices: 17128168--17128253 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
17128158 GTAAATCTAC
17128168 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
17128195 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * *
17128221 AGAAAGTCAATGGTATTTCTATAATTTTTT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
17128251 AAA
1 AAA
17128254 TTAGGGGTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.42
28 7 0.13
29 21 0.40
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:17128272 original size:27 final size:27
Alignment explanation
Indices: 17128255--17128387 Score: 144
Period size: 27 Copynumber: 4.9 Consensus size: 27
17128245 TTTTTTAAAT
17128255 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
17128281 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
* *
17128309 CAGTGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
* **
17128336 TAGGGGTATTTTGGTAATTCTACCCTA-
1 TAGGGGTATTTTGGTAATTTTA-CAAAC
* *
17128363 TAGGGGTATTTTAGTAATTTCACAA
1 TAGGGGTATTTTGGTAATTTTACAA
17128388 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
26 3 0.03
27 80 0.93
28 3 0.03
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:17128416 original size:27 final size:27
Alignment explanation
Indices: 17128386--17128477 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
17128376 GTAATTTCAC
* *
17128386 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
17128413 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * *
17128440 AATCGAGGGTAAAATAGTGAGTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
17128467 AATCGAGGGTA
1 AATCGAGGGTA
17128478 CTTTGGCAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:17130599 original size:30 final size:31
Alignment explanation
Indices: 17130523--17130605 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
17130513 TCAGTCTCGA
17130523 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
17130553 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
17130584 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
17130606 ACTGTAAGCG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.35
31 34 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:17130853 original size:25 final size:25
Alignment explanation
Indices: 17130825--17130894 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
17130815 CTCTTTTAAT
*
17130825 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
17130850 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
17130875 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
17130895 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:17131852 original size:27 final size:27
Alignment explanation
Indices: 17131822--17131907 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
17131812 GTAAATCTAC
17131822 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
17131849 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
17131875 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
17131905 AAA
1 AAA
17131908 TTAGAGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:17131925 original size:27 final size:27
Alignment explanation
Indices: 17131886--17132008 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
17131876 GAAAGTCAAG
** *
17131886 GGTATTTCT-GTAATTTTGTAAATTAGA
1 GGTATTT-TGGTAATTTTACAAACTAGA
*
17131913 GGTATTTTGGTAATTTTACAAA-TTGAA
1 GGTATTTTGGTAATTTTACAAACTAG-A
* * * *
17131940 GGTATTTCGATAATTTCACAAACTAGT
1 GGTATTTTGGTAATTTTACAAACTAGA
*
17131967 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGA
17131994 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
17132009 CTACCCTATA
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.04
27 76 0.94
28 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGA
Found at i:17131927 original size:56 final size:55
Alignment explanation
Indices: 17131826--17131988 Score: 156
Period size: 54 Copynumber: 3.0 Consensus size: 55
17131816 ATCTACAAAC
* * *
17131826 CAAGGGTATTTCAGTAATTTTGTAAACCA-ATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTTC-GTAATTTTGTAAACTAGA-GGTATTT-TGGTAATTTTTACAAAGT
* *
17131882 CAAGGGTATTTCTGTAATTTTGTAAATTAGAGGTATTTTGGTAA-TTTTACAAATT
1 CAAGGGTATTTC-GTAATTTTGTAAACTAGAGGTATTTTGGTAATTTTTACAAAGT
* *** *
17131937 GAA-GGTATTTCGATAATTTCACAAACTAGTGGTATTTTGGTAA-TTTTACAAA
1 CAAGGGTATTTCG-TAATTTTGTAAACTAGAGGTATTTTGGTAATTTTTACAAA
17131989 CTAGGGGTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.01
54 42 0.46
55 12 0.13
56 36 0.39
57 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (55 bp):
CAAGGGTATTTCGTAATTTTGTAAACTAGAGGTATTTTGGTAATTTTTACAAAGT
Found at i:17132020 original size:27 final size:27
Alignment explanation
Indices: 17131913--17132035 Score: 108
Period size: 27 Copynumber: 4.6 Consensus size: 27
17131903 GTAAATTAGA
* * *
17131913 GGTATTTTGGTAATTTTACAAA-TTGAA
1 GGTATTTTGGTAATTCTACAAACTAG-G
* * *
17131940 GGTATTTCGATAATT-TCACAAACTAGT
1 GGTATTTTGGTAATTCT-ACAAACTAGG
*
17131967 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTCTACAAACTAGG
**
17131994 GGTATTTTGGTAATTCTACCCTA-TAGG
1 GGTATTTTGGTAATTCTA-CAAACTAGG
*
17132021 GGTATTTTAGTAATT
1 GGTATTTTGGTAATT
17132036 TCACAATTGA
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 75 0.93
28 5 0.06
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTCTACAAACTAGG
Found at i:17132086 original size:27 final size:27
Alignment explanation
Indices: 17132047--17132185 Score: 188
Period size: 27 Copynumber: 5.1 Consensus size: 27
17132037 CACAATTGAA
** *
17132047 GGTAAAATGGTAATTCTGTAAATCAAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
*
17132074 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
* *
17132101 GGTAAAACGGTAATTTTGTAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
*
17132128 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
* * *
17132155 GGTAAAACAGTGAGTCTATAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
17132182 GGTA
1 GGTA
17132186 CTTTGGCAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GGTAAAACAGTAATTCTGTAAATCGAG
Found at i:17132223 original size:81 final size:81
Alignment explanation
Indices: 17132056--17132212 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
17132046 AGGTAAAATG
* * **
17132056 GTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTA
