Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 69 of 310
Found at i:22020784 original size:21 final size:21
Alignment explanation
Indices: 22020760--22020806 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
22020750 CACTAAAAAT
*
22020760 TAAACCCCAAATCTTAAACCA
1 TAAACCCCAAATCCTAAACCA
* *
22020781 TAAACCCTAAATCCTAGACCA
1 TAAACCCCAAATCCTAAACCA
22020802 TAAAC
1 TAAAC
22020807 ATATATATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (21 bp):
TAAACCCCAAATCCTAAACCA
Found at i:22021424 original size:22 final size:22
Alignment explanation
Indices: 22021392--22021463 Score: 61
Period size: 22 Copynumber: 3.6 Consensus size: 22
22021382 CTATTGCGGC
*
22021392 GTTTAGGGTTTTAAGGGTTATA
1 GTTTAGTGTTTTAAGGGTTATA
22021414 GTTTAGTG-TTT-AGGGCTT-TA
1 GTTTAGTGTTTTAAGGG-TTATA
22021434 --TTA---TTTTAAGGGTTATA
1 GTTTAGTGTTTTAAGGGTTATA
*
22021451 GATTAGTGTTTTA
1 GTTTAGTGTTTTA
22021464 TGTTTTTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 18
0.68 0.02 0.31
Matches are distributed among these distances:
16 5 0.12
17 6 0.15
18 3 0.08
19 3 0.08
20 6 0.15
21 5 0.12
22 12 0.30
ACGTcount: A:0.22, C:0.01, G:0.26, T:0.50
Consensus pattern (22 bp):
GTTTAGTGTTTTAAGGGTTATA
Found at i:22021562 original size:41 final size:41
Alignment explanation
Indices: 22021500--22021834 Score: 451
Period size: 41 Copynumber: 8.2 Consensus size: 41
22021490 GGAGTTACTT
*
22021500 TGGTATTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
1 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
* * *
22021541 TGGTCTTTAGCGGCGTTTTACCAAAAGCACTGCTAATGCTC
1 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
*
22021582 TGGTTTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTC
1 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
* * *
22021623 TGGTCTTTAGCGGCGTTTTACCAAAAGCACTGCTAATGCTC
1 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
*
22021664 TGGTTTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTC
1 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
* *
22021705 TGGTCTTTAGCGGCGTTTCACCAAAAGCGCCGCTAATGCTC
1 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
* * * *
22021746 T-GTTTTTGGCGGCGTTTTAACAAAAAACGCCGCTATTGCTC
1 TGGTTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTC
* ** *
22021787 -AGTTTTTAGCGGCGTTTTTGTCAAAA-CGCCGCTATTGCTC
1 TGGTTTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTC
22021827 TGTGTTTT
1 TG-GTTTT
22021835 ACAATTTTTG
Statistics
Matches: 260, Mismatches: 29, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
40 28 0.11
41 223 0.86
42 9 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (41 bp):
TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
Found at i:22025856 original size:26 final size:26
Alignment explanation
Indices: 22025825--22025932 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
22025815 TGAAATGCCC
*
22025825 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
22025851 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
22025877 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
22025903 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22025929 ATCA
1 ATCA
22025933 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:22028039 original size:25 final size:26
Alignment explanation
Indices: 22028009--22028057 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
22027999 TAAATTGAGT
*
22028009 TATAAGTGTAATG-TTG-GTTTGAAAA
1 TATAAGTAT-ATGTTTGTGTTTGAAAA
22028034 TATAAGTATATGTTTGTGTTTGAA
1 TATAAGTATATGTTTGTGTTTGAA
22028058 GCCATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 11 0.52
26 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (26 bp):
TATAAGTATATGTTTGTGTTTGAAAA
Found at i:22037982 original size:16 final size:16
Alignment explanation
Indices: 22037961--22037996 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
22037951 TCTTACCTAA
22037961 ACATGGAAACATTACC
1 ACATGGAAACATTACC
22037977 ACATGGAAACATTACC
1 ACATGGAAACATTACC
22037993 ACAT
1 ACAT
22037997 TTCATACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.25, G:0.11, T:0.19
Consensus pattern (16 bp):
ACATGGAAACATTACC
Found at i:22040490 original size:27 final size:28
Alignment explanation
Indices: 22040451--22040508 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
22040441 AAAGTGGCTA
22040451 GGGGGCTAGGGTTTCTT-TGTTTTTTTTT
1 GGGGGCTAGGGTTT-TTCTGTTTTTTTTT
* *
22040479 GGGGGGTA-GGTTTTTCTTTTTTTTTTT
1 GGGGGCTAGGGTTTTTCTGTTTTTTTTT
22040506 GGG
1 GGG
22040509 TTAGGTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 2 0.07
27 18 0.67
28 7 0.26
ACGTcount: A:0.03, C:0.05, G:0.34, T:0.57
Consensus pattern (28 bp):
GGGGGCTAGGGTTTTTCTGTTTTTTTTT
Found at i:22040513 original size:25 final size:25
Alignment explanation
Indices: 22040470--22040518 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
22040460 GGTTTCTTTG
22040470 TTTTTTTTTGGGGGGTAGGTTTTTC
1 TTTTTTTTTGGGGGGTAGGTTTTTC
** *
22040495 TTTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTGGGGGGTAGGTTTTT
22040519 TTTGGGGGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.04, C:0.02, G:0.27, T:0.67
Consensus pattern (25 bp):
TTTTTTTTTGGGGGGTAGGTTTTTC
Found at i:22042691 original size:27 final size:27
Alignment explanation
Indices: 22042650--22042740 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
22042640 TTGTTACAAC
* *
22042650 TATTCTTTTAGAGTTTGCCACGAAGGT
1 TATTCTTTTAGAGTTCGCCACAAAGGT
**
22042677 TATTCTTTTTTAGTTCGCCACAAAGGT
1 TATTCTTTTAGAGTTCGCCACAAAGGT
* * * *
22042704 TATTCTTTCATAGTTCACCATAGAA-GT
1 TATTCTTTTAGAGTTCGCCACA-AAGGT
22042731 TATTCTTTTA
1 TATTCTTTTA
22042741 TGTCATGTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 52 0.96
28 2 0.04
ACGTcount: A:0.24, C:0.16, G:0.14, T:0.45
Consensus pattern (27 bp):
TATTCTTTTAGAGTTCGCCACAAAGGT
Found at i:22044316 original size:49 final size:49
Alignment explanation
Indices: 22044204--22044518 Score: 272
Period size: 49 Copynumber: 6.6 Consensus size: 49
22044194 CAATGATTAC
* * * *
22044204 TTTCACTATTTGTATAGTCTACCATCCT--A-GG-TCGATAATGATAGT
1 TTTCACTATTTGCATATTCTACCATCCTAGATGGCCCGACAATGATAGT
* * * *
22044249 TTTCACTATTTGTATATTCTACCATCCTAGATGACCCGAAAATGATGGT
1 TTTCACTATTTGCATATTCTACCATCCTAGATGGCCCGACAATGATAGT
* * * * * ** *
22044298 TTTCACTATTTACGTATTCTACCATCCTGGTTGGCTCGTTAACGATAG-
1 TTTCACTATTTGCATATTCTACCATCCTAGATGGCCCGACAATGATAGT
* *
22044346 -TTCACTATTTGCATATTCTACCATACCTA-TTGGCCCGACCATGAT-GAT
1 TTTCACTATTTGCATATTCTACCAT-CCTAGATGGCCCGACAATGATAG-T
* * * * * *
22044394 TTTCTCTATTTGCATATTCCACCATCCCA-AGTGACCCGACAACGATAAT
1 TTTCACTATTTGCATATTCTACCATCCTAGA-TGGCCCGACAATGATAGT
* * * *
22044443 TTTCACTATTTACATATTCT-CTCATCCTAGGTGGCCTGACAATGATGGT
1 TTTCACTATTTGCATATTCTAC-CATCCTAGATGGCCCGACAATGATAGT
22044492 TTTCACTATTTGCATATTCTACCATCC
1 TTTCACTATTTGCATATTCTACCATCC
22044519 CGGGTACTTG
Statistics
Matches: 214, Mismatches: 43, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
45 27 0.13
46 1 0.00
47 34 0.16
48 8 0.04
49 143 0.67
50 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (49 bp):
TTTCACTATTTGCATATTCTACCATCCTAGATGGCCCGACAATGATAGT
Found at i:22044431 original size:145 final size:146
Alignment explanation
Indices: 22044248--22044516 Score: 341
Period size: 145 Copynumber: 1.8 Consensus size: 146
22044238 ATAATGATAG
* * * * ** *
22044248 TTTTCACTATTTGTATATTCTACCATCCTAGATGACCCGAAAATGATGGTTTTCACTATTTACGT
1 TTTTCACTATTTGCATATTCCACCATCCAAGATGACCCGAAAACGATAATTTTCACTATTTACAT
**
22044313 ATTCTAC-CATCCT-GGTTGG-CTCGTTAACGATAG-TTCACTATTTGCATATTCTACCATACCT
66 ATTCT-CTCATCCTAGG-TGGCCT-GACAACGATAGTTTCACTATTTGCATATTCTACCATACCT
22044374 ATTGGCCCGACCATGATGA
128 ATTGGCCCGACCATGATGA
* *
22044393 TTTTCTCTATTTGCATATTCCACCATCCCAAG-TGACCCGACAACGATAATTTTCACTATTTACA
1 TTTTCACTATTTGCATATTCCACCAT-CCAAGATGACCCGAAAACGATAATTTTCACTATTTACA
* *
22044457 TATTCTCTCATCCTAGGTGGCCTGACAATGATGGTTTTCACTATTTGCATATTCTACCAT
65 TATTCTCTCATCCTAGGTGGCCTGACAACGATAG-TTTCACTATTTGCATATTCTACCAT
22044517 CCCGGGTACT
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
144 1 0.01
145 72 0.69
146 8 0.08
147 24 0.23
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (146 bp):
TTTTCACTATTTGCATATTCCACCATCCAAGATGACCCGAAAACGATAATTTTCACTATTTACAT
ATTCTCTCATCCTAGGTGGCCTGACAACGATAGTTTCACTATTTGCATATTCTACCATACCTATT
GGCCCGACCATGATGA
Found at i:22049154 original size:29 final size:29
Alignment explanation
Indices: 22049092--22049151 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
22049082 GACTTATTAA
***
22049092 AATTTTTAAAAATCAAAAACATTATTTTT
1 AATTTTTAAAAATCAAAAACATTAAAATT
*
22049121 AATTTTTAAAAATTAAAAATCATTAAAATT
1 AATTTTTAAAAATCAAAAA-CATTAAAATT
22049151 A
1 A
22049152 TTTAAAGAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (29 bp):
AATTTTTAAAAATCAAAAACATTAAAATT
Found at i:22049701 original size:12 final size:12
Alignment explanation
Indices: 22049680--22049723 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
22049670 ATTAATTTAG
22049680 TTTTTATATAAA
1 TTTTTATATAAA
*
22049692 TTTTTTTATAAA
1 TTTTTATATAAA
22049704 TATATTTATATAATA
1 T-T-TTTATATAA-A
22049719 TTTTT
1 TTTTT
22049724 CAGGTTAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 12 0.44
13 4 0.15
14 9 0.33
15 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTTTATATAAA
Found at i:22051993 original size:20 final size:20
Alignment explanation
Indices: 22051970--22052011 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22051960 TGAGAAAATA
*
22051970 ACAAAAAAATTTAAGTAAGT
1 ACAAAAAAATTTAAGGAAGT
* *
22051990 ACAAAAAATTTTGAGGAAGT
1 ACAAAAAAATTTAAGGAAGT
22052010 AC
1 AC
22052012 CATTATGAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.07, G:0.14, T:0.24
Consensus pattern (20 bp):
ACAAAAAAATTTAAGGAAGT
Found at i:22052395 original size:16 final size:17
Alignment explanation
Indices: 22052374--22052411 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
22052364 CAAAAGTTAC
*
22052374 GAGGATG-TAAATATAT
1 GAGGATGATAAAAATAT
22052390 GAGGATGCATAAAAATAT
1 GAGGATG-ATAAAAATAT
22052408 GAGG
1 GAGG
22052412 GAATACAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
18 12 0.63
ACGTcount: A:0.45, C:0.03, G:0.29, T:0.24
Consensus pattern (17 bp):
GAGGATGATAAAAATAT
Found at i:22052514 original size:19 final size:18
Alignment explanation
Indices: 22052481--22052543 Score: 67
Period size: 19 Copynumber: 3.5 Consensus size: 18
22052471 GAAGTGTAAA
* *
22052481 AAAAAATGATTATGTACC
1 AAAATATGATGATGTACC
*
22052499 GATAATATGATGATGTA--
1 -AAAATATGATGATGTACC
22052516 AAAATATGATGATGTACC
1 AAAATATGATGATGTACC
22052534 AAAAATATGA
1 -AAAATATGA
22052544 GAGAATGCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
16 15 0.41
19 22 0.59
ACGTcount: A:0.49, C:0.06, G:0.16, T:0.29
Consensus pattern (18 bp):
AAAATATGATGATGTACC
Found at i:22053360 original size:34 final size:33
Alignment explanation
Indices: 22053317--22053415 Score: 126
Period size: 34 Copynumber: 2.9 Consensus size: 33
22053307 GTACACATTA
*
22053317 CCAGAAACATATGTCAAATCAAAATGTCATATTC
1 CCAGAAACATAT-ACAAATCAAAATGTCATATTC
* *
22053351 CCAGAAACATATACTAGATCAAAATGTCATATTT
1 CCAGAAACATATAC-AAATCAAAATGTCATATTC
* *
22053385 TCAGAAACATATACCATATCAAAATGTCATA
1 CCAGAAACATATA-CAAATCAAAATGTCATA
22053416 ACATATCAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
33 1 0.02
34 56 0.97
35 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.27
Consensus pattern (33 bp):
CCAGAAACATATACAAATCAAAATGTCATATTC
Found at i:22055053 original size:17 final size:17
Alignment explanation
Indices: 22055031--22055063 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22055021 GATATGATAC
22055031 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
22055048 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
22055064 AACCAGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:22055064 original size:18 final size:17
Alignment explanation
Indices: 22055031--22055064 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
22055021 GATATGATAC
*
22055031 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
22055048 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
22055065 ACCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:22055355 original size:22 final size:21
Alignment explanation
Indices: 22055320--22055395 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
