Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 78 of 310
Found at i:24926161 original size:46 final size:46
Alignment explanation
Indices: 24926111--24926283 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
24926101 TGGTTGAGCA
24926111 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
24926157 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
24926202 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
24926250 -CTGGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
24926284 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 58 0.55
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:24926267 original size:93 final size:93
Alignment explanation
Indices: 24926108--24926278 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
24926098 GGATGGTTGA
* * *
24926108 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACGTCCGAACTCGTTGAGT
24926173 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
24926201 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACG-CTGGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACGTC-CGAACTCGTTGAG
24926265 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
24926279 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:24928839 original size:14 final size:14
Alignment explanation
Indices: 24928820--24928849 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
24928810 AATGACGAAT
24928820 GATAAGGGATGAGG
1 GATAAGGGATGAGG
24928834 GATAAGGGATGAGG
1 GATAAGGGATGAGG
24928848 GA
1 GA
24928850 ATTAAGGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.50, T:0.13
Consensus pattern (14 bp):
GATAAGGGATGAGG
Found at i:24930497 original size:46 final size:45
Alignment explanation
Indices: 24930426--24930572 Score: 147
Period size: 46 Copynumber: 3.2 Consensus size: 45
24930416 TATGTGCGCT
24930426 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCAT-GGCCACATTATGAAAGCC
* * *
24930472 AGTGTAAGACACGTCTGGGATATGCAT--CAACATTGA-GACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATGGCCACATT-ATGA--A-AGCC
* * *
24930518 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TGGCCAC-A-TTATGAAAGCC
24930566 AGTGTAA
1 AGTGTAA
24930573 AACCTATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
43 8 0.10
44 1 0.01
45 1 0.01
46 53 0.65
47 1 0.01
48 11 0.13
49 3 0.04
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATGGCCACATTATGAAAGCC
Found at i:24930613 original size:92 final size:93
Alignment explanation
Indices: 24930426--24930738 Score: 289
Period size: 92 Copynumber: 3.3 Consensus size: 93
24930416 TATGTGCGCT
* *
24930426 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAAGCCAGTGTAAGACAC-GTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAATATGAAAGCCAGTGTAAGAC-CTGTCTG
*
24930489 GGATAT-GCATCAACATTGAGACGAGAGCC
65 GGACATGGCATCAACATT-AGACGAGAGCC
* * * * *
24930518 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAGCCAGTGTAAAACCTATTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-ATATGAAAGCCAGTGTAAGACCTGTCTG
* * *
24930583 GGACATGGCATCAGC-TT-GAC-ATGTGTC
65 GGACATGGCATCAACATTAGACGA-GAGCC
* * * * * *
24930610 AGTGTATGACCTATCTGGGACATGGCATCGGCGTTGATATATGAAAGTCAGTGTAAGACCTGTCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-ATATGAAAGCCAGTGTAAGACCTGTCT
* * *
24930675 GGGACATGGCATCGAC-TTAGATGTGTGAGCC
64 GGGACATGGCATCAACATTAGA--CGAGAGCC
* *
24930706 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
24930739 ATCGTACCCT
Statistics
Matches: 176, Mismatches: 34, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
91 1 0.01
92 58 0.33
93 50 0.28
94 30 0.17
95 7 0.04
96 11 0.06
97 19 0.11
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAATATGAAAGCCAGTGTAAGACCTGTCTGG
GACATGGCATCAACATTAGACGAGAGCC
Found at i:24930670 original size:49 final size:46
Alignment explanation
Indices: 24930517--24930738 Score: 164
Period size: 48 Copynumber: 4.7 Consensus size: 46
24930507 AGACGAGAGC
* * * * *
24930517 CAGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGATATGCAAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGG-CTTGA-ATATG-AAGT
* * * * *
24930565 CAGTGTAAAACCTATTTGGGACATGGCATCAGCTTG-ACATG-TGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGGCTTGAATATGAAGT
*
24930609 CAGTGTATGACCTATCTGGGACATGGCATCGGCGTTGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGGC-TTGA-ATATG-AAGT
* * * * *
24930658 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTT-AGATGTGTGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGGCTTGA-ATATG-AAGT
* * *
24930705 CAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 CAGTGTAAGACC-TATCTGGGACATGGCATCGGC
24930739 ATCGTACCCT
Statistics
Matches: 140, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
44 30 0.21
45 3 0.02
46 4 0.03
47 23 0.16
48 43 0.31
49 37 0.26
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (46 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGGCTTGAATATGAAGT
Found at i:24934075 original size:24 final size:24
Alignment explanation
Indices: 24934048--24934145 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
24934038 AAGGCTGTCA
24934048 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
24934072 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
24934096 GGAGAGGATTTAGGAACTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
24934120 GGAGAAGATTTAGGAGCTGATTAAG
1 GGAGAAGATTTAGGAGCTGA-TAAG
24934145 G
1 G
24934146 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 63 0.94
25 4 0.06
ACGTcount: A:0.37, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:24934141 original size:12 final size:12
Alignment explanation
Indices: 24934054--24934148 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
24934044 GTCAGGAGAA
*
24934054 GATTTAGGAGCT
1 GATTAAGGAGCT
**
24934066 GA-TAAGGGAGAG
1 GATTAA-GGAGCT
*
24934078 GATTTAGGAGCT
1 GATTAAGGAGCT
**
24934090 GA-TAAGGGAGAG
1 GATTAA-GGAGCT
* *
24934102 GATTTAGGAACT
1 GATTAAGGAGCT
* **
24934114 GATAAAGGAGAA
1 GATTAAGGAGCT
*
24934126 GATTTAGGAGCT
1 GATTAAGGAGCT
24934138 GATTAAGGAGC
1 GATTAAGGAGC
24934149 AGGAGTTGGC
Statistics
Matches: 56, Mismatches: 23, Indels: 8
0.64 0.26 0.09
Matches are distributed among these distances:
11 4 0.07
12 48 0.86
13 4 0.07
ACGTcount: A:0.36, C:0.05, G:0.37, T:0.22
Consensus pattern (12 bp):
GATTAAGGAGCT
Found at i:24935841 original size:33 final size:34
Alignment explanation
Indices: 24935764--24935844 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
24935754 TATGGGCCAT
* *
24935764 ACTGTTATCTGAATAAGGGGCTAAGGCCTAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
24935798 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
24935831 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
24935845 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:24942399 original size:29 final size:29
Alignment explanation
Indices: 24942357--24942412 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
24942347 TGCCATAGTG
*
24942357 TCTTCCAACTATGGTCTTATTCATTTCTA
1 TCTTCCAACCATGGTCTTATTCATTTCTA
*
24942386 TCTTTCAACCATGGTCTTATTCATTTC
1 TCTTCCAACCATGGTCTTATTCATTTC
24942413 CCAACATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.20, C:0.25, G:0.07, T:0.48
Consensus pattern (29 bp):
TCTTCCAACCATGGTCTTATTCATTTCTA
Found at i:24942437 original size:46 final size:46
Alignment explanation
Indices: 24942384--24942493 Score: 184
Period size: 46 Copynumber: 2.4 Consensus size: 46
24942374 TATTCATTTC
24942384 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
***
24942430 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
*
24942476 TATCTTTCAACCGTGGTC
1 TATCTTTCAACCATGGTC
24942494 ATATCTGAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
Found at i:24942703 original size:33 final size:33
Alignment explanation
Indices: 24942554--24942707 Score: 120
Period size: 33 Copynumber: 4.7 Consensus size: 33
24942544 TCTAGTATGA
* * *
24942554 TGCCATAGTCCAACTATGGTCTTACACATGTAT
1 TGCCATAGCCCAGCTATGGTCTTACACATATAT
* * *
24942587 TG--ATGGCCCAGCTATGGTCTTACAC-TCGTAG
1 TGCCATAGCCCAGCTATGGTCTTACACAT-ATAT
* * * * *
24942618 TGCCAAATCCCAGATATGGTCTTATCA-TTAGGAT
1 TGCCATAGCCCAGCTATGGTCTTA-CACATA-TAT
*
24942652 T-CCATAGCCTAGCTATGGTCTTACACATATAT
1 TGCCATAGCCCAGCTATGGTCTTACACATATAT
* *
24942684 TGCCATGGCCCAGCCATGGTCTTA
1 TGCCATAGCCCAGCTATGGTCTTA
24942708 TCCGTCAATT
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
30 1 0.01