1 GTAATTCTGTAAATCAAGGGTAAAACAGTAAGTCTATAAATCGAGGGTAAAACGGCAATTTTACA
* *
17132121 AATCGAGGGTAAAACA
66 AATCAAGGGCAAAACA
* ****
17132137 GTAATTCTGTAAATCAAGGGTAAAACAGTGAGTCTATAAATCGAGGGTACTTTGGCAATTTTACA
1 GTAATTCTGTAAATCAAGGGTAAAACAGTAAGTCTATAAATCGAGGGTAAAACGGCAATTTTACA
*
17132202 AGTCAAGGGCA
66 AATCAAGGGCA
17132213 TTTCTGTAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.27
Consensus pattern (81 bp):
GTAATTCTGTAAATCAAGGGTAAAACAGTAAGTCTATAAATCGAGGGTAAAACGGCAATTTTACA
AATCAAGGGCAAAACA
Found at i:17135246 original size:40 final size:40
Alignment explanation
Indices: 17135152--17135299 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
17135142 ACTCGAATTC
* * * * * *
17135152 TCGCACACTAACTGCCAATACATAGACGAAGCTATTTTAAT
1 TCGCACACTAAGTGCC-ATAAATAGCCAAAGCTATCTCAAT
*
17135193 CTCGTACACTAAGTGCCATAAATAGCCAAAGCTATCTCGAA-
1 -TCGCACACTAAGTGCCATAAATAGCCAAAGCTATCTC-AAT
*
17135234 TCGCACACTAAGTGCCATATATAGCCAAAGCTATCTCAAT
1 TCGCACACTAAGTGCCATAAATAGCCAAAGCTATCTCAAT
*
17135274 TCGCACACTAAGTGCCATACATAGCC
1 TCGCACACTAAGTGCCATAAATAGCC
17135300 GAATTGTCGT
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
39 2 0.02
40 60 0.64
41 16 0.17
42 16 0.17
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATAAATAGCCAAAGCTATCTCAAT
Found at i:17135507 original size:27 final size:28
Alignment explanation
Indices: 17135477--17135531 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
17135467 TATTTCTCCT
17135477 TTCTTGATC-AAATATATTCAAAATTAA
1 TTCTTGATCTAAATATATTCAAAATTAA
*
17135504 TTCTTGATCTAACTATATTCAAAATTAA
1 TTCTTGATCTAAATATATTCAAAATTAA
17135532 CTTATTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.42
Consensus pattern (28 bp):
TTCTTGATCTAAATATATTCAAAATTAA
Found at i:17161859 original size:25 final size:25
Alignment explanation
Indices: 17161831--17161881 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
17161821 CACTACAATT
17161831 TATAACACAAATCAAATAAAATTAA
1 TATAACACAAATCAAATAAAATTAA
17161856 TATAACACAAATCAAATAAAATTAA
1 TATAACACAAATCAAATAAAATTAA
17161881 T
1 T
17161882 CATTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.25
Consensus pattern (25 bp):
TATAACACAAATCAAATAAAATTAA
Found at i:17169851 original size:34 final size:34
Alignment explanation
Indices: 17169778--17169860 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
17169768 TAAGCCCTTA
** * **
17169778 ACAGTAGCAAAATCAGTGTGGGCCTTAGCCCGCT
1 ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
17169812 ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
1 ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
*
17169846 TCAGTA-CAGTATCAG
1 ACAGTAGCAGTATCAG
17169861 AAATGCATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 9 0.21
34 34 0.79
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (34 bp):
ACAGTAGCAGTATCAGTATGGGCCTTAGCCCAAT
Found at i:17178264 original size:52 final size:53
Alignment explanation
Indices: 17178193--17178298 Score: 187
Period size: 52 Copynumber: 2.0 Consensus size: 53
17178183 TTAATCAAAT
*
17178193 TTTCTTAGCATCTCTCAATTTCAAACATTT-CACAATTACCATCTATTTAACA
1 TTTCTTAGCATCTCTCAATTTCAAACATTTACACAATTACCATATATTTAACA
17178245 TTTCTTAGCATCTCTCAATTTCAAACATTTCACACAATTACCATATATTTAACA
1 TTTCTTAGCATCTCTCAATTTCAAACATTT-ACACAATTACCATATATTTAACA
17178299 AACTTTACAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 30 0.59
54 21 0.41
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.40
Consensus pattern (53 bp):
TTTCTTAGCATCTCTCAATTTCAAACATTTACACAATTACCATATATTTAACA
Found at i:17186198 original size:44 final size:44
Alignment explanation
Indices: 17186149--17186722 Score: 492
Period size: 44 Copynumber: 13.0 Consensus size: 44
17186139 CATAGCAAAC
* *
17186149 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTATAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAGT
* * * * * *
17186193 CTTATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-TAAGT
* * * * *
17186238 CTTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCTATAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAGT
17186282 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAT-AGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAG-T
17186326 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAT-AGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAG-T
* * * * *
17186370 CTTATCTCCCTGAAGTTGTAGTGGAGTAGATCT-AAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TGAAGTTA-TAAGT
* * * * * * *
17186415 CTTAACTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATAAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAGT
* * ** * *
17186459 CTTATCTCTCTAAAGTTATAGTAGAGCAGGTTGAAGTTAT-AGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAG-T
* * * * ** *
17186503 CTTATCTCCCTAAAGTTGCAGTGGAGTATATCGAAGATGGTAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTATAAGT
** * * * *
17186548 CTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAGT
* * * *
17186592 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATGACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAGT
* * * * * * *
17186636 CTTATCTCCCTGAAATTACAATAGAGCAGACTGAAGATAGCGAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA--TAAGT
* * * * *
17186681 CTTGTTTCCCTGAAATTGCAGTGGAACAGATTGAAGCTATAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAA
17186723 ATTAGAGATC
Statistics
Matches: 421, Mismatches: 98, Indels: 23
0.78 0.18 0.04
Matches are distributed among these distances:
43 6 0.01
44 280 0.67
45 131 0.31
46 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAAGT
Found at i:17186310 original size:133 final size:132
Alignment explanation
Indices: 17185924--17186722 Score: 566
Period size: 133 Copynumber: 6.0 Consensus size: 132
17185914 TATGGCGAAT
* * ** * * * *
17185924 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACGAACCTTATCTCCCTAAAGTTGCAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAG
* * * ** * * * * * * * * * * *
17185989 TGGAGCAGGTTGAAGTTACAAGTTTTGTCTCCCAGAAGTTGCAGTGGAGCAGACTGAAGATAGAA
66 TAGAGTAGATCAAAGATATAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA-TA
**
17186054 AAT
130 AGC
* * * * *
17186057 CTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAATTATAGATCTTATCTCTCTGAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-CA-A-ATCTTATCTCCCTGAA
* * * * * * * *