22055310 AAAAGGTATC
* *
22055320 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
22055341 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
22055364 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
22055383 TGC-AATCATATCT
1 TACAAATCATATCT
22055396 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:22055412 original size:35 final size:37
Alignment explanation
Indices: 22055349--22055446 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
22055339 ATTACAAAAT
22055349 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
22055385 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
22055420 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
22055447 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:22055454 original size:17 final size:19
Alignment explanation
Indices: 22055356--22055446 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
22055346 AATCATATCT
22055356 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22055375 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
22055393 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
22055410 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22055429 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
22055447 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:22055859 original size:45 final size:45
Alignment explanation
Indices: 22055797--22056070 Score: 279
Period size: 45 Copynumber: 6.1 Consensus size: 45
22055787 GGAAGGCGAT
* * *
22055797 ATCTGCTATCTTTGATCTGCTCCCCATCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
22055842 ATCTGTTACCTTCGATCTACTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
22055887 ATCTGCTT-T-TTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-TTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
22055931 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
22055976 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* *
22056021 ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAA
1 ATCTGTTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
22056068 ATC
1 ATC
22056071 ATCTTGGATC
Statistics
Matches: 187, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
43 8 0.04
44 43 0.23
45 105 0.56
46 2 0.01
47 19 0.10
48 5 0.03
49 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:22055962 original size:89 final size:89
Alignment explanation
Indices: 22055811--22055980 Score: 277
Period size: 89 Copynumber: 1.9 Consensus size: 89
22055801 GCTATCTTTG
*
22055811 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTACCTTCGATCTACTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTACTCCCCGTCTAATAC
22055876 AGAGACGCCAAATCTGCTTTTTCA
66 AGAGACGCCAAATCTGCTTTTTCA
* * * * *
22055900 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTACTCCCCGTCTAATAC
*
22055965 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
22055981 TCATCTTGGA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.28
Consensus pattern (89 bp):
ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTACTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTTTTCA
Found at i:22056139 original size:78 final size:78
Alignment explanation
Indices: 22056010--22056304 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
22056000 ATGTAAACAC
*
22056010 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
22056075 TGGATCTGCTTCA
66 TGGATCTGCTTCA
22056088 ATGAAGGTTCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGG-TCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
22056152 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* ** * *
22056166 ATGATGGTCAGATCTACTATATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
22056231 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * ** *
22056244 ATGAAGGTCAGATATGTTATGTCTTCAATCTGCTCTCCGTCGAATATGGAGATGCTAAATC
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
22056305 TGTTTCTTCG
Statistics
Matches: 197, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 3 0.02
78 191 0.97
79 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:22064615 original size:17 final size:17
Alignment explanation
Indices: 22064593--22064625 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22064583 GATATGATAC
22064593 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
22064610 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
22064626 AATCCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:22064626 original size:18 final size:17
Alignment explanation
Indices: 22064593--22064626 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
22064583 GATATGATAC
*
22064593 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
22064610 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
22064627 ATCCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:22064925 original size:23 final size:22
Alignment explanation
Indices: 22064882--22064939 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
22064872 AAGAGGTATC
* *
22064882 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
22064903 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
22064926 TGCATATCATATCT
1 TACAAATCATATCT
22064940 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:22064942 original size:19 final size:19
Alignment explanation
Indices: 22064918--22064954 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
22064908 AATCATATCT
22064918 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22064937 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
22064955 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:22064962 original size:17 final size:19
Alignment explanation
Indices: 22064921--22064962 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22064911 CATATCTTCT
*
22064921 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
22064940 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
22064957 AAGATT
1 AAGATT
22064963 ATATTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:22066397 original size:22 final size:21
Alignment explanation
Indices: 22066367--22066413 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
22066357 TACAAATGAA
22066367 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
22066389 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
22066410 ATCT
1 ATCT
22066414 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:22066419 original size:19 final size:19
Alignment explanation
Indices: 22066384--22066462 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
22066374 AGATTACAAG
22066384 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
22066405 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
22066422 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
22066441 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
22066460 ATC
1 ATC
22066463 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:22066442 original size:36 final size:38
Alignment explanation
Indices: 22066384--22066456 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
22066374 AGATTACAAG
22066384 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
*
22066422 ATCATATC-T-AATATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
22066457 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 1 0.03
38 8 0.24
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.40
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:22067364 original size:84 final size:85
Alignment explanation
Indices: 22067201--22067558 Score: 447
Period size: 84 Copynumber: 4.3 Consensus size: 85
22067191 ATCATCTTGG
** * *
22067201 ACCCTACTGCTTAAGGGG-TTAAGGTGCATCGTCGTCGATCTGCTCCGCTACTGCTTA-GG-GAT
1 ACCCTACTGCTT-AGGGGATTAA-G-GCAGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
22067263 AAGATCTGCAAATTTAACCTGTT
63 AAGATCTGCAAATTTAACCTGTT
* *
22067286 AGCCTACTG-TCTAGGGGACTAAGGCAG-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
1 ACCCTACTGCT-TAGGGGATTAAGGCAGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
*
22067349 GATCTGCAAATTTAACCCGTT
65 GATCTGCAAATTTAACCTGTT
*
22067370 ACCCTACTGCTTAGGGGATTAAGGC-GAGTCGTCGTCGATCTGCTCCGCTACTGCTTAGGGAGAT
1 ACCCTACTGCTTAGGGGATTAAGGCAGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGAT
*
22067434 AAGATCT-C-----GAACCTGTT
63 AAGATCTGCAAATTTAACCTGTT
* *
22067451 ACCCTACTACTTAGGGGATTAA-G-ATGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAA
1 ACCCTACTGCTTAGGGGATTAAGGCA-GAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
22067514 GATCTGCAAATTTAACCTGTT
65 GATCTGCAAATTTAACCTGTT
22067535 ACCCTACTGCTTAGGGGATTAAGG
1 ACCCTACTGCTTAGGGGATTAAGG
22067559 TACTGAATTT
Statistics
Matches: 239, Mismatches: 16, Indels: 36
0.82 0.05 0.12
Matches are distributed among these distances:
78 35 0.15
79 1 0.00
80 2 0.01
81 33 0.14
82 25 0.10
83 6 0.03
84 85 0.36
85 15 0.06
86 1 0.00
87 36 0.15
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (85 bp):
ACCCTACTGCTTAGGGGATTAAGGCAGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
ATCTGCAAATTTAACCTGTT
Found at i:22067508 original size:165 final size:165
Alignment explanation
Indices: 22067201--22067558 Score: 505
Period size: 165 Copynumber: 2.1 Consensus size: 165
22067191 ATCATCTTGG
*
22067201 ACCCTACTGCTTAAGGGG-TTAAGGTGCATCGTCGTCGATCTGCTCCGCTACTGCTTAGGGATAA
1 ACCCTACTGCTT-AGGGGATTAAGGCGCATCGTCGTCGATCTGCTCCGCTACTGCTTAGGGATAA
* * *
22067265 GATCTGCAAATTTAACCTGTTAGCCTACTGTCTAGGGGACTAAGGCAGGTCTTCGATCTGCTCCA
65 GATCTGC--A--GAACCTGTTACCCTACTCTCTAGGGGACTAAGGCAGGTCTTCGATCTGCTCCA
22067330 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCCGTT
126 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCCGTT
22067370 ACCCTACTGCTTAGGGGATTAAGGCG-AGTCGTCGTCGATCTGCTCCGCTACTGCTTAGGGAGAT
1 ACCCTACTGCTTAGGGGATTAAGGCGCA-TCGTCGTCGATCTGCTCCGCTACTGCTTA-GG-GAT
* *
22067434 AAGATCT-C-GAACCTGTTACCCTACTACT-TAGGGGATTAA-G-ATGAGTCTTCGATCTGCTCT
63 AAGATCTGCAGAACCTGTTACCCTACT-CTCTAGGGGACTAAGGCA-G-GTCTTCGATCTGCTCC
*
22067494 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
125 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCCGTT
22067535 ACCCTACTGCTTAGGGGATTAAGG
1 ACCCTACTGCTTAGGGGATTAAGG
22067559 TACTGAATTT
Statistics
Matches: 175, Mismatches: 7, Indels: 18
0.88 0.04 0.09
Matches are distributed among these distances:
163 1 0.01
164 2 0.01
165 104 0.59
166 1 0.01
168 6 0.03
169 48 0.27
170 3 0.02
171 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (165 bp):
ACCCTACTGCTTAGGGGATTAAGGCGCATCGTCGTCGATCTGCTCCGCTACTGCTTAGGGATAAG
ATCTGCAGAACCTGTTACCCTACTCTCTAGGGGACTAAGGCAGGTCTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTGCAAATTTAACCCGTT
Found at i:22068525 original size:6 final size:7
Alignment explanation
Indices: 22068508--22068565 Score: 62
Period size: 8 Copynumber: 7.7 Consensus size: 7
22068498 GGCCTCTCCA
22068508 TTTTTCC
1 TTTTTCC
22068515 TTTTTCC
1 TTTTTCC
22068522 TTTTTTCTC
1 -TTTTTC-C
*
22068531 TTTTTTC
1 TTTTTCC
*
22068538 TTTTTCTT
1 TTTTTC-C
22068546 TTTTTCTC
1 TTTTTC-C
22068554 TTTTTCC
1 TTTTTCC
22068561 TTTTT
1 TTTTT
22068566 TTTTTGAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
7 19 0.43
8 24 0.55
9 1 0.02
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTCC
Found at i:22068533 original size:16 final size:16
Alignment explanation
Indices: 22068508--22068566 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
22068498 GGCCTCTCCA
22068508 TTTTTCC-TTTTTC-C
1 TTTTTCCTTTTTTCTC
*
22068522 TTTTTTCTCTTTTT-TC
1 TTTTTCCT-TTTTTCTC
*
22068538 TTTTTCTTTTTTTCTC
1 TTTTTCCTTTTTTCTC
22068554 TTTTTCCTTTTTT
1 TTTTTCCTTTTTT
22068567 TTTTGAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
14 6 0.16
15 5 0.14
16 26 0.70
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTCCTTTTTTCTC
Found at i:22068570 original size:23 final size:23
Alignment explanation
Indices: 22068508--22068570 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
22068498 GGCCTCTCCA
*
22068508 TTTTTCCTTTTTCCTTTTTTCTC
1 TTTTTCCTTTTTCTTTTTTTCTC
*
22068531 TTTTTTCTTTTTCTTTTTTTCTC
1 TTTTTCCTTTTTCTTTTTTTCTC
22068554 TTTTTCCTTTTT-TTTTT
1 TTTTTCCTTTTTCTTTTT
22068571 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
22 5 0.14
23 32 0.86
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTCCTTTTTCTTTTTTTCTC
Found at i:22072781 original size:19 final size:19
Alignment explanation