31 25 0.27
32 5 0.05
33 57 0.61
34 5 0.05
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (33 bp):
TGCCATAGCCCAGCTATGGTCTTACACATATAT
Found at i:24961358 original size:39 final size:40
Alignment explanation
Indices: 24961257--24961358 Score: 163
Period size: 40 Copynumber: 2.6 Consensus size: 40
24961247 TATTCGGATG
*
24961257 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
24961297 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
*
24961337 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
24961359 TACTTGGGTT
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
39 15 0.25
40 42 0.71
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:24979650 original size:11 final size:11
Alignment explanation
Indices: 24979634--24979681 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
24979624 CTTTATATAC
24979634 TAATAAAATAA
1 TAATAAAATAA
*
24979645 TAATAAAATATCT
1 TAATAAAATA--A
* *
24979658 TATTAAAATAT
1 TAATAAAATAA
24979669 TAATAAAATAA
1 TAATAAAATAA
24979680 TA
1 TA
24979682 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:24981323 original size:17 final size:17
Alignment explanation
Indices: 24981301--24981334 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24981291 ACATATCATG
24981301 ATAAACTCCCGGTTGAA
1 ATAAACTCCCGGTTGAA
*
24981318 ATAAACTCCTGGTTGAA
1 ATAAACTCCCGGTTGAA
24981335 CCTTAGGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (17 bp):
ATAAACTCCCGGTTGAA
Found at i:24981478 original size:47 final size:46
Alignment explanation
Indices: 24981388--24981509 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 46
24981378 TATGTGTGCT
* * *
24981388 AGTGTAAGACATGTCTGGGGCATGCATCAGCCAAATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAAATGACGAGAGCC
* *
24981434 AGTGTAAGACATGTTTGGGACAATGCATCAG-CATTAA-GACGAGAGCT
1 AGTGTAAGACATGTCTGGGAC-ATGCATCAGCCA--AATGACGAGAGCC
* *
24981481 AGTGTAAGACATGTCTGAGATATGCATCA
1 AGTGTAAGACATGTCTGGGACATGCATCA
24981510 ACCTCAAGAT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 29 0.45
47 34 0.52
48 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCAAATGACGAGAGCC
Found at i:24981633 original size:93 final size:94
Alignment explanation
Indices: 24981525--24981750 Score: 287
Period size: 98 Copynumber: 2.4 Consensus size: 94
24981515 AAGATATGCA
* *
24981525 AGCCAGTGTAAGACCTATTTGGGACATGGCATCGGCTTG-ACAT-G-TGTCAGTGTAAGACCTAT
1 AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTGAACATGGAAGTCAGTGTAAGACCTAT
* *
24981587 CTGGGACATGGCATCGACACCGATAGATGAG
66 CTAGGACATGGCATCGACACAGAT-G-TGAG
* *
24981618 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATATATGGAAGTCAGTGTAAGACCT
1 AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGG-CTTGA-ACATGGAAGTCAGTGTAAGACCT
** *
24981683 ATCTAGGACATGGCATCGACTTAGATGTGTG
64 ATCTAGGACATGGCATCGACACAGATGTGAG
* *
24981714 AGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGC
1 AGCCAGTGTAAGACC-TGTTTGGGACATGGCATCGGC
24981751 ATCGTACCCT
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
93 33 0.29
94 4 0.03
96 22 0.19
97 19 0.17
98 37 0.32
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTGAACATGGAAGTCAGTGTAAGACCTAT
CTAGGACATGGCATCGACACAGATGTGAG
Found at i:24981639 original size:49 final size:47
Alignment explanation
Indices: 24981525--24981728 Score: 184
Period size: 49 Copynumber: 4.3 Consensus size: 47
24981515 AAGATATGCA
* * ** *
24981525 AGCCAGTGTAAGACCTATTTGGGACATGGCATCGGCTTG--ACAT-G
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCAGATAGATGG
* * *
24981569 TGTCAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAG
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGAC-CAGATAGATG-G
* * * *
24981618 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATATATGG
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACC-AGATAGATGG
* * *
24981666 AAGTCAGTGTAAGACCTATCTAGGACATGGCATCGACTTAGAT-G-TGTG
1 -AGCCAGTGTAAGACCTATCTGGGACATGGCATCGAC-CAGATAGATG-G
24981714 AGCCAGTGTAAGACC
1 AGCCAGTGTAAGACC
24981729 ATGTTTGGAA
Statistics
Matches: 130, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
44 32 0.25
45 1 0.01
47 19 0.15
48 3 0.02
49 75 0.58
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCAGATAGATGG
Found at i:24987428 original size:26 final size:26
Alignment explanation
Indices: 24987399--24987506 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
24987389 TGGTACAAAT
24987399 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24987425 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24987451 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24987477 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24987503 TGAT
1 TGAT
24987507 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24994523 original size:26 final size:26
Alignment explanation
Indices: 24994494--24994601 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
24994484 TGGTACAAAT
24994494 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24994520 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24994546 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24994572 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24994598 TGAT
1 TGAT
24994602 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24996134 original size:26 final size:25
Alignment explanation
Indices: 24996082--24996134 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
24996072 TTTACAGTTT
24996082 TACCCCTAGTAGGTAAATTACCGAAA
1 TACCCCTAG-AGGTAAATTACCGAAA
*
24996108 TACCCCTAG-GGTTAAATTCACCTAAA
1 TACCCCTAGAGG-TAAATT-ACCGAAA
24996134 T
1 T
24996135 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGGTAAATTACCGAAA
Found at i:25000045 original size:11 final size:11
Alignment explanation
Indices: 25000029--25000062 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
25000019 TCCACGGTTT
25000029 AGAAATTTTTG
1 AGAAATTTTTG
25000040 AGAAATTTTTG
1 AGAAATTTTTG
*
25000051 AGAAATCTTTG
1 AGAAATTTTTG
25000062 A
1 A
25000063 TAAACCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (11 bp):
AGAAATTTTTG
Found at i:25000072 original size:22 final size:22
Alignment explanation
Indices: 25000029--25000072 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
25000019 TCCACGGTTT
* **
25000029 AGAAATTTTTGAGAAATTTTTG
1 AGAAATCTTTGAGAAACCTTTG
*
25000051 AGAAATCTTTGATAAACCTTTG
1 AGAAATCTTTGAGAAACCTTTG
25000073 GTAAAAACTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (22 bp):
AGAAATCTTTGAGAAACCTTTG
Found at i:25003824 original size:12 final size:12
Alignment explanation
Indices: 25003807--25003831 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25003797 TAGTTAATTC
25003807 TAATTTTCTTTT
1 TAATTTTCTTTT
25003819 TAATTTTCTTTT
1 TAATTTTCTTTT
25003831 T
1 T
25003832 TTCAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TAATTTTCTTTT
Found at i:25010051 original size:19 final size:19
Alignment explanation
Indices: 25010027--25010067 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
25010017 AAATCAGCTT
25010027 AACTTGTAACTCAGCCAAC
1 AACTTGTAACTCAGCCAAC
25010046 AACTTGTAACTCAGCCAAC
1 AACTTGTAACTCAGCCAAC
25010065 AAC
1 AAC
25010068 CCACCATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.20
Consensus pattern (19 bp):
AACTTGTAACTCAGCCAAC
Found at i:25010461 original size:8 final size:8
Alignment explanation
Indices: 25010441--25010474 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
25010431 TAACCGTGAC
25010441 CAATGTG-
1 CAATGTGT
25010448 CAATGTGT
1 CAATGTGT
25010456 CAATGTGT
1 CAATGTGT
25010464 CAATGTGT
1 CAATGTGT
25010472 CAA
1 CAA
25010475 AACTAACTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (8 bp):
CAATGTGT
Found at i:25016433 original size:25 final size:25
Alignment explanation
Indices: 25016377--25016443 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
25016367 TATGGCTTTT
* * **
25016377 ATGAGATTCCCGTTATATAGCCCGG
1 ATGAGCTTCCCGTTATACAGCCCAC
* *
25016402 ATAAGCTTCCCGTTATACAGCTCAC
1 ATGAGCTTCCCGTTATACAGCCCAC
*
25016427 ATGAGCTTCCTGTTATA
1 ATGAGCTTCCCGTTATA
25016444 TGGCTCGAGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATACAGCCCAC
Found at i:25018738 original size:14 final size:14
Alignment explanation
Indices: 25018721--25018748 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25018711 TAGTGTTTCC
25018721 AAAAACCATTTGTT
1 AAAAACCATTTGTT
25018735 AAAAACCATTTGTT
1 AAAAACCATTTGTT