17186122 GTTGTAGTAGAGTAGATCATAG---CAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAA
59 GTTGCAGTAGAGTAGATCAAAGATATAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAA
* *
17186184 GTTATAAGT
124 GCTATAAGC
* * * * *
17186193 CTTATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGCA
* * * * * * *
17186258 GTAGAGCAGATTAAAGCTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAT-
65 GTAGAGTAGATCAAAGATATAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTATA
*
17186322 AGAT
130 AG-C
* * * *
17186326 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAGATCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAG
* * * * * *
17186391 TGGAGTAGATCTAAGATAGCAAATCTTAACTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
66 TAGAGTAGATCAAAGATA-TAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTATA
17186456 AGC
130 AGC
* * ** * * * * * *
17186459 CTTATCTCTCTAAAGTTATAGTAGAGCAGGTTGAAGTTATAGATCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAG
* * * * **
17186524 TGGAGTATATCGAAGATGGTAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCTATA
66 TAGAGTAGATCAAAGAT-ATAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTATA
17186589 AGC
130 AGC
* * * *
17186592 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-ATGACAAGTCTTATCTCCCTGAAATTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAATCTTATCTCCCTGAAGTTGCA
* * * ** * * * * * *
17186656 ATAGAGCAGA-CTGAAGATAGCGAATCTTGTTTCCCTGAAATTGCAGTGGAACAGATTGAAGCTA
65 GTAGAGTAGATC-AAAGATA-TAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
17186720 TAA
128 TAA
17186723 ATTAGAGATC
Statistics
Matches: 535, Mismatches: 114, Indels: 34
0.78 0.17 0.05
Matches are distributed among these distances:
130 33 0.06
131 1 0.00
132 40 0.07
133 360 0.67
134 4 0.01
136 33 0.06
137 36 0.07
139 1 0.00
140 27 0.05
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (132 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAG
TAGAGTAGATCAAAGATATAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAA
GC
Found at i:17186385 original size:177 final size:177
Alignment explanation
Indices: 17185923--17186722 Score: 722
Period size: 177 Copynumber: 4.5 Consensus size: 177
17185913 TTATGGCGAA
* * ** * *
17185923 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACGAACCTTATCTCCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTAAG-ATCTTATCTCCCTAAAGTTGCA
* * * * * * * *
17185988 ATGGAGCAGGTTGAAGTTACAAGTTTTGTCTCCCAGAAGTTGCAGTGGAGCAGACTGAAGATAGA
65 GTGGAGCAGATTGAAGTTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC
* * * *
17186053 AAATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAATTATAG
130 AAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGC--T-AA-TA-AG
* ** * * * *
17186106 ATCTTATCTCTCTGAAGTTGTAGTAGAGTAGA-TCATAG-CAA-ACCTTATCTCCCTAAAGTTGC
1 -TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGA-AGTTAAGATCTTATCTCCCTAAAGTTGC
* * * *
17186168 AGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGATAG
64 AGTGGAGCAGATTGAAGTTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * *
17186233 CAAATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCT-ATAAG
129 CAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCTAATAAG
* * *
17186281 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTATAGATCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTA-AGATCTTATCTCCCTAAAGTTGCA
* *
17186346 GTGGAGCAGATTGAAGTTAT-AGATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATCT-AAGATA
65 GTGGAGCAGATTGAAGTTATAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TGAAGATA
* *
17186409 GCAAATCTTAACTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCT-ATAAG
128 GCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCTAATAAG
* * * * *
17186458 CCTTATCTCTCTAAAGTTATAGTAGAGCAGGTTGAAGTTATAGATCTTATCTCCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTA-AGATCTTATCTCCCTAAAGTTGCA
* * * ** * ** * * *
17186523 GTGGAGTATATCGAAGATGGTAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATTAAAGCTA-
65 GTGGAGCAGATTGAAG-TTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* ** * ** * *
17186587 TAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAA--TGACAAG
129 CAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATT-AAAGCTAATAAG
* * * * * * *
17186635 TCTTATCTCCCTGAAATTACAATAGAGCAGACTGAAGATAGCGAATCTTGTTTCCCTGAAA-TTG
1 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTA-AG-ATCTTATCTCCCT-AAAGTTG
* *
17186699 CAGTGGAACAGATTGAAGCTATAA
63 CAGTGGAGCAGATTGAAGTTATAA
17186723 ATTAGAGATC
Statistics
Matches: 516, Mismatches: 86, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
174 29 0.06
175 5 0.01
176 6 0.01
177 262 0.51
178 66 0.13
179 5 0.01
181 111 0.22
183 4 0.01
184 28 0.05
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (177 bp):
TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGTTAAGATCTTATCTCCCTAAAGTTGCAG
TGGAGCAGATTGAAGTTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA
AATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCTAATAAG
Found at i:17186976 original size:44 final size:44
Alignment explanation
Indices: 17186921--17187084 Score: 177
Period size: 44 Copynumber: 3.7 Consensus size: 44
17186911 AGCAAAACTC
* * * ** * *
17186921 ATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGTTATAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAACAAATCCT
* * *
17186965 ATCTCCTTGAAGTTGCAGTGGAGCATATTGAAGCAACAAATCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAACAAATCCT
* * *
17187009 ATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCGACAAATCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAACAAATCCT
* *
17187053 A-CACCTCTGAAGTTGCAGTGGATCAGATTAAA
1 ATCTCC-CTGAAGTTGCAGTGGAGCAGATTAAA
17187085 TCTACCATAG
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
43 3 0.03
44 97 0.97
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAACAAATCCT
Found at i:17187188 original size:44 final size:44
Alignment explanation
Indices: 17187118--17187203 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
17187108 CCTAAAGTTG
* * *
17187118 CAGCGGAGTAGGATAAAACCATAAATCTTATATCTTTGAAATTA
1 CAGCGGAGTAGGATAAAACCACAAATCCTATATCTCTGAAATTA
* * *
17187162 CAGCGGAGTA-GATTGAAACTACAAATCCTATCTCTCTGAAAT
1 CAGCGGAGTAGGA-TAAAACCACAAATCCTATATCTCTGAAAT