Indices: 22072746--22072843 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
22072736 AGATTACAAG
22072746 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
22072767 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
22072786 AACATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
22072803 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
22072822 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
22072841 ATC
1 ATC
22072844 CTTAAAGATT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 15 0.21
19 47 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:22072808 original size:36 final size:37
Alignment explanation
Indices: 22072748--22072843 Score: 131
Period size: 36 Copynumber: 2.5 Consensus size: 37
22072738 ATTACAAGAT
22072748 CATATCTTCAAGATTGCATATCATATCTAAGATTGCATAA
1 CATATC-T-AAGATTG-ATATCATATCTAAGATTGCATAA
* *
22072788 CATATCTAAGATTG-TATCATATCTAATATTGCATAT
1 CATATCTAAGATTGATATCATATCTAAGATTGCATAA
22072824 CATATCTAAGATTGCATATC
1 CATATCTAAGATTG-ATATC
22072844 CTTAAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
36 34 0.65
38 11 0.21
39 1 0.02
40 6 0.12
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (37 bp):
CATATCTAAGATTGATATCATATCTAAGATTGCATAA
Found at i:22076989 original size:19 final size:19
Alignment explanation
Indices: 22076967--22077004 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22076957 TCACCATTAG
22076967 GGAGTTATATCGATGGAGT
1 GGAGTTATATCGATGGAGT
22076986 GGAGTTATATCGATGGAGT
1 GGAGTTATATCGATGGAGT
22077005 TGTTATGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.37, T:0.32
Consensus pattern (19 bp):
GGAGTTATATCGATGGAGT
Found at i:22086221 original size:592 final size:593
Alignment explanation
Indices: 22084913--22089665 Score: 8124
Period size: 592 Copynumber: 8.0 Consensus size: 593
22084903 TCCTAGCTTA
* *
22084913 GTATTTTTCTAAGGAGTTTGATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCT
1 GTATTTTT-TTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCT
* *
22084978 AAGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAACAATGAG
65 AAGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAG
* * *
22085043 AAGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAATTGAGGGTCAGGCAATTTGGCTATAGG
130 GAGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGG
* * *
22085108 CTCTAAATATGTGCTGAGTTTGGGGTCCTAGGCTAATTCCAAATTCTTTATTTTTTT-TAGTGTC
195 CTCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTC
*
22085172 GATTGGCTTTTCCATCTTTGCTAGCGGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTG
260 GATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTG
22085237 ATTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCAT
325 ATTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCAT
** *
22085302 ATTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGTTCGATTACTCTTTTGTGGTAAGTACCTT
390 ATTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTT
*
22085367 ATCTCTTTTTTCGGCTAGTATTGTTAATACCAATTACTCCCCTCCCTCACTCTTTTTTAATCAAC
455 ATCTC-TTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAAC
* * *
22085432 TTTGGTAAGGAATTAGTATCAGATATCGAATTTTAGCTCTCTATCGAATTGCTCCTTAGGTGTTT
519 TTTGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTT
*
22085497 TACGGTTTTG
584 TGCGGTTTTG
*
22085507 GTATTTTTTTATGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
1 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
22085572 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
66 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
*
22085637 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAAAGGC
131 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
22085702 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTCG
196 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTCG
* * *
22085767 ATTGGCTTTTCCATTTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCTTCAAATCTCTTTTGA
261 ATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTGA
* *
22085832 TTTACTCTTTGGGTTAGCCAATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCATA
326 TTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCATA
* *
22085897 TTAGTTTGAAAGCTGAAAAGTC-AAACTCCCTTGGGTCGATTACTCTTTTGGGGTAAGTACCTTA
391 TTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTTA
*
22085961 TCTCTTTTTCGGCTAGTATTATTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACTT
456 TCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACTT
* * *
22086026 TGGTTGGGAATTAGTATCAGATGTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTTA
521 TGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTTG
22086091 CGGTTTTG
586 CGGTTTTG
22086099 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
1 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
*
22086164 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGAAGTTATCAGGGAGAAAAACGAGG
66 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
*
22086229 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGTAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
131 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
* *
22086294 TCTAAATATGTGCTAAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCA-TTTTTTATAGTGTCT
196 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTCG
*
22086358 ATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTATTTTGA
261 ATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTGA
*
22086423 TTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTCAATTTGTGCCAAATAAACCTTATTCACCATA
326 TTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCATA
22086488 TTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTTA
391 TTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTTA
* * *
22086553 TCTCTTTTTCGGCTAGTATTGTTAATACTGATTACTGCCCTCTCTCACTCTTTTTTAATCAACTT
456 TCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACTT
* ** * *
22086618 TGGTAGGGTATTAGTATCAGATCTAAAATTTTAGCTCTCTATTGAATTGCTCCTTAGGTGTTTTG
521 TGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTTG
*
22086683 TGGTTTTG
586 CGGTTTTG
22086691 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
1 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
*
22086756 AGGGGAGTGTTTAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
66 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
22086821 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
131 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
* * *
22086886 TCTAAATATGTACTAAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCTTTTTTTTATAGTGTCG
196 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTCG
*
22086951 ATTGGCTTTTCCATCTTTGCTTA-CTGATTCTTTTGCCATTCTTTCTCTCTTCAGATCTCTTTTG
261 ATTGGCTTTTCCATCTTTGC-TAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTG
* *
22087015 ATTTACCCTTTGGGTTAGTCGATTCC-TCTTCTTTAACTTGTGCCAAATAAACCTTATTCACCAT
325 ATTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCAT
* *
22087079 ATTAGTTTGAAAGCTGAAAAGTAGAATCTCCCTTGGGCCGATTACTTTTTTGGGGTAAGTACCTT
390 ATTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTT
* * * *
22087144 ATCTCTTTTTCGGCTAGTATTGTTAATGCTGATTACTGCCCTCCCTCGCTCTTTTTTAATCAACT
455 ATCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACT
* * *
22087209 TTGGTAGGGAATTAGCATAAGATCTC-AGATTTTAGCTATCTGTCGAATTGCTCCTTAGGTGTTT
520 TTGGTAGGGAATTAGTATCAGATCTCGA-ATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTT
*
22087273 TACGGTTTTG
584 TGCGGTTTTG
*
22087283 GTATTTTTCTTAGGAGTTTAATTTTAGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCT
1 GTATTTTT-TTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCT
* *
22087348 AAGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGAGGAGTTATCAGGGAGGAAAACGAG
65 AAGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAG
* * * *
22087413 GAGATGAGAAGAGGGAAGTGATGGAACTGAATTGGGAGTTGAGGGTTAGGCAAGTTGGCTAGAGG
130 GAGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGG
*
22087478 CTCTAAATATGTGCTGTGTTTGGGATCCTAGGCTAATGCCAAATTCTTCA-TTTTTTATAGTGTC
195 CTCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTC
* *
22087542 GATTGGCTTTTCCATCTTTACTAGCTGATTCTTTTTCCATTCTTTCTCTCCTCAGATCTCTTTTG
260 GATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTG
*
22087607 ATTTACCCTTTGGGTTAGTCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCAT
325 ATTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCAT
22087672 ATTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTT
390 ATTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTT
* *
22087737 ATCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTTCCCTCCCTCACTC-TTTTTAATCAAAT
455 ATCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACT
* * * *
22087801 TTGGTAGGGAATTAGTATCAAATGTCTAATTTCAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTT
520 TTGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTT
22087866 GCGGTTTTG
585 GCGGTTTTG
*
22087875 GTATGTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
1 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
*
22087940 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACAAGG
66 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
* *
22088005 AGATGAGAAGGGGGAAGTGATGGAGTTGAATTGGTAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
131 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
*
22088070 TCTAAATATGTGCTAAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCA-TTTTTTATAGTGTCG
196 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTCG
* * * *
22088134 ATTGGCTTTTCCATTTTTGCTACCTGATTCTTTTTCCATTCTTTCTCTCTTCAGATCTCTTTTGA
261 ATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTGA
**
22088199 TTTACCCTTTGGGTTAGTTGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCATA
326 TTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCATA
*
22088264 TTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCAATTACTCTTTTGGGGTAAGTACCTTA
391 TTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTTA
** *
22088329 TCTCTTTTTCGGCTAGTATTGTTAATACTAATTACTCCCTTCCCTCACTCTTTTTTAATCAACTT
456 TCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACTT
* *
22088394 TGGTAGGGAATTAGTATCAGATGTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTTT
521 TGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTTG
22088459 CGGTTTTG
586 CGGTTTTG
*
22088467 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGTGTGAAGATGGACTCTA
1 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
* *
22088532 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATAAGGGAGAAAAACGAAG
66 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
*
22088597 AGATGAGAAGGGGGAAGTGAT-G-GCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTACAGGC
131 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
*
22088660 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTTATAATGTC
196 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCA-TTTTTTTATAGTGTC
*
22088725 GATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTATTTTG
260 GATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTG
*
22088790 ATTTACCCTTTGGGTTAGTCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCAT
325 ATTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCAT
* *
22088855 ATTAGTTTGAAAGCTAAAAAGTCGAATCTCCCTTGGGCCAATTACTCTTTTGGGGTAAGTACCTT
390 ATTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTT
*
22088920 ATCTCTTTTTCGGCTAGTATTGTTAATACTGATTACTCCCCTCCCTCACTCTTTTTTAATCAACT
455 ATCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACT
*
22088985 TTGGTAGGGAATTAGTATCAGATATCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTT
520 TTGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTT
*
22089050 GCAGTTTTG
585 GCGGTTTTG
22089059 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
1 GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
* *
22089124 AGGGGAGTGTTCAGAAGAGAAAATTTAGGGAATAGATTGGGGAGTTATCAGGGAGAAAAATGAGG
66 AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
** * * *
22089189 AGATGAGAAGAAGGAAGTGACGGAGCTGAATTGGGAGTTGAGGGTCAGGTAATTTGGCTATAGGC
131 AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
* *
22089254 TGTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTATATAGTGTCG
196 TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTCG
*
22089319 ATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCGTCAGATCTCTTTTGA
