Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 81 of 310
Found at i:25940311 original size:72 final size:72
Alignment explanation
Indices: 25940156--25940332 Score: 198
Period size: 72 Copynumber: 2.5 Consensus size: 72
25940146 GCCCGCATTT
* * * *
25940156 GAGCTACTCATGGGTCTGTACACAAAGTCAGCACCCAGACCCCAAAGCATTATCATGTAATGCCT
1 GAGCTACTCACGGGTTTATACACAAAGTCAGCACCCAGACCCCAAAGCATTAACATGTAATGCCT
**
25940221 GCTCATT
66 GCTCAGC
* * **
25940228 GAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCTTAAAGCATTAACATG-ATATG-C
1 GAGCTACTCACGGGTTTATACACAAAGTCAGCACCCAGACCCCAAAGCATTAACATGTA-ATGCC
*
25940291 TAGCTTAGC
65 T-GCTCAGC
* *
25940300 GAGTTATTCACGGGTTTATACAC-AAGTCAGCAC
1 GAGCTACTCACGGGTTTATACACAAAGTCAGCAC
25940333 TCAAGCCCAC
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
71 12 0.13
72 77 0.87
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (72 bp):
GAGCTACTCACGGGTTTATACACAAAGTCAGCACCCAGACCCCAAAGCATTAACATGTAATGCCT
GCTCAGC
Found at i:25941039 original size:19 final size:19
Alignment explanation
Indices: 25941008--25941050 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
25940998 CTATAGCAAC
25941008 TCACAATTT-CAA-TTATT
1 TCACAATTTACAATTTATT
25941025 TCACACATTTACAATTTATT
1 TCACA-ATTTACAATTTATT
*
25941045 TTACAA
1 TCACAA
25941051 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (19 bp):
TCACAATTTACAATTTATT
Found at i:25957694 original size:79 final size:81
Alignment explanation
Indices: 25957558--25957742 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
25957548 TTGAATGATG
*
25957558 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
25957622 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
25957637 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
25957699 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
25957717 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25957743 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:25957756 original size:40 final size:40
Alignment explanation
Indices: 25957559--25957742 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
25957549 TGAATGATGT
* * * *
25957559 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
25957599 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
25957639 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25957677 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25957718 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
25957743 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:25957764 original size:79 final size:79
Alignment explanation
Indices: 25957559--25957775 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
25957549 TGAATGATGT
** * * * **
25957559 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
25957622 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
25957639 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
25957704 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
25957718 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
25957776 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:25964281 original size:56 final size:56
Alignment explanation
Indices: 25964195--25964367 Score: 310
Period size: 56 Copynumber: 3.1 Consensus size: 56
25964185 ACAAGGAATG
25964195 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
25964251 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* * * *
25964307 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGGAGT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
25964363 ATGGG
1 ATGGG
25964368 TAATAAAGAA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 113 1.00
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:25965588 original size:40 final size:39
Alignment explanation
Indices: 25965557--25965766 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
25965547 GGACTAAGAT
* *
25965557 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
25965597 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
25965637 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
25965677 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
25965717 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
25965756 CCGAAGGCATT
1 CCGAAGGCATT
25965767 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:25965720 original size:120 final size:120
Alignment explanation
Indices: 25965504--25965766 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
25965494 TTGAATGCTG
* *
25965504 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
25965568 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
25965624 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
25965687 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
25965743 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
25965767 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:25965786 original size:79 final size:80
Alignment explanation
Indices: 25965505--25965801 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
25965495 TGAATGCTGT
* ** * * * **
25965505 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
25965568 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
25965585 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
25965649 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
25965665 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
25965729 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
25965744 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
25965802 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:25968798 original size:3 final size:3
Alignment explanation
Indices: 25968790--25969602 Score: 1608
Period size: 3 Copynumber: 271.0 Consensus size: 3
25968780 GGCAGCAATT
25968790 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25968838 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25968886 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25968934 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25968982 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969030 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969078 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969126 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969174 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969222 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969270 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969318 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969366 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969414 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969462 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969510 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* *
25969558 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAA AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25969603 TTGCTGGATA
Statistics
Matches: 806, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 806 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:25970290 original size:29 final size:28
Alignment explanation
Indices: 25970246--25970316 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 28
25970236 GAAGAAGAAA
* *
25970246 AAAAACATAAACATATTGGGCCATTTACTC
1 AAAAA-ATAAAAATATCGGGCCATTTA-TC
*
25970276 AAAAAATAAAAATATCGGGCCATTTATT
1 AAAAAATAAAAATATCGGGCCATTTATC
25970304 AAAAAATAGAAAA
1 AAAAAATA-AAAA
25970317 AGGAATGACG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.24
29 23 0.62
30 5 0.14
ACGTcount: A:0.54, C:0.13, G:0.10, T:0.24
Consensus pattern (28 bp):
AAAAAATAAAAATATCGGGCCATTTATC
Found at i:25978712 original size:54 final size:54
Alignment explanation
Indices: 25978626--25978832 Score: 181
Period size: 54 Copynumber: 3.9 Consensus size: 54
25978616 ATTAGGGTTT
* * * * * *
25978626 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTTATAAGGC
* * * * * ** *
25978680 AAGGAAATCATGTAAGACCATGTCAACACATGGCATTGATAAACTACTATAAGAC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTTTATAAGGC
* * *
25978735 AA--ATATCCCATGTAAGATCATG-CAA-AGCATGGCAATGGTGAG-TTCATAAGGC
1 AAGGATAT--CATGTAAGACCATGTCAAGA-CATGGCAATGGTAAGTTTTATAAGGC
*
25978787 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTT
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTT
25978833 AAAAAGGAAA
Statistics
Matches: 119, Mismatches: 25, Indels: 18
0.73 0.15 0.11
Matches are distributed among these distances:
52 21 0.18
53 22 0.18
54 52 0.44
55 24 0.20
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTTATAAGGC
Found at i:25980960 original size:26 final size:26
Alignment explanation
Indices: 25980924--25980977 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
25980914 AGATGACAGT
25980924 GACTGAATATGAACGTGAATTTGTCA
1 GACTGAATATGAACGTGAATTTGTCA
*
25980950 GACTGAATATGAATGTGAATTTGTCA
1 GACTGAATATGAACGTGAATTTGTCA
25980976 GA
1 GA
25980978 TTCAGTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.31
Consensus pattern (26 bp):
GACTGAATATGAACGTGAATTTGTCA
Found at i:25985641 original size:202 final size:202
Alignment explanation
Indices: 25985295--25985691 Score: 776
Period size: 202 Copynumber: 2.0 Consensus size: 202
25985285 CGGAAGCTCA
25985295 TTAATCGACTGAGCGAATAATATTTAAACGAAATCACTACTCCAATGCATATACGAAACGTACCT
1 TTAATCGACTGAGCGAATAATATTTAAACGAAATCACTACTCCAATGCATATACGAAACGTACCT
25985360 CATCGTTGGGATTTTATGAGCGTATTAATTGAAAATTATTACAGCAAGATCGCTCATTCCCAAAC
66 CATCGTTGGGATTTTATGAGCGTATTAATTGAAAATTATTACAGCAAGATCGCTCATTCCCAAAC
**
25985425 CAAGTACCTTCGGGTTTTGCTGGATATAGCTACTCGCTTAAATGCCTTCGGGACTTAGCCCGGTT
131 CAAGTACCTTCGGGTTTTGCTGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
25985490 TTAGTAG
196 TTAGTAG
25985497 TTAATCGACTGAGCGAATAATATTTAAACGAAATCACTACTCCAATGCATATACGAAACGTACCT
1 TTAATCGACTGAGCGAATAATATTTAAACGAAATCACTACTCCAATGCATATACGAAACGTACCT
25985562 CATCGTTGGGATTTTATGAGCGTATTAATTGAAAATTATTACAGCAAGATCGCTCATTCCCAAAC
66 CATCGTTGGGATTTTATGAGCGTATTAATTGAAAATTATTACAGCAAGATCGCTCATTCCCAAAC
25985627 CAAGTACCTTCGGGTTTTGCTGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
131 CAAGTACCTTCGGGTTTTGCTGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
25985692 ATCATCCGAG
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
202 193 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (202 bp):
TTAATCGACTGAGCGAATAATATTTAAACGAAATCACTACTCCAATGCATATACGAAACGTACCT
CATCGTTGGGATTTTATGAGCGTATTAATTGAAAATTATTACAGCAAGATCGCTCATTCCCAAAC
CAAGTACCTTCGGGTTTTGCTGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
TTAGTAG
Found at i:25992458 original size:40 final size:40
Alignment explanation
Indices: 25992421--25992646 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
25992411 GCTACTCGTT
* *
25992421 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
25992461 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
