Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 83 of 310
Found at i:26794158 original size:40 final size:40
Alignment explanation
Indices: 26794099--26794194 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
26794089 TTTTTGAATC
* *
26794099 AATG-AAAGGTTGAAAAGGATGTTATCCAAAAGGATAACA
1 AATGAAAAGGTTGAAAAGGATGTCATACAAAAGGATAACA
* * *
26794138 AATGAAAAGGTTGAACAGGATGTCATATAAAAGGATAATA
1 AATGAAAAGGTTGAAAAGGATGTCATACAAAAGGATAACA
* *
26794178 GATGAAAAGGTCGAAAA
1 AATGAAAAGGTTGAAAA
26794195 TGATATCAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 4 0.08
40 44 0.92
ACGTcount: A:0.50, C:0.06, G:0.24, T:0.20
Consensus pattern (40 bp):
AATGAAAAGGTTGAAAAGGATGTCATACAAAAGGATAACA
Found at i:26795602 original size:42 final size:42
Alignment explanation
Indices: 26795539--26795625 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
26795529 CTTACCTCGC
* *
26795539 GAAAGTGCTAGGGGTTTCATCGACTTCGTTGAAATCGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
26795581 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
26795623 GAA
1 GAA
26795626 GGGATCCTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (42 bp):
GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
Found at i:26797057 original size:73 final size:74
Alignment explanation
Indices: 26796974--26797119 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 74
26796964 TATATATGTC
26796974 TATATCTTATTATTAATCTCATG-TTTTTTTTACAATAAACTTATATGTACATTTTTTATAAATC
1 TATATCTTATTATTAATCTCATGTTTTTTTTTACAATAAACTTATATGTACATTTTTTATAAATC
26797038 TATTTTGTG
66 TATTTTGTG
* *
26797047 TATATCTTATTTTTACTCTCATGTTTTTTTTTTACAATAAACTTATATGTACATTTTTTATAAAT
1 TATATCTTATTATTAATCTCATG-TTTTTTTTTACAATAAACTTATATGTACATTTTTTATAAAT
26797112 CTATTTTG
65 CTATTTTG
26797120 GGCCTCATGT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
73 21 0.30
75 48 0.70
ACGTcount: A:0.29, C:0.10, G:0.05, T:0.56
Consensus pattern (74 bp):
TATATCTTATTATTAATCTCATGTTTTTTTTTACAATAAACTTATATGTACATTTTTTATAAATC
TATTTTGTG
Found at i:26797159 original size:16 final size:17
Alignment explanation
Indices: 26797135--26797180 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
26797125 CATGTTTTTG
*
26797135 TCATGTATTTTTTG-TA
1 TCATATATTTTTTGATA
26797151 TCATATATTTTTTGTACTA
1 TCATATATTTTTTG-A-TA
26797170 TCATATATTTT
1 TCATATATTTT
26797181 GTTAACTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 13 0.50
19 13 0.50
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.61
Consensus pattern (17 bp):
TCATATATTTTTTGATA
Found at i:26798078 original size:131 final size:130
Alignment explanation
Indices: 26797884--26798224 Score: 325
Period size: 130 Copynumber: 2.6 Consensus size: 130
26797874 GCGTTTGACA
* * * * * * * *
26797884 ATTTGAGAATCATGCCCTATCCTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATT
1 ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATC
* * ** *
26797949 CCTTTA-TATTCTCACTCA-TGTTTATAAAAAATAC-TTAAAAATGAAGACGATGTTCAATATTT
66 CCTTCAGAATT-TCACTCACAATTCAT--AAAAT-CTTTAAAAATGAAGACGATGTTCAATATTT
26798011 GGCG
127 GGCG
* *
26798015 ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGTTCAAAACAATTGAACATC
1 ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATC
* * * * * *
26798080 CCTTCAGAATTTCACTCACAATTCCTAAAATCTTTCAAAATGAAGGCGATGTTCGATGTTTGGTG
66 CCTTCAGAATTTCACTCACAATTCATAAAATCTTTAAAAATGAAGACGATGTTCAATATTTGGCG
* * * * * *
26798145 ATTTGAGAATCGA-GCCCTATCGTGTTGGGTTGCGCTTTTTTATTTG-TCCAAAATAATCGAATA
1 ATTTGAGAATC-ATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGCT-CAAAACAATCGAACA
*
26798208 TCTCC-TCAAAATTTCAC
64 TC-CCTTCAGAATTTCAC
26798225 ACGTATTTTA
Statistics
Matches: 175, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
129 2 0.01
130 97 0.55
131 70 0.40
132 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (130 bp):
ATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATC
CCTTCAGAATTTCACTCACAATTCATAAAATCTTTAAAAATGAAGACGATGTTCAATATTTGGCG
Found at i:26798174 original size:130 final size:130
Alignment explanation
Indices: 26797986--26798224 Score: 329
Period size: 130 Copynumber: 1.8 Consensus size: 130
26797976 AAAATACTTA
26797986 AAAATGAAGACGATGTTCAATATTTGGCGATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCT
1 AAAATGAAGACGATGTTCAATATTTGGCGATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCT
* * *
26798051 TTTTCATTGGTTCAAAACAATTGAACATC-CCTTCAGAATTTCACTCACAATTCCTAAAATCTTT
66 TTTTCATTGGTCCAAAACAATCGAACATCTCC-TCAAAATTTCACTCACAATTCCTAAAATCTTT
26798115 C
130 C
* * * * * *
26798116 AAAATGAAGGCGATGTTCGATGTTTGGTGATTTGAGAATCGA-GCCCTATCGTGTTGGGTTGCGC
1 AAAATGAAGACGATGTTCAATATTTGGCGATTTGAGAATC-ATGCCCTATCATGCTGGGTTGCGC
* * * *
26798180 TTTTTTATTTGTCCAAAATAATCGAATATCTCCTCAAAATTTCAC
65 TTTTTCATTGGTCCAAAACAATCGAACATCTCCTCAAAATTTCAC
26798225 ACGTATTTTA
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
130 91 0.97
131 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (130 bp):
AAAATGAAGACGATGTTCAATATTTGGCGATTTGAGAATCATGCCCTATCATGCTGGGTTGCGCT
TTTTCATTGGTCCAAAACAATCGAACATCTCCTCAAAATTTCACTCACAATTCCTAAAATCTTTC
Found at i:26809820 original size:44 final size:44
Alignment explanation
Indices: 26809769--26810336 Score: 714
Period size: 44 Copynumber: 12.9 Consensus size: 44
26809759 GAATCCTACG
* * *
26809769 GATTTGGCGTCTCTGTATTGTCAGAGGGCAAATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
26809813 AATTTGGCGACTCTGTATTGGCAGACAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * * *
26809857 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
*
26809901 GATTTGGCGTCTCTGTATTGG-TGAAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATAGCA
* * * *
26809945 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
*
26809989 GATTTGGCGTCTCTGTATTGG-TGAAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATAGCA
* * * *
26810033 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
*
26810077 GATTTGGCGTCTCTGTATTGG-TGAAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATAGCA
* * * *
26810121 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
*
26810165 GATTTGGCGTCTCTGTATTGG-TGAAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATAGCA
* * *
26810209 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * * * *
26810253 GACTTGGCGTCTCTGTAGTGTCAGAGGGCGGATCGAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG-CA
* * *
26810297 GATTTGGCGTATCTGTGATTGACAGAGAGCAAATCGAAGA
1 GATTTGGCGTCTCTGT-ATTGGCAGAGAGCAGATCGAAGA
26810337 CAACGAATCT
Statistics
Matches: 455, Mismatches: 59, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
43 5 0.01
44 428 0.94
45 22 0.05
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
Found at i:26810312 original size:88 final size:88
Alignment explanation
Indices: 26809769--26810304 Score: 873
Period size: 88 Copynumber: 6.1 Consensus size: 88
26809759 GAATCCTACG
* * * * * * *
26809769 GATTTGGCGTCTCTGTATTGTCAGAGG-GCAAATCGAAGATAGCAAATTTGGCGACTCTGTATTG
1 GATTTGGCATCTCTGTATTGGC-GGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
26809833 G-CAGACAGCAGATCGAAGATAGCA
65 GTGA-AGAGCAGATCGAAGATAGCA
26809857 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
26809922 TGAAGAGCAGATCGAAGATAGCA
66 TGAAGAGCAGATCGAAGATAGCA
26809945 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
26810010 TGAAGAGCAGATCGAAGATAGCA
66 TGAAGAGCAGATCGAAGATAGCA
26810033 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
26810098 TGAAGAGCAGATCGAAGATAGCA
66 TGAAGAGCAGATCGAAGATAGCA
26810121 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
26810186 TGAAGAGCAGATCGAAGATAGCA
66 TGAAGAGCAGATCGAAGATAGCA
* * *
26810209 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCAGACTTGGCGTCTCTGTAGT-G
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
* * *
26810273 TCAGAGGGCGGATCGAAGAT-GACA
66 TGA-AGAGCAGATCGAAGATAG-CA
26810297 GATTTGGC
1 GATTTGGC
26810305 GTATCTGTGA
Statistics
Matches: 429, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
87 7 0.02
88 421 0.98
89 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (88 bp):
GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
TGAAGAGCAGATCGAAGATAGCA
Found at i:26813721 original size:130 final size:130
Alignment explanation
Indices: 26813551--26813789 Score: 309
Period size: 130 Copynumber: 1.8 Consensus size: 130
26813541 AAAATACTTA
** * * *
26813551 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGTTCCCTATCGTGCTGGGTTGCACT
1 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGCTACACT
* *
26813616 TTTTCATTGGTTCGAAACAATTGAACATC-CCTTCGGAATTTCACTCACATTTCTTAAAATCTTT
66 TTTTCATTGGTCCAAAACAATTGAACATCTCC-TCGGAATTTCACTCACATTTCTTAAAATCTTT