261 ATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTGA
*
22089384 TTTATCCTTTGGGTTAGCCGATTCATTCTTCTGCCCTTCTTCTTTAATTTGTGCCAAATAAACCT
326 TTTACCCTTTGGGTTAGCCG----A----T-T--CCTTCTTCTTTAATTTGTGCCAAATAAACCT
* * *
22089449 TATACACCATATTAGTTTAAAAGCTGAAAAGTCAAATCTCCCTTGGGCCGATTACTCTTTTGGGG
380 TATTCACCATATTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGG
*
22089514 TAAGTACCTTATCTCTTTTTCAGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTT
445 TAAGTACCTTATCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTT
* *
22089579 TTAATCAACTTTGGTAGGGAATTAGTATCAGATCTTGGATTTTAGCTCTCTGTCGAATTGCTCCT
510 TTAATCAACTTTGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCT
*
22089644 TAGGTGTTTTGCGGTATTG
575 TAGGTGTTTTGCGGTTTTG
22089663 GTA
1 GTA
22089666 AGTATTCCTC
Statistics
Matches: 3946, Mismatches: 188, Indels: 40
0.95 0.05 0.01
Matches are distributed among these distances:
590 86 0.02
591 637 0.16
592 1892 0.48
593 841 0.21
594 251 0.06
597 1 0.00
601 1 0.00
602 1 0.00
604 236 0.06
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (593 bp):
GTATTTTTTTAGGAGTTTAATTTTGGCCTTCTAGAAGGTTGGAAGTGGCGTGAAGATGGACTCTA
AGGGGAGTGTTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGG
AGATGAGAAGGGGGAAGTGATGGAGCTGAATTGGGAGTTGAGGGTCAGGCAATTTGGCTAGAGGC
TCTAAATATGTGCTGAGTTTGGGATCCTAGGCTAATGCCAAATTCTTCATTTTTTTATAGTGTCG
ATTGGCTTTTCCATCTTTGCTAGCTGATTCTTTTGCCATTCTTTCTCTCCTCAGATCTCTTTTGA
TTTACCCTTTGGGTTAGCCGATTCCTTCTTCTTTAATTTGTGCCAAATAAACCTTATTCACCATA
TTAGTTTGAAAGCTGAAAAGTCGAATCTCCCTTGGGCCGATTACTCTTTTGGGGTAAGTACCTTA
TCTCTTTTTCGGCTAGTATTGTTAATACCGATTACTCCCCTCCCTCACTCTTTTTTAATCAACTT
TGGTAGGGAATTAGTATCAGATCTCGAATTTTAGCTCTCTGTCGAATTGCTCCTTAGGTGTTTTG
CGGTTTTG
Found at i:22090012 original size:16 final size:15
Alignment explanation
Indices: 22089986--22090044 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 15
22089976 GTAGATCGGC
*
22089986 AAAAGCCGAAATGTCG
1 AAAAGTCGAAATG-CG
*
22090002 AAAAGTTGAAATGCTG
1 AAAAGTCGAAATGC-G
*
22090018 AAAAGTCAAAATGCCG
1 AAAAGTCGAAATG-CG
22090034 AAAAGTCGAAA
1 AAAAGTCGAAA
22090045 GTTTGGCTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 1 0.03
16 34 0.94
17 1 0.03
ACGTcount: A:0.49, C:0.14, G:0.22, T:0.15
Consensus pattern (15 bp):
AAAAGTCGAAATGCG
Found at i:22090172 original size:18 final size:18
Alignment explanation
Indices: 22090151--22090186 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
22090141 TGAATAGACC
22090151 AAATGGGT-TGAATGGGCT
1 AAATGGGTCTG-ATGGGCT
22090169 AAATGGGTCTGATGGGCT
1 AAATGGGTCTGATGGGCT
22090187 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.25, C:0.08, G:0.39, T:0.28
Consensus pattern (18 bp):
AAATGGGTCTGATGGGCT
Found at i:22090322 original size:57 final size:55
Alignment explanation
Indices: 22090255--22090401 Score: 172
Period size: 57 Copynumber: 2.6 Consensus size: 55
22090245 GTGAGCATGA
*
22090255 ATATAATGTGATTTGGGCCGGATGGGCCATAT-AA-ATGAGATTGGGCCTAATGGGCC
1 ATATAATGTGA-TTGGGCC-GATGGGCCATATGAACATGA-ATTGGGCCGAATGGGCC
*
22090311 ATATGAATGTGAATTGGGCCTGATGGGCCATATGAACGTGAATTGGGCCGAATGGGCC
1 ATAT-AATGTG-ATTGGGCC-GATGGGCCATATGAACATGAATTGGGCCGAATGGGCC
* *
22090369 ATATAAATGAGATTGGGCCTAGTGGGCCATATG
1 ATAT-AATGTGATTGGGCCGA-TGGGCCATATG
22090402 CATGTATGTA
Statistics
Matches: 80, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
56 5 0.06
57 44 0.55
58 28 0.35
59 3 0.04
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.26
Consensus pattern (55 bp):
ATATAATGTGATTGGGCCGATGGGCCATATGAACATGAATTGGGCCGAATGGGCC
Found at i:22090336 original size:29 final size:29
Alignment explanation
Indices: 22090255--22090406 Score: 170
Period size: 29 Copynumber: 5.3 Consensus size: 29
22090245 GTGAGCATGA
* *
22090255 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
22090283 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
22090311 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
22090340 ATATGAACGTGAATTGGGCC-GAATGGGCC
1 ATATGAATGTGAATTGGGCCTG-ATGGGCC
* *
22090369 ATATAAATGAG-ATTGGGCCT-AGTGGGCC
1 ATATGAATGTGAATTGGGCCTGA-TGGGCC
*
22090397 ATATGCATGT
1 ATATGAATGT
22090407 ATGTAGGGGT
Statistics
Matches: 105, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.01
28 49 0.47
29 55 0.52
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:22095043 original size:17 final size:18
Alignment explanation
Indices: 22094994--22095061 Score: 84
Period size: 17 Copynumber: 3.7 Consensus size: 18
22094984 TGAGTGAAAG
*
22094994 AGATTGCATATTATATCTA
1 AGATTGCA-ATCATATCTA
*
22095013 AGATTGCAATCATATTTA
1 AGATTGCAATCATATCTA
*
22095031 AGATTG-TATCATATCTA
1 AGATTGCAATCATATCTA
22095048 AGATTGCATATCAT
1 AGATTGCA-ATCAT
22095062 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
17 15 0.36
18 14 0.33
19 13 0.31
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (18 bp):
AGATTGCAATCATATCTA
Found at i:22095217 original size:21 final size:20
Alignment explanation
Indices: 22095180--22095218 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
22095170 TTGGACTTCG
**
22095180 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
22095200 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
22095219 TCTGGCCCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:22095474 original size:45 final size:45
Alignment explanation
Indices: 22095410--22095609 Score: 233
Period size: 45 Copynumber: 4.5 Consensus size: 45
22095400 GGCAGGCGAT
* * *
22095410 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
22095455 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGGCGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
** * *
22095500 ATCTGCTT-T-TTTAATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-TTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * ** *
22095544 ATCTGTTATCTCCGATTTGCTCCTTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
22095589 ATATGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
22095610 TCGATGTAAA
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
43 2 0.02
44 36 0.27
45 93 0.70
46 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:22095578 original size:89 final size:89
Alignment explanation
Indices: 22095427--22095590 Score: 256
Period size: 89 Copynumber: 1.8 Consensus size: 89
22095417 ATCTTTGATC
* *
22095427 TGCTCCCCGTCTAATATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGA
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATACAGA
*
22095492 GGCGCCAAATCTGCTTTTTTAATT
66 GACGCCAAATCTGCTTTTTTAATT
* * **
22095516 TGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCTTGTCTAATACAGA
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATACAGA
*
22095581 GATGCCAAAT
66 GACGCCAAAT
22095591 ATGTCATCTT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 67 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (89 bp):
TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATACAGA
GACGCCAAATCTGCTTTTTTAATT
Found at i:22095752 original size:78 final size:78
Alignment explanation
Indices: 22095622--22095917 Score: 450
Period size: 78 Copynumber: 3.8 Consensus size: 78
22095612 GATGTAAACA
* *
22095622 AATGAAGGTCAGATCTGCTATGTCTTTGATCAGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 AATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
22095687 TTGGATCTGCTTC
66 TTGGATCTGCTTC
* * *
22095700 AATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATATAGAGATGCCAAATCAT
1 AATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
*
22095764 CTTGGATCTGTTTC
65 CTTGGATCTGCTTC
* * *
22095778 AATGAAGGTCAGATCTACTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 AATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
22095843 TTGGATCTGCTTC
66 TTGGATCTGCTTC
* * * * *
22095856 AATGAAGGTCAGATCTGCTATGTCTTCGATCTGCGCTCCGTCGAATATAGAGATACCAAATC
1 AATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
22095918 TGTTTCTTCA
Statistics
Matches: 195, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
77 2 0.01
78 191 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (78 bp):
AATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
TTGGATCTGCTTC
Found at i:22107541 original size:21 final size:22
Alignment explanation
Indices: 22107515--22107558 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
22107505 AAAAGGTATC
*
22107515 TACAAATTAAATC-TCTAAGAT
1 TACAAATCAAATCTTCTAAGAT
*
22107536 TACAAATCATATCTTCTAAGAT
1 TACAAATCAAATCTTCTAAGAT
22107558 T
1 T
22107559 GCATATCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCAAATCTTCTAAGAT
Found at i:22107556 original size:22 final size:22
Alignment explanation
Indices: 22107515--22107571 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
22107505 AAAAGGTATC
* *
22107515 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
22107536 TACAAATCATATCTTCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* *
22107558 TGCATATCATATCT
1 TACAAATCATATCT
22107572 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 11 0.35
22 20 0.65
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:22107606 original size:35 final size:37
Alignment explanation
Indices: 22107543--22107640 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
22107533 GATTACAAAT
22107543 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
22107579 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
22107614 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
22107641 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:22107648 original size:17 final size:19
Alignment explanation
Indices: 22107550--22107640 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
22107540 AATCATATCT
22107550 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22107569 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
22107587 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
22107604 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22107623 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
22107641 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:22111554 original size:56 final size:56
Alignment explanation
Indices: 22111493--22111625 Score: 212
Period size: 56 Copynumber: 2.4 Consensus size: 56
22111483 TCCCAGACAG
* *
22111493 GGTCTTACTCGCACACATATAACAGAGTCACATATCGACACCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATAACAAAATCACATATCGACACCAACGTATTAAACGT
** *
22111549 GGTCTTACTCGCACACATATAACAAAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATAACAAAATCACATATCGACACCAACGTATTAAACGT
*
22111605 GGTCTTACTCACACACATATA
1 GGTCTTACTCGCACACATATA
22111626 TCGATGCCAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATAACAAAATCACATATCGACACCAACGTATTAAACGT
Found at i:22115651 original size:35 final size:35
Alignment explanation
Indices: 22115506--22115654 Score: 110
Period size: 33 Copynumber: 4.4 Consensus size: 35
22115496 ATAGCCTAGT
* *
22115506 TATGGTCTTACATATAAACACTGCCATGGTCCAAC
1 TATGGTCTTACATATAAACACTGCCATAGCCCAAC
* ** * * * *
22115541 CATGGTCTTAC--ATCCATAGTGCCATAACCCAAT
1 TATGGTCTTACATATAAACACTGCCATAGCCCAAC
* * * *
22115574 TAAGGTCTTATCAT-CAGA-A-TGCCATACCCCAAC
1 TATGGTCTTA-CATATAAACACTGCCATAGCCCAAC
* * *
22115607 TATGATCTTACATATAAACACTGCCATAGTCCAAA
1 TATGGTCTTACATATAAACACTGCCATAGCCCAAC
22115642 TATGGTCTTACAT
1 TATGGTCTTACAT
22115655 TTGAATAATT
Statistics
Matches: 84, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
32 3 0.04
33 44 0.52
34 3 0.04
35 34 0.40
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (35 bp):
TATGGTCTTACATATAAACACTGCCATAGCCCAAC
Found at i:22119887 original size:21 final size:19
Alignment explanation
Indices: 22119853--22119914 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
22119843 TAAGCTATAT
22119853 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
22119875 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
22119897 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
22119915 GCATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:22119966 original size:22 final size:22
Alignment explanation
Indices: 22119938--22119980 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22119928 AAAATATGGT
*
22119938 AAAATAAATAGTATAAAAAAAC
1 AAAATAAATAATATAAAAAAAC
*
22119960 AAAATAAATAATATATAAAAA
1 AAAATAAATAATATAAAAAAA
22119981 TATAAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAATAATATAAAAAAAC
Found at i:22120030 original size:18 final size:18