25018749 TGCGTAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
AAAAACCATTTGTT
Found at i:25026293 original size:49 final size:49
Alignment explanation
Indices: 25026225--25026369 Score: 175
Period size: 49 Copynumber: 3.0 Consensus size: 49
25026215 TTGTAACTCA
* ** *
25026225 GGCTCCCAATTCATGGTGGTTATATGGTCACGAGTTGAAGTATAACTAG
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACTAG
** *
25026274 GGCTCCTGATTGACAGTGGTTATACGGTCAC-AGGTTGAAATATAACTAG
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGA-GTTGAAGTATAACTAG
* * * *
25026323 GGCTCCCAATTGACAATGGTTATGCAGTCACGAGTTGAAGTGTAACT
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACT
25026370 CGAGCCCCAG
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 78 0.98
50 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (49 bp):
GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACTAG
Found at i:25029430 original size:13 final size:14
Alignment explanation
Indices: 25029408--25029437 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
25029398 CTTGAGTTAG
25029408 AAAATGAAAAAATA
1 AAAATGAAAAAATA
25029422 AAAAT-AAAAAATA
1 AAAATGAAAAAATA
25029435 AAA
1 AAA
25029438 GCATTGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAAATA
Found at i:25041211 original size:19 final size:18
Alignment explanation
Indices: 25041176--25041211 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
25041166 GAAGCAAGCA
*
25041176 ATGATTGAAGAAATCAGG
1 ATGATTGAAAAAATCAGG
25041194 ATGATTGAAAAGAATCAG
1 ATGATTGAAAA-AATCAG
25041212 ACCTGGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.25, T:0.22
Consensus pattern (18 bp):
ATGATTGAAAAAATCAGG
Found at i:25045010 original size:13 final size:13
Alignment explanation
Indices: 25044992--25045017 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25044982 AATCAGATAC
25044992 GATTCCTGGTGAG
1 GATTCCTGGTGAG
25045005 GATTCCTGGTGAG
1 GATTCCTGGTGAG
25045018 CACTTAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31
Consensus pattern (13 bp):
GATTCCTGGTGAG
Found at i:25049469 original size:22 final size:23
Alignment explanation
Indices: 25049427--25049470 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
25049417 CTAGAATTTA
25049427 TAAAAAATTTGAGAAAGTTTAAT
1 TAAAAAATTTGAGAAAGTTTAAT
* *
25049450 TAAAATATTTGA-AAATTTTAA
1 TAAAAAATTTGAGAAAGTTTAA
25049471 AGTGTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (23 bp):
TAAAAAATTTGAGAAAGTTTAAT
Found at i:25063322 original size:15 final size:15
Alignment explanation
Indices: 25063304--25063338 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
25063294 TCCATTTTCG
25063304 TTTTTTTTATTTTGT
1 TTTTTTTTATTTTGT
*
25063319 TTTTCTTTATTTTGT
1 TTTTTTTTATTTTGT
25063334 TTTTT
1 TTTTT
25063339 AGTTTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.86
Consensus pattern (15 bp):
TTTTTTTTATTTTGT
Found at i:25063356 original size:24 final size:23
Alignment explanation
Indices: 25063318--25063389 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 23
25063308 TTTTATTTTG
*
25063318 TTTTTCTTTATTTTGTTTTTTAGTT
1 TTTTTATTTA-TTTGTTTTTTA-TT
**
25063343 TTTTTATTTATTTGTCCTTTATT
1 TTTTTATTTATTTGTTTTTTATT
*
25063366 TGTTTTATTTATTTGTTTATTATT
1 T-TTTTATTTATTTGTTTTTTATT
25063390 GGTTTTATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
23 3 0.08
24 28 0.70
25 9 0.22
ACGTcount: A:0.12, C:0.04, G:0.07, T:0.76
Consensus pattern (23 bp):
TTTTTATTTATTTGTTTTTTATT
Found at i:25063394 original size:24 final size:24
Alignment explanation
Indices: 25063309--25063397 Score: 76
Period size: 24 Copynumber: 3.7 Consensus size: 24
25063299 TTTCGTTTTT
* *
25063309 TTTATT-TTGTTTTTCTTTATTTTG
1 TTTATTATTGGTTTTATTTA-TTTG
* *
25063333 TTTTTTAGTT-TTTTTATTTATTTG
1 TTTATTA-TTGGTTTTATTTATTTG
* *
25063357 TCCT-TTATTTGTTTTATTTATTTG
1 T-TTATTATTGGTTTTATTTATTTG
25063381 TTTATTATTGGTTTTAT
1 TTTATTATTGGTTTTAT
25063398 AATATTTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
23 3 0.06
24 39 0.72
25 10 0.19
26 2 0.04
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.75
Consensus pattern (24 bp):
TTTATTATTGGTTTTATTTATTTG
Found at i:25063396 original size:12 final size:12
Alignment explanation
Indices: 25063329--25063397 Score: 56
Period size: 11 Copynumber: 5.8 Consensus size: 12
25063319 TTTTCTTTAT
25063329 TTTGTTTT-TTA
1 TTTGTTTTATTA
25063340 GTTT-TTTTATTTA
1 -TTTGTTTTA-TTA
**
25063353 TTTGTCCT-TTA
1 TTTGTTTTATTA
25063364 TTTGTTTTATTTA
1 TTTGTTTTA-TTA
25063377 TTTG-TTTATTA
1 TTTGTTTTATTA
*
25063388 TTGGTTTTAT
1 TTTGTTTTAT
25063398 AATATTTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
11 19 0.41
12 15 0.33
13 12 0.26
ACGTcount: A:0.13, C:0.03, G:0.10, T:0.74
Consensus pattern (12 bp):
TTTGTTTTATTA
Found at i:25063455 original size:22 final size:22
Alignment explanation
Indices: 25063383--25063455 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
25063373 TTTATTTGTT
*
25063383 TATTATTGGTTTTATAATATTTAAA
1 TATTATT--TTTTAAAAT-TTTAAA
* * *
25063408 T-GTATATTTTAAATGTTTTATAA
1 TATTATTTTTTAAA-ATTTTA-AA
25063431 TATTATTTTTTAAAATTTTAAA
1 TATTATTTTTTAAAATTTTAAA
25063453 TAT
1 TAT
25063456 GTTATGAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
22 15 0.39
23 9 0.24
24 13 0.34
25 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (22 bp):
TATTATTTTTTAAAATTTTAAA
Found at i:25064437 original size:136 final size:136
Alignment explanation
Indices: 25064193--25064595 Score: 797
Period size: 136 Copynumber: 3.0 Consensus size: 136
25064183 TGTGAGTAAA
25064193 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
25064258 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
25064323 CACTTC
131 CACTTC
25064329 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
25064394 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
25064459 CACTTC
131 CACTTC
25064465 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
*
25064530 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
25064595 C
131 C
25064596 CCTGAAGTGA
Statistics
Matches: 266, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 266 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (136 bp):
AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
CACTTC
Found at i:25067747 original size:44 final size:44
Alignment explanation
Indices: 25067684--25067772 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
25067674 ATGTCTATCA
* *
25067684 TGATCAATATAAAGTTTTAATGTACTTTAAATTCTAATAGTTAT
1 TGATCAAGATAAAGTTTTAATATACTTTAAATTCTAATAGTTAT
25067728 TGATCAAGATAAAGTTTTAATATACTTTAAATTCTAATAGTTAT
1 TGATCAAGATAAAGTTTTAATATACTTTAAATTCTAATAGTTAT
25067772 T
1 T
25067773 AGAATTAGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (44 bp):
TGATCAAGATAAAGTTTTAATATACTTTAAATTCTAATAGTTAT
Found at i:25068671 original size:178 final size:178
Alignment explanation
Indices: 25068390--25068716 Score: 654
Period size: 178 Copynumber: 1.8 Consensus size: 178
25068380 GTTTAATTTT
25068390 AGTTTTGATTAAGATATATGATTATTGCGAAATGTGAGTAAAAATACTTACTTGTCATGAACTTT
1 AGTTTTGATTAAGATATATGATTATTGCGAAATGTGAGTAAAAATACTTACTTGTCATGAACTTT
25068455 GGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAAATTTGAGATGAAATAAAAAATCA
66 GGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAAATTTGAGATGAAATAAAAAATCA
25068520 ATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATTCACTTC
131 ATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATTCACTTC
25068568 AGTTTTGATTAAGATATATGATTATTGCGAAATGTGAGTAAAAATACTTACTTGTCATGAACTTT
1 AGTTTTGATTAAGATATATGATTATTGCGAAATGTGAGTAAAAATACTTACTTGTCATGAACTTT
25068633 GGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAAATTTGAGATGAAATAAAAAATCA
66 GGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAAATTTGAGATGAAATAAAAAATCA
25068698 ATGGAGGCTTTTAGAAGCC
131 ATGGAGGCTTTTAGAAGCC
25068717 CAATACTTAC
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 149 1.00
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (178 bp):
AGTTTTGATTAAGATATATGATTATTGCGAAATGTGAGTAAAAATACTTACTTGTCATGAACTTT
GGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAAATTTGAGATGAAATAAAAAATCA
ATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATTCACTTC
Found at i:25068799 original size:108 final size:108
Alignment explanation
Indices: 25068610--25068824 Score: 430
Period size: 108 Copynumber: 2.0 Consensus size: 108
25068600 TGTGAGTAAA
25068610 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