26813680 C
130 C
* * * * * *
26813681 AAAATGAAGGCGATGTTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCATGTTGGGCTACGCT
1 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGCTACACT
* * * *
26813746 TTTTTATTTGTCCAAAATAATTGAATATCTCCTCGGAATTTCAC
66 TTTTCATTGGTCCAAAACAATTGAACATCTCCTCGGAATTTCAC
26813790 ACGTATTTTA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
130 89 0.98
131 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGCTACACT
TTTTCATTGGTCCAAAACAATTGAACATCTCCTCGGAATTTCACTCACATTTCTTAAAATCTTTC
Found at i:26819659 original size:40 final size:40
Alignment explanation
Indices: 26819575--26819799 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
26819565 AAACCAAGTA
* * * * *
26819575 CCTTCGGGATTTAG-CCGGATATCGCAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
* * *
26819614 GCTTCGGGACTTAACCCGAATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
* * *
26819654 CCTTCGGGTCTTAGCCCAGAA-ATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATG
** *
26819694 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAATATAG-TA--ACTCGCACAAATG
* **
26819737 CCTTCGGGACTTAGCCTGAATATAGTAACTTACACAAATG
1 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
* *
26819777 CCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGAATAT
26819800 CATCCGAATA
Statistics
Matches: 151, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
39 12 0.08
40 101 0.67
41 3 0.02
42 1 0.01
43 34 0.23
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
Found at i:26819751 original size:83 final size:81
Alignment explanation
Indices: 26819575--26819799 Score: 253
Period size: 83 Copynumber: 2.8 Consensus size: 81
26819565 AAACCAAGTA
* * * * * * *
26819575 CCTTCGGGATTTAGCC-GGATATCGCAACTT-GCACAAATGGCTTCGGGACTTAACCCGAATATA
1 CCTTCGGGACTTAGCCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
26819638 GTAACTCGCACACATG
66 GAAACTCGCACAAATG
* * *
26819654 CCTTCGGGTCTTAGCCCAGAA-ATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGGTAT
1 CCTTCGGGACTTAG-CCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26819717 AGCAACTACTCGCACAAATG
65 AG-AA--ACTCGCACAAATG
* *
26819737 CCTTCGGGACTTAGCCTGAATATAGTAACTTA-CACAAATGCCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26819800 CATCCGAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
79 13 0.11
80 37 0.31
81 3 0.02
82 5 0.04
83 61 0.50
84 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCAGAATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GAAACTCGCACAAATG
Found at i:26819790 original size:123 final size:119
Alignment explanation
Indices: 26819575--26819793 Score: 303
Period size: 123 Copynumber: 1.8 Consensus size: 119
26819565 AAACCAAGTA
* * *
26819575 CCTTCGGGATTTAGCCGGATATCGCAACTTGCACAAATGGCTTCGGGACTTAACCCGAATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAACCCGAATATAGT
* * * *
26819640 AACTCGCACACATGCCTTCGGGTCTTAGCCCAGAAATAGTCACTAGCACAAATG
66 AACTCACACAAATGCCTCCGGGACTTAGCCCAGAAATAGTCACTAGCACAAATG
* * *
26819694 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCTGAATA
1 CCTTCGGGACTTAG-CCGGATATAGCAACT--T-GCACAAATGCCTTCGGGACTTAACCCGAATA
*
26819759 TAGTAACTTACACAAATGCCTCCGGGACTTAGCCC
62 TAGTAACTCACACAAATGCCTCCGGGACTTAGCCC
26819794 GGATATCATC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
119 13 0.15
120 13 0.15
122 1 0.01
123 58 0.68
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAACCCGAATATAGT
AACTCACACAAATGCCTCCGGGACTTAGCCCAGAAATAGTCACTAGCACAAATG
Found at i:26828043 original size:40 final size:40
Alignment explanation
Indices: 26827974--26828198 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
26827964 AAACCAAGTA
* * *
26827974 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26828013 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
26828053 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * ** *
26828093 CATTCGAGACTTAGCCCGGGTATAACAACTACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTA--ACTCGCACAAATG
* *
26828136 CCTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26828176 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
26828199 CATCCGAATA
Statistics
Matches: 152, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
39 12 0.08
40 107 0.70
41 1 0.01
42 2 0.01
43 30 0.20