Alignment explanation
Indices: 22120007--22120042 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22119997 ATTATAAGGA
22120007 ATAGTAAATAATAAAAAT
1 ATAGTAAATAATAAAAAT
**
22120025 ATAGTATGTAATAAAAAT
1 ATAGTAAATAATAAAAAT
22120043 TCATAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
ATAGTAAATAATAAAAAT
Found at i:22120212 original size:40 final size:39
Alignment explanation
Indices: 22120168--22120281 Score: 111
Period size: 40 Copynumber: 3.1 Consensus size: 39
22120158 TTAAAAATAT
22120168 ATATGATGTATAGCCCATATTATAGGTAAAATATAAAAC-
1 ATAT-ATGTATAGCCCATATTATAGGTAAAATATAAAACA
* * *
22120207 A-ATATGTATA--TCATA-TA-A--TAGAATTTAAAA-A
1 ATATATGTATAGCCCATATTATAGGTAAAATATAAAACA
22120238 TATATAATGTATAGCCCATATTATAGGTAAAATATAAAACA
1 -ATAT-ATGTATAGCCCATATTATAGGTAAAATATAAAACA
22120279 ATA
1 ATA
22120282 AATAGGATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 21
0.68 0.07 0.25
Matches are distributed among these distances:
31 10 0.17
32 1 0.02
33 3 0.05
34 9 0.16
35 4 0.07
36 4 0.07
37 9 0.16
38 3 0.05
39 1 0.02
40 13 0.22
41 1 0.02
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.32
Consensus pattern (39 bp):
ATATATGTATAGCCCATATTATAGGTAAAATATAAAACA
Found at i:22120256 original size:71 final size:72
Alignment explanation
Indices: 22120140--22120281 Score: 259
Period size: 71 Copynumber: 2.0 Consensus size: 72
22120130 TATAAAAATA
22120140 TATAACATATAATAGAATTTAAAAATATATATGATGTATAGCCCATATTATAGGTAAAATATAAA
1 TATAACATATAATAGAATTTAAAAATATATA-GATGTATAGCCCATATTATAGGTAAAATATAAA
22120205 ACAATATG
65 ACAATATG
*
22120213 TATATCATATAATAGAATTTAAAAATATATA-ATGTATAGCCCATATTATAGGTAAAATATAAAA
1 TATAACATATAATAGAATTTAAAAATATATAGATGTATAGCCCATATTATAGGTAAAATATAAAA
22120277 CAATA
66 CAATA
22120282 AATAGGATAT
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
71 38 0.56
73 30 0.44
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.33
Consensus pattern (72 bp):
TATAACATATAATAGAATTTAAAAATATATAGATGTATAGCCCATATTATAGGTAAAATATAAAA
CAATATG
Found at i:22120492 original size:123 final size:130
Alignment explanation
Indices: 22120321--22120568 Score: 388
Period size: 125 Copynumber: 2.0 Consensus size: 130
22120311 ATTATAAAAT
*
22120321 AAATAATATACATATATAAAATATATAAATAAGAAAAGGTGT-A-ATATATAAATGGAATATGAA
1 AAATAATATACATACATAAAATATAT-AATAAGAAAAGGTGTAATATATATAAATGGAATATGAA
*
22120384 TATTATTATAAATAAGGATAATATATATACTATTATTTATTAAT-A-TTTTTTT-AAATTTAAAT
65 TACTATTATAAATAAGGAT-A-ATATATACTATTATTTATTAATAACTTTTTTTAAAATTTAAAT
22120446 ATA
128 ATA
22120449 AAATAA-ATA-ATACATAAAATATAT-A-AAGAAAAGGTGTAATATATATAAATGGAATATGAAT
1 AAATAATATACATACATAAAATATATAATAAGAAAAGGTGTAATATATATAAATGGAATATGAAT
22120510 ACTATTATAAATAAGGATAATATATACTATTATTTATTAATAACTTTTTTTAAAATTTA
66 ACTATTATAAATAAGGATAATATATACTATTATTTATTAATAACTTTTTTTAAAATTTA
22120569 TTTGCCATTT
Statistics
Matches: 113, Mismatches: 2, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
123 34 0.30
124 4 0.04
125 45 0.40
126 21 0.19
127 3 0.03
128 6 0.05
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (130 bp):
AAATAATATACATACATAAAATATATAATAAGAAAAGGTGTAATATATATAAATGGAATATGAAT
ACTATTATAAATAAGGATAATATATACTATTATTTATTAATAACTTTTTTTAAAATTTAAATATA
Found at i:22122738 original size:206 final size:206
Alignment explanation
Indices: 22122384--22126036 Score: 5809
Period size: 206 Copynumber: 17.7 Consensus size: 206
22122374 AATCTGCTTA
* *
22122384 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC-
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * *
22122448 AGACAAACCAAATCAGCTATGTCTTCGATTTTCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 TGA-AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
22122513 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
130 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
22122578 GAGACGCCAAAC
195 GAGACGCCAAAC
* *
22122590 TTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCATAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * *
22122655 CGAAAACCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * *
22122720 GATCTGCTTCATTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATAGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
22122785 AGACGCCAAAC
196 AGACGCCAAAC
22122796 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
*
22122861 CGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * *
22122926 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTACTATGTTTCTGCCCTCCGTAGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
* *
22122991 AAACGCCAAAA
196 AGACGCCAAAC
*
22123002 TTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
*
22123067 CGGAAA-CCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 -TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
22123131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
130 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
22123196 GAGACACCAAAC
195 GAGACGCCAAAC
* * *
22123208 TTCAATTTTTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22123273 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * * * ** * *
22123338 GATCTTACTTCAGTATAAACATCTGAAAGCCAGATCTGCTATCTGTCTGCTCTCCTGTCGAATAT
131 GATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCC-GTCGAATAT
* *
22123403 GAAAACGCCAAAC
194 GGAGACGCCAAAC
* *
22123416 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22123481 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * **
22123546 GATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
22123611 GAGACGCCAAAC
195 GAGACGCCAAAC
* *
22123623 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22123688 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * **
22123753 GATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
22123818 GAGACGCCAAAC
195 GAGACGCCAAAC
* *
22123830 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22123895 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * **
22123960 GATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
22124025 GAGACGCCAAAC
195 GAGACGCCAAAC
* *
22124037 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22124102 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * **
22124167 GATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
22124232 GAGACGCCAAAC
195 GAGACGCCAAAC
* *
22124244 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22124309 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* * **
22124374 GATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
22124439 GAGACGCCAAAC
195 GAGACGCCAAAC
*
22124451 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTACTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * *
22124516 CGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
22124581 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
*
22124646 AGACACCAAAC
196 AGACGCCAAAC
* *
22124657 TTCAATTTTTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * * * *
22124722 CGAAAACCATATCAGTTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
*
22124787 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGTCCTCCGTCGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
22124852 AGACGCCAAAC
196 AGACGCCAAAC
* *
22124863 TTCGATTTGTCCTCTGACAATACAGAGATGCCAAATCATCATAGACTTGCTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22124928 CGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
22124993 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
* * *
22125058 AGTCACCAAAT
196 AGACGCCAAAC
*
22125069 TTCGATTTTTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * * *
22125134 CGAAAACCAAATCAACTATGTCTTCGATTTGCTTTCTTGTAAGCACAAGGATACCAAACCATCTT
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGC-TCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
22125199 GGATCTACTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGCCCTCCATCGAATATG
130 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
* *
22125264 GAGATGCTAAAC
195 GAGACGCCAAAC
* * * * * * *
22125276 TTTGATTTATTCACTAACAATACAGAGATGTCAAATCATCTTAGACTTGCTTCAGCGTAAGTACA
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * * * * * *
22125341 TGAAAGCTAAATCAGCTATGAT-TTTGATTTGTTCCTTGTAAACAAAAGGATGCCAAATCATCTT
66 TGAAAGCCAAATCAGCTATG-TCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * ** * * *
22125405 GGATCTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATA
130 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
22125470 AAGACGCCAAAC
195 GAGACGCCAAAC
* * * *
22125482 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTACTTCATCGAAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * *
22125547 TGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGTACAAGGATAACAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
*
22125612 GATCTACTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
*
22125677 AGATGCCAAAC
196 AGACGCCAAAC
22125688 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* * * *
22125753 CGAAAACCAAATCAGATATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
* *
22125818 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
22125883 AGACGCCAAAC
196 AGACGCCAAAC
* * * * *
22125894 TTCGATTTATTCTCTGACAATAGAGAGATGCCAAATCATCTTAGATTTGCTTCATCGAAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
* *
22125959 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
22126024 GATCTTGCTTCAG
131 GATC-TGCTTCAG
22126037 CCAGATCTGC
Statistics
Matches: 3245, Mismatches: 193, Indels: 17
0.94 0.06 0.00
Matches are distributed among these distances:
205 5 0.00
206 1836 0.57
207 1206 0.37
208 198 0.06
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (206 bp):
TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACG
TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
AGACGCCAAAC
Found at i:22137204 original size:26 final size:26
Alignment explanation
Indices: 22137168--22137222 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
22137158 TTAAGACCAA
22137168 AAACCCGATCCAAAGCCAATCAGTTT
1 AAACCCGATCCAAAGCCAATCAGTTT
22137194 AAACCCGATCCAAAGCCAATCAGTTT
1 AAACCCGATCCAAAGCCAATCAGTTT
22137220 AAA
1 AAA
22137223 AACAGTCCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.29, G:0.11, T:0.18
Consensus pattern (26 bp):
AAACCCGATCCAAAGCCAATCAGTTT
Found at i:22137231 original size:26 final size:26
Alignment explanation
Indices: 22137174--22137231 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
22137164 CCAAAAACCC
* *
22137174 GATCCAAAGCCAATCAGTTTAAACCC
1 GATCCAAAGCCAATCAGTTTAAAACA
22137200 GATCCAAAGCCAATCAGTTTAAAAACA
1 GATCCAAAGCCAATCAGTTT-AAAACA
22137227 G-TCCA
1 GATCCA
22137232 GAGAGTCCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.41, C:0.28, G:0.12, T:0.19
Consensus pattern (26 bp):
GATCCAAAGCCAATCAGTTTAAAACA
Found at i:22138079 original size:18 final size:17
Alignment explanation
Indices: 22138048--22138093 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
22138038 GGCCCAAATT
*
22138048 TCACATGCCCATGTAGGC
1 TCACACGCCCATGT-GGC
*
22138066 TCACACGCCTATGTGGC
1 TCACACGCCCATGTGGC
*
22138083 CCACACGCCCA
1 TCACACGCCCA
22138094 ATTTGGTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.22, C:0.41, G:0.20, T:0.17
Consensus pattern (17 bp):
TCACACGCCCATGTGGC
Found at i:22140167 original size:13 final size:13
Alignment explanation
Indices: 22140149--22140177 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22140139 AAATAGGGGA
22140149 AAATTTAATTTTG
1 AAATTTAATTTTG
22140162 AAATTTAATTTTG
1 AAATTTAATTTTG
22140175 AAA
1 AAA
22140178 ACAAAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
AAATTTAATTTTG
Found at i:22145948 original size:27 final size:27
Alignment explanation
Indices: 22145900--22146058 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
22145890 GCGAGGCTGC
* *
22145900 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
22145927 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
22145953 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
22145980 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
22146007 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
22146034 CAAATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
22146059 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:22146059 original size:54 final size:54
Alignment explanation
Indices: 22145918--22146061 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