25068675 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCC
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCC
25068718 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
25068783 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCC
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCC
25068825 TATCCTACTA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (108 bp):
AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCC
Found at i:25068961 original size:136 final size:136
Alignment explanation
Indices: 25068717--25068984 Score: 527
Period size: 136 Copynumber: 2.0 Consensus size: 136
25068707 TTTAGAAGCC
25068717 CAATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAA
1 CAATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAA
*
25068782 AATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCAT
66 AATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACAT
25068847 TCACTT
131 TCACTT
25068853 CAATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAA
1 CAATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAA
25068918 AATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACAT
66 AATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACAT
25068983 TC
131 TC
25068985 CCTGAAGTGA
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 131 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (136 bp):
CAATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAA
AATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACAT
TCACTT
Found at i:25072092 original size:20 final size:21
Alignment explanation
Indices: 25072069--25072121 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
25072059 TTTTATAACA
25072069 AAATATATATTTTTAAA-TTT
1 AAATATATATTTTTAAATTTT
25072089 AAATAT-TATTTTTAAATTTT
1 AAATATATATTTTTAAATTTT
25072109 AAATATA-ATTTTT
1 AAATATATATTTTT
25072122 TAATATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 10 0.32
20 21 0.68
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AAATATATATTTTTAAATTTT
Found at i:25072139 original size:20 final size:21
Alignment explanation
Indices: 25072069--25072133 Score: 73
Period size: 20 Copynumber: 3.1 Consensus size: 21
25072059 TTTTATAACA
25072069 AAATAT-ATATTTTTAAATT-T
1 AAATATAAT-TTTTTAAATTAT
* *
25072089 AAATATTA-TTTTTAAATTTT
1 AAATATAATTTTTTAAATTAT
25072109 AAATATAATTTTTTAATATTAT
1 AAATATAATTTTTTAA-ATTAT
25072131 AAA
1 AAA
25072134 AAATTTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
20 14 0.36
21 8 0.21
22 7 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AAATATAATTTTTTAAATTAT
Found at i:25072235 original size:23 final size:23
Alignment explanation
Indices: 25072177--25072265 Score: 74
Period size: 22 Copynumber: 3.8 Consensus size: 23
25072167 CTTTCAAAAT
*
25072177 TATTATTTGGTTTATAATATTTTAAA
1 TATTATTT--TTTA-AAAATTTTAAA
* *
25072203 T-GTATATTTTAAAAATTTTAAA
1 TATTATTTTTTAAAAATTTTAAA
*
25072225 TATTATTTTTT-AAATTTTTAAA
1 TATTATTTTTTAAAAATTTTAAA
* *
25072247 AATTATTATTTTTAAAATT
1 TATTATT-TTTTAAAAATT
25072266 ATTTTTAAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
22 27 0.52
23 15 0.29
24 5 0.10
25 4 0.08
26 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATTTTTTAAAAATTTTAAA
Found at i:25072263 original size:15 final size:16
Alignment explanation
Indices: 25072238--25072268 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
25072228 TATTTTTTAA
25072238 ATTTTTAAAAATTATT
1 ATTTTTAAAAATTATT
25072254 ATTTTT-AAAATTATT
1 ATTTTTAAAAATTATT
25072269 TTTAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTTAAAAATTATT
Found at i:25072268 original size:12 final size:12
Alignment explanation
Indices: 25072218--25072310 Score: 59
Period size: 12 Copynumber: 7.8 Consensus size: 12
25072208 ATTTTAAAAA
25072218 TTTTAAATATTAT
1 TTTTAAA-ATTAT
*
25072231 TTTTTAAATT-T
1 TTTTAAAATTAT
**
25072242 TTAAAAATTATTAT
1 TTTTAAA--ATTAT
25072256 TTTTAAAATTAT
1 TTTTAAAATTAT
25072268 TTTT-AAA-TAT
1 TTTTAAAATTAT
* * *
25072278 ATTCAAACTT-T
1 TTTTAAAATTAT
*
25072289 TTTTTAAATTAT
1 TTTTAAAATTAT
*
25072301 ATTTAAAATT
1 TTTTAAAATT
25072311 TTAAAAAATA
Statistics
Matches: 59, Mismatches: 15, Indels: 13
0.68 0.17 0.15
Matches are distributed among these distances:
10 5 0.08
11 17 0.29
12 22 0.37
13 9 0.15
14 6 0.10
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:25072293 original size:22 final size:23
Alignment explanation
Indices: 25072251--25072312 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
25072241 TTTAAAAATT
* * *
25072251 ATTATTTTTAAAATTATTTTTAA
1 ATTATATTCAAAATTTTTTTTAA
*
25072274 A-TATATTCAAACTTTTTTTTAA
1 ATTATATTCAAAATTTTTTTTAA
*
25072296 ATTATATTTAAAATTTT
1 ATTATATTCAAAATTTT
25072313 AAAAAATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (23 bp):
ATTATATTCAAAATTTTTTTTAA
Found at i:25078584 original size:9 final size:8
Alignment explanation
Indices: 25078569--25078621 Score: 52
Period size: 8 Copynumber: 6.1 Consensus size: 8
25078559 ATAAAATATT
25078569 ATAAAAAA
1 ATAAAAAA
25078577 ATTAAAAAAA
1 A-T-AAAAAA
25078587 ATTAAAAAA
1 A-TAAAAAA
*
25078596 GATAAACAA
1 -ATAAAAAA
25078605 ATAAAAAA
1 ATAAAAAA
*
25078613 ACAAAAAA
1 ATAAAAAA
25078621 A
1 A
25078622 GGACAAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
8 16 0.41
9 13 0.33
10 10 0.26
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (8 bp):
ATAAAAAA
Found at i:25078584 original size:10 final size:10
Alignment explanation
Indices: 25078561--25078595 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
25078551 AAATATACAT
*
25078561 AAAATATTATA
1 AAAAAATTA-A
25078572 AAAAAATTAA
1 AAAAAATTAA
25078582 AAAAAATTAA
1 AAAAAATTAA
25078592 AAAA
1 AAAA
25078596 GATAAACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.65
11 8 0.35
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:25078748 original size:23 final size:22
Alignment explanation
Indices: 25078718--25078766 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
25078708 AACAGTTTAA
* *
25078718 AAAAATAATTTTTAAAATTTTTT
1 AAAAATAATATTTAAAA-ATTTT
25078741 AAAAATAATATTTAAAAATTTT
1 AAAAATAATATTTAAAAATTTT
25078763 AAAA
1 AAAA
25078767 TATACATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAATAATATTTAAAAATTTT
Found at i:25078760 original size:24 final size:23
Alignment explanation
Indices: 25078718--25078762 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
25078708 AACAGTTTAA
*
25078718 AAAAATAATTTTTAAAATTTTTT
1 AAAAATAATTTTAAAAATTTTTT
25078741 AAAAATAATATTTAAAAATTTT
1 AAAAATAAT-TTTAAAAATTTT
25078763 AAAATATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
AAAAATAATTTTAAAAATTTTTT
Found at i:25078779 original size:22 final size:22
Alignment explanation
Indices: 25078737--25078779 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
25078727 TTTTAAAATT
* *
25078737 TTTTAAAAATAATATTTAAAAA
1 TTTTAAAAATAACATTAAAAAA
25078759 TTTT-AAAATATACATTAAAAA
1 TTTTAAAAATA-ACATTAAAAA
25078780 TACTATAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTTAAAAATAACATTAAAAAA
Found at i:25078858 original size:21 final size:22
Alignment explanation
Indices: 25078835--25078889 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
25078825 ATATATTTTA
25078835 AATATTTTATAATATTAAAAAAAT
1 AATA-TTTA-AATATTAAAAAAAT
*
25078859 AATATTTAAAT-TTTAAAAAAT
1 AATATTTAAATATTAAAAAAAT
*
25078880 AATTTTTAAA
1 AATATTTAAA
25078890 AAATATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 18 0.62
22 3 0.10
23 4 0.14
24 4 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATTTAAATATTAAAAAAAT
Found at i:25078882 original size:35 final size:35
Alignment explanation
Indices: 25078843--25078926 Score: 125
Period size: 35 Copynumber: 2.4 Consensus size: 35
25078833 TAAATATTTT
25078843 ATAATATTAAAAAAATAATATTT-AAATTTTAAAAA
1 ATAATATTAAAAAAAT-ATATTTAAAATTTTAAAAA
* *
25078878 ATAATTTTTAAAAAATATATTTAAAATTTTAAAAA
1 ATAATATTAAAAAAATATATTTAAAATTTTAAAAA
*
25078913 ATAATATTATAAAA
1 ATAATATTAAAAAA
25078927 CATTTAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 6 0.14
35 37 0.86
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (35 bp):
ATAATATTAAAAAAATATATTTAAAATTTTAAAAA
Found at i:25078888 original size:14 final size:13
Alignment explanation
Indices: 25078869--25078903 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
25078859 AATATTTAAA
25078869 TTTTAAAAAATAAT
1 TTTTAAAAAAT-AT
25078883 TTTTAAAAAATAT
1 TTTTAAAAAATAT
*
25078896 ATTTAAAA