25992501 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** *
25992541 CCAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
25992581 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
25992622 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
25992647 CATCATTCGA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:25993845 original size:56 final size:56
Alignment explanation
Indices: 25993778--25993897 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
25993768 TATTAGTTTA
25993778 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
25993834 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
25993890 TTGCCCAT
1 TTGCCCAT
25993898 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:26006586 original size:27 final size:27
Alignment explanation
Indices: 26006555--26006732 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26006545 TAAATTGTAC
26006555 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26006582 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26006608 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26006636 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26006664 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26006691 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26006718 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26006733 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26006669 original size:82 final size:81
Alignment explanation
Indices: 26006556--26006711 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26006546 AAATTGTACA
* *
26006556 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26006620 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26006637 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26006702 TGCGAGTTGA
65 TGCGAATTGA
26006712 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26006723 original size:82 final size:81
Alignment explanation
Indices: 26006552--26006732 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26006542 GATTAAATTG
* *
26006552 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26006617 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26006633 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26006697 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26006715 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26006733 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26019148 original size:49 final size:49
Alignment explanation
Indices: 26018927--26019476 Score: 813
Period size: 47 Copynumber: 11.4 Consensus size: 49
26018917 CCCTTCGGGA
* * * *
26018927 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTC-GCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGC
* *
26018974 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26019021 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26019068 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26019115 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26019164 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26019211 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26019260 CTTATCACATATATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26019311 CTTATCATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26019360 CTTATCACATATATATACACTTTCACATTCATCACAGT-GGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACA-TCGGCCATTAGGC
*
26019409 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26019456 CTTATCACATATATATACACT
1 CTTATCACATATATATACACT
26019477 CACATCACAA
Statistics
Matches: 465, Mismatches: 25, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
46 4 0.01
47 219 0.47
49 194 0.42
50 1 0.00
51 47 0.10
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26019165 original size:96 final size:96
Alignment explanation
Indices: 26018927--26019470 Score: 823
Period size: 96 Copynumber: 5.7 Consensus size: 96
26018917 CCCTTCGGGA
* * * * * * *
26018927 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTCGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
26018990 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26019021 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
*
26019084 ACTTTCACATTCATCACATCAGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
26019115 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
26019180 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
26019211 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC----ATAT
*
26019276 ATACACTTTCACATTCATCCCATCGGCCATTAGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26019311 CTTATCATATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATAT
*
26019376 ACACTTTCACATTCATCACAGT-GGCCATTCGGC
64 ACACTTTCACATTCATCACA-TCGGCCATTAGGC
26019409 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
26019471 TACACTCACA
Statistics
Matches: 415, Mismatches: 26, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
93 1 0.00
94 94 0.23
96 183 0.44
98 44 0.11
99 1 0.00
100 92 0.22
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26026475 original size:21 final size:20
Alignment explanation
Indices: 26026451--26026492 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
26026441 CTTCTCCCAC
*
26026451 GCCCGTGTGTTATGGTAGCAT
1 GCCCGTGTATTATGGTA-CAT
*
26026472 GCCCGTGTATTATTGTACAT
1 GCCCGTGTATTATGGTACAT
26026492 G
1 G
26026493 GCTAAACAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.17, C:0.19, G:0.29, T:0.36
Consensus pattern (20 bp):
GCCCGTGTATTATGGTACAT
Found at i:26037668 original size:27 final size:27
Alignment explanation
Indices: 26037638--26037783 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
26037628 ATTACTGAAA
*
26037638 TACCCTCGATTTGTAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
26037665 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
26037692 CACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
26037719 TACCCTCGATTTATAGAATTACAATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
26037746 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
26037773 TACCCTCGATT
1 TACCCTCGATT
26037784 GTGAAATTAC
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCATTT
Found at i:26037712 original size:54 final size:54
Alignment explanation
Indices: 26037639--26037783 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
26037629 TTACTGAAAT
** **
26037639 ACCCTCGATTTGTAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTC
1 ACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACAATTTC
* *
26037693 ACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACAATTTT
1 ACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACAATTTC
* *
26037747 ACCCTCGATTTACAAAATTATCGTTTTACCCTCGATT
1 ACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
26037784 GTGAAATTAC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (54 bp):
ACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACAATTTC
Found at i:26037805 original size:27 final size:27
Alignment explanation
Indices: 26037775--26037913 Score: 108
Period size: 27 Copynumber: 5.1 Consensus size: 27
26037765 TATCGTTTTA
*
26037775 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCTCGATTGTGAAATTACCAAAATAC
*
26037802 CCCT-G-TAG-GATAGAATTACCAAAATAC
1 CCCTCGATTGTG--A-AATTACCAAAATAC
* *
26037829 CCCTAC-TTTGTAAAATTACCAAAATAC
1 CCCT-CGATTGTGAAATTACCAAAATAC
* * * *
26037856 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCTCGATTGTGAAATTACCAAAATAC
* *
26037882 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTGAAATTACCAAAATAC
26037910 CCCT
1 CCCT
26037914 GACTTTCTAA
Statistics
Matches: 88, Mismatches: 14, Indels: 19
0.73 0.12 0.16
Matches are distributed among these distances:
24 1 0.01
25 2 0.02
26 5 0.06
27 73 0.83
28 5 0.06
29 2 0.02
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (27 bp):
CCCTCGATTGTGAAATTACCAAAATAC
Found at i:26037856 original size:54 final size:53
Alignment explanation
Indices: 26037773--26037914 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 53
26037763 ATTATCGTTT
* * *
26037773 TACCCTCGA-TTGTGAAATTACTAAAATACCCCTGTAGGAT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGTAGG-TGA-AATTACCAAAA
* * ** *
26037826 TACCC-CTACTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCT-GTAGGTGAAATTACCAAAA
26037880 TACCCTCAATTTGTAAAATTACCAAAATACCCCTG
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTG
26037915 ACTTTCTAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
52 1 0.01
53 6 0.08
54 62 0.84
55 5 0.07
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGTAGGTGAAATTACCAAAA
Found at i:26037956 original size:83 final size:81
Alignment explanation
Indices: 26037815--26037994 Score: 216
Period size: 83 Copynumber: 2.2 Consensus size: 81
26037805 TGTAGGATAG
* * ***
26037815 AATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 AATTACCAAAATACCCCTACTTTCTAAAATTACAAAAATACCACTGGTTTACAAAATTACCGAAA
26037880 TACCCTCAATTTGTAA
66 TACCCTCAATTTGTAA
* * * **
26037896 AATTACCAAAATACCCCTGACTTTCTAAAAATTATAAAAATACTATTGGTTTACAAAATTATTGA
1 AATTACCAAAATACCCCT-ACTTTCT-AAAATTACAAAAATACCACTGGTTTACAAAATTACCGA
* *
26037961 AATACCCTTAATTTGTAG
64 AATACCCTCAATTTGTAA
* *
26037979 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
26037995 TTATAGGATG
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 18 0.22
82 6 0.07
83 59 0.71
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCCTACTTTCTAAAATTACAAAAATACCACTGGTTTACAAAATTACCGAAA
TACCCTCAATTTGTAA
Found at i:26038051 original size:27 final size:27
Alignment explanation
Indices: 26038019--26038070 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
26038009 GACTAAAATA
26038019 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
26038046 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
26038071 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:26040031 original size:93 final size:93
Alignment explanation
Indices: 26039872--26040043 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
26039862 CGCCCATAAG
* *
26039872 CGAACTCGGACTCAACTCAACTAGCTCCGGCATTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26039937 ACGAGTTCGAATGCCTAGTTACATCTCA
66 ACGAGCTCGAATGCCTAGTTACATCTCA
* * *
26039965 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26040030 ACGAGCTCGGATGC
66 ACGAGCTCGAATGC
26040044 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGAATGCCTAGTTACATCTCA
Found at i:26040033 original size:46 final size:46
Alignment explanation
Indices: 26039865--26040039 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
26039855 TGTAACCCGC
* * *
26039865 CCATAAGCGAACTCGGACTCAACTCAACTAGCTCCGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * * * * *
26039911 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCG---GGC-ATTTGCAT
* *
26039961 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