22145908 GTGACGAAGT
* *
22145918 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
22145972 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
22146026 CACCAGATCAAATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
22146062 GCTTCCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:22146461 original size:8 final size:8
Alignment explanation
Indices: 22146448--22146481 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
22146438 CTCAAAATAC
22146448 CGGCTTTT
1 CGGCTTTT
22146456 CGGCTTTT
1 CGGCTTTT
*
22146464 CAGCTTTT
1 CGGCTTTT
*
22146472 TGGCTTTT
1 CGGCTTTT
22146480 CG
1 CG
22146482 ACTTGTGCCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.24, G:0.24, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:22147695 original size:26 final size:26
Alignment explanation
Indices: 22147664--22147771 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
22147654 TGAAATGCCC
*
22147664 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
22147690 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
22147716 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
22147742 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22147768 ATCA
1 ATCA
22147772 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:22151710 original size:22 final size:22
Alignment explanation
Indices: 22151682--22151730 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
22151672 CAATGTTGTT
22151682 GTTATCATGTGGTGTAATATTA
1 GTTATCATGTGGTGTAATATTA
22151704 GTTATCATGTGGTGTAATATTA
1 GTTATCATGTGGTGTAATATTA
22151726 GTTAT
1 GTTAT
22151731 GCACTTGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.47
Consensus pattern (22 bp):
GTTATCATGTGGTGTAATATTA
Found at i:22151743 original size:22 final size:22
Alignment explanation
Indices: 22151682--22151793 Score: 86
Period size: 22 Copynumber: 5.0 Consensus size: 22
22151672 CAATGTTGTT
*
22151682 GTTATCATGTGGTGTAATATTA
1 GTTATCATGTGGTATAATATTA
*
22151704 GTTATCATGTGGTGTAATATTA
1 GTTATCATGTGGTATAATATTA
*
22151726 GTTATGCACT-TGG-ATAATATTGTT
1 GTTAT-CA-TGTGGTATAATA-T-TA
* * *
22151750 GTTATCATGCGGTGTAATACTA
1 GTTATCATGTGGTATAATATTA
* *
22151772 ATTATGCATTTGG-ATAATATTA
1 GTTAT-CATGTGGTATAATATTA
22151794 TTAATTTCTA
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
22 45 0.62
23 15 0.21
24 12 0.17
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.44
Consensus pattern (22 bp):
GTTATCATGTGGTATAATATTA
Found at i:22151751 original size:68 final size:68
Alignment explanation
Indices: 22151642--22151768 Score: 209
Period size: 68 Copynumber: 1.9 Consensus size: 68
22151632 GATACTTTTA
* * *
22151642 ATGTGGTGTAATATTTGTTATACACTTGGACAATGTTGTTGTTATCATGTGGTGTAATATTAGTT
1 ATGTGGTGTAATATTAGTTATACACTTGGACAATATTGTTGTTATCATGCGGTGTAATATTAGTT
22151707 ATC
66 ATC
* *
22151710 ATGTGGTGTAATATTAGTTATGCACTTGGATAATATTGTTGTTATCATGCGGTGTAATA
1 ATGTGGTGTAATATTAGTTATACACTTGGACAATATTGTTGTTATCATGCGGTGTAATA
22151769 CTAATTATGC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (68 bp):
ATGTGGTGTAATATTAGTTATACACTTGGACAATATTGTTGTTATCATGCGGTGTAATATTAGTT
ATC
Found at i:22151764 original size:46 final size:46
Alignment explanation
Indices: 22151704--22151792 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
22151694 TGTAATATTA
* * *
22151704 GTTATCATGTGGTGTAATATTAGTTATGCACTTGGATAATATTGTT
1 GTTATCATGCGGTGTAATACTAATTATGCACTTGGATAATATTGTT
*
22151750 GTTATCATGCGGTGTAATACTAATTATGCATTTGGATAATATT
1 GTTATCATGCGGTGTAATACTAATTATGCACTTGGATAATATT
22151793 ATTAATTTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (46 bp):
GTTATCATGCGGTGTAATACTAATTATGCACTTGGATAATATTGTT
Found at i:22151790 original size:68 final size:68
Alignment explanation
Indices: 22151642--22151793 Score: 198
Period size: 68 Copynumber: 2.2 Consensus size: 68
22151632 GATACTTTTA
* * * * * *
22151642 ATGTGGTGTAATATTTGTTATACACTTGGACAATGTTGTTGTTATCATGTGGTGTAATATTAGTT
1 ATGTGGTATAATATTAGTTATACACTTGGACAATATTGTTGTTATCATGCGGTGTAATACTAATT
22151707 ATC
66 ATC
* * *
22151710 ATGTGGTGTAATATTAGTTATGCACTTGGATAATATTGTTGTTATCATGCGGTGTAATACTAATT
1 ATGTGGTATAATATTAGTTATACACTTGGACAATATTGTTGTTATCATGCGGTGTAATACTAATT
22151775 ATGC
66 AT-C
*
22151779 ATTTGG-ATAATATTA
1 ATGTGGTATAATATTA
22151794 TTAATTTCTA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
68 68 0.92
69 6 0.08
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (68 bp):
ATGTGGTATAATATTAGTTATACACTTGGACAATATTGTTGTTATCATGCGGTGTAATACTAATT
ATC
Found at i:22152165 original size:14 final size:14
Alignment explanation
Indices: 22152128--22152158 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
22152118 CCAGAAAAGT
22152128 AAATCATTTTCCAG
1 AAATCATTTTCCAG
22152142 AAATCATTTTCCAG
1 AAATCATTTTCCAG
22152156 AAA
1 AAA
22152159 ATATTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:22153252 original size:23 final size:23
Alignment explanation
Indices: 22153222--22153287 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 23
22153212 GCTTTACCGA
22153222 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
22153245 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
* * *
22153267 T-AGACATTTTATGTATCGTAT
1 TCAGGCACTTTATGTGTCGTAT
22153288 ACTGATCAGG
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
21 12 0.36
22 4 0.12
23 17 0.52
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:22159259 original size:17 final size:18
Alignment explanation
Indices: 22159201--22159260 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 18
22159191 TTTAATATAC
22159201 AATATATAATAACAA-AAA
1 AATATATAA-AACAATAAA
* *
22159219 AAT-TACAAAAGAATAATA
1 AATATATAAAACAATAA-A
*
22159237 ATTATATAAAA-AATAAA
1 AATATATAAAACAATAAA
22159254 AATATAT
1 AATATAT
22159261 TGGTTTTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 4 0.12
17 13 0.38
18 11 0.32
19 6 0.18
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (18 bp):
AATATATAAAACAATAAA
Found at i:22159346 original size:15 final size:16
Alignment explanation
Indices: 22159316--22159350 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
22159306 AATTTATAAA
22159316 ATAATAAAATAAATAT
1 ATAATAAAATAAATAT
*
22159332 ATAAT-AAATATATAT
1 ATAATAAAATAAATAT
22159347 ATAA
1 ATAA
22159351 GTTTAGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAATAAAATAAATAT
Found at i:22159665 original size:3 final size:3
Alignment explanation
Indices: 22159657--22159781 Score: 62
Period size: 3 Copynumber: 40.3 Consensus size: 3
22159647 AAGTAAAAAC
* *
22159657 ATA ATA ATA ATA ATA TATA AGTA ATA AT- GTA A-A ATA ATA ATA ATTT
1 ATA ATA ATA ATA ATA -ATA A-TA ATA ATA ATA ATA ATA ATA ATA A-TA
* * * *
22159703 GTGA AAA ACA ATA TACA ATA GATA ATA ATA AT- ATAA ATA ATA TATA
1 AT-A ATA ATA ATA -ATA ATA -ATA ATA ATA ATA AT-A ATA ATA -ATA
* *
22159749 ATA A-A ATA ATT ATA ATA TATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA A
22159782 GGTTAAAAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
2 9 0.10
3 64 0.69
4 20 0.22
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22159695 original size:30 final size:29
Alignment explanation
Indices: 22159659--22159777 Score: 102
Period size: 30 Copynumber: 4.1 Consensus size: 29
22159649 GTAAAAACAT
*
22159659 AATAATAATAATATATAAGTAATAATGTAA
1 AATAATAATAATATATAA-TAATAATATAA
* * * * *
22159689 AATAATAATAATTTGTGAAAAACAATATAC
1 AATAATAATAATATAT-AATAATAATATAA
*
22159719 AATAGATAATAATA-AT-ATAAATAATATAT
1 AATA-ATAATAATATATAAT-AATAATATAA
22159748 AATAA-AATAAT-TATAATATATAATATAA
1 AATAATAATAATATATAATA-ATAATATAA
22159776 AA
1 AA
22159778 ATAAGGTTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
27 9 0.13
28 14 0.20
29 12 0.17
30 26 0.37
31 10 0.14
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (29 bp):
AATAATAATAATATATAATAATAATATAA
Found at i:22159751 original size:7 final size:7
Alignment explanation
Indices: 22159712--22159774 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
22159702 TGTGAAAAAC
*
22159712 AATATAC
1 AATATAT
*
22159719 AATAGAT
1 AATATAT
22159726 AATA-AT
1 AATATAT
22159732 AATATAAAT
1 AATAT--AT
22159741 AATATAT
1 AATATAT
*
22159748 AATAAAAT
1 AAT-ATAT
22159756 AAT-TAT
1 AATATAT
22159762 AATATAT
1 AATATAT
22159769 AATATA
1 AATATA
22159775 AAAATAAGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 11 0.23
7 23 0.49
8 6 0.13
9 7 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (7 bp):
AATATAT
Found at i:22161284 original size:13 final size:13
Alignment explanation
Indices: 22161266--22161294 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22161256 TAACATATTA
22161266 TTTCATTTACTAT
1 TTTCATTTACTAT
22161279 TTTCATTTACTAT
1 TTTCATTTACTAT
22161292 TTT
1 TTT
22161295 AACCTTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTCATTTACTAT
Found at i:22164657 original size:3 final size:3
Alignment explanation
Indices: 22164649--22164674 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22164639 TCCTCAAATC
22164649 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
22164675 ATCTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22167206 original size:33 final size:33
Alignment explanation
Indices: 22167168--22167235 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
22167158 TCTATGATTC
22167168 ATAATAAATAAATAAATAAATCTAATGCAGGCT
1 ATAATAAATAAATAAATAAATCTAATGCAGGCT
22167201 ATAATAAATAAATAAATAAATCTAATGCAGGCT
1 ATAATAAATAAATAAATAAATCTAATGCAGGCT
22167234 AT
1 AT
22167236 CTTCTATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.28
Consensus pattern (33 bp):
ATAATAAATAAATAAATAAATCTAATGCAGGCT
Found at i:22180136 original size:12 final size:12
Alignment explanation
Indices: 22180119--22180148 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
22180109 GAGGATGACC
22180119 AAAAGAAGAAAA
1 AAAAGAAGAAAA
22180131 AAAAGAAGAAAA
1 AAAAGAAGAAAA
22180143 ACAAAG
1 A-AAAG
22180149 CTGTTACAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAGAAGAAAA
Found at i:22191140 original size:18 final size:18
Alignment explanation
Indices: 22191119--22191158 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
22191109 GAAATATTTA
*
22191119 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
22191137 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
22191155 TTTT
1 TTTT
22191159 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:22192013 original size:39 final size:40
Alignment explanation
Indices: 22191933--22192014 Score: 132
Period size: 39 Copynumber: 2.1 Consensus size: 40
22191923 TTCATGTACA
*
22191933 CAAGAATTCATGCACATAAGTTGTCCGGGTAAAGTATGTG
1 CAAGAATTCATGCACATAAGTTGTCCGGGTAAAGTACGTG
22191973 CAAGAA-TCTATGCACATAAGTT-TCCGGGTAAAGTACGTG
1 CAAGAATTC-ATGCACATAAGTTGTCCGGGTAAAGTACGTG
22192012 CAA
1 CAA
22192015 CTGAAGATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
39 21 0.52
40 19 0.47
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAGAATTCATGCACATAAGTTGTCCGGGTAAAGTACGTG
Found at i:22199274 original size:63 final size:63
Alignment explanation
Indices: 22199204--22199327 Score: 194
Period size: 63 Copynumber: 2.0 Consensus size: 63
22199194 TGTGGATAGC
* * * *
22199204 GATGAAAAACCAACGATGGGCTTTATTTATGAGGCTGTTGATAGGGCTAAACGAGCAATTCGT
1 GATGAAAAACCAACAATGGGCTTTATTTATGAAGCTGTTGATAGAGCTAAACAAGCAATTCGT
* *
22199267 GATGAAAAACCAATAATGGGTTTTATTTATGAAGCTGTTGATAGAGCTAAACAAGCAATTC
1 GATGAAAAACCAACAATGGGCTTTATTTATGAAGCTGTTGATAGAGCTAAACAAGCAATTC
22199328 AACAATAGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (63 bp):
GATGAAAAACCAACAATGGGCTTTATTTATGAAGCTGTTGATAGAGCTAAACAAGCAATTCGT
Found at i:22201887 original size:9 final size:8
Alignment explanation
Indices: 22201862--22201895 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
22201852 GAAGAAGACG
22201862 AAAAAT-A
1 AAAAATAA
22201869 AAAAATAA
1 AAAAATAA
22201877 AAAAATAA
1 AAAAATAA
*
22201885 AAAAACAA
1 AAAAATAA
22201893 AAA
1 AAA
22201896 CACCATGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.09
Consensus pattern (8 bp):
AAAAATAA
Found at i:22203110 original size:33 final size:33
Alignment explanation
Indices: 22203065--22203129 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
22203055 CCTTCCCTTT
* *
22203065 TCCATAAGGTAGAAAGCTGGTTTTTGTCATTTC
1 TCCATAAAGTAGAAAGCTGGGTTTTGTCATTTC
*
22203098 TCCATAAAGTAGAAAGTTGGGTTTTGTCATTT
1 TCCATAAAGTAGAAAGCTGGGTTTTGTCATTT
22203130 GGTAGGGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (33 bp):