1 TTTTAAAA
25078904 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTTAAAAAATAT
Found at i:25078912 original size:22 final size:21
Alignment explanation
Indices: 25078883--25078949 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 21
25078873 AAAAAATAAT
25078883 TTTTAAAAAATATATTTAAAA
1 TTTTAAAAAATATATTTAAAA
25078904 TTTTAAAAAATAATATTATAAAA
1 TTTTAAAAAAT-ATATT-TAAAA
* * *
25078927 CATTTAAAATATACATTTAAAA
1 -TTTTAAAAAATATATTTAAAA
25078949 T
1 T
25078950 ATTACAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 11 0.28
22 10 0.26
23 9 0.23
24 9 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTTAAAAAATATATTTAAAA
Found at i:25078942 original size:13 final size:13
Alignment explanation
Indices: 25078926--25078951 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25078916 ATATTATAAA
25078926 ACATTTAAAATAT
1 ACATTTAAAATAT
25078939 ACATTTAAAATAT
1 ACATTTAAAATAT
25078952 TACAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:25078985 original size:13 final size:15
Alignment explanation
Indices: 25078953--25078990 Score: 53
Period size: 13 Copynumber: 2.6 Consensus size: 15
25078943 TTAAAATATT
25078953 ACAAATAGAATAATAA
1 ACAAATA-AATAATAA
25078969 ACAAATAAAT-A-AA
1 ACAAATAAATAATAA
25078982 ACAAATAAA
1 ACAAATAAA
25078991 GGACAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 1 0.05
15 3 0.14
16 7 0.32
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.16
Consensus pattern (15 bp):
ACAAATAAATAATAA
Found at i:25078989 original size:24 final size:23
Alignment explanation
Indices: 25078968--25079014 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
25078958 TAGAATAATA
25078968 AACAAATAAATAAAACAAATAAAG
1 AACAAATAAA-AAAACAAATAAAG
*
25078992 GACAAATAAAAAAACTAAA-AAAG
1 AACAAATAAAAAAAC-AAATAAAG
25079015 TAAATAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.11
Consensus pattern (23 bp):
AACAAATAAAAAAACAAATAAAG
Found at i:25083460 original size:13 final size:13
Alignment explanation
Indices: 25083444--25083468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25083434 GCCACATCAA
25083444 CTAGTTAACTTGG
1 CTAGTTAACTTGG
25083457 CTAGTTAACTTG
1 CTAGTTAACTTG
25083469 CCACATCAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (13 bp):
CTAGTTAACTTGG
Found at i:25091058 original size:29 final size:29
Alignment explanation
Indices: 25091016--25091115 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
25091006 CATGAAATTG
*
25091016 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTCAAATTGTATA
*
25091045 GCACTAAGTGTGCGAGTTCAAGTTGTATA
1 GCACTAAGTGTGCGAGTTCAAATTGTATA
* *
25091074 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGAGTTCAAATTGTATA
*
25091102 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
25091116 GACTTACTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCAAATTGTATA
Found at i:25104992 original size:47 final size:47
Alignment explanation
Indices: 25104923--25105118 Score: 297
Period size: 47 Copynumber: 4.2 Consensus size: 47
25104913 NNNNNNNNNN
* *
25104923 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGT
1 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATAT
*
25104970 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATAT
1 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATAT
*
25105017 GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATAT
1 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATAT
* * *
25105064 GTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTGTATAAAT
1 GTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGTATATAT
25105111 GTGATAAG
1 GTGATAAG
25105119 TCCCGAAGGG
Statistics
Matches: 138, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.01
47 134 0.97
48 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATAT
Found at i:25104996 original size:22 final size:22
Alignment explanation
Indices: 25104969--25105090 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
25104959 CATGTGTATG
25104969 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
25104991 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
25105016 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
25105038 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
25105063 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
25105085 TGTGAT
1 TGTGAT
25105091 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:25109875 original size:18 final size:18
Alignment explanation
Indices: 25109852--25109886 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25109842 GTAGGTTTCC
*
25109852 AAAAATAGAAATAGAAAT
1 AAAAATAAAAATAGAAAT
*
25109870 AAAAATAAAAATGGAAA
1 AAAAATAAAAATAGAAA
25109887 CTTGTAATCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (18 bp):
AAAAATAAAAATAGAAAT
Found at i:25117211 original size:16 final size:16
Alignment explanation
Indices: 25117187--25117224 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
25117177 ATTTAGCCAT
25117187 TTTTATTTTTA-TTGTAA
1 TTTT-TTTTTAGTT-TAA
25117204 TTTTTTTTTAGTTTAA
1 TTTTTTTTTAGTTTAA
25117220 TTTTT
1 TTTTT
25117225 GCATTCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTTTTTTTAGTTTAA
Found at i:25120016 original size:29 final size:28
Alignment explanation
Indices: 25119977--25120060 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
25119967 CACTTTGTGC
25119977 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
**
25120006 TATTCTGGTGTGTTTTAAAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
25120034 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
25120061 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.21, C:0.04, G:0.27, T:0.48
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:25120030 original size:23 final size:23
Alignment explanation
Indices: 25120004--25120072 Score: 66
Period size: 28 Copynumber: 2.8 Consensus size: 23
25119994 GATGGATTAT
25120004 ATTATTCTGGTGTGTTTTAAAGG
1 ATTATTCTGGTGTGTTTTAAAGG
**
25120027 ATTATATGATACTGGTGTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTTAAAGG
*
25120055 ATTATACTGGTGTGTTTT
1 ATTATTCTGGTGTGTTTT
25120073 GGTTGGACAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
23 13 0.34
24 1 0.03
25 3 0.08
26 3 0.08
27 2 0.05
28 16 0.42
ACGTcount: A:0.20, C:0.04, G:0.28, T:0.48
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTTAAAGG
Found at i:25120295 original size:23 final size:23
Alignment explanation
Indices: 25120265--25120351 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 23
25120255 GCTTTACTGA
*
25120265 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
25120288 TCAGGCACCTTGTGTGTCGCA--
1 TCAGGCACCTTATGTGTCGTATT
* **
25120309 GCAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTATGTGTCGTATT
25120330 TCAGGCA-CTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
25120352 CTGATCAGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
20 9 0.17
21 23 0.44
22 2 0.04
23 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:25122363 original size:33 final size:33
Alignment explanation
Indices: 25122326--25122391 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
25122316 CATTTGACAG
25122326 ATCAGCTGAGTATATGTATCCCTGAGAGGGTAA
1 ATCAGCTGAGTATATGTATCCCTGAGAGGGTAA
*
25122359 ATCAGCTGAGTATATGTATCCTTGAGAGGGTAA
1 ATCAGCTGAGTATATGTATCCCTGAGAGGGTAA
25122392 TTTAAAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (33 bp):
ATCAGCTGAGTATATGTATCCCTGAGAGGGTAA
Found at i:25127686 original size:15 final size:15
Alignment explanation
Indices: 25127666--25127695 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25127656 CTTTTTTTTC
25127666 CTTTTTCTTATTCTT
1 CTTTTTCTTATTCTT
25127681 CTTTTTCTTATTCTT
1 CTTTTTCTTATTCTT
25127696 ATACTTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (15 bp):
CTTTTTCTTATTCTT
Found at i:25127766 original size:10 final size:11
Alignment explanation
Indices: 25127738--25127775 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
25127728 CTACTATTTC
25127738 TATTATTTTTAG
1 TATT-TTTTTAG
25127750 TATTTTTTTAG
1 TATTTTTTTAG
*
25127761 TATTTTTTTAC
1 TATTTTTTTAG
25127772 TATT
1 TATT
25127776 ACCTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 21 0.84
12 4 0.16
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (11 bp):
TATTTTTTTAG
Found at i:25132396 original size:13 final size:13
Alignment explanation
Indices: 25132380--25132404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25132370 TTTTTCAAGA