*
26040004 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
26040040 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 57 0.54
47 27 0.26
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:26040177 original size:51 final size:51
Alignment explanation
Indices: 26040096--26040198 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
26040086 CTAAGGTTCA
*
26040096 ACGGGACCTTTTTCACAATCATGTGCCTCAACCATCTTCTACGGAATGCCG
1 ACGGGACCTTTTTCACAATCATGTGCCTCAACCATCTTCTACGCAATGCCG
* * *
26040147 ACGGGACCTTTTTCCCAATCATGTGTCTCAACCATTTTCTACGCAATGCCG
1 ACGGGACCTTTTTCACAATCATGTGCCTCAACCATCTTCTACGCAATGCCG
26040198 A
1 A
26040199 TACCGATACT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (51 bp):
ACGGGACCTTTTTCACAATCATGTGCCTCAACCATCTTCTACGCAATGCCG
Found at i:26045268 original size:46 final size:45
Alignment explanation
Indices: 26045182--26045301 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 45
26045172 GCCCATAAGC
* * * * * *
26045182 GAACTCAGACTCAACTCAATGAGCTCCGGCATTCGTATCCATGAGT
1 GAACTCGGACTCAACTCAACGAG-TTCGGCATTCGCATCCATAAAT
*
26045228 GAACTCGGACTCAACTCAACGAGTTCGGCCATTTGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCATAAAT
*
26045274 GAACTCGGACTCAACTCAACGAGCTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
26045302 ATGCTCAACC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
45 4 0.06
46 61 0.94
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCATAAAT
Found at i:26046874 original size:20 final size:20
Alignment explanation
Indices: 26046851--26046898 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
26046841 TTGATATGCT
*
26046851 ATGCACATGATATGTATAAA
1 ATGCACATGAAATGTATAAA
*
26046871 ATGCACATGAAATGTATGAA
1 ATGCACATGAAATGTATAAA
26046891 ATGCACAT
1 ATGCACAT
26046899 TGTGACAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (20 bp):
ATGCACATGAAATGTATAAA
Found at i:26048745 original size:27 final size:27
Alignment explanation
Indices: 26048714--26048891 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26048704 TGAATTGTAC
26048714 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26048741 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26048767 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26048795 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26048823 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26048850 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26048877 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26048892 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26048828 original size:82 final size:81
Alignment explanation
Indices: 26048715--26048870 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26048705 GAATTGTACA
* *
26048715 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26048779 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26048796 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26048861 TGCGAGTTGA
65 TGCGAATTGA
26048871 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26048882 original size:82 final size:81
Alignment explanation
Indices: 26048711--26048891 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26048701 GATTGAATTG
* *
26048711 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26048776 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26048792 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26048856 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26048874 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26048892 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26056836 original size:27 final size:27
Alignment explanation
Indices: 26056805--26056982 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
26056795 TAAATTGTAC
26056805 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26056832 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26056858 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
26056886 GGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26056914 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26056941 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26056968 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26056983 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26056919 original size:82 final size:81
Alignment explanation
Indices: 26056806--26056961 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
26056796 AAATTGTACA
* * *
26056806 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26056870 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26056887 GCACTAAGTGTGCAAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCAA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26056952 TGCGAGTTGA
65 TGCGAATTGA
26056962 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26056973 original size:82 final size:81
Alignment explanation
Indices: 26056802--26056981 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
26056792 GATTAAATTG
* * *
26056802 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26056867 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26056883 TGCGGCACTAAGTGTGCAAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCAA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26056947 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26056965 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
26056982 GGACTCAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26063341 original size:19 final size:20
Alignment explanation
Indices: 26063317--26063355 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26063307 AGGGGCACGG
26063317 GCTA-GGGACATGAGCGTGT
1 GCTAGGGGACATGAGCGTGT
26063336 GCTAGGGGACATGAGCGTGT
1 GCTAGGGGACATGAGCGTGT
26063356 CCCAAAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.21, C:0.15, G:0.44, T:0.21
Consensus pattern (20 bp):
GCTAGGGGACATGAGCGTGT
Found at i:26065767 original size:19 final size:19
Alignment explanation
Indices: 26065733--26065771 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
26065723 GATTTTGTAC
*
26065733 TTTGGCCCATTTTCTCCGTT
1 TTTGGCCCAGTTTCT-CGTT
26065753 TTTGGCCC-GTTTCTCGTT
1 TTTGGCCCAGTTTCTCGTT
26065771 T
1 T
26065772 CTTTCGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.03, C:0.28, G:0.18, T:0.51
Consensus pattern (19 bp):
TTTGGCCCAGTTTCTCGTT
Found at i:26077825 original size:75 final size:75
Alignment explanation
Indices: 26077702--26077851 Score: 246
Period size: 75 Copynumber: 2.0 Consensus size: 75
26077692 ATTCAAGTTT
* * * *
26077702 ATATTTTTTACTAGATTTATGAGGAACTAATCCTCCTGTGCGGGATTAACGAGTGGAGGTATGAA
1 ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAACGAGTGGAGATATGAA
26077767 TAATTAATTG
66 TAATTAATTG
* *
26077777 ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAAGGAGTGGATATATGAA
1 ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAACGAGTGGAGATATGAA
26077842 TAATTAATTG
66 TAATTAATTG
26077852 TTTTATAGGG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (75 bp):
ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAACGAGTGGAGATATGAA
TAATTAATTG
Found at i:26088335 original size:40 final size:40
Alignment explanation
Indices: 26088268--26088543 Score: 416
Period size: 40 Copynumber: 7.0 Consensus size: 40
26088258 CCTTCAGAAT
* * *
26088268 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCAGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
26088307 TTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
26088347 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
26088387 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-T
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
26088426 TTAGCCCGGA-ATTAGTCACTAGCACAAATTCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
26088466 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
26088506 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG
26088544 NNNNNNNNNN
Statistics
Matches: 217, Mismatches: 15, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.00
39 38 0.18
40 177 0.82
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:26088469 original size:119 final size:119
Alignment explanation
Indices: 26088268--26088543 Score: 416
Period size: 119 Copynumber: 2.3 Consensus size: 119
26088258 CCTTCAGAAT
* * * *
26088268 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCACA
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GGGCTTAGCCCGGATATAGTAACTCACA
*
26088331 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
64 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
26088387 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTTTAGCCCGGA-ATTAGTCACT-AGCA
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCA-CA
*
26088450 CAAATTCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
64 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
26088506 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG
26088544 NNNNNNNNNN
Statistics
Matches: 145, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
118 2 0.01
119 117 0.81
120 26 0.18
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCACACA
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:26095715 original size:39 final size:40
Alignment explanation
Indices: 26095661--26095876 Score: 210
Period size: 40 Copynumber: 5.5 Consensus size: 40
26095651 AAACCAAGTA
* * * *
26095661 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
26095700 CCTTCAGGACTTAGCCCAGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26095740 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
26095780 CCTTCGGG-TTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * * *
26095819 CCTTCGGGACTTAGCCCGGTTATCA-TCACTGGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
*
26095859 CCTTTGGG-CTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26095877 TTATCAATTC
Statistics
Matches: 151, Mismatches: 20, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 55 0.36
40 93 0.62
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26095793 original size:79 final size:78
Alignment explanation
Indices: 26095694--26095880 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 78
26095684 GCTACTTGCT
*
26095694 CAAATGCCTTCAGGACTTAGCCCAGTTATAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGGCTTAGCCC-GTTATAGTAACT-AGCACAAATGCCTTCGGGACTTAGCCCG
26095758 GTTAT-AGTAACTCGCA
63 GTTATCA-TAACTCGCA
* ** *
26095774 CAAATGCCTTCGGGTTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGCTTAGCCCGTTA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
* *
26095839 TATCATCACTGGCA
65 TATCATAACTCGCA
* *
26095853 AAAATGCCTTTGGGCTTAGCCCGGTTAT
1 CAAATGCCTTCGGGCTTAGCCC-GTTAT
26095881 CAATTCGAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 74 0.81
80 14 0.15
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGTTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTT
ATCATAACTCGCA
Found at i:26095880 original size:39 final size:41
Alignment explanation
Indices: 26095694--26095882 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 41
26095684 GCTACTTGCT
* * *
26095694 CAAATGCCTTCAGGACTTAGCCCAGTTAT-AGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATCAGTCACT-AGCA
* *
26095734 CAAATGCCTTCGGGACTTAGCCCGGTTAT-AGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATCAGTCACTAGCA
* * *
26095774 CAAATGCCTTCGGG-TTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATCAGTCACTAGCA
*
26095813 CAAATGCCTTCGGGACTTAGCCCGGTTATCA-TCACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATCAGTCACTAGCA
* *
26095853 AAAATGCCTTTGGG-CTTAGCCCGGTTATCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATCA
26095883 ATTCGAATAT
Statistics
Matches: 132, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.02
39 48 0.36
40 79 0.60
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATCAGTCACTAGCA
Found at i:26115979 original size:43 final size:42
Alignment explanation
Indices: 26115921--26116068 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 42
26115911 CAATGCCGAC
*
26115921 GTCCCAGAC-GTGGTCTTACATGTAACTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAACTC-ATATCGATGCCTAT
*
26115964 GTCCCAGACAGGGTCTTACATG-AAATCATATACGATG-CTGAT
1 GTCCCAGACAGGGTCTTACATGTAACTCATAT-CGATGCCT-AT
* * *
26116006 GTCCCAGACATGGTCTTATATGTTAATCTCA-ATCGA-GCTCTGT
1 GTCCCAGACAGGGTCTTACATG-TAA-CTCATATCGATGC-CTAT
*
26116049 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
26116069 CGATGTCTCA
Statistics
Matches: 89, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
41 6 0.07
42 31 0.35
43 42 0.47
44 7 0.08
45 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGTAACTCATATCGATGCCTAT
Found at i:26133390 original size:33 final size:33
Alignment explanation
Indices: 26133351--26133415 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
26133341 TATCAGTGGG
*
26133351 GTATGGTTCAGATTGTATTCCATTGTAGGCTAT
1 GTATGGTTCAGATTGTATTCCATCGTAGGCTAT
*
26133384 GTATGGTTTAGATTGTATTCCATCGTAGGCTA
1 GTATGGTTCAGATTGTATTCCATCGTAGGCTA
26133416 GACTCTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.42
Consensus pattern (33 bp):
GTATGGTTCAGATTGTATTCCATCGTAGGCTAT
Found at i:26136462 original size:45 final size:45
Alignment explanation
Indices: 26136398--26136487 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
26136388 TTTTTAACAT
* *
26136398 AGTCCTTTATGTTAAACCCACTCTATGTAGTTGGTGCCTGTGGGC
1 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
26136443 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
1 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
26136488 TACTTATATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33
Consensus pattern (45 bp):
AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
Found at i:26139866 original size:23 final size:23
Alignment explanation
Indices: 26139836--26139884 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
26139826 AAAACAGTTC
26139836 ATACTCATTGATGGTAGAAAGCA
1 ATACTCATTGATGGTAGAAAGCA
26139859 ATACTCATTGATGGTAGAAAGCA
1 ATACTCATTGATGGTAGAAAGCA
26139882 ATA
1 ATA
26139885 TCTACATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (23 bp):
ATACTCATTGATGGTAGAAAGCA
Found at i:26140022 original size:29 final size:31
Alignment explanation
Indices: 26139981--26140044 Score: 96
Period size: 29 Copynumber: 2.1 Consensus size: 31
26139971 ATAATCTATA
* *
26139981 TTTTATAATTTTTAAAGAATTAAATTA-AAT
1 TTTTATAATTTTTAAAAAATTAAAATATAAT
26140011 TTTTATAA-TTTTAAAAAATTAAAATATAAT
1 TTTTATAATTTTTAAAAAATTAAAATATAAT
26140041 TTTT
1 TTTT
26140045 TATTTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
TTTTATAATTTTTAAAAAATTAAAATATAAT
Found at i:26142014 original size:29 final size:29
Alignment explanation
Indices: 26141964--26142019 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
26141954 AGGAGAATAA
26141964 GTTGTGTTAGGATTTGAGAAAAAATTAGG
1 GTTGTGTTAGGATTTGAGAAAAAATTAGG
*
26141993 GTTGTGTTTAGGGTTTGA-AAAAAATTA
1 GTTGTG-TTAGGATTTGAGAAAAAATTA
26142020 ATTAAGAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.38
Consensus pattern (29 bp):
GTTGTGTTAGGATTTGAGAAAAAATTAGG
Found at i:26142397 original size:22 final size:20
Alignment explanation
Indices: 26142369--26142408 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
26142359 TGACATGTTA
26142369 TTTTTATTATTTTAATATAAAT
1 TTTTTATT-TTTT-ATATAAAT
26142391 TTTTTATTTTTTATATAA
1 TTTTTATTTTTTATATAA
26142409 GTAAAAGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTATTTTTTATATAAAT
Found at i:26145051 original size:49 final size:49
Alignment explanation
Indices: 26144961--26145135 Score: 160
Period size: 49 Copynumber: 3.6 Consensus size: 49
26144951 CTTATTGTGT
*
26144961 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATG-AGA
1 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGA-GCAAA
* * * * *
26145010 GTCAGTGTAACACCTATTTGGGACATGGCATTGGC-CTCGATATAGCAAA
1 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACAC-CGATAGAGCAAA
* * * *** * *
26145059 GTCAGTGTAAGACATGTCTGGGACATGGCATCAACTTTGAT-GTGC-TA
1 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGAGCAAA
*
26145106 GCCAGTGTAAGACCATGTTTGGGACATGGC
1 GTCAGTGTAAGACC-TGTTTGGGACATGGC
26145136 GTTGGTATTT
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
47 13 0.13
48 18 0.18
49 70 0.69
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGAGCAAA
Found at i:26146943 original size:48 final size:48
Alignment explanation
Indices: 26146891--26147418 Score: 376
Period size: 48 Copynumber: 11.0 Consensus size: 48
26146881 TGGACTATAG
* *
26146891 CGATATAAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCT
* * * * * *
26146939 CGATAT--GTGTCAATGTAAGACAATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCT
* * *
26146985 CGATAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGTACC-
1 CGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-G-ACCT
* * * * * * *
26147032 GGTTTATGAGAGTCAGTGTAAGATCATGT-TTGGAACATGGCATCGGCAT
1 CG-ATATGAGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGACCT
* * * * * * * *
26147081 TGTTATGTGAACCAATATAAGACCATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCT
* * *
26147129 CAATATGAGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGACAT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGACCT
* * * *
26147177 TGTTAT-ATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACACT
1 CGATATGA-GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC-CT
* ** *
26147226 -GATGTATGAGAGCCAGTGTAAAACCATGTCCGGGACATGGCATCAACCT
1 CGA--TATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCT
* * * * * * *
26147275 CAATATGCGATCTAGTGTAAGACCATGT-TTGGAACATGGCATCGGCAT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGACCT
* * * * * *
26147323 TGTTAT-ATGTGTCAGTGTAAGACCATGTCTAGGGCATGGCATCGACAT
1 CGATATGA-GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCT
* * * *
26147371 TGATGTATGAGAGCCAGTGGAAGACCATGTCCAGAACATGGCATCGAC
1 CGA--TATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
26147419 ATTTTACCCT
Statistics
Matches: 382, Mismatches: 76, Indels: 42
0.76 0.15 0.08
Matches are distributed among these distances:
46 74 0.19
47 8 0.02
48 182 0.48
49 17 0.04
50 99 0.26
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
CGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACCT
Found at i:26147276 original size:146 final size:144
Alignment explanation
Indices: 26146903--26147416 Score: 569
Period size: 146 Copynumber: 3.6 Consensus size: 144
26146893 ATATAAGAGC
* * * *
26146903 CAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCGA-TAT--GTGTCAATGTAAGACAATG
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACACT-GATTATGAGAGCCAATGTAAGACCATG
* * * * * *
26146964 TCTGGGACATGGCATCGGCCTCGATAT-GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAG
65 TCCGGGACATGGCATCGGCCTCAATATGGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-G
** *
26147028 TAC-CGGTT-TATGAGAGT
129 -ACATTGTTATAT--GTGT
* * * * * * *
26147045 CAGTGTAAGATCATGT-TTGGAACATGGCATCGGCATTG-TTATGTGAACCAATATAAGACCATG
1 CAGTGTAAGACCATGTCTAGG-ACATGGCATCGACACTGATTATGAGAGCCAATGTAAGACCATG
*
26147108 TCTGGGACATGGCATCGGCCTCAATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
65 TCCGGGACATGGCATCGGCCTCAATATG-GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
26147173 ACATTGTTATATGTGT
129 ACATTGTTATATGTGT
* *
26147189 CAGTGTAAGACCATGTCTAGGACATGGCATCGACACTGATGTATGAGAGCCAGTGTAAAACCATG
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACACTGAT-TATGAGAGCCAATGTAAGACCATG
** * *
26147254 TCCGGGACATGGCATCAACCTCAATATGCGATCTAGTGTAAGACCATGTTTGGAACATGGCATCG
65 TCCGGGACATGGCATCGGCCTCAATATG-GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
*
26147319 GCATTGTTATATGTGT
129 ACATTGTTATATGTGT
* * * *
26147335 CAGTGTAAGACCATGTCTAGGGCATGGCATCGACATTGATGTATGAGAGCCAGTGGAAGACCATG
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACACTGAT-TATGAGAGCCAATGTAAGACCATG
* *
26147400 TCCAGAACATGGCATCG
65 TCCGGGACATGGCATCG
26147417 ACATTTTACC
Statistics
Matches: 321, Mismatches: 39, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
141 3 0.01
142 32 0.10
143 1 0.00
144 75 0.23
145 8 0.02
146 202 0.63
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (144 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGACACTGATTATGAGAGCCAATGTAAGACCATGT
CCGGGACATGGCATCGGCCTCAATATGGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAC
ATTGTTATATGTGT
Found at i:26147984 original size:21 final size:19
Alignment explanation
Indices: 26147952--26147990 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
26147942 CCCTTGTCTT
*
26147952 AAATTTAGAAAATCATTAA
1 AAATTTAGAAAATAATTAA
26147971 AAATTGTATGAAAATAATTA
1 AAATT-TA-GAAAATAATTA
26147991 TAGGTTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (19 bp):
AAATTTAGAAAATAATTAA
Found at i:26150706 original size:46 final size:47
Alignment explanation
Indices: 26150482--26150734 Score: 323
Period size: 48 Copynumber: 5.3 Consensus size: 47
26150472 TGTATTTATT
* **
26150482 TAATTAGATTA-ATTGCAACATTAAAACTTGGAACAAACTTTGTGGTCA
1 TAATTAGA-TACATTACAACATTAAAACTTGGAACAAACTTTGTAAT-A
* *
26150530 TAAATTAGAAACATTACAACATTAAAACTTGGAACAAAATTTGTAATA
1 T-AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
*
26150578 TAAATTAAATACATTACAACATTAAAACTTGGAACAAA-TTTCGTAATA
1 T-AATTAGATACATTACAACATTAAAACTTGGAACAAACTTT-GTAATA
*
26150626 TAATTTAGGTACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
1 TAA-TTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
** *
26150674 T-ATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATT
1 TAATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
*
26150720 TAAGTTAGGTACATT
1 TAA-TTAGATACATT
26150735 GGATTACATA