TCCATAAAGTAGAAAGCTGGGTTTTGTCATTTC
Found at i:22214158 original size:29 final size:30
Alignment explanation
Indices: 22214098--22214159 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
22214088 ATTTATTTTA
*
22214098 TTGTTAATTTTCTTATTATTTTAAATGTAT
1 TTGTTAATTTTCTTATTATTTTAAATGCAT
22214128 TTGTTAATTTT-TTATTATTTTAGAA-GCAT
1 TTGTTAATTTTCTTATTATTTTA-AATGCAT
22214157 TTG
1 TTG
22214160 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAATGCAT
Found at i:22215041 original size:9 final size:9
Alignment explanation
Indices: 22214993--22215044 Score: 52
Period size: 10 Copynumber: 5.6 Consensus size: 9
22214983 ATGTATATAT
22214993 TAAAAATTA
1 TAAAAATTA
*
22215002 -AAAAAATA
1 TAAAAATTA
*
22215010 TTAAAATTTTA
1 -TAAAA-ATTA
22215021 TAAAACATTA
1 TAAAA-ATTA
22215031 TAAAAATTA
1 TAAAAATTA
22215040 TAAAA
1 TAAAA
22215045 GGAGTGAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
8 7 0.20
9 9 0.26
10 17 0.49
11 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAAATTA
Found at i:22218388 original size:43 final size:43
Alignment explanation
Indices: 22218327--22218413 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
22218317 ATACTTTGAT
22218327 ATTGTGCTATGTTATCACCTAAAAAATTATAAATATTTCTATA
1 ATTGTGCTATGTTATCACCTAAAAAATTATAAATATTTCTATA
22218370 ATTGTGCTATGTTATCACCTAAAAAATTATAAATATTTCTATA
1 ATTGTGCTATGTTATCACCTAAAAAATTATAAATATTTCTATA
22218413 A
1 A
22218414 AATTTAAGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Consensus pattern (43 bp):
ATTGTGCTATGTTATCACCTAAAAAATTATAAATATTTCTATA
Found at i:22236135 original size:44 final size:43
Alignment explanation
Indices: 22236029--22236596 Score: 250
Period size: 43 Copynumber: 13.2 Consensus size: 43
22236019 TGATTTCCAG
* * ** *
22236029 CTGTTACCCTACTACTTAGGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCT-TCATCTTCGA-T
* *
22236072 CTATTACCCTACTGCTTAGGGGGTTAAGGCCATTCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACC-TTCATCTTCGAT
* * * * *
22236116 CTGTTTCCCTACTGCTTAGGGCGTTAAGATCTGTAAT-TT-GGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCT-TCATCTTCGAT
* ** ** *
22236158 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGGAAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGA-T
* * * *
22236201 CTGTTACACTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GACCTTCATCTTCGAT
* * * ** *
22236245 CTGCTT-CCCTACTGCTTAGGGAGCTAAGATCTGT-AAATTC-AGG
1 CTG-TTACCCTACTGCTTAGGGGGTTAAGACCT-TCATCTTCGA-T
* *
22236288 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GACCTTCATCTTCGAT
* * * * * ** *
22236332 CTGTTTCCCTACTGCTTAGGGAGCTAAGA-TTTGTAAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCTT-CATCTTCGA-T
** *
22236375 CTGTTACCCTACTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GACCTTCATCTTCGAT
* * * * * * *
22236419 CTGCT-CCACTACTGCTTAGGGAGATAAGATCTGT-A-ATTCAAC
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGACCT-TCATCTTCGAT
* ** * ** * *
22236461 CTATTACCCTACTATTTA-GGGTTTAAGGTTCTTCGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GACCTTCATCTTCGAT
* ** * * * * * *
22236504 CTGCT-CCACTTTTGCTTAGGGAGATAAGATCTACA-ATTCGGT
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGACCTTCATCTTCGAT
* **
22236546 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTTGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-CCTTCATCTTCGAT
22236590 CTGTTAC
1 CTGTTAC
22236597 ACCATTCTTT
Statistics
Matches: 376, Mismatches: 117, Indels: 63
0.68 0.21 0.11
Matches are distributed among these distances:
41 7 0.02
42 85 0.23
43 142 0.38
44 134 0.36
45 8 0.02
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGAT
Found at i:22236259 original size:129 final size:130
Alignment explanation
Indices: 22236028--22236315 Score: 454
Period size: 129 Copynumber: 2.2 Consensus size: 130
22236018 TTGATTTCCA
* * *
22236028 GCTGTTACCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGG
1 GCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTATTACACTACTGCTTAGGG
* * * *
22236093 GGTTAAGGCCATTCATCTTCGATCTGTTTCCCTACTGCTTAGGGCGTTAAGATCTGT-AATT-TG
66 GGTTAAGGCCATTCATCTTCGATCTGCTTCCCTACTGCTTAGGGAGCTAAGATCTGTAAATTCAG
*
22236156 GTCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACACTACTGCTTAGG
1 G-CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTATTACACTACTGCTTAGG
* * *
22236221 GGTTTAAGGCCCTTCGTCTTCGATCTGCTTCCCTACTGCTTAGGGAGCTAAGATCTGTAAATTCA
65 GGGTTAAGGCCATTCATCTTCGATCTGCTTCCCTACTGCTTAGGGAGCTAAGATCTGTAAATTCA
22236286 G
130 G
22236287 GCTGTTACCCTACTGCTTAGGGGGTTAAG
1 GCTGTTACCCTACTGCTTAGGGGGTTAAG
22236316 GCCCTTCGTC
Statistics
Matches: 146, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
128 1 0.01
129 111 0.76
130 32 0.22
131 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (130 bp):
GCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTATTACACTACTGCTTAGGG
GGTTAAGGCCATTCATCTTCGATCTGCTTCCCTACTGCTTAGGGAGCTAAGATCTGTAAATTCAG
Found at i:22236276 original size:87 final size:86
Alignment explanation
Indices: 22236164--22236592 Score: 533
Period size: 87 Copynumber: 5.0 Consensus size: 86
22236154 TGGTCTGTTA
* * *
22236164 CCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACACTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGAGATAAGATCTGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
22236229 GCCCTTCGTCTTCGATCTGCTT
66 GCCCTTCGTCTTCGATCTGC-T
* * * *
22236251 CCCTACTGCTTAGGGAGCTAAGATCTGTAAATTCAGGCTGTTACCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTAGGGAGATAAGATCTGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
*
22236316 GCCCTTCGTCTTCGATCTGTTT
66 GCCCTTCGTCTTCGATCTG-CT
* * * *
22236338 CCCTACTGCTTAGGGAGCTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTAGGGAGATAAGATCTGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
**
22236403 GTTCTTCGTCTTCGATCTGCT
66 GCCCTTCGTCTTCGATCTGCT
* * * **
22236424 CCACTACTGCTTAGGGAGATAAGATCT-GTAATTCAACCTATTACCCTACTATTTA-GGGTTTAA
1 CC-CTACTGCTTAGGGAGATAAGATCTGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
** *
22236487 GGTTCTTCGTCTTTGATCTGCT
65 GGCCCTTCGTCTTCGATCTGCT
** * *
22236509 CCACTTTTGCTTAGGGAGATAAGATCT--ACAATTCGGTCTGTTACCCTACTGCTTAGGGGTTTA
1 CC-CTACTGCTTAGGGAGATAAGATCTGGA-AATTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
* *
22236572 AGACCCTTTGTCTTCGATCTG
64 AGGCCCTTCGTCTTCGATCTG
22236593 TTACACCATT
Statistics
Matches: 302, Mismatches: 36, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
85 73 0.24
86 48 0.16
87 181 0.60
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (86 bp):
CCCTACTGCTTAGGGAGATAAGATCTGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
GCCCTTCGTCTTCGATCTGCT
Found at i:22236473 original size:216 final size:217
Alignment explanation
Indices: 22236032--22236481 Score: 538
Period size: 216 Copynumber: 2.1 Consensus size: 217
22236022 TTTCCAGCTG
* *
22236032 TTACCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGGTT
1 TTACCCTACTACTTAGGGAGCTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGGTT
* * ** *
22236097 AAGGCCATTCATCTTCGATCTGTTTCCCTACTGCTTAGGGCGTTAAGATCTGTAATTTGGTCTGT
66 AAGGCCATTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGCTAAGATCTGTAATTCAGCCTGT
* * *
22236162 TACCCTACTGCTTAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACACTACTGCTTAGGGGTTTA
131 TACCCTACTGCTTAGGGGGTTAAGATCTCGAAATTCAGCCTGCTACACTACTGCTTAGGGGTATA
* * * * *
22236227 AGGCCCTTCGTCTTCGATCTGC
196 AGGACCTTCGTATTCAACCTGA
* * *
22236249 TT-CCCTACTGCTTAGGGAGCTAAGATCTGTAAATTCAGGCTGTTACCCTACTGCTTAGGGGGTT
1 TTACCCTACTACTTAGGGAGCTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGGTT
* * *
22236313 AAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGAGCTAAGATTTGTAAATTCAGCCTG
66 AAGGCCATTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGCTAAGATCTGT-AATTCAGCCTG
* ** * *
22236378 TTACCCTACTGCTTAGGGGGTTAAGGTTCTTCG-TCTTC-GATCTGCTCCACTACTGCTTAGGGA
130 TTACCCTACTGCTTAGGGGGTTAA-GATC-TCGAAATTCAG-CCTGCTACACTACTGCTTAGGG-
*
22236441 G-ATAA-GATC-T-GTAATTCAACCT-A
191 GTATAAGGACCTTCGT-ATTCAACCTGA
*
22236464 TTACCCTACTATTTAGGG
1 TTACCCTACTACTTAGGG
22236482 TTTAAGGTTC
Statistics
Matches: 197, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
215 4 0.02
216 125 0.63
217 37 0.19
218 28 0.14
219 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (217 bp):
TTACCCTACTACTTAGGGAGCTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGGTT
AAGGCCATTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGCTAAGATCTGTAATTCAGCCTGT
TACCCTACTGCTTAGGGGGTTAAGATCTCGAAATTCAGCCTGCTACACTACTGCTTAGGGGTATA
AGGACCTTCGTATTCAACCTGA
Found at i:22256207 original size:47 final size:47
Alignment explanation
Indices: 22256109--22256210 Score: 134
Period size: 47 Copynumber: 2.2 Consensus size: 47
22256099 AATCGATAAG
* * * * *
22256109 TACCTATACCATGGCCCATAGGCAAATCAAGGTAACTTATCCTAGAG
1 TACCTATACCATAGCCCATAGCCAAACCAAGGTAACTCATCCTAGAA
*
22256156 TACCTATACCATAGCCCATAGCCAAACCAAGGTAACTCCTCTCT-GAA
1 TACCTATACCATAGCCCATAGCCAAACCAAGGTAACTCATC-CTAGAA
22256203 TACCTATA
1 TACCTATA
22256211 TTATGGCCTA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
47 46 0.96
48 2 0.04
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (47 bp):
TACCTATACCATAGCCCATAGCCAAACCAAGGTAACTCATCCTAGAA
Found at i:22257918 original size:33 final size:32
Alignment explanation
Indices: 22257865--22257927 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
22257855 GTTTCAATTA
22257865 GGATATAGCCTGGACTGGTAATCCTAATTGACT
1 GGATATAGCCTGGACTGGTAATCC-AATTGACT
* *
22257898 GGATTTAGCCTGGA-TAGGTAATTCAATTGA
1 GGATATAGCCTGGACT-GGTAATCCAATTGA
22257928 ACTCTATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 7 0.26
33 20 0.74
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (32 bp):
GGATATAGCCTGGACTGGTAATCCAATTGACT
Found at i:22259533 original size:20 final size:20
Alignment explanation
Indices: 22259495--22259533 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22259485 CTACACCTAG
*
22259495 GAAAAATTTTGAAATTTCTT
1 GAAAAATTTTGAAAGTTCTT
22259515 GAAAAATTTT-ATAAGTTCT
1 GAAAAATTTTGA-AAGTTCT
22259534 CGATTTAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (20 bp):
GAAAAATTTTGAAAGTTCTT
Found at i:22267869 original size:48 final size:48
Alignment explanation
Indices: 22267805--22268334 Score: 763
Period size: 48 Copynumber: 11.0 Consensus size: 48
22267795 CAACATAAAT
* * * *
22267805 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGACATATGTATAAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
22267853 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22267901 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22267949 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22267997 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22268045 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22268093 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22268141 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22268189 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
22268237 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
22268285 ATATGTATATTTGGTAAAGCCGAATGGCTAATATGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
22268333 AT
1 AT
22268335 GTGTGTATAT
Statistics
Matches: 425, Mismatches: 57, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 425 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:22267978 original size:96 final size:96
Alignment explanation
Indices: 22267805--22268334 Score: 943
Period size: 96 Copynumber: 5.5 Consensus size: 96
22267795 CAACATAAAT
* * * * * * * * *
22267805 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGACATATGTATAAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
22267870 AGCCGAATGGCTAGTGTGATATATGTATGAG
66 AGCCGAATGGCTAGTGTGATATATGTATGAG
22267901 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
1 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
22267966 AGCCGAATGGCTAGTGTGATATATGTATGAG
66 AGCCGAATGGCTAGTGTGATATATGTATGAG
22267997 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
1 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
22268062 AGCCGAATGGCTAGTGTGATATATGTATGAG
66 AGCCGAATGGCTAGTGTGATATATGTATGAG
22268093 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
1 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