25132380 AAATTCTTTAATC
1 AAATTCTTTAATC
25132393 AAATTCTTTAAT
1 AAATTCTTTAAT
25132405 TGAACAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:25134839 original size:16 final size:16
Alignment explanation
Indices: 25134814--25134844 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25134804 ATAATATCCC
25134814 CTAACAGTCAAATTCT
1 CTAACAGTCAAATTCT
*
25134830 CTAACGGTCAAATTC
1 CTAACAGTCAAATTC
25134845 CCAACGACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (16 bp):
CTAACAGTCAAATTCT
Found at i:25137643 original size:16 final size:16
Alignment explanation
Indices: 25137622--25137658 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
25137612 CTAAAACCCT
* *
25137622 CAAACAAAATCTTAAA
1 CAAACAAAACCCTAAA
25137638 CAAACAAAACCCTAAA
1 CAAACAAAACCCTAAA
25137654 CAAAC
1 CAAAC
25137659 CTTAAGGCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.62, C:0.27, G:0.00, T:0.11
Consensus pattern (16 bp):
CAAACAAAACCCTAAA
Found at i:25143046 original size:9 final size:9
Alignment explanation
Indices: 25143015--25143065 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
25143005 TTCATGCTGC
25143015 TCCTCTTGT
1 TCCTCTTGT
*
25143024 TCATCTTGT
1 TCCTCTTGT
* *
25143033 ACCTCCTGT
1 TCCTCTTGT
* *
25143042 TCCTCGTGA
1 TCCTCTTGT
25143051 TCCTCTTGT
1 TCCTCTTGT
25143060 TCCTCT
1 TCCTCT
25143066 ACATTTCCTC
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.06, C:0.35, G:0.12, T:0.47
Consensus pattern (9 bp):
TCCTCTTGT
Found at i:25152452 original size:43 final size:43
Alignment explanation
Indices: 25152390--25152547 Score: 196
Period size: 43 Copynumber: 3.7 Consensus size: 43
25152380 GTACAATATC
* *
25152390 ATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCA
1 ATATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCA
* * * *
25152433 TTATCCCAGACA-GGCTCTTACACGTAATCGA-TTAACGATGCCA
1 ATATCCCAGACATGG-TCTTACATGTAATC-ACATATCGATGCCA
*
25152476 ATATCCCAGACATGGTCTTACATGTAATCACA-ATACAATGCCA
1 ATATCCCAGACATGGTCTTACATGTAATCACATAT-CGATGCCA
*
25152519 ATATCCCAGACATAGTCTTACATGTAATC
1 ATATCCCAGACATGGTCTTACATGTAATC
25152548 TCATCTCGGC
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 4 0.04
43 91 0.93
44 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (43 bp):
ATATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCA
Found at i:25152538 original size:86 final size:86
Alignment explanation
Indices: 25152390--25152547 Score: 230
Period size: 86 Copynumber: 1.8 Consensus size: 86
25152380 GTACAATATC
* * * * *
25152390 ATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCATTATCCCAGACAGGCTCTTACA
1 ATATCCCAGACATGGTCTTACATGTAATCACATATCAATGCCAATATCCCAGACAAGCTCTTACA
25152455 CGTAATCGATTAACGATGCCA
66 CGTAATCGATTAACGATGCCA
25152476 ATATCCCAGACATGGTCTTACATGTAATCACA-ATACAATGCCAATATCCCAGACATAG-TCTTA
1 ATATCCCAGACATGGTCTTACATGTAATCACATAT-CAATGCCAATATCCCAGACA-AGCTCTTA
*
25152539 CATGTAATC
64 CACGTAATC
25152548 TCATCTCGGC
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
85 2 0.03
86 61 0.95
87 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (86 bp):
ATATCCCAGACATGGTCTTACATGTAATCACATATCAATGCCAATATCCCAGACAAGCTCTTACA
CGTAATCGATTAACGATGCCA
Found at i:25153662 original size:36 final size:36
Alignment explanation
Indices: 25153611--25153720 Score: 175
Period size: 36 Copynumber: 3.1 Consensus size: 36
25153601 TTTTCTCAAA
* *
25153611 TTAACCACTTAAATGACAACATTAGCATACGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
* *
25153647 TTAGCCACTTAAATGATAAAATTCGCATACGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
*
25153683 TTAACCACTTAAATGATAAAATTAGCATATGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
25153719 TT
1 TT
25153721 CACACATACA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (36 bp):
TTAACCACTTAAATGATAAAATTAGCATACGAAACT
Found at i:25168088 original size:17 final size:16
Alignment explanation
Indices: 25168038--25168095 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 16
25168028 GGGTGAGAAG
25168038 TAAAAGTTTAGGGGAAAAA
1 TAAAAGTTTA-GGG--AAA
*
25168057 TAAAAAGTTTTGGGAAA
1 T-AAAAGTTTAGGGAAA
25168074 TAAAAGTTTGAGGGAAA
1 TAAAAGTTT-AGGGAAA
25168091 GTAAA
1 -TAAA
25168096 TAGGGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 10 0.29
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (16 bp):
TAAAAGTTTAGGGAAA
Found at i:25170521 original size:18 final size:18
Alignment explanation
Indices: 25170481--25170527 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
25170471 CCTCCGGCTG
* * *
25170481 TGGCTCGGGCTCGGGCTC
1 TGGCTCTGGCTCAGGATC
*
25170499 GGGCTCTGGCTCAGGATC
1 TGGCTCTGGCTCAGGATC
25170517 TGGCTCTGGCT
1 TGGCTCTGGCT
25170528 TGGCCTCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.04, C:0.30, G:0.40, T:0.26
Consensus pattern (18 bp):
TGGCTCTGGCTCAGGATC
Found at i:25170524 original size:6 final size:6
Alignment explanation
Indices: 25170476--25170531 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
25170466 CTTGACCTCC
* * * * * *
25170476 GGCTGT GGCTCG GGCTCG GGCTCG GGCTCT GGCTCA GGATCT GGCTCT
1 GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT
25170524 GGCT-T GGC
1 GGCTCT GGC
25170532 CTCTATATCG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
5 4 0.09
6 39 0.91
ACGTcount: A:0.04, C:0.29, G:0.43, T:0.25
Consensus pattern (6 bp):
GGCTCT
Found at i:25170962 original size:45 final size:45
Alignment explanation
Indices: 25170898--25170987 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
25170888 GTGCGTTAGT
*
25170898 GCACCACAATTGAGAATGAATGTAGGCAGACGAGGGTATAATAGC
1 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
25170943 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
1 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
25170988 TGCAATTTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.18
Consensus pattern (45 bp):
GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
Found at i:25172868 original size:17 final size:17
Alignment explanation
Indices: 25172846--25172878 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
25172836 AAAAAGTTAT
25172846 TTTTCGTATTTTATTTC
1 TTTTCGTATTTTATTTC
25172863 TTTTCGTATTTTATTT
1 TTTTCGTATTTTATTT
25172879 TTTCATTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (17 bp):
TTTTCGTATTTTATTTC
Found at i:25172912 original size:17 final size:16
Alignment explanation
Indices: 25172845--25172913 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
25172835 CAAAAAGTTA
*
25172845 TTTTTCGTATTTTATT
1 TTTTTAGTATTTTATT
*
25172861 TCTTTTCGTATTTTATT
1 T-TTTTAGTATTTTATT
* * ***
25172878 TTTTCATTAAGATATT
1 TTTTTAGTATTTTATT
25172894 TTTTTAGTATTTTATT
1 TTTTTAGTATTTTATT
25172910 TTTT
1 TTTT
25172914 ATTTTATTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
16 25 0.61
17 16 0.39
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTTAGTATTTTATT
Found at i:25173439 original size:16 final size:15
Alignment explanation
Indices: 25173405--25173464 Score: 63
Period size: 14 Copynumber: 4.1 Consensus size: 15
25173395 TGTCGCCTGC
*
25173405 TTCTCCTTCTCTT-TT
1 TTCTTCTTC-CTTCTT
25173420 TTCTTCTTCCCTTCTT
1 TTCTTCTT-CCTTCTT
25173436 TTCTTCTT-CTTCTT
1 TTCTTCTTCCTTCTT
*
25173450 CT-TTCTTCCTTCTT
1 TTCTTCTTCCTTCTT
25173464 T
1 T
25173465 CAAGCAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
13 5 0.13
14 13 0.33
15 10 0.26
16 11 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCTTCTTCCTTCTT
Found at i:25175146 original size:17 final size:17
Alignment explanation
Indices: 25175112--25175146 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
25175102 TCTCCCCTAT
*
25175112 TATTATTATCATTTTTA
1 TATTATTATCATTCTTA
*
25175129 TATTATTATTATTCTTA
1 TATTATTATCATTCTTA
25175146 T
1 T
25175147 TAGTACATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTATTATCATTCTTA
Found at i:25179399 original size:19 final size:19
Alignment explanation
Indices: 25179375--25179419 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
25179365 CTCTTTAGTC
*
25179375 TTGCATT-CATCTCATGCAT
1 TTGCATTACATCACAT-CAT
25179394 TTGCATTACATCACATCAT
1 TTGCATTACATCACATCAT
*
25179413 GTGCATT
1 TTGCATT
25179420 GAATTTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.40
Consensus pattern (19 bp):
TTGCATTACATCACATCAT
Found at i:25181346 original size:32 final size:30
Alignment explanation
Indices: 25181279--25181363 Score: 73