17187204 GGCGATGGAG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.28
Consensus pattern (44 bp):
CAGCGGAGTAGGATAAAACCACAAATCCTATATCTCTGAAATTA
Found at i:17191341 original size:29 final size:30
Alignment explanation
Indices: 17191291--17191347 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
17191281 TGGTCCTTTT
* *
17191291 ATTTTTTATTTTATTTCTAATTT-GCCCAA
1 ATTTTTCATTTCATTTCTAATTTAGCCCAA
17191320 ATTTTTCATTTCATTT-TCAATTTAGCCC
1 ATTTTTCATTTCATTTCT-AATTTAGCCC
17191348 TTTTTTTGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 19 0.79
30 4 0.17
ACGTcount: A:0.23, C:0.18, G:0.04, T:0.56
Consensus pattern (30 bp):
ATTTTTCATTTCATTTCTAATTTAGCCCAA
Found at i:17191435 original size:28 final size:30
Alignment explanation
Indices: 17191402--17191459 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
17191392 TTATTACTAC
* *
17191402 TATCATTAT-ATTTTATT-TTTTATTAATT
1 TATCATTATCATTCTATTATTATATTAATT
17191430 TATCATTATCATTCTATTATTATATTAATT
1 TATCATTATCATTCTATTATTATATTAATT
17191460 AATTTTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.35
29 7 0.27
30 10 0.38
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (30 bp):
TATCATTATCATTCTATTATTATATTAATT
Found at i:17191520 original size:33 final size:34
Alignment explanation
Indices: 17191421--17191526 Score: 96
Period size: 33 Copynumber: 3.1 Consensus size: 34
17191411 ATTTTATTTT
* *
17191421 TTATTAA-TTTATCATTATCATT-CTATTATTATA
1 TTATTAATTTTAT-GTTATTATTACTATTATTATA
*
17191454 TTAATTAATTTTATGTTATTATTACTATAATTATA
1 TT-ATTAATTTTATGTTATTATTACTATTATTATA
**
17191489 TT-TTCTTTTTATGCTTA-T-TTACATATTATTATA
1 TTATTAATTTTATG-TTATTATTAC-TATTATTATA
17191522 TTATT
1 TTATT
17191527 GTATCCTTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
32 4 0.07
33 23 0.38
34 17 0.28
35 17 0.28
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (34 bp):
TTATTAATTTTATGTTATTATTACTATTATTATA
Found at i:17191688 original size:15 final size:15
Alignment explanation
Indices: 17191663--17191716 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 15
17191653 CTTTAGATTT
17191663 TTATT-ATATCATTA
1 TTATTAATATCATTA
17191677 TTATTAATATCACCATTA
1 TTATTAATAT---CATTA
*
17191695 TTATTAATATTATTA
1 TTATTAATATCATTA
*
17191710 TTCTTAA
1 TTATTAA
17191717 GTTGTTTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 5 0.15
15 14 0.41
18 15 0.44
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTAATATCATTA
Found at i:17194337 original size:22 final size:22
Alignment explanation
Indices: 17194303--17194344 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
17194293 CAAGGAACAC
*
17194303 CCGTCCGGGCTAAATCCTTTCT
1 CCGTCCGGACTAAATCCTTTCT
*
17194325 CCGTCTGGACTAAATCCTTT
1 CCGTCCGGACTAAATCCTTT
17194345 TCTGCAACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (22 bp):
CCGTCCGGACTAAATCCTTTCT
Found at i:17194436 original size:29 final size:29
Alignment explanation
Indices: 17194403--17194462 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
17194393 TCGGATTTCC
17194403 CTTTCTATTTCAACCAGGACATTTATCAT
1 CTTTCTATTTCAACCAGGACATTTATCAT
17194432 CTTTCTATTTCAACCAGGACATTTATCAT
1 CTTTCTATTTCAACCAGGACATTTATCAT
17194461 CT
1 CT
17194463 CTTGAATGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.42
Consensus pattern (29 bp):
CTTTCTATTTCAACCAGGACATTTATCAT
Found at i:17200773 original size:102 final size:103
Alignment explanation
Indices: 17200592--17200801 Score: 305
Period size: 102 Copynumber: 2.0 Consensus size: 103
17200582 GGTTATGCCT
* * * *
17200592 CACACGCCCGTGTGCTTGGGGACACACCCGTGTCCCTCACCCGTGTTGAATTATCTGGATTTATT
1 CACACGCCCATGTGCTTGAGGACACACCCGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATT
* *
17200657 TTACGTTTCTAACCTAC-AGGGGTTTTACACAACCAAG
66 TTACATTTCGAACCTACAAGGGGTTTTACACAACCAAG
* *
17200694 CACACGCCCATGTGCTTGAGGACACAGCTGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATT
1 CACACGCCCATGTGCTTGAGGACACACCCGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATT
* * **
17200759 TTCCATTTCGAACCTACAAGGGTTTTTACACGGCCAAG
66 TTACATTTCGAACCTACAAGGGGTTTTACACAACCAAG
17200797 CACAC
1 CACAC
17200802 ACTTGTGTCC
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 73 0.77
103 22 0.23
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (103 bp):
CACACGCCCATGTGCTTGAGGACACACCCGTGTCCCTCACCAGTGTTGAAATATCTGGATTTATT
TTACATTTCGAACCTACAAGGGGTTTTACACAACCAAG
Found at i:17203661 original size:20 final size:20
Alignment explanation
Indices: 17203638--17203676 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
17203628 TAAAATACAT
* *
17203638 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
17203658 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
17203677 CAATCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:17212530 original size:72 final size:72
Alignment explanation
Indices: 17212437--17212666 Score: 223
Period size: 72 Copynumber: 3.2 Consensus size: 72
17212427 CCCGCATTTC
* * * * * *
17212437 AGCTACTCATGGG-TCTGTACACAAAGTCAGCACCCGGACCCGAAAGCATTATCATG-TAATGC-
1 AGCTACTCACGGGCT-TATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGAT-ATGCT
*
17212499 CTGCTCATTG
64 C-GCTCAATG
* * * **
17212509 AGCTACTCACGGGCTTATACACAAAGTTAATACCCAGACCTTAAAACATTAACATGATATGCTCG
1 AGCTACTCACGGGCTTATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGATATGCTCG
*
17212574 CTCAACG
66 CTCAATG
** * * * *
17212581 ATTTACTCACGAGTTTATACACAAAGTCAGTACCTGGACCCCAAAACATTAACATGATATGCTCA
1 AGCTACTCACGGGCTTATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGATATGCTCG
*
17212646 CTCAGTG
66 CTCAATG
*
17212653 AGTTACTCACGGGC
1 AGCTACTCACGGGC
17212667 CTGATCACAT
Statistics
Matches: 127, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
72 124 0.98
73 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (72 bp):
AGCTACTCACGGGCTTATACACAAAGTCAGTACCCGGACCCCAAAACATTAACATGATATGCTCG
CTCAATG
Found at i:17222395 original size:26 final size:26
Alignment explanation
Indices: 17222366--17222417 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17222356 ATCAAAAGGG
*
17222366 GATATTGGAATGGTTTCTTTTTCTTT
1 GATATTAGAATGGTTTCTTTTTCTTT
17222392 GATATTAGAATGGTTTCTTTTTCTTT
1 GATATTAGAATGGTTTCTTTTTCTTT
17222418 TTCTTATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.08, G:0.17, T:0.58
Consensus pattern (26 bp):
GATATTAGAATGGTTTCTTTTTCTTT