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26828152 original size:83 final size:83
Alignment explanation
Indices: 26828040--26828194 Score: 229
Period size: 83 Copynumber: 1.9 Consensus size: 83
26828030 GGATATAGTA
* * * * *
26828040 ACTCGCACACATGCCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCATTCGAGACTT
1 ACTCGAACAAATGCCTTCAGGACTTAGCCCGGAAATAGTAACTAGCACAAATGCATTCGAGACTT
26828105 AGCCCGGGTATAACAACT
66 AGCCCGGGTATAACAACT
* * * *
26828123 ACTCGAACAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTT
1 ACTCGAACAAATGCCTTCAGGACTTAGCCCGGAAATAGTAACTAGCACAAATGCATTCGAGACTT
26828188 AGCCCGG
66 AGCCCGG
26828195 ATATCATCCG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 63 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (83 bp):
ACTCGAACAAATGCCTTCAGGACTTAGCCCGGAAATAGTAACTAGCACAAATGCATTCGAGACTT
AGCCCGGGTATAACAACT
Found at i:26829696 original size:65 final size:65
Alignment explanation
Indices: 26829608--26829736 Score: 240
Period size: 65 Copynumber: 2.0 Consensus size: 65
26829598 TAGTTAATTA
26829608 TTTTTATGACTCGATTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCAATTTAAGGCTGTCAT
1 TTTTTATGACTCGATTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCAATTTAAGGCTGTCAT
* *
26829673 TTTTTATGACTCGGTTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCA
1 TTTTTATGACTCGATTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCAATTTAAGGCTGTCA
26829737 GACGTTATCT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (65 bp):
TTTTTATGACTCGATTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCAATTTAAGGCTGTCAT
Found at i:26853897 original size:48 final size:48
Alignment explanation
Indices: 26853841--26853932 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
26853831 GAAGGGATGG
* * *
26853841 ATAGTGATAGGCA-TGTAGACAGTGGAAGATCAAGTTTAGCAATGATAA
1 ATAGTGATAAG-AGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
26853889 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
26853933 CATAGCATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.03
48 39 0.98
ACGTcount: A:0.40, C:0.08, G:0.28, T:0.24
Consensus pattern (48 bp):
ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
Found at i:26858599 original size:3 final size:3
Alignment explanation
Indices: 26858593--26858618 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26858583 TCTTAAATAT
26858593 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
26858619 CCTCTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26858776 original size:15 final size:15
Alignment explanation
Indices: 26858756--26858801 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
26858746 ACTACCACAT
* *
26858756 TTATTATTCTCGTTA
1 TTATTATTATCATTA
26858771 TTATTATTATCATTA
1 TTATTATTATCATTA
*
26858786 TTATTACTATCATTA
1 TTATTATTATCATTA
26858801 T
1 T
26858802 AATTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (15 bp):
TTATTATTATCATTA
Found at i:26861529 original size:27 final size:27
Alignment explanation
Indices: 26861489--26861581 Score: 73
Period size: 27 Copynumber: 3.4 Consensus size: 27
26861479 TTTATTAAAC
* *
26861489 TTTTTGAAACATTTTATATTTTTGAAT
1 TTTTTAAAATATTTTATATTTTTGAAT
26861516 TTTTTAAAATATTTTATAATTATTATGAAT
1 TTTTTAAAATATTTTAT-ATT-TT-TGAAT
* * * * *
26861546 ATTAT-ATATATTTCA-ATTTTTGTTAT
1 TTTTTAAAATATTTTATATTTTTG-AAT
26861572 TTTTTAAAAT
1 TTTTTAAAAT
26861582 TCAACCAATT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
25 2 0.04
26 7 0.14
27 21 0.41
28 3 0.06
29 10 0.20
30 8 0.16
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTTTAAAATATTTTATATTTTTGAAT
Found at i:26864613 original size:3 final size:3
Alignment explanation
Indices: 26864601--26864771 Score: 118
Period size: 3 Copynumber: 57.7 Consensus size: 3
26864591 TTAAATTATT
* * *
26864601 TAA T-A TAA TAA TAA TAA CTTA TATG TAAA TAA -AA AAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TA-A T-AA TAA TAA TAA TAA TAA TAA
* * * *
26864646 TAA TAA TAA TAA TAG TAA T-A CAA TAG TAA TAA TAA TAA TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** ** * * * *
26864693 AAA TAG TAA TAA TAA TGG CCA TAA AAA TAA TAG TAA TAG TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
26864741 TAA TAA TAA TAA TAA -AA TAG TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26864772 TTATTATTAA
Statistics
Matches: 129, Mismatches: 