Statistics
Matches: 184, Mismatches: 14, Indels: 14
0.87 0.07 0.07
Matches are distributed among these distances:
46 41 0.22
47 7 0.04
48 95 0.52
49 41 0.22
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (47 bp):
TAATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
Found at i:26152117 original size:43 final size:43
Alignment explanation
Indices: 26152023--26152177 Score: 125
Period size: 43 Copynumber: 3.6 Consensus size: 43
26152013 TGAGTTGTGC
* ** * *
26152023 TTACATGTAAGACCATGTTTGGGACATTGGCATTGTTTTGAGA
1 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATTGAGA
26152066 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATT-ATGA
1 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATTGA-GA
** * * * * * *
26152109 TTTTGTGTAAGACCCTGTCTGGAACAGTGACATCG-ATATGTGA
1 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTAT-TGAGA
* * * *
26152152 TAACATGTAAGACCATATCTGGGACA
1 TTACGTGTAAGACCATGTCAGGGACA
26152178 CAACATTGTA
Statistics
Matches: 89, Mismatches: 20, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
42 3 0.03
43 86 0.97
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATTGAGA
Found at i:26169574 original size:27 final size:26
Alignment explanation
Indices: 26169530--26169581 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26169520 CTCGCTACAA
*
26169530 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26169557 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
26169582 GCAGCCACGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26177439 original size:30 final size:30
Alignment explanation
Indices: 26177403--26177464 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
26177393 CGCACACATA
26177403 TATCAGAATCACAAATCGATGCCATGGTCT
1 TATCAGAATCACAAATCGATGCCATGGTCT
26177433 TATCAGAATCACAAATCGATGCCATGGTCT
1 TATCAGAATCACAAATCGATGCCATGGTCT
26177463 TA
1 TA
26177465 CTCATACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (30 bp):
TATCAGAATCACAAATCGATGCCATGGTCT
Found at i:26179987 original size:43 final size:43
Alignment explanation
Indices: 26179911--26180061 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
26179901 GGTTATCGAG
** * *
26179911 TTATGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTA
1 TTATGATTACATGTAAGACCATGTCAGGAACATTGGCATCGTA
* *
26179954 TTGA-GATTACGTGTAAGACTATGTCAGGAACATTGGCATCGTA
1 TT-ATGATTACATGTAAGACCATGTCAGGAACATTGGCATCGTA
* * * *
26179997 TTATGATTTCATGTAAGACCCTGTCTAGG-ACAGTGGCATC-AA
1 TTATGATTACATGTAAGACCATGTC-AGGAACATTGGCATCGTA
* *
26180039 TATGTGATAACATGTAAGACCAT
1 T-TATGATTACATGTAAGACCAT
26180062 ATCTGGGATA
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 3 0.03
43 81 0.92
44 4 0.05
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
TTATGATTACATGTAAGACCATGTCAGGAACATTGGCATCGTA
Found at i:26184148 original size:34 final size:34
Alignment explanation
Indices: 26184105--26184183 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 34
26184095 CAGTGACGTC
* *
26184105 CAGTATTAGT-TAGGGCCATAGCCCATTACAGTAT
1 CAGTATTAGTGT-GGGCCATAGCCCAATACAGTAA
*
26184139 CAGTATTAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAGTATTAGTGTGGGCCATAGCCCAATACAGTAA
*
26184173 CAGTAGTAGTG
1 CAGTATTAGTG
26184184 ATGCAATCAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (34 bp):
CAGTATTAGTGTGGGCCATAGCCCAATACAGTAA
Found at i:26199853 original size:29 final size:29
Alignment explanation
Indices: 26199819--26199876 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26199809 CGCTAAATAA
26199819 ACTATATAATACTAAAAAAATAATTTATT
1 ACTATATAATACTAAAAAAATAATTTATT
*
26199848 ACTATATAATACTAACAAAATAATTTATT
1 ACTATATAATACTAAAAAAATAATTTATT
26199877 CTCATCATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (29 bp):
ACTATATAATACTAAAAAAATAATTTATT
Found at i:26206238 original size:22 final size:22
Alignment explanation
Indices: 26206201--26206244 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26206191 TAGGAATTAG
26206201 GGTGTGTCGTTTTCTCT-TTTT
1 GGTGTGTCGTTTTCTCTCTTTT
*
26206222 GGTGTAGTCTTTTTCTCTCTTTT
1 GGTGT-GTCGTTTTCTCTCTTTT
26206245 CTTTTCCAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.02, C:0.16, G:0.20, T:0.61
Consensus pattern (22 bp):
GGTGTGTCGTTTTCTCTCTTTT
Found at i:26207451 original size:9 final size:10
Alignment explanation
Indices: 26207439--26207495 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
26207429 TATGTGGGAT
26207439 ATGATAT-AC
1 ATGATATGAC
*
26207448 ATGAT-TGAG
1 ATGATATGAC
26207457 ATGATATGCAC
1 ATGATATG-AC
*
26207468 ATGATATG-T
1 ATGATATGAC
26207477 ATGATATGCAC
1 ATGATATG-AC
26207488 ATGATATG
1 ATGATATG
26207496 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (10 bp):
ATGATATGAC
Found at i:26207471 original size:20 final size:20
Alignment explanation
Indices: 26207457--26207512 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
26207447 CATGATTGAG
26207457 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
26207477 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
26207497 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
26207513 GAACTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:26207473 original size:11 final size:11
Alignment explanation
Indices: 26207457--26207512 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
26207447 CATGATTGAG
26207457 ATGATATGCAC
1 ATGATATGCAC
*
26207468 ATGATATG--T
1 ATGATATGCAC
26207477 ATGATATGCAC
1 ATGATATGCAC
*
26207488 ATGATATG--T
1 ATGATATGCAC
*
26207497 ATGAAATGCAC
1 ATGATATGCAC
26207508 ATGAT
1 ATGAT
26207513 GAACTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26207648 original size:52 final size:51
Alignment explanation
Indices: 26207564--26207684 Score: 190
Period size: 52 Copynumber: 2.4 Consensus size: 51
26207554 GGAAGTGCAG
*
26207564 AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTTATGCTCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTT-TGCCCCAGTTTACCGAA
* * *
26207616 AAGGGCTTATGCCCTAGTTTATTGAAATGGGCTTTGCCCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTTTGCCCCAGTTTACCGAA
26207667 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
26207685 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 9 0.14
51 24 0.38
52 31 0.48
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (51 bp):
AAGGGCTTATGCCCCAGTTTATGGAAAAGGGCTTTGCCCCAGTTTACCGAA
Found at i:26207659 original size:25 final size:26
Alignment explanation
Indices: 26207564--26207684 Score: 165
Period size: 26 Copynumber: 4.7 Consensus size: 26
26207554 GGAAGTGCAG
**
26207564 AAGGGCTTATGCCCCAGTTTATGGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
*
26207590 AAGGGCTTATGCTCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
* **
26207616 AAGGGCTTATGCCCTAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
*
26207642 ATGGGCTT-TGCCCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTACCGAA
26207667 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
26207685 ATTAAAAGAG
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
25 31 0.37
26 52 0.63
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (26 bp):
AAGGGCTTATGCCCCAGTTTACCGAA
Found at i:26210200 original size:15 final size:15
Alignment explanation
Indices: 26210180--26210244 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
26210170 ACTATGCTAA
26210180 AAATAATAAGAAATG
1 AAATAATAAGAAATG
*
26210195 AAATAA-AATAAATG
1 AAATAATAAGAAATG
* *
26210209 AAA-ATTAAATAAATG
1 AAATAAT-AAGAAATG
* *
26210224 AAA-AATGAGAAATC
1 AAATAATAAGAAATG
26210238 AAATAAT
1 AAATAAT
26210245 CAAACATGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
13 1 0.02
14 18 0.44
15 22 0.54
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.22
Consensus pattern (15 bp):
AAATAATAAGAAATG
Found at i:26219609 original size:20 final size:20
Alignment explanation
Indices: 26219584--26219625 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
26219574 TTTGATATAC
26219584 GTTTGGTTCAAACTATCGGT
1 GTTTGGTTCAAACTATCGGT
*
26219604 GTTTGGTTCAAACTATCTGT
1 GTTTGGTTCAAACTATCGGT
26219624 GT
1 GT
26219626 GAACAATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.43
Consensus pattern (20 bp):
GTTTGGTTCAAACTATCGGT
Found at i:26230675 original size:14 final size:14
Alignment explanation
Indices: 26230652--26230692 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
26230642 TGTTAGAGGT
26230652 AAAATAAAAAATAAA
1 AAAAT-AAAAATAAA
26230667 AAAATAAAAATAAA
1 AAAATAAAAATAAA
* *
26230681 GAAATCAAAATA
1 AAAATAAAAATA
26230693 CGTTAGTGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (14 bp):
AAAATAAAAATAAA
Found at i:26233790 original size:13 final size:12
Alignment explanation
Indices: 26233771--26233802 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
26233761 GGTTGTTTAT
26233771 TAACTAATTAAC
1 TAACTAATTAAC
26233783 TAAACTAATTAAC
1 T-AACTAATTAAC
26233796 TAACTAA
1 TAACTAA
26233803 ACTAAAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (12 bp):
TAACTAATTAAC
Found at i:26242131 original size:42 final size:42
Alignment explanation
Indices: 26242079--26242192 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
26242069 GGGTTACTGA
**
26242079 ATTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAG
1 ATTACGTGTAAGACCATATCTGGGATATGGCATCGATACAAG
** * * *
26242121 ATTTTGTGTAAGACCATAGCTAGGCTATTGGCATCGATACAAG
1 ATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATACAAG
*
26242164 ATTACATGTAAGACCATATCTGGGATATG
1 ATTACGTGTAAGACCATATCTGGGATATG
26242193 ATATTGGTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
ATTACGTGTAAGACCATATCTGGGATATGGCATCGATACAAG
Found at i:26243198 original size:31 final size:31
Alignment explanation
Indices: 26243154--26243239 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
26243144 TCAATCTCAG
*
26243154 CATAT-ACTAGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
26243184 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
26243215 CATATCACTGGGTCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
26243240 TATAACAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:26243515 original size:24 final size:25
Alignment explanation
Indices: 26243458--26243526 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 25
26243448 TCTTTTAATT
*
26243458 ACTGGGGCAAAATCCCTTTTCGGTAA
1 ACTGGGGC-AAAGCCCTTTTCGGTAA
*
26243484 ACTAGGGCAAAGCCCTTTTCGGT-A
1 ACTGGGGCAAAGCCCTTTTCGGTAA
*
26243508 ACTGGGGCATAGCCCTTTT
1 ACTGGGGCAAAGCCCTTTT
26243527 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 18 0.46
25 14 0.36
26 7 0.18
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (25 bp):
ACTGGGGCAAAGCCCTTTTCGGTAA
Found at i:26243678 original size:24 final size:24
Alignment explanation
Indices: 26243636--26243681 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26243626 ATAATTAAAC
* * *
26243636 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGAAAAATAGTCATTTTA
26243660 CCTAGGGGAAAAATAGTCATTT
1 CCTAGGGGAAAAATAGTCATTT
26243682 CCATACTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (24 bp):
CCTAGGGGAAAAATAGTCATTTTA
Found at i:26247177 original size:38 final size:38
Alignment explanation
Indices: 26247135--26247210 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
26247125 TACGAGTGAG
26247135 AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
1 AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
* *
26247173 AATTTGTGAGATTGAGCCAGTATCTATGAGAATGTGTC
1 AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
26247211 TCGACCGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (38 bp):
AATTTGTGAGATTGAGCCAGTATCCACGAGAATGTGTC
Found at i:26253410 original size:49 final size:48
Alignment explanation
Indices: 26253357--26253687 Score: 331
Period size: 49 Copynumber: 6.7 Consensus size: 48
26253347 CTGGTACGCA
*
26253357 TAGTAGCCTGCACTTAGTACTACACATGAAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACCAATTATCCGGTACACG
* * ** * *
26253406 TAGTAGCCTACACTTAGGACTACACACAT-GACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACT--ACACATGGACC-AATTATCCGGTACACG
*
26253456 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACCAATTATCCGGTACACG
* * * * *
26253505 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACC-AATTATCCGGTACACG
* * * * ** * * *
26253555 TAGTAGCCTGCAGTTAGTATTACATACGTGATTGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATG-GA-CCAA-TTATCCGGTACACG
*
26253606 TAGTAGCCTGCACTTAGTACTGCACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-GACCAATTATCCGGTACACG
*
26253655 TAGTAGCCTGCACTTAGTATTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATG-GACC
26253688 TCACAATAGA
Statistics
Matches: 230, Mismatches: 44, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
48 6 0.03
49 105 0.46
50 78 0.34
51 41 0.18
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGGACCAATTATCCGGTACACG
Found at i:26253519 original size:99 final size:99
Alignment explanation
Indices: 26253357--26253687 Score: 414
Period size: 99 Copynumber: 3.3 Consensus size: 99
26253347 CTGGTACGCA
** * *
26253357 TAGTAGCCTGCACTTAGTACTACACATGAAACCAATTATCCGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
* * *
26253422 GGACTACACACATGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAATCATCTGATACACG
* *
26253456 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
26253521 GTACTACACACGTGACCTAATCATCTGATACACG
66 GTACTACACACGTGACCTAATCATCTGATACACG
* * * * ** * *
26253555 TAGTAGCCTGCAGTTAGTATTACATACGTGATTGAAGTTA-TCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATTC-GGTACACGTAGTAGCCTGCAC
* * * * *
26253619 TTAGTACTGCACATGTGACC-AATTATCCGGTACACG
63 TTAGTACTACACACGTGACCTAATCATCTGATACACG
*
26253655 TAGTAGCCTGCACTTAGTATTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
26253688 TCACAATAGA
Statistics
Matches: 201, Mismatches: 28, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
99 117 0.58
100 45 0.22
101 39 0.19
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTAATCATCTGATACACG
Found at i:26255348 original size:42 final size:43
Alignment explanation
Indices: 26255293--26255402 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
26255283 GATTTGAGAT
* *
26255293 TTACGTGTAAGACCATGTCTGGGACA-TCAGTATC-ATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGT-AGCATCGATATTTGA
* * * *
26255335 TTTCATGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
* * *
26255378 TTACATGTAATACCACGTTTGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
26255403 GTATCGTATT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
42 26 0.48
43 28 0.52
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGA
Found at i:26255375 original size:43 final size:43
Alignment explanation
Indices: 26255238--26255387 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 43
26255228 ACATAAGATT
* *
26255238 TCGATATGTGATTATGA-GTAAGACCAC-GTCTAGGAC-GTTGGCA
1 TCGATATTTGATT-TCATGTAAGACC-CTGTCTAGGACAG-TGGCA
* * * * * *
26255281 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACA-TCAGTA
1 TCGATATT-TGATTT-CATGTAAGACCCTGTCTAGGACAGT-GGCA
26255325 TC-ATATTTGATTTCATGTAAGACCCTGTCTAGGACAGTGGCA
1 TCGATATTTGATTTCATGTAAGACCCTGTCTAGGACAGTGGCA
*
26255367 TCGATATTTGATTACATGTAA
1 TCGATATTTGATTTCATGTAA
26255388 TACCACGTTT
Statistics
Matches: 83, Mismatches: 15, Indels: 18
0.72 0.13 0.16
Matches are distributed among these distances:
42 26 0.31
43 35 0.42
44 22 0.27
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCCTGTCTAGGACAGTGGCA
Found at i:26258274 original size:56 final size:56
Alignment explanation
Indices: 26258212--26258419 Score: 258
Period size: 56 Copynumber: 3.7 Consensus size: 56
26258202 CAGACAGGGT
* * * * * *
26258212 CTTACTCGTAAACACATATCAGAATCACATATCGATACAAACGTATGAAATGTGGA
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGA
* * *
26258268 CTTACTCACACACATATATTAGAATCACATA-CTGATGCCAACGTATTAAACGTGGA
1 CTTACTCGCACACATATATCAGAATCACATATC-GATGCCAACGTATTAAATGTGGA
* * *
26258324 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTTAATGTGGT
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGA
* *
26258380 CTTACTAGCACACATATATCA-AAGTCACATATCAATGCCA
1 CTTACTCGCACACATATATCAGAA-TCACATATCGATGCCA
26258420 CATATTCTTC
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
55 3 0.02
56 127 0.97
57 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGA
Found at i:26259404 original size:13 final size:13
Alignment explanation
Indices: 26259386--26259415 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26259376 CTGAACTAGG
26259386 TTTTCCTTTCCTA
1 TTTTCCTTTCCTA
*
26259399 TTTTCCTTTCTTA
1 TTTTCCTTTCCTA
26259412 TTTT
1 TTTT
26259416 TGATTTCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCCTTTCCTA
Found at i:26260581 original size:64 final size:64
Alignment explanation
Indices: 26260503--26260761 Score: 500
Period size: 64 Copynumber: 4.0 Consensus size: 64
26260493 TTGAAAAGTG
*
26260503 AATACTCATAATTAATGTGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
1 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
26260567 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
1 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
26260631 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
1 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
*
26260695 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTAATC
1 AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
26260759 AAT
1 AAT
26260762 TATAATGGAG
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 193 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (64 bp):
AATACTCATAATTAATATGTATGTTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTATTC
Found at i:26273300 original size:28 final size:28
Alignment explanation
Indices: 26273230--26273324 Score: 111
Period size: 29 Copynumber: 3.4 Consensus size: 28
26273220 GAAAGCATGT
*
26273230 ATATGAATGTGATTTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGG-C
*
26273259 ATACGAATGTGATTTGGGCCTAATGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGC
** *
26273287 ATATGAATAAGA-TTGGGCCTAGTGGGGC
1 ATATGAATGTGATTTGGGCCTAAT-GGGC
*
26273315 ATATGCATGT
1 ATATGAATGT
26273325 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
27 10 0.18
28 21 0.38
29 25 0.45
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTTGGGCCTAATGGGC
Found at i:26278246 original size:27 final size:27
Alignment explanation
Indices: 26278216--26278269 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
26278206 TGAAATGAGC
26278216 AAGTTTGTATGTAAATAATATTTCGGT
1 AAGTTTGTATGTAAATAATATTTCGGT
26278243 AAGTTTGTATGTAAATAATATTTCGGT
1 AAGTTTGTATGTAAATAATATTTCGGT
26278270 TGTTTTTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (27 bp):
AAGTTTGTATGTAAATAATATTTCGGT
Found at i:26278754 original size:50 final size:50
Alignment explanation
Indices: 26278687--26278817 Score: 138
Period size: 50 Copynumber: 2.6 Consensus size: 50
26278677 TTAACTTCGA
* ** *
26278687 TCACGTGTGTAGTACTAAGCGTAGGCTACTACGTGTATTAGATGGTTAAG
1 TCACGTGTGTAGTACTAAGCGTAGGCTACTACATGTACCAGATGGATAAG
*** * * *
26278737 TCACGTGTGTAGTACTAAGTACAAGCTACTACATGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGCGTAGGCTACTACATGTACCAGATGGATAAG
* *
26278787 TCGCATGTGTAGTACTAA-CTGTAGGCTACTA
1 TCACGTGTGTAGTACTAAGC-GTAGGCTACTA
26278818 TGCGTACCAG
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGCGTAGGCTACTACATGTACCAGATGGATAAG
Found at i:26278765 original size:141 final size:141
Alignment explanation
Indices: 26278505--26278786 Score: 375
Period size: 141 Copynumber: 2.0 Consensus size: 141
26278495 CCGCATGTGT
* * * *
26278505 AGTACTAAGTGCAGGCTACTATGCGTACCCATTAACTTTGATCATGTGTATAGTACTAAATACAG
1 AGTACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTATAGTACTAAACACAG
* * * * * ** *
26278570 GCTATTATGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAGGTTCAGGCTACTATGTGTACT
66 GCTACTACGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAAGTACAAGCTACTACATGTACC
26278635 AGAATGATAGG
131 AGAATGATAGG
* * * **
26278646 AGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGCGTAG
1 AGTACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTATAGTACTAAACACAG
* * *
26278711 GCTACTACGTGTATTAGATGGTTAAGTCACGTGTGTAGTACTAAGTACAAGCTACTACATGTACC
66 GCTACTACGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAAGTACAAGCTACTACATGTACC
*
26278776 AGATTGATAGG
131 AGAATGATAGG
26278787 TCGCATGTGT
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
141 120 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (141 bp):
AGTACTAAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACGTGTATAGTACTAAACACAG
GCTACTACGTGTATCAGATGGTTAAGTCACCTGTGTAATACTAAGTACAAGCTACTACATGTACC
AGAATGATAGG
Found at i:26283073 original size:13 final size:13
Alignment explanation
Indices: 26283055--26283089 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
26283045 AACACTCTAT
26283055 GATGCAAGGGAGA
1 GATGCAAGGGAGA
*
26283068 GATGCATGGGAGA
1 GATGCAAGGGAGA
*
26283081 GATACAAGG
1 GATGCAAGG
26283090 ACCTTTTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.43, T:0.11
Consensus pattern (13 bp):
GATGCAAGGGAGA
Found at i:26292886 original size:39 final size:39
Alignment explanation
Indices: 26292827--26292909 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
26292817 ATCTCATAAT
*
26292827 ATAGTATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
1 ATAGAATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
26292866 ATAGAATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
1 ATAGAATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
26292905 ATAGA
1 ATAGA
26292910 CTCATTAAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (39 bp):
ATAGAATTCCTTTGCTTGCTCTGTTTTTGTTATATGAAA