Found at i:17228004 original size:23 final size:23
Alignment explanation
Indices: 17227974--17228020 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
17227964 ATTATGTAGT
17227974 TAGTGGAGGAGAGTTTCAAGGAA
1 TAGTGGAGGAGAGTTTCAAGGAA
17227997 TAGTGGAGGAGAGTTTCAAGGAA
1 TAGTGGAGGAGAGTTTCAAGGAA
17228020 T
1 T
17228021 TTGTAGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.38, T:0.23
Consensus pattern (23 bp):
TAGTGGAGGAGAGTTTCAAGGAA
Found at i:17232293 original size:47 final size:47
Alignment explanation
Indices: 17232239--17232331 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
17232229 AAGATAACAA
* *
17232239 AACATAAGAAAACCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTG
1 AACATAAGAAAACCAAAAACTCCTAAAGGAACTTGAAGGGAGATCTG
17232286 AACATAAGAAAACCAAAAACTCCTAAAGGAACTTGAAGGGAGATCT
1 AACATAAGAAAACCAAAAACTCCTAAAGGAACTTGAAGGGAGATCT
17232332 TTAGTCTTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.15
Consensus pattern (47 bp):
AACATAAGAAAACCAAAAACTCCTAAAGGAACTTGAAGGGAGATCTG
Found at i:17239055 original size:22 final size:22
Alignment explanation
Indices: 17239030--17239074 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
17239020 TTGAGAAGTG
17239030 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
17239052 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
17239074 T
1 T
17239075 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:17244575 original size:27 final size:27
Alignment explanation
Indices: 17244544--17244721 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
17244534 TAAATTGTAC
17244544 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
17244571 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
17244597 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
17244625 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
17244653 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
17244680 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
17244707 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
17244722 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:17244658 original size:82 final size:81
Alignment explanation
Indices: 17244545--17244700 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
17244535 AAATTGTACA
* *
17244545 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
17244609 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
17244626 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
17244691 TGCGAGTTGA
65 TGCGAATTGA
17244701 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:17244712 original size:82 final size:81
Alignment explanation
Indices: 17244541--17244721 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
17244531 GATTAAATTG
* *
17244541 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
17244606 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
17244622 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
17244686 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
17244704 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
17244722 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:17276067 original size:47 final size:47
Alignment explanation
Indices: 17276008--17276129 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
17275998 GCATTGGCAC
17276008 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
17276055 TAAGACAAGGATACCATGTAAAACCATCTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
17276102 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
17276130 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:17276072 original size:95 final size:92
Alignment explanation
Indices: 17275874--17276143 Score: 233
Period size: 95 Copynumber: 2.9 Consensus size: 92
17275864 ATTGACGGTT
** * * *
17275874 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCA
1 AAGGATACCATGTAAGACCACATCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
* *
17275939 TGTCAAGACATGGCATCGGCATTGATT
66 TGTCAAGACATGGCATCGGCATAGATC
**
17275966 AAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGACAAGGATACCATGTAAG
1 AAGGA-TACCATGTAAGACCACATCAAGACATGGCATTGG---TAAGACAAGGATACCATGTAAG
*** * *
17276030 ACCATGTTTGGAACATGGCATTTGGTA-AGA-C
62 ACCATGTCAAG-ACATGGCA-TCGGCATAGATC
* *** * *
17276061 AAGGATACCATGTAAAACCATC-TTTGGAACATGGCATTTGGTAAGATAAGGATATCATGTAAGA
1 AAGGATACCATGTAAGACCA-CATCAAG-ACATGGCA-TTGGTAAGACAAGGATACCATGTAAGA
* *
17276125 CCATGCCAAGGCATGGCAT
63 CCATGTCAAGACATGGCAT
17276144 TGATAAGTTC
Statistics
Matches: 141, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
92 34 0.24
93 8 0.06
94 28 0.20
95 46 0.33
96 17 0.12
97 8 0.06
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (92 bp):
AAGGATACCATGTAAGACCACATCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATCGGCATAGATC
Found at i:17276237 original size:55 final size:54
Alignment explanation
Indices: 17276108--17276304 Score: 263
Period size: 55 Copynumber: 3.6 Consensus size: 54
17276098 TTGGTAAGAT
* * *
17276108 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
17276162 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
17276217 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
17276270 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
17276305 ATGGTAAGTT
Statistics
Matches: 126, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.26
54 42 0.33
55 43 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:17279812 original size:35 final size:35
Alignment explanation
Indices: 17279760--17279826 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
17279750 TCTATCGCTG
* * *
17279760 CAAAAATATTTTTCCCTTCAAAACTAGAAGAGTTA
1 CAAAAATATTGTCCCCTTCAAAACTAAAAGAGTTA
* *
17279795 CAAAAATATTGTCCCCTTTAAGACTAAAAGAG
1 CAAAAATATTGTCCCCTTCAAAACTAAAAGAG
17279827 AAGCAAAAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28
Consensus pattern (35 bp):
CAAAAATATTGTCCCCTTCAAAACTAAAAGAGTTA
Found at i:17279834 original size:35 final size:36
Alignment explanation
Indices: 17279759--17279835 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 36
17279749 TTCTATCGCT
* * * *
17279759 GCAAAAATATTTTTCCCTTCAAAACTAGAAGAGTTA
1 GCAAAAATATTGTCCCCTTCAAAACTAAAAGAGTAA
* *
17279795 -CAAAAATATTGTCCCCTTTAAGACTAAAAGAG-AA
1 GCAAAAATATTGTCCCCTTCAAAACTAAAAGAGTAA
17279829 GCAAAAA
1 GCAAAAA