22268158 AGCCGAATGGCTAGTGTGATATATGTATGAG
66 AGCCGAATGGCTAGTGTGATATATGTATGAG
22268189 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
1 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
22268254 AGCCGAATGGCTAGTGTGATATATGTATGAG
66 AGCCGAATGGCTAGTGTGATATATGTATGAG
* * * *
22268285 ATATGTATATTTGGTAAAGCCGAATGGCTAATATGAAATATGTAGGAGAT
1 ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGAT
22268335 GTGTGTATAT
Statistics
Matches: 421, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 421 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.33
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAACCGAATGGCTATTATGAAATATGTATGAGATATATATGTGTGGTAA
AGCCGAATGGCTAGTGTGATATATGTATGAG
Found at i:22268525 original size:37 final size:37
Alignment explanation
Indices: 22268475--22268577 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
22268465 GGAAATATAT
22268475 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22268512 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22268549 TCCGGGTAAGACCCGATAACTACTTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
22268578 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22271098 original size:21 final size:21
Alignment explanation
Indices: 22271073--22271112 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22271063 TGCACCTAGG
* * *
22271073 AAAAATTTTGAAATTTCTCAA
1 AAAAAATTTAAAAGTTCTCAA
22271094 AAAAAATTTAAAAGTTCTC
1 AAAAAATTTAAAAGTTCTC
22271113 GATTTAGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (21 bp):
AAAAAATTTAAAAGTTCTCAA
Found at i:22272970 original size:12 final size:12
Alignment explanation
Indices: 22272953--22272978 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22272943 TTGTTTAATA
22272953 TTCAAGAACATG
1 TTCAAGAACATG
22272965 TTCAAGAACATG
1 TTCAAGAACATG
22272977 TT
1 TT
22272979 TATTTAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (12 bp):
TTCAAGAACATG
Found at i:22274748 original size:17 final size:17
Alignment explanation
Indices: 22274728--22274761 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22274718 AGGTTTAGAT
22274728 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
22274745 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
22274762 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:22283119 original size:12 final size:13
Alignment explanation
Indices: 22283095--22283123 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
22283085 GGTCCGGCTC
22283095 ATATTACTTTTTT
1 ATATTACTTTTTT
22283108 ATATTA-TTTTTT
1 ATATTACTTTTTT
22283120 ATAT
1 ATAT
22283124 AAATTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (13 bp):
ATATTACTTTTTT
Found at i:22303613 original size:61 final size:61
Alignment explanation
Indices: 22303538--22303656 Score: 220
Period size: 61 Copynumber: 2.0 Consensus size: 61
22303528 ACTGAGTTTA
*
22303538 TGTAAACTCACATCTGTTGTCTGTTCTGTTTAGGTAATCCACAGACCTAGGTGGATTGATG
1 TGTAAACTCACATCTGTTGTCTGTTCTGTTTAGGTAATCCACAGACCTAGGCGGATTGATG
*
22303599 TGTAAACTCACATCTGTTGTCTGTTCTGTTTAGGTAATCCATAGACCTAGGCGGATTG
1 TGTAAACTCACATCTGTTGTCTGTTCTGTTTAGGTAATCCACAGACCTAGGCGGATTG
22303657 GTGTAGTAGA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (61 bp):
TGTAAACTCACATCTGTTGTCTGTTCTGTTTAGGTAATCCACAGACCTAGGCGGATTGATG
Found at i:22309079 original size:29 final size:29
Alignment explanation
Indices: 22309047--22309103 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
22309037 TTTTAATCCT
* *
22309047 TTTTAAATTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTATATATAATCTATTTA
*
22309076 TTTTAAATATTTTATATATTATCTATTT
1 TTTTAAATATTTTATATATAATCTATTT
22309104 TTACTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATCTATTTA
Found at i:22309152 original size:12 final size:12
Alignment explanation
Indices: 22309135--22309317 Score: 112
Period size: 12 Copynumber: 16.1 Consensus size: 12
22309125 TATGTAAAAA
*
22309135 ATTATTGTATAT
1 ATTATTATATAT
* *
22309147 ATTATTTTTATTT
1 ATTA-TTATATAT
22309160 ATGTATTATTTATTAT
1 AT-TATTA--TA-TAT
22309176 ATTATT-TATAT
1 ATTATTATATAT
*
22309187 TTTATTATATAT
1 ATTATTATATAT
*
22309199 TTTATT-TATAT
1 ATTATTATATAT
22309210 ATT-TTAT-TAT
1 ATTATTATATAT
22309220 A-TATTATATCAT
1 ATTATTATAT-AT
*
22309232 TTTATTATATAT
1 ATTATTATATAT
22309244 ATTATTCAT-TAT
1 ATTATT-ATATAT
22309256 ATTATT-T-T-T
1 ATTATTATATAT
22309265 ATT-TTAT-TAT
1 ATTATTATATAT
22309275 A-TATTATAT-T
1 ATTATTATATAT
22309285 ATT-TTAT-TAT
1 ATTATTATATAT
*
22309295 TTTATTAT-T-T
1 ATTATTATATAT
*
22309305 ATTATTATGTAT
1 ATTATTATATAT
22309317 A
1 A
22309318 ATTTTAAAAA
Statistics
Matches: 140, Mismatches: 10, Indels: 42
0.73 0.05 0.22
Matches are distributed among these distances:
8 2 0.01
9 9 0.06
10 35 0.25
11 25 0.18
12 37 0.26
13 20 0.14
14 2 0.01
15 6 0.04
16 4 0.03
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.66
Consensus pattern (12 bp):
ATTATTATATAT
Found at i:22309167 original size:29 final size:27
Alignment explanation
Indices: 22309135--22309312 Score: 124
Period size: 29 Copynumber: 6.6 Consensus size: 27
22309125 TATGTAAAAA
22309135 ATTATTGTATATATTATTTTTATTTATGT
1 ATTATT-TATATATTATTTTTATTTAT-T
*
22309164 ATTATTTATTATATTATTTATA-TT-TT
1 ATTATTTA-TATATTATTTTTATTTATT
* *
22309190 ATTA--TATATTTTATTTATATATT-TT
1 ATTATTTATATATTATTTTTAT-TTATT
* *
22309215 ATTATATATTATATCA-TTTTATTATATAT
1 ATTATTTA-TATATTATTTTTATT-TAT-T
*
22309244 ATTATTCATTATATTATTTTTA-TT-TT
1 ATTATTTA-TATATTATTTTTATTTATT
* *
22309270 ATTATATATTATATTA-TTTTATTATTTT
1 ATTATTTA-TATATTATTTTTATT-TATT
22309298 ATTATTTAT-TATTAT
1 ATTATTTATATATTAT
22309313 GTATAATTTT
Statistics
Matches: 124, Mismatches: 11, Indels: 30
0.75 0.07 0.18
Matches are distributed among these distances:
23 12 0.10
24 2 0.02
25 13 0.10
26 27 0.22
27 12 0.10
28 20 0.16
29 33 0.27
30 5 0.04
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (27 bp):
ATTATTTATATATTATTTTTATTTATT
Found at i:22309180 original size:5 final size:5
Alignment explanation
Indices: 22309144--22309312 Score: 85
Period size: 5 Copynumber: 34.6 Consensus size: 5
22309134 AATTATTGTA
* *
22309144 TATAT TAT-T TTTAT T-TAT GTATTAT T-TAT TATAT TAT-T TATAT TTTAT
1 TATAT TATAT TATAT TATAT -TA-TAT TATAT TATAT TATAT TATAT TATAT
* * *
22309192 TATA- TATTT TAT-T TATA- TATTT TAT-T ATATAT TATAT CAT-T T-TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT
* *
22309237 TATA- TATAT TATTCAT TATAT TAT-T TTTAT TTTATT ATATAT TATAT
1 TATAT TATAT TA-T-AT TATAT TATAT TATAT TATA-T -TATAT TATAT
* *
22309284 TATTT TATTAT TTTAT TAT-T TATTAT TAT
1 TATAT TA-TAT TATAT TATAT TA-TAT TAT
22309313 GTATAATTTT
Statistics
Matches: 129, Mismatches: 13, Indels: 44
0.69 0.07 0.24
Matches are distributed among these distances:
3 1 0.01
4 38 0.29
5 68 0.53
6 12 0.09
7 10 0.08
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (5 bp):
TATAT
Found at i:22309184 original size:23 final size:23
Alignment explanation
Indices: 22309154--22309309 Score: 125
Period size: 23 Copynumber: 7.0 Consensus size: 23
22309144 TATATTATTT
*
22309154 TTATTTATGTATTATTTATTATA
1 TTATTTATATATTATTTATTATA
* *
22309177 TTATTTATATTTTA-TTATATATT
1 TTATTTATATATTATTTAT-TATA
22309200 TTATTTATATA-T-TTTATTATA
1 TTATTTATATATTATTTATTATA
*
22309221 -TA-TTATATCATTTTATTATATATA
1 TTATTTATAT-ATTAT-TTAT-TATA
* *
22309245 TTATTCATTATATTATTT-TTATT
1 TTATTTA-TATATTATTTATTATA
*
22309268 TTA-TTATATATTATATTATTTTA
1 TTATTTATATATTAT-TTATTATA
22309291 TTA-TT-T-TATTATTTATTAT
1 TTATTTATATATTATTTATTAT
22309310 TATGTATAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 27
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.06
20 9 0.08
21 18 0.17
22 15 0.14
23 43 0.39
24 5 0.05
25 4 0.04
26 6 0.06
27 3 0.03
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (23 bp):
TTATTTATATATTATTTATTATA
Found at i:22309247 original size:80 final size:82
Alignment explanation
Indices: 22309152--22309309 Score: 234
Period size: 80 Copynumber: 2.0 Consensus size: 82
22309142 TATATATTAT
* *
22309152 TTTTATTTATGTATTATTTATTATATTATTTATATTTTATTATATA-T-T-TTA-TTTATATATT
1 TTTTATTTATATATTATTCATTATATTATTTATATTTTATTATATATTATATTATTTTAT-TATT
22309213 TTATTATATATTATATCA
65 TTATTATATATTATATCA
*
22309231 TTTTATTATATATATTATTCATTATATTATTTTTATTTTATTATATATTATATTATTTTATTATT
1 TTTTATT-TATATATTATTCATTATATTATTTATATTTTATTATATATTATATTATTTTATTATT
*
22309296 TTATTATTTATTAT
65 TTATTATATATTAT
22309310 TATGTATAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
79 7 0.10
80 36 0.51
81 1 0.01
82 1 0.01
83 20 0.29
84 5 0.07
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (82 bp):
TTTTATTTATATATTATTCATTATATTATTTATATTTTATTATATATTATATTATTTTATTATTT
TATTATATATTATATCA
Found at i:22309924 original size:66 final size:66
Alignment explanation
Indices: 22309810--22309938 Score: 149
Period size: 66 Copynumber: 2.0 Consensus size: 66
22309800 ATATTTTATG
* * *
22309810 TTTATTATTTTCTATGTTTATTTGCACGACATGTAAATGTATATATTATGTAGTGTA-TATTGTT
1 TTTATTATTTGCTATGTTTATTCGCACGACATGTAAATGTATATATTATATAGTGTAGTATTGTT
22309874 A
66 A
* *
22309875 TTTATTATTTGCTATGTTATATTCGCATGA-A-GTATTAATGTATGA-ATTATATAGTTTAGTAT
1 TTTATTATTTGCTATGTT-TATTCGCACGACATGTA--AATGTAT-ATATTATATAGTGTAGTAT
22309937 TG
62 TG
22309939 ATATCTTGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
64 3 0.06
65 18 0.33
66 27 0.50
67 6 0.11
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (66 bp):
TTTATTATTTGCTATGTTTATTCGCACGACATGTAAATGTATATATTATATAGTGTAGTATTGTT
A
Found at i:22321495 original size:90 final size:90
Alignment explanation
Indices: 22321373--22322142 Score: 1051
Period size: 90 Copynumber: 8.5 Consensus size: 90
22321363 CGGGGAACAA
* * * * * ** * *
22321373 ATCGAAGAAG-CAGATTTGGCATTTCTATATTAGACGAGGAATAGATCGAAGATAGCAAATCTAA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
*
22321437 CATTCGTGTGTTTACATCGAAACAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
22321462 ATCGAAGATGACAAATTTGGCGTCTCTGTATTAGACGGGGAGCAGATTAAGAAGATAGCAGATCT
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA-T-CGAAGATAGCAGATCT
22321527 GACATTCGTGTGTTTACATCGAAGCAG
64 GACATTCGTGTGTTTACATCGAAGCAG
* * * *
22321554 ATCGAAGATGACAGATTTGGCGTCCCTATATTAGACGGGGAGCAGATTGAAGATAGAAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
22321619 CATTCGTGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
22321644 ATTGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGTAGTAGATCGAAGATAGCAGATCTG
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGG-AGCAGATCGAAGATAGCAGATCTG
22321709 ACATTCGTGTGTTTACATCGAAGCAG
65 ACATTCGTGTGTTTACATCGAAGCAG
*
22321735 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
*
22321800 CATTCGTGTGTTTATATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * *
22321825 ATCGAAGATGACAGATTTGGTGTCTCTGTATTAGACGGGGTGCAGATCAAAGATAGCAGATGTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * *
22321890 CATTTGTGTGTTTACATCAAAGTAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * *
22321915 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAAACGGGGAGCAGATCGAAGATAGCAGATCTTA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * * *
22321980 TATTTGTTTGTTTACATCAAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * * * * *
22322005 ATCAAAAATGATAGATTTAGCATTTCTGTATTAGACGGGGAGCA-AGTCGCAGATAGCAGATCTG
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA-TCGAAGATAGCAGATCTG
* * * *
22322069 ACATTCATGTGTTTATATTGAAGTAG
65 ACATTCGTGTGTTTACATCGAAGCAG
* *
22322095 ATCAAAGAT-AGCAGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATC
1 ATCGAAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC
22322143 AAGTATATTA
Statistics
Matches: 608, Mismatches: 66, Indels: 13
0.89 0.10 0.02
Matches are distributed among these distances:
89 11 0.02
90 426 0.70
91 89 0.15
92 82 0.13
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (90 bp):
ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
CATTCGTGTGTTTACATCGAAGCAG
Found at i:22323610 original size:29 final size:30
Alignment explanation
Indices: 22323557--22323614 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
22323547 TTTTAATCCT
*
22323557 TTTTAAATTTTTTTATATATAATTTATTTA
1 TTTTAAATTATTTTATATATAATTTATTTA
*
22323587 TTTTAAA-TATTTTATATATTATTTATTT
1 TTTTAAATTATTTTATATATAATTTATTT
22323615 TTACTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (30 bp):
TTTTAAATTATTTTATATATAATTTATTTA
Done.