Found at i:26298469 original size:39 final size:39
Alignment explanation
Indices: 26298283--26298451 Score: 284
Period size: 39 Copynumber: 4.3 Consensus size: 39
26298273 ACTCAGTGAT
*
26298283 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
* * *
26298322 GAATTATATCCGAACTTAAGGTCTGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
26298361 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
*
26298400 GAATTATGTCAGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
*
26298439 GAATTACGTCCGG
1 GAATTATGTCCGG
26298452 GCTAAAGTCC
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 122 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
Found at i:26303080 original size:15 final size:16
Alignment explanation
Indices: 26303053--26303087 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
26303043 ACTATATTAC
*
26303053 AAATAATAAGAAAAGG
1 AAATAATAAGAAAAGA
26303069 AAATAA-AAGAAAAGA
1 AAATAATAAGAAAAGA
26303084 AAAT
1 AAAT
26303088 TAAATAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.11
Consensus pattern (16 bp):
AAATAATAAGAAAAGA
Found at i:26303085 original size:20 final size:20
Alignment explanation
Indices: 26303060--26303101 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26303050 TACAAATAAT
26303060 AAGAAAAGGAAATAAAAGAA
1 AAGAAAAGGAAATAAAAGAA
** *
26303080 AAGAAAATTAAATAAATGAA
1 AAGAAAAGGAAATAAAAGAA
26303100 AA
1 AA
26303102 ATGAGAAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (20 bp):
AAGAAAAGGAAATAAAAGAA
Found at i:26306292 original size:16 final size:16
Alignment explanation
Indices: 26306252--26306294 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
26306242 AAAAATTATA
26306252 AAATAAGAA-AAAAAAG
1 AAATAA-AAGAAAAAAG
*
26306268 AAAT-TAAGAAAAAAG
1 AAATAAAAGAAAAAAG
26306283 AAATAAAAGAAA
1 AAATAAAAGAAA
26306295 CAAAAGGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (16 bp):
AAATAAAAGAAAAAAG
Found at i:26307630 original size:18 final size:17
Alignment explanation
Indices: 26307597--26307634 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
26307587 CTTGTGGTAA
26307597 TTTTGAAAACGTTTGTCT
1 TTTTGAAAACGTTTGT-T
26307615 TTTTGAAAAC-TCTTGTT
1 TTTTGAAAACGT-TTGTT
26307632 TTT
1 TTT
26307635 CCTACCTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.21, C:0.11, G:0.13, T:0.55
Consensus pattern (17 bp):
TTTTGAAAACGTTTGTT
Found at i:26308340 original size:27 final size:27
Alignment explanation
Indices: 26308294--26308348 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
26308284 ATATATCACA
*
26308294 TAGGGGCAAAACAATTATTTTATCAAT
1 TAGGGGCAAAACAATTATTTTACCAAT
*
26308321 TAGGGGCAAAA-TATTCATTTTACCAAT
1 TAGGGGCAAAACAATT-ATTTTACCAAT
26308348 T
1 T
26308349 TGAGGGTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 22 0.88
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (27 bp):
TAGGGGCAAAACAATTATTTTACCAAT
Found at i:26316173 original size:6 final size:6
Alignment explanation
Indices: 26316162--26316433 Score: 226
Period size: 6 Copynumber: 44.8 Consensus size: 6
26316152 AACCAAAATG
* *
26316162 AGAATC AGAATC AGAATC AGTAA-C AGAATT AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
26316210 AGTAA-C AGAATC AGAATC AGAATC AGAATC A-ATATT AGTAAT- AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC
* * *
26316258 AGAATT AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* *
26316307 AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATTAC ATG-A-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAA-T-C A-GAATC
* * *
26316356 AGAATC AGAATC AGAATC AGTATT ACTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC A-GAATC AGAATC AGAATC AGAATC
26316404 AGAATTAC ATG-A-C AGAATC AGAATC AGAAT
1 AGAA-T-C A-GAATC AGAATC AGAATC AGAAT
26316434 GTGAATGCAA
Statistics
Matches: 218, Mismatches: 21, Indels: 54
0.74 0.07 0.18
Matches are distributed among these distances:
4 2 0.01
5 20 0.09
6 174 0.80
7 11 0.05
8 9 0.04
9 2 0.01
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:26316177 original size:30 final size:29
Alignment explanation
Indices: 26316141--26316305 Score: 134
Period size: 30 Copynumber: 5.3 Consensus size: 29
26316131 AAGAAACATT
* * *
26316141 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
* *
26316171 ATCAGAATCAGTAACAGAATTAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
26316201 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* *
26316231 ATCAGAATCAATATTAGTAATAGAATCAGAATTAGA
1 ATCAG-----A-ATT-GTAACAGAATCAGAATCAGA
*
26316267 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
26316298 ATCAGAAT
1 ATCAGAAT
26316306 CAGAATCAGT
Statistics
Matches: 113, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
29 1 0.01
30 54 0.48
31 29 0.26
36 29 0.26
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:26316311 original size:55 final size:58
Alignment explanation
Indices: 26316162--26316433 Score: 155
Period size: 61 Copynumber: 4.8 Consensus size: 58
26316152 AACCAAAATG
* * *
26316162 AGAATCAGAATCAGAATCAG--TA-ACAGAATTAGAATCAGAATCA-ATATTA-GTAAC
1 AGAATCAGAATCAGAATCAGTATACACAGAATCAGAATCAGAATCAGA-ATTACATGAC
* * * *
26316216 AGAATCAGAATCAGAATCAGAAT-CA-A-TATTAGTAAT-AGAATCAGAATTAGA--ATC
1 AGAATCAGAATCAGAATCAGTATACACAGAATCAG-AATCAGAATCAGAATTACATGA-C
* * * * * *
26316270 AGAATTAG-GTGACAGAATCAG-A-A-TCAGAATCAGAATCAGAATCAGTATTA-GTAAC
1 AGAATCAGAAT--CAGAATCAGTATACACAGAATCAGAATCAGAATCAGAATTACATGAC
* * *
26316325 AGAATCAGAATCAGAATCAGAATTACATGACAGAATCAGAATCAGAATCAGTATTAC-TAAC
1 AGAATCAGAATCAGAATCAGTA-TAC---ACAGAATCAGAATCAGAATCAGAATTACATGAC
*
26316386 AGAATCAGAATCAGAATCAGAATTACATGACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTA-TAC---ACAGAATCAGAATCAGAAT
26316434 GTGAATGCAA
Statistics
Matches: 182, Mismatches: 12, Indels: 41
0.77 0.05 0.17
Matches are distributed among these distances:
53 2 0.01
54 58 0.32
55 39 0.21
56 4 0.02
57 1 0.01
61 78 0.43
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (58 bp):
AGAATCAGAATCAGAATCAGTATACACAGAATCAGAATCAGAATCAGAATTACATGAC
Found at i:26316397 original size:61 final size:61
Alignment explanation
Indices: 26316294--26316433 Score: 271
Period size: 61 Copynumber: 2.3 Consensus size: 61
26316284 GAATCAGAAT
*
26316294 CAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACATGA
1 CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
26316355 CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
1 CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
26316416 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
26316434 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 78 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.21
Consensus pattern (61 bp):
CAGAATCAGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGA
Found at i:26316432 original size:73 final size:71
Alignment explanation
Indices: 26316162--26316433 Score: 315
Period size: 73 Copynumber: 4.0 Consensus size: 71
26316152 AACCAAAATG
* * * *
26316162 AGAATCAGAATCAGAATCAGTAACAGAATTAGAATCAGAATCA-ATATTA-G---TAA-CAGAAT
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGA-ATTATGACAGAATCAGAAT
26316221 CAGAATC
65 CAGAATC
* * *
26316228 AGAATCAGAATCAATATTAGTAATAGAATCAGAATTAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTA--TGACAGAATCAGAA
26316293 TCAGAATC
64 TCAGAATC
26316301 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAA-T-T-AC---AT--G-A-C
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTATGACAGAATCAGAATC
26316356 AGAATC
66 AGAATC
*
26316362 AGAATCAGAATCAGTATTACTAACAGAATCAGAATCAGAATCAGAATTACATGACAGAATCAGAA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATT--ATGACAGAATCAGAA
26316427 TCAGAAT
64 TCAGAAT
26316434 GTGAATGCAA
Statistics
Matches: 175, Mismatches: 11, Indels: 33
0.80 0.05 0.15
Matches are distributed among these distances:
61 52 0.30
62 2 0.01
63 1 0.01
65 3 0.02
66 43 0.25
67 1 0.01
68 2 0.01
69 4 0.02
71 1 0.01
72 4 0.02
73 62 0.35
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (71 bp):
AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTATGACAGAATCAGAATC
AGAATC
Found at i:26318897 original size:22 final size:22
Alignment explanation
Indices: 26318869--26318918 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
26318859 TATACCATAT
26318869 TTCAAACATACCTTAATAGCCA
1 TTCAAACATACCTTAATAGCCA
26318891 TTCAAACATACCTTAATAGCCA
1 TTCAAACATACCTTAATAGCCA
26318913 TTCAAA
1 TTCAAA
26318919 TATGCATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.28
Consensus pattern (22 bp):
TTCAAACATACCTTAATAGCCA
Found at i:26320055 original size:195 final size:195
Alignment explanation
Indices: 26319723--26320114 Score: 712
Period size: 195 Copynumber: 2.0 Consensus size: 195
26319713 TTATTTTTAA
26319723 AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
1 AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
*
26319788 CTCAAAGTCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
66 CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
*
26319853 CTAGAATTTTTTGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
131 CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
* * * *
26319918 AACTTCCAGACAAGCTGGCAATCTGTGTCATAGTCGCTTAAAAATTCATATCTCGAGTTCCGAAA
1 AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
*
26319983 CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATTTGATAATGTTTTT
66 CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
*
26320048 CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTGTTTCAAGGTTC
131 CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
26320113 AA
1 AA
26320115 TTGTTCTGAC
Statistics
Matches: 189, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
195 189 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (195 bp):
AACTTCCAGACAAGCTGGAAATCTGCGTCACAGTCGCTTAAAAATTCATATCTCGAGTTCCAAAA
CTCAAAATCAAAATTTGTAAATTTTTCATGAAACTAGACTCATATATATATCTGATAATGTTTTT
CTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTTAAAATCTCCCCTATTTCAAGGTTC
Found at i:26322650 original size:40 final size:40
Alignment explanation
Indices: 26322497--26322690 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
26322487 TTCGAATGAT
* * * *
26322497 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
26322538 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
26322578 TTCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
26322617 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
26322658 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26322691 AGCTATATCC
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 33 0.25
40 70 0.53
41 27 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:26322705 original size:79 final size:78
Alignment explanation
Indices: 26322499--26322716 Score: 221
Period size: 79 Copynumber: 2.7 Consensus size: 78
26322489 CGAATGATAT
* * * * *
26322499 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