17279836 CGAGATGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.25
Consensus pattern (36 bp):
GCAAAAATATTGTCCCCTTCAAAACTAAAAGAGTAA
Found at i:17283130 original size:17 final size:17
Alignment explanation
Indices: 17283099--17283202 Score: 190
Period size: 17 Copynumber: 6.1 Consensus size: 17
17283089 CATGTTGTCT
*
17283099 GCCCGTGTGGGCCCATAC
1 GCCCGTGT-GGCCCACAC
17283117 GCCCGTGTGGCCCACAC
1 GCCCGTGTGGCCCACAC
17283134 GCCCGTGTGGCCCACAC
1 GCCCGTGTGGCCCACAC
17283151 GCCCGTGTGGCCCACAC
1 GCCCGTGTGGCCCACAC
17283168 GCCCGTGTGGCCCACAC
1 GCCCGTGTGGCCCACAC
17283185 GCCCGTGTGGCCCACAC
1 GCCCGTGTGGCCCACAC
17283202 G
1 G
17283203 ACCCAAATTG
Statistics
Matches: 85, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
17 77 0.91
18 8 0.09
ACGTcount: A:0.12, C:0.45, G:0.31, T:0.12
Consensus pattern (17 bp):
GCCCGTGTGGCCCACAC
Found at i:17291002 original size:43 final size:42
Alignment explanation
Indices: 17290915--17291005 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 42
17290905 AGCTCGCACA
* * * ** *
17290915 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATATCCCAGAAAGGGTCTTACACGAAATCACATAACG
* *
17290957 ATGCCATCATCCCAGAAAGGGTCTTATACGAAATCATATAACG
1 ATGCCAT-ATCCCAGAAAGGGTCTTACACGAAATCACATAACG
17291000 ATGCCA
1 ATGCCA
17291006 ATGTCCAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 7 0.17
43 33 0.82
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (42 bp):
ATGCCATATCCCAGAAAGGGTCTTACACGAAATCACATAACG
Found at i:17293514 original size:11 final size:10
Alignment explanation
Indices: 17293498--17293557 Score: 66
Period size: 11 Copynumber: 5.6 Consensus size: 10
17293488 TCCAATACCA
17293498 AATCATAGTCG
1 AATCAT-GTCG
* *
17293509 AATCATTTCA
1 AATCATGTCG
17293519 AATCACTGTCG
1 AATCA-TGTCG
17293530 AATCATTGTCG
1 AATCA-TGTCG
17293541 AATCATTGTCG
1 AATCA-TGTCG
17293552 AATCAT
1 AATCAT
17293558 AGTCAAACAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
10 8 0.19
11 35 0.81
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (10 bp):
AATCATGTCG
Found at i:17293522 original size:21 final size:21
Alignment explanation
Indices: 17293496--17293564 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 21
17293486 TTTCCAATAC
17293496 CAAATCATAGTCGAATCATT-T
1 CAAATCAT-GTCGAATCATTGT
17293517 CAAATCACTGTCGAATCATTGT
1 CAAATCA-TGTCGAATCATTGT
* *
17293539 CGAATCATTGTCGAATCATAGT
1 CAAATCA-TGTCGAATCATTGT
17293561 CAAA
1 CAAA
17293565 CAAGTTTGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
21 18 0.43
22 24 0.57
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.30
Consensus pattern (21 bp):
CAAATCATGTCGAATCATTGT
Found at i:17300710 original size:33 final size:33
Alignment explanation
Indices: 17300666--17300742 Score: 129
Period size: 33 Copynumber: 2.3 Consensus size: 33
17300656 AATTCTGGGC
17300666 TAGGCCGTGTGATCCACACGGCCAAGGCTAATT
1 TAGGCCGTGTGATCCACACGGCCAAGGCTAATT
*
17300699 TAGGCCTTGTGATCCACACGGCCAAGGCTAATT
1 TAGGCCGTGTGATCCACACGGCCAAGGCTAATT
17300732 T-GGACCGTGTG
1 TAGG-CCGTGTG
17300743 GGCCCACACG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
32 2 0.05
33 39 0.95
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (33 bp):
TAGGCCGTGTGATCCACACGGCCAAGGCTAATT
Found at i:17305649 original size:40 final size:40
Alignment explanation
Indices: 17305590--17305777 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
17305580 GAGCATTGGA
17305590 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
17305630 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
17305670 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
17305710 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
17305750 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
17305778 ATGTGTTTGC
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:17310923 original size:16 final size:18
Alignment explanation
Indices: 17310897--17310930 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
17310887 TAGAATTGGG
17310897 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
17310914 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
17310931 AAAAGAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:17314303 original size:23 final size:23
Alignment explanation
Indices: 17314272--17314319 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
17314262 TAGCTTAAAA
*
17314272 GAATGTAGAATTATTTCAAAGAT
1 GAATATAGAATTATTTCAAAGAT
17314295 GAATATAGAATTATTTCAAAGAT
1 GAATATAGAATTATTTCAAAGAT
17314318 GA
1 GA
17314320 GTAAGTGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.33
Consensus pattern (23 bp):
GAATATAGAATTATTTCAAAGAT
Found at i:17322298 original size:18 final size:18
Alignment explanation
Indices: 17322275--17322311 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
17322265 CAGAGAAGAA
17322275 AGCAAGAGTGGTTCGGCT
1 AGCAAGAGTGGTTCGGCT
17322293 AGCAAGAGTGGTTCGGCT
1 AGCAAGAGTGGTTCGGCT
17322311 A
1 A
17322312 AAGAAAACTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (18 bp):
AGCAAGAGTGGTTCGGCT
Found at i:17330185 original size:18 final size:18
Alignment explanation
Indices: 17330162--17330198 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
17330152 TAGAGAAGAA
*
17330162 AGCAAGAGTGGTTTGGCT
1 AGCAAGAGTGGTTCGGCT
17330180 AGCAAGAGTGGTTCGGCT
1 AGCAAGAGTGGTTCGGCT
17330198 A
1 A
17330199 AAGAAAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.14, G:0.38, T:0.24
Consensus pattern (18 bp):
AGCAAGAGTGGTTCGGCT
Found at i:17336337 original size:28 final size:28
Alignment explanation
Indices: 17336306--17336538 Score: 200
Period size: 28 Copynumber: 8.3 Consensus size: 28
17336296 ATAGATAAGG
* *
17336306 AAAGCCTTTGTTGTGAGTCATAAAAAGA
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* ** *
17336334 AAAGACTTTGTGGCAATTCATAAAAAGG
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * * **
17336362 GAAGTCATTGAAGTGATTCATAAAAAGA
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
*
17336390 TAAA-CCTTTATGGTGATTCATAAAAAGA
1 -AAAGCCTTTGTGGTGATTCATAAAAAGA
* * * *
17336418 ATAGCCTTTGTGGCGAATCATAAAAAGG
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * * *
17336446 AAAGCTTTTGTGATGATTCATAGAAAGG
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* *
17336474 AAAGCCTTTATGGTGAATCATAAAAAGA
1 AAAGCCTTTGTGGTGATTCATAAAAAGA
* * * *
17336502 ATAGCCTTTGTGGCGAATT-AAAAAAAGG