Period size: 32 Copynumber: 2.7 Consensus size: 30
25181269 CCCCTAAAAG
* **
25181279 TTTTTGAAAATTTTCATTATACACTTTTTTGT
1 TTTTTGAAAATTTT-ATTAAACAC-TTAATGT
*
25181311 TTTTTGAAAATTTTAATTAAACCCTTCAAT-T
1 TTTTTGAAAATTTT-ATTAAACACTT-AATGT
*
25181342 TTTTTAAAAATTCTTATTAAAC
1 TTTTTGAAAATT-TTATTAAAC
25181364 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
31 21 0.47
32 24 0.53
ACGTcount: A:0.33, C:0.11, G:0.04, T:0.53
Consensus pattern (30 bp):
TTTTTGAAAATTTTATTAAACACTTAATGT
Found at i:25181352 original size:31 final size:31
Alignment explanation
Indices: 25181310--25181391 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
25181300 CACTTTTTTG
* *
25181310 TTTTTTGAAAATTTTAATTAAACCCT-TCAAT
1 TTTTTTAAAAATTTTAATTAAA-CCTATCAAA
*
25181341 TTTTTTAAAAATTCTT-ATTAAACTTATCAAA
1 TTTTTTAAAAATT-TTAATTAAACCTATCAAA
* *
25181372 ATTTTTAAAAATTTCAATTA
1 TTTTTTAAAAATTTTAATTA
25181392 GATACTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
30 3 0.07
31 38 0.88
32 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.01, T:0.49
Consensus pattern (31 bp):
TTTTTTAAAAATTTTAATTAAACCTATCAAA
Found at i:25181699 original size:58 final size:58
Alignment explanation
Indices: 25181629--25181741 Score: 181
Period size: 58 Copynumber: 1.9 Consensus size: 58
25181619 TAAGTTTTTT
* * *
25181629 TCGAGTTAATTTGTGACATCAATTCAATTAACGATATTATTAATATACGAACAATTTG
1 TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAATTTG
* *
25181687 TCGAGTTGATTTGTGACACCAATTTAATTAACGACATTATCAATATACGAACAAT
1 TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAAT
25181742 GTGGGAATCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (58 bp):
TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAATTTG
Found at i:25189975 original size:12 final size:12
Alignment explanation
Indices: 25189958--25189984 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25189948 ACATACCATC
25189958 GGAACAAATTGT
1 GGAACAAATTGT
25189970 GGAACAAATTGT
1 GGAACAAATTGT
25189982 GGA
1 GGA
25189985 TCCCCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.22
Consensus pattern (12 bp):
GGAACAAATTGT
Found at i:25192394 original size:24 final size:24
Alignment explanation
Indices: 25192341--25192386 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
25192331 TTTTTGTAGA
* *
25192341 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGCATTTATTAGCATAAT
25192365 ATATTTAGCATTTATTAGCATA
1 ATATTTAGCATTTATTAGCATA
25192387 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGCATAAT
Found at i:25194610 original size:24 final size:24
Alignment explanation
Indices: 25194545--25194619 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 24
25194535 AGTAAAACTA
25194545 TCTTTGCCCGTGGCTTTTTTTTATCT
1 TCTTTGCCCGTGGC--TTTTTTATCT
* *
25194571 TCTTTG---GAGGAGTTTTTTATCT
1 TCTTTGCCCGTGG-CTTTTTTATCT
25194593 TCTTTGCCCGTGGCTTTTTTATCT
1 TCTTTGCCCGTGGCTTTTTTATCT
25194617 TCT
1 TCT
25194620 GCTATTTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.39
23 3 0.07
24 13 0.32
25 3 0.07
26 6 0.15
ACGTcount: A:0.07, C:0.20, G:0.17, T:0.56
Consensus pattern (24 bp):
TCTTTGCCCGTGGCTTTTTTATCT
Found at i:25195643 original size:39 final size:39
Alignment explanation
Indices: 25195589--25195667 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
25195579 GGAGGTTAAG
25195589 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
1 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
* *
25195628 TAAGGTTAAACAATTTATCTTCGTTATCCTCCATTAGGC
1 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
25195667 T
1 T
25195668 TCACTAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (39 bp):
TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
Found at i:25197995 original size:3 final size:3
Alignment explanation
Indices: 25197987--25198013 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
25197977 AATTCCAGTT
25197987 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
25198014 AAGAGGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:25199383 original size:35 final size:34
Alignment explanation
Indices: 25199330--25199403 Score: 148
Period size: 34 Copynumber: 2.2 Consensus size: 34
25199320 TTTCTACAAA
25199330 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
1 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
25199364 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
1 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
25199398 AAAATA
1 AAAATA
25199404 AATTTGATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (34 bp):
AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
Found at i:25199566 original size:16 final size:17
Alignment explanation
Indices: 25199547--25199579 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
25199537 TGACTTTTTA
*
25199547 TAAAAATAA-TTTTTGG
1 TAAAAAAAACTTTTTGG
25199563 TAAAAAAAACTTTTTGG
1 TAAAAAAAACTTTTTGG
25199580 ACTAATTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.39
Consensus pattern (17 bp):
TAAAAAAAACTTTTTGG
Found at i:25206981 original size:17 final size:17
Alignment explanation
Indices: 25206937--25206983 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
25206927 CGCTTCCTAA
*
25206937 ATAATAGA-AATTT-TT
1 ATAATAGATATTTTATT
*
25206952 ATAA-AGATGTTTTATT
1 ATAATAGATATTTTATT
25206968 ATAATAGATATTTTAT
1 ATAATAGATATTTTAT
25206984 ATATCATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 3 0.12
15 7 0.27
16 6 0.23
17 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (17 bp):
ATAATAGATATTTTATT
Found at i:25206986 original size:16 final size:16
Alignment explanation
Indices: 25206937--25206986 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
25206927 CGCTTCCTAA
*
25206937 ATAATAGAAATTTT-T
1 ATAATAGATATTTTAT
*
25206952 ATAA-AGATGTTTTATT
1 ATAATAGATATTTTA-T
25206968 ATAATAGATATTTTAT
1 ATAATAGATATTTTAT
25206984 ATA
1 ATA
25206987 TCATAACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 7 0.24
15 4 0.14
16 9 0.31
17 9 0.31
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (16 bp):
ATAATAGATATTTTAT
Found at i:25209054 original size:13 final size:13
Alignment explanation
Indices: 25209036--25209063 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25209026 ACAAAATTGG
25209036 AAAGATGAAAAAT
1 AAAGATGAAAAAT
25209049 AAAGATGAAAAAT
1 AAAGATGAAAAAT
25209062 AA
1 AA
25209064 TAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:25210136 original size:25 final size:26
Alignment explanation
Indices: 25210084--25210136 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
25210074 GAGCTTTCCA
* * *
25210084 ATTAAAGACTCTTTGTGAGCTTCTTG
1 ATTAAAGACTCTCTGTGAGCTACGTG
*
25210110 ATTAATGACTCTCTG-GAGCTACGTG
1 ATTAAAGACTCTCTGTGAGCTACGTG
25210135 AT
1 AT
25210137 ATGGCTTGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTAAAGACTCTCTGTGAGCTACGTG
Found at i:25212505 original size:28 final size:29
Alignment explanation
Indices: 25212474--25212585 Score: 84
Period size: 29 Copynumber: 3.9 Consensus size: 29
25212464 ATACATGCAT
*
25212474 ATGGCCCACTAGGCCCAATT-TTATTCAA
1 ATGGCCCACTAGGCCCAATTCATATTCAA
* ***
25212502 ATGGCCCATCT-GGCCCAGTTCATATTTTT
1 ATGGCCCA-CTAGGCCCAATTCATATTCAA
* * * *
25212531 ATGGCCCACTAGGCCTAAATCACATTCAT
1 ATGGCCCACTAGGCCCAATTCATATTCAA
* * * *
25212560 ATGGCCCATTAGACTCAAATCATATT
1 ATGGCCCACTAGGCCCAATTCATATT
25212586 ATATTCATGC
Statistics
Matches: 65, Mismatches: 16, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
28 18 0.28
29 47 0.72
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
ATGGCCCACTAGGCCCAATTCATATTCAA
Found at i:25212545 original size:29 final size:28
Alignment explanation
Indices: 25212471--25212567 Score: 88
Period size: 29 Copynumber: 3.4 Consensus size: 28
25212461 TGCATACATG
*
25212471 CATATGGCCCACTAGGCCCAATTTTATT
1 CATATGGCCCACTAGGCCCAATTATATT
* *
25212499 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATT-ATATT
** * * *
25212528 TTTATGGCCCACTAGGCCTAAATCACATT
1 CATATGGCCCACTAGGCC-CAATTATATT
25212557 CATATGGCCCA
1 CATATGGCCCA
25212568 TTAGACTCAA
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
28 20 0.38
29 31 0.58
30 2 0.04
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATTATATT
Found at i:25212691 original size:19 final size:19
Alignment explanation
Indices: 25212667--25212704 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
25212657 CAGCCTATCA
25212667 GGCCCATTTAGCCAATTCT
1 GGCCCATTTAGCCAATTCT
*