26322563 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
26322580 CCGGGCTAAG-CCCGAAGGCATTGGTA-CGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATT
26322642 TGTGCGAGTTACT-ATAA
62 TGTGCGAGTTACTAAT-A
* *
26322659 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
26322717 TATGTGATTC
Statistics
Matches: 115, Mismatches: 12, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
78 3 0.03
79 59 0.51
80 43 0.37
81 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:26325145 original size:30 final size:30
Alignment explanation
Indices: 26325111--26325170 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
26325101 CTTTAATACG
* *
26325111 AACTTTGGAAAAATTATATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
26325141 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
26325171 GGCTCGAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:26327718 original size:40 final size:40
Alignment explanation
Indices: 26327653--26327744 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
26327643 ATTATGTTTG
* *
26327653 GCACTTAGTGTGCGTTTCGAGATAGCTTCGGGTATATATA
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATA
* * * *
26327693 GCACTTAGTGTGCGAATTGGA-ATAGCTTTGGCTATATGTG
1 GCACTTAGTGTGCG-ATTCGAGATAGCTTCGGCTATATATA
*
26327733 GCACTAAGTGTG
1 GCACTTAGTGTG
26327745 TGATGCTAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 40 0.91
41 4 0.09
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATA
Found at i:26328512 original size:23 final size:24
Alignment explanation
Indices: 26328467--26328519 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
26328457 ATGGTAAATT
*
26328467 TTGGTATGATTTGTGAATGATGAA
1 TTGGTATGATTTGAGAATGATGAA
*
26328491 TTGGTATG-TTTGAGAA-GCATGAT
1 TTGGTATGATTTGAGAATG-ATGAA
26328514 TTGGTA
1 TTGGTA
26328520 GATAGAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 1 0.04
23 17 0.65
24 8 0.31
ACGTcount: A:0.26, C:0.02, G:0.30, T:0.42
Consensus pattern (24 bp):
TTGGTATGATTTGAGAATGATGAA
Found at i:26332852 original size:42 final size:42
Alignment explanation
Indices: 26332771--26332913 Score: 139
Period size: 43 Copynumber: 3.3 Consensus size: 42
26332761 TCCCAAACGT
* *
26332771 GGTCTTACATGTAATCAAATATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAAC-ATCCCAGACAG
* *
26332814 GGTCTTACACGAAATCAAATACGATGCCAACGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGACAG
* * * *
26332856 AGTCTTACATGTAAATCATAAGT-CAATGCCAACATCCTAGAC-G
1 GGTCTTACACG-AAATCA-AA-TACGATGCCAACATCCCAGACAG
26332899 TGGTCTTACACGAAA
1 -GGTCTTACACGAAA
26332914 ACACATATCG
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
42 25 0.30
43 30 0.36
44 27 0.33
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGACAG
Found at i:26336156 original size:19 final size:21
Alignment explanation
Indices: 26336115--26336157 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26336105 TTCAGTATTC
*
26336115 AAAAAATCATTATAAATAGTA
1 AAAAAATCATTATAAAGAGTA
*
26336136 AAAAAATGATTAT-AAGA-TA
1 AAAAAATCATTATAAAGAGTA
26336155 AAA
1 AAA
26336158 TTTTACGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 12 0.60
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAAAATCATTATAAAGAGTA
Found at i:26337154 original size:141 final size:141
Alignment explanation
Indices: 26336824--26337158 Score: 438
Period size: 141 Copynumber: 2.4 Consensus size: 141
26336814 AGCTAAGGCC
* ** ** * * * *
26336824 GAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
* * * *
26336889 ATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
* *
26336954 GTGATAAGGCC
131 GTGATAAGACA
* * *
26336965 GAATGGCCAATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
*
26337030 ATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
26337095 GTGATAAGACA
131 GTGATAAGACA
* * * * *
26337106 GAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGGAAAGCCGAATGG
1 GAATGGCCAATGTGATGAACAT-GAACATGCACATATGTGAGAAAGCCGAATGG
26337159 TTAATGCGAA
Statistics
Matches: 172, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
141 169 0.98
142 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (141 bp):
GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
GTGATAAGACA
Found at i:26337158 original size:47 final size:47
Alignment explanation
Indices: 26336786--26337124 Score: 507
Period size: 47 Copynumber: 7.2 Consensus size: 47
26336776 TTAGAATTTT
* ** * * * *
26336786 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26336833 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26336880 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
26336927 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26336974 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26337021 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26337068 ATGTGATAAATGTGAACATGCATATATGTGATAAGACAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
26337115 ATGTGATGAA
1 ATGTGATGAA
26337125 CGTGGAAGTG
Statistics
Matches: 267, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 267 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26337191 original size:46 final size:46
Alignment explanation
Indices: 26337138--26337228 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
26337128 GGAAGTGTAT
* * *
26337138 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
26337184 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
26337229 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:26343148 original size:40 final size:40
Alignment explanation
Indices: 26342960--26343148 Score: 149
Period size: 40 Copynumber: 4.8 Consensus size: 40
26342950 TTGAATGATG
* * * * *
26342960 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAA
* * * *
26343000 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTAAA
* * *
26343040 TCTGGGC---G-CCTGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
* * *
26343076 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-AA
* *
26343117 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
26343149 AGCTATATCC
Statistics
Matches: 118, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
36 28 0.24
37 1 0.01
39 1 0.01
40 78 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
Found at i:26344876 original size:51 final size:51
Alignment explanation
Indices: 26344795--26344895 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
26344785 ACGGACTCTC
26344795 AACCTAATGCTAGTAACCCGAATGAGGAAGCTAGACAAGCTTTCTATAGCA
1 AACCTAATGCTAGTAACCCGAATGAGGAAGCTAGACAAGCTTTCTATAGCA
*
26344846 AACCTAATGCTAGTAACCCGAATGATGAAGCTAGACAAGCTTTCTATAGC
1 AACCTAATGCTAGTAACCCGAATGAGGAAGCTAGACAAGCTTTCTATAGC
26344896 GTGATGAATG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.23
Consensus pattern (51 bp):
AACCTAATGCTAGTAACCCGAATGAGGAAGCTAGACAAGCTTTCTATAGCA
Found at i:26345637 original size:268 final size:268
Alignment explanation
Indices: 26345160--26345694 Score: 1043
Period size: 268 Copynumber: 2.0 Consensus size: 268
26345150 CGATGAATGC
26345160 CTAAAGTGTACTATCTCCTTGCTACGTGATTCTGCCTACTATTGGTGGAGTACTCTGACTTCTGT
1 CTAAAGTGTACTATCTCCTTGCTACGTGATTCTGCCTACTATTGGTGGAGTACTCTGACTTCTGT
*
26345225 TGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAACTGAGTTTCGGAAAAAGTATATCAGTC
66 CGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAACTGAGTTTCGGAAAAAGTATATCAGTC
26345290 AGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAGCAAGGTTCTATGTCAGTTACT
131 AGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAGCAAGGTTCTATGTCAGTTACT
26345355 GATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAATGTGTTTCGTCCGAGGCTGT
196 GATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAATGTGTTTCGTCCGAGGCTGT
26345420 TATGTGTT
261 TATGTGTT
*
26345428 CTAAAGTGTGCTATCTCCTTGCTACGTGATTCTGCCTACTATTGGTGGAGTACTCTGACTTCTGT
1 CTAAAGTGTACTATCTCCTTGCTACGTGATTCTGCCTACTATTGGTGGAGTACTCTGACTTCTGT
*
26345493 CGTGCCCCGGGAGCAAGTAACTTGGGAGTTTTTCCAAACTGAGTTTCGGAAAAAGTATATCAGTC
66 CGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAACTGAGTTTCGGAAAAAGTATATCAGTC
26345558 AGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAGCAAGGTTCTATGTCAGTTACT
131 AGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAGCAAGGTTCTATGTCAGTTACT
26345623 GATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAATGTGTTTCGTCCGAGGCTGT
196 GATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAATGTGTTTCGTCCGAGGCTGT
26345688 TATGTGT
261 TATGTGT
26345695 AAACGCTTCG
Statistics
Matches: 264, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
268 264 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (268 bp):
CTAAAGTGTACTATCTCCTTGCTACGTGATTCTGCCTACTATTGGTGGAGTACTCTGACTTCTGT
CGTGCCCCGAGAGCAAGTAACTTGGGAGTTTTTCCAAACTGAGTTTCGGAAAAAGTATATCAGTC
AGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAGCAAGGTTCTATGTCAGTTACT
GATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAATGTGTTTCGTCCGAGGCTGT
TATGTGTT
Found at i:26352187 original size:40 final size:40
Alignment explanation
Indices: 26352130--26353080 Score: 1785
Period size: 40 Copynumber: 23.8 Consensus size: 40
26352120 ACATTGGAAT
* *
26352130 ATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352170 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352210 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352250 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352290 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352330 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352370 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352410 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352450 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352490 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352530 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352570 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352610 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352650 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352690 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352730 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352770 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352810 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
26352850 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
*
26352890 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
*
26352930 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
* * * *
26352970 ATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
* *
26353010 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
* * *
26353050 ATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATCCGGGCTAAGACCCGAAGGCAATTATG
26353081 TTTGCGGCTG
Statistics
Matches: 898, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 898 1.00
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
Done.