1 AAAGCCTTTGTGGTG-ATTCATAAAAAGA
17336530 AAAGCCTTT
1 AAAGCCTTT
17336539 ATGGCAAATC
Statistics
Matches: 158, Mismatches: 44, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
27 2 0.01
28 152 0.96
29 4 0.03
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (28 bp):
AAAGCCTTTGTGGTGATTCATAAAAAGA
Found at i:17336463 original size:84 final size:85
Alignment explanation
Indices: 17336318--17336534 Score: 273
Period size: 84 Copynumber: 2.6 Consensus size: 85
17336308 AGCCTTTGTT
* * * *
17336318 GTGAGTCATAAAAAGAAAAGACTTTGTGGC-AATTCATAAAAAGGGAAG-TCATTGAAGTGATTC
1 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAA-TCATAAAAAGGAAAGCTCATTGAAGTGATTC
17336381 ATA-AAAAGATAAACCTTTATG
65 ATAGAAAAGA-AAACCTTTATG
* * *
17336402 GTGATTCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGCT-TTTG-TGATGATTC
1 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGCTCATTGAAG-TGATTC
* *
17336465 ATAGAAAGGAAAGCCTTTATG
65 ATAGAAAAGAAAACCTTTATG
* *
17336486 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATTAAAAAAAGGAAAGC
1 GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGC
17336535 CTTTATGGCA
Statistics
Matches: 118, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
83 1 0.01
84 109 0.92
85 8 0.07
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.26
Consensus pattern (85 bp):
GTGAATCATAAAAAGAATAGCCTTTGTGGCGAATCATAAAAAGGAAAGCTCATTGAAGTGATTCA
TAGAAAAGAAAACCTTTATG
Found at i:17353599 original size:54 final size:54
Alignment explanation
Indices: 17353534--17353637 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
17353524 TTTTAATAAT
17353534 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTCAAAA
1 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTCAAAA
17353588 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTC
1 TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTC
17353638 CACACTAGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (54 bp):
TTTCCGAAAACATTACAAGATTATAACAAATTCAATAATTTTAATTAGTCAAAA
Found at i:17353666 original size:2 final size:2
Alignment explanation
Indices: 17353659--17353686 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
17353649 TCCTTATCTC
17353659 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17353687 CCATTTCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17366940 original size:10 final size:9
Alignment explanation
Indices: 17366927--17366979 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
17366917 AAAAATTAGA
17366927 AAAATGATAT
1 AAAAT-ATAT
*
17366937 AAAAATTTAT
1 -AAAATATAT
*
17366947 AAAATTTAT
1 AAAATATAT
17366956 AAAATATAT
1 AAAATATAT
*
17366965 AGAAATATAA
1 A-AAATATAT
17366975 AAAAT
1 AAAAT
17366980 TATTAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 22 0.58
10 11 0.29
11 5 0.13
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (9 bp):
AAAATATAT
Found at i:17366950 original size:9 final size:9
Alignment explanation
Indices: 17366938--17366995 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
17366928 AAATGATATA
17366938 AAAATTTAT
1 AAAATTTAT
17366947 AAAATTTAT
1 AAAATTTAT
*
17366956 AAAATATAT
1 AAAATTTAT
*
17366965 AGAAATATA-
1 A-AAATTTAT
*
17366974 AAAAATTATT
1 AAAATTTA-T
*
17366984 AAATTTTAT
1 AAAATTTAT
17366993 AAA
1 AAA
17366996 GTCGTAAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
8 5 0.12
9 23 0.56
10 13 0.32
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
AAAATTTAT
Found at i:17367053 original size:20 final size:20
Alignment explanation
Indices: 17366997--17367056 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
17366987 TTTTATAAAG
*
17366997 TCGTAAGAAAATTATACAAAA
1 TCGTAAAAAAATTATA-AAAA
* **
17367018 T-GTAAATAAA-TATAAATT
1 TCGTAAAAAAATTATAAAAA
17367036 TCGTAAAAAAATTATAAAAA
1 TCGTAAAAAAATTATAAAAA
17367056 T
1 T
17367057 TTTCGTACCA
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
18 3 0.10
19 12 0.40
20 14 0.47
21 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (20 bp):
TCGTAAAAAAATTATAAAAA
Found at i:17367248 original size:31 final size:31
Alignment explanation
Indices: 17367182--17367250 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 31
17367172 TAGAGGTCAT
**
17367182 TAATTTTTTTATGATTTTTATAAAATTTTAC
1 TAATTTTTTTATGATTTTTATAAAAAATTAC
17367213 -AATTTTTTTATGATTTTTATTAAAAAATT-C
1 TAATTTTTTTATGATTTTTA-TAAAAAATTAC
17367243 TAATTTTT
1 TAATTTTT
17367251 AATAATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 20 0.59
31 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (31 bp):
TAATTTTTTTATGATTTTTATAAAAAATTAC
Found at i:17377963 original size:25 final size:25
Alignment explanation
Indices: 17377842--17377990 Score: 138
Period size: 25 Copynumber: 6.0 Consensus size: 25
17377832 CACAGGTTTC
* *
17377842 ACAAAGAGTTCGCCACAAAAGTTTT
1 ACAAAGAGTTCGCCACAAAGGCTTT
* *
17377867 AGAGAA-AGTTCGCCACAAAGGCTTC
1 ACA-AAGAGTTCGCCACAAAGGCTTT
* * *
17377892 ACATAGAGTTTGCCACAGAGGCTTT
1 ACAAAGAGTTCGCCACAAAGGCTTT
* * *
17377917 ACAGAGAGTTCACCATAAAGGCTTT
1 ACAAAGAGTTCGCCACAAAGGCTTT
* **
17377942 ACAAAGAGTTCGCCATAAAGGCTGC
1 ACAAAGAGTTCGCCACAAAGGCTTT
** *
17377967 ACAGTGAGTTCGCTACAAAGGCTT
1 ACAAAGAGTTCGCCACAAAGGCTT
17377991 CATAGATAGT
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
24 1 0.01
25 96 0.97
26 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (25 bp):
ACAAAGAGTTCGCCACAAAGGCTTT
Found at i:17378007 original size:50 final size:50
Alignment explanation
Indices: 17377830--17378021 Score: 168
Period size: 50 Copynumber: 3.8 Consensus size: 50
17377820 ATAGAGAATT
* * * * * * * * *
17377830 CACACAGGTTTCACAAAGAGTTCGCCACAAAAGTTTTAGAGAAAGTTCGC
1 CACAAAGGCTTCACAAAGAGTTTGCCATAAAGGCTTCACAGAGAGTTCGC
* * * * *
17377880 CACAAAGGCTTCACATAGAGTTTGCCACAGAGGCTTTACAGAGAGTTCAC
1 CACAAAGGCTTCACAAAGAGTTTGCCATAAAGGCTTCACAGAGAGTTCGC
* * * * *
17377930 CATAAAGGCTTTACAAAGAGTTCGCCATAAAGGCTGCACAGTGAGTTCGC
1 CACAAAGGCTTCACAAAGAGTTTGCCATAAAGGCTTCACAGAGAGTTCGC
* * * * *
17377980 TACAAAGGCTTCATAGATAGTTTGCCATTAAGGCTTCACAGA
1 CACAAAGGCTTCACAAAGAGTTTGCCATAAAGGCTTCACAGA
17378022 ATATGCCATG
Statistics
Matches: 112, Mismatches: 30, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 112 1.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (50 bp):
CACAAAGGCTTCACAAAGAGTTTGCCATAAAGGCTTCACAGAGAGTTCGC