25212686 GGCCCATTTGGCCAATTCT
1 GGCCCATTTAGCCAATTCT
25212705 CAACCCAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCT
Found at i:25214070 original size:16 final size:16
Alignment explanation
Indices: 25214049--25214080 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
25214039 GAAAAATTCA
25214049 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
25214065 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
25214081 GGGGCATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (16 bp):
AGATTTCGAGATTTTT
Found at i:25216951 original size:29 final size:30
Alignment explanation
Indices: 25216926--25216990 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
25216916 TGACCCATCT
* * * *
25216926 GGCCCAGTTCATATTCTTATGGCCCA-CTA
1 GGCCCAATTCACATTCATATAGCCCATCTA
25216955 GGCCCAATTCACATTCATATAGCCCAT-TA
1 GGCCCAATTCACATTCATATAGCCCATCTA
25216984 GGCCCAA
1 GGCCCAA
25216991 ATAATATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (30 bp):
GGCCCAATTCACATTCATATAGCCCATCTA
Found at i:25217105 original size:19 final size:19
Alignment explanation
Indices: 25217081--25217117 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25217071 AGCCCATCAG
25217081 GCCCATTTAGCCAATTCTA
1 GCCCATTTAGCCAATTCTA
*
25217100 GCCCATTTGGCCAATTCT
1 GCCCATTTAGCCAATTCT
25217118 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (19 bp):
GCCCATTTAGCCAATTCTA
Found at i:25219546 original size:152 final size:152
Alignment explanation
Indices: 25219294--25219567 Score: 386
Period size: 152 Copynumber: 1.8 Consensus size: 152
25219284 CCCATATATG
* ** * * *
25219294 TCGTCGAAATAGGGTTATAGAGCATTACTGTAAAAATGTAACTTAAAATCATCAATTTTCAAACA
1 TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
* * *
25219359 TTTCATAACCATAGCAAAATCCATTCAAACACATGCATATCGTCCCTTATTCGAGCCACTAAATG
66 TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCCACTAAATG
25219424 TAACATACCTAACCCGTATCCA
131 TAACATACCTAACCCGTATCCA
* * * * * *
25219446 TCGTCGGAATAGGGTTCTAGAGTATTGCCGTAAAAACATAAATTAAAATTATTAATATCCAAACA
1 TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
* * *
25219511 TTTCATAATCACAGAAAAATCCATTCAAATACATGCATATCATCCTTTATTCGAGCC
66 TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCC
25219568 CTCGAGGCAT
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
152 104 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (152 bp):
TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCCACTAAATG
TAACATACCTAACCCGTATCCA
Found at i:25220744 original size:22 final size:20
Alignment explanation
Indices: 25220719--25220784 Score: 51
Period size: 25 Copynumber: 2.9 Consensus size: 20
25220709 AGCATACTGG
25220719 AATTCATACTTTTCATGAACAT
1 AATTCATACTTTTCAT-AA-AT
25220741 AATTATACATACTTTGATCATAAAT
1 AA-T-T-CATACTTT--TCATAAAT
*
25220766 AATTCATACCTTTCCATAA
1 AATTCATA-CTTTTCATAA
25220785 GTTCTTAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
21 5 0.14
22 6 0.16
23 6 0.16
24 2 0.05
25 12 0.32
26 2 0.05
27 4 0.11
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (20 bp):
AATTCATACTTTTCATAAAT
Found at i:25220767 original size:25 final size:26
Alignment explanation
Indices: 25220723--25220774 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 26
25220713 TACTGGAATT
25220723 CATACTTTTCATGAACATAATT-ATA
1 CATACTTTTCATGAACATAATTCATA
25220748 CATACTTTGATCAT-AA-ATAATTCATA
1 CATACTTT--TCATGAACATAATTCATA
25220774 C
1 C
25220775 CTTTCCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 14 0.58
26 6 0.25
27 4 0.17
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.38
Consensus pattern (26 bp):
CATACTTTTCATGAACATAATTCATA
Found at i:25222702 original size:41 final size:40
Alignment explanation
Indices: 25222656--25222737 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 40
25222646 AATTATGGGA
*
25222656 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAAT
1 TACTGAATATTGTTATGAATACCGAATTGAACTGT-AAAAT
** *
25222697 TACTGAATATTGTTATGAATATTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTATGAATACCGAATTGAACTGTAAAAT
25222737 T
1 T
25222738 TCAGATGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 6 0.16
41 31 0.84
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
TACTGAATATTGTTATGAATACCGAATTGAACTGTAAAAT
Found at i:25222989 original size:39 final size:39
Alignment explanation
Indices: 25222927--25223042 Score: 110
Period size: 45 Copynumber: 2.8 Consensus size: 39
25222917 TTACTGATCA
* * * *
25222927 GACAC-TTATGTGCCGACTACTGTTACTGTTACCGATTC
1 GACACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
25222965 GACACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGATTC
1 GACACTTTGTGTGTCGAATAC---T---GTTACTGTTACAGATTC
*
25223010 -AGCACTTTGTGTGTTGAATACTGTTACTGTTAC
1 GA-CACTTTGTGTGTCGAATACTGTTACTGTTAC
25223043 TATTACTGTT
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
38 5 0.08
39 23 0.35
42 2 0.03
44 1 0.02
45 34 0.52
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (39 bp):
GACACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
Found at i:25223016 original size:45 final size:45
Alignment explanation
Indices: 25222948--25223048 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
25222938 GCCGACTACT
*
25222948 GTTACTGTTACCGATTCGACACTTTGTGTGTCGAATACTGTTACC
1 GTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
* *
25222993 GTTACTGTTACAGATTC-AGCACTTTGTGTGTTGAATACTGTTACT
1 GTTACTGTTACAGATTCGA-CACTTTGTGTGTCGAATACTGTTACC
*
25223038 GTTACTATTAC
1 GTTACTGTTAC
25223049 TGTTACTGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (45 bp):
GTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
Found at i:25223039 original size:6 final size:6
Alignment explanation
Indices: 25223028--25223065 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
25223018 GTGTGTTGAA
* *
25223028 TACTGT TACTGT TACTAT TACTGT TACTGC TACTGT TA
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TA
25223066 TTGATTATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:25223806 original size:14 final size:13
Alignment explanation
Indices: 25223790--25223815 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25223780 GAAATTTATA
25223790 AAAAAAATAAAAT
1 AAAAAAATAAAAT
25223803 AAAAAAATAAAAT
1 AAAAAAATAAAAT
25223816 TCTGGAGTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:25226271 original size:43 final size:43
Alignment explanation
Indices: 25226110--25226273 Score: 131
Period size: 43 Copynumber: 3.8 Consensus size: 43
25226100 CATAGGATTC
* **
25226110 CGATATGTGATTTCATGTAAGACCAAATCTGGGAC-GTTGGCAT
1 CGATATGTGAGTTCATGTAAGACCACGTCTGGGACAG-TGGCAT
* * * * * * *
25226153 CGATTTGTGATTTGCGTGTAAGACAATGTCTGGGACA-TCAGTAT
1 CGATATGTGAGTT-CATGTAAGACCACGTCTGGGACAGT-GGCAT
* * *
25226197 CG-TATATGAGTTCATGTAATACC-CTGCCTGGGACAGTGGCAT
1 CGATATGTGAGTTCATGTAAGACCAC-GTCTGGGACAGTGGCAT
25226239 CGATATGTGA-TTACATGTAAGACCACGTCTGGGAC
1 CGATATGTGAGTT-CATGTAAGACCACGTCTGGGAC
25226274 GTTGGTGTTG
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
42 24 0.26
43 45 0.48
44 24 0.26
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATGTGAGTTCATGTAAGACCACGTCTGGGACAGTGGCAT
Found at i:25234021 original size:43 final size:42
Alignment explanation
Indices: 25233860--25234022 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 42
25233850 CATAGGATTC
* * *
25233860 CGATATGTGATTTCGTGTAAGACCAAGTCTGGGACGTTGGCAT
1 CGATATGTGAGTTCGTGTAAGACCATGTCTGGGAAG-TGGCAT
* *
25233903 CGATTTGTGATTTGCGTGTAAGACCATGTCTGGGACA-TCGGCAT
1 CGATATGTGAGTT-CGTGTAAGACCATGTCTGGGA-AGT-GGCAT
* *
25233947 C-ATATATGAGTTCGTGTAAGACCCTGTCTGGGATAGTGGCAT
1 CGATATGTGAGTTCGTGTAAGACCATGTCTGGGA-AGTGGCAT
* *
25233989 CGATATGTGA-TTACATGTATGACCATGTCTGGGA
1 CGATATGTGAGTT-CGTGTAAGACCATGTCTGGGA
25234023 CGTTGGCGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
42 29 0.28
43 47 0.46
44 26 0.25
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (42 bp):
CGATATGTGAGTTCGTGTAAGACCATGTCTGGGAAGTGGCAT
Found at i:25237772 original size:20 final size:20
Alignment explanation
Indices: 25237744--25237791 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
25237734 TGTAAATATA
25237744 TTTAGGTAGTTATTAAGCTTG
1 TTTA-GTAGTTATTAAGCTTG
*
25237765 TTTAGTAGTTATTAAGTTTG
1 TTTAGTAGTTATTAAGCTTG
25237785 TTTAGTA
1 TTTAGTA
25237792 AATTGTTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.25, C:0.02, G:0.21, T:0.52
Consensus pattern (20 bp):
TTTAGTAGTTATTAAGCTTG
Done.