Found at i:17378013 original size:75 final size:75
Alignment explanation
Indices: 17377873--17378015 Score: 171
Period size: 75 Copynumber: 1.9 Consensus size: 75
17377863 TTTTAGAGAA
* * * *
17377873 AGTTCGCCACAAAGGCTTCACATAGAGTTTGCCACAGAGGCTTTACAGAGAGTTCACCATAAAGG
1 AGTTCGCCACAAAGGCTGCACATAGAGTTCGCCACAAAGGCTTCACAGAGAGTTCACCATAAAGG
17377938 CTTTACAAAG
66 CTTTACAAAG
* * * * ** *
17377948 AGTTCGCCATAAAGGCTGCACAGT-GAGTTCGCTACAAAGGCTTCATAGATAGTTTGCCATTAAG
1 AGTTCGCCACAAAGGCTGCACA-TAGAGTTCGCCACAAAGGCTTCACAGAGAGTTCACCATAAAG
17378012 GCTT
65 GCTT
17378016 CACAGAATAT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
75 55 0.98
76 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (75 bp):
AGTTCGCCACAAAGGCTGCACATAGAGTTCGCCACAAAGGCTTCACAGAGAGTTCACCATAAAGG
CTTTACAAAG
Found at i:17401399 original size:3 final size:3
Alignment explanation
Indices: 17401391--17401418 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
17401381 TATATTCTTG
17401391 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
17401419 GTACTAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:17403289 original size:37 final size:37
Alignment explanation
Indices: 17403236--17403350 Score: 194
Period size: 37 Copynumber: 3.1 Consensus size: 37
17403226 CATCATGCAG
*
17403236 CTTGTATACTTTTTCATTCACTAATGCCTCTTTATTAC
1 CTTGTATA-TTTTTCATTCACTAATGCCTTTTTATTAC
17403274 CTTGTATATTTTTCATTCACTAATGCCTTTTTATTAC
1 CTTGTATATTTTTCATTCACTAATGCCTTTTTATTAC
* *
17403311 CTTGTATATTTTTCATTCACTAATGCGTTTTTATTTC
1 CTTGTATATTTTTCATTCACTAATGCCTTTTTATTAC
17403348 CTT
1 CTT
17403351 TAACTTTCTC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 66 0.89
38 8 0.11
ACGTcount: A:0.20, C:0.20, G:0.06, T:0.54
Consensus pattern (37 bp):
CTTGTATATTTTTCATTCACTAATGCCTTTTTATTAC
Found at i:17410088 original size:5 final size:5
Alignment explanation
Indices: 17410080--17410107 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
17410070 TTTAATTTTT
17410080 AATAA AATAA AATAA AATAA AATAA AAT
1 AATAA AATAA AATAA AATAA AATAA AAT
17410108 CAATTTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:17410683 original size:13 final size:13
Alignment explanation
Indices: 17410665--17410710 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
17410655 GATGATAAAT
17410665 AAAATAAACGAGA
1 AAAATAAACGAGA
*
17410678 AAAATAAA--AAA
1 AAAATAAACGAGA
17410689 TAAAATAAACGAGA
1 -AAAATAAACGAGA
17410703 AAAATAAA
1 AAAATAAA
17410711 AAATGAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 2 0.07
12 8 0.29
13 16 0.57
14 2 0.07
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.11
Consensus pattern (13 bp):
AAAATAAACGAGA
Found at i:17410690 original size:25 final size:25
Alignment explanation
Indices: 17410661--17410719 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
17410651 TAATGATGAT
17410661 AAATAAAATAAACGAGAAAAATAAA
1 AAATAAAATAAACGAGAAAAATAAA
17410686 AAATAAAATAAACGAGAAAAATAAA
1 AAATAAAATAAACGAGAAAAATAAA
*
17410711 AAATGAAAT
1 AAATAAAAT
17410720 TGCAATTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.14
Consensus pattern (25 bp):
AAATAAAATAAACGAGAAAAATAAA
Found at i:17416538 original size:25 final size:24
Alignment explanation
Indices: 17416484--17416538 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
17416474 CATTCCCAGA
* * *
17416484 ATAACGTCAAATTCATAAAATGAC
1 ATAACATCAAATTAATAAAAAGAC
*
17416508 AGTAACATCAAATTAATAGAAAAGTC
1 A-TAACATCAAATTAATA-AAAAGAC
17416534 ATAAC
1 ATAAC
17416539 CTTGAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 18 0.72
26 6 0.24
ACGTcount: A:0.53, C:0.15, G:0.09, T:0.24
Consensus pattern (24 bp):
ATAACATCAAATTAATAAAAAGAC
Found at i:17418016 original size:39 final size:39
Alignment explanation
Indices: 17417962--17418042 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
17417952 GACATATTTT
17417962 ATCCATGTGAAAAAACAAAATCCACATAATTCAGGAAAC
1 ATCCATGTGAAAAAACAAAATCCACATAATTCAGGAAAC
17418001 ATCCATGTGAAAAAACAAAATCCACATAATTCAGGAAAC
1 ATCCATGTGAAAAAACAAAATCCACATAATTCAGGAAAC
17418040 ATC
1 ATC
17418043 ACACTATCAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.51, C:0.21, G:0.10, T:0.19
Consensus pattern (39 bp):
ATCCATGTGAAAAAACAAAATCCACATAATTCAGGAAAC
Found at i:17420754 original size:25 final size:25
Alignment explanation
Indices: 17420726--17420777 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
17420716 TTTGGCTTGA
**
17420726 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
17420751 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
17420776 CA
1 CA
17420778 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:17422046 original size:11 final size:11
Alignment explanation
Indices: 17422030--17422054 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
17422020 TCCAGTTGAT
17422030 GAAAATGAAGA
1 GAAAATGAAGA
17422041 GAAAATGAAGA
1 GAAAATGAAGA
17422052 GAA
1 GAA
17422055 TTCTAGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (11 bp):
GAAAATGAAGA
Found at i:17426969 original size:40 final size:39
Alignment explanation
Indices: 17426881--17426973 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 39
17426871 GACTATGTTC
17426881 GGCACTAAGTGTGCGATTCAAACAGCTTCGGCTATAAATA
1 GGCACTAAGTGTGCGATTCAAACAGCTTCGGCTAT-AATA
* * * *
17426921 -GCATTAAGTGTGCGAGTTGAAATAGCTTTGGCTAT-ATGA
1 GGCACTAAGTGTGCGA-TTCAAACAGCTTCGGCTATAAT-A
17426960 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
17426974 AATACTGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.04
39 15 0.33
40 28 0.62
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (39 bp):
GGCACTAAGTGTGCGATTCAAACAGCTTCGGCTATAATA
Found at i:17428665 original size:16 final size:16
Alignment explanation
Indices: 17428644--17428677 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17428634 CCAATATCCA
* *
17428644 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
17428660 ATTATCACATTTACAC
1 ATTATCACATTTACAC
17428676 AT
1 AT
17428678 ATATTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:17429789 original size:13 final size:13
Alignment explanation
Indices: 17429771--17429796 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17429761 CACAACTAAC
17429771 TTCGTAAATATTT
1 TTCGTAAATATTT
17429784 TTCGTAAATATTT
1 TTCGTAAATATTT
17429797 ATTAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
TTCGTAAATATTT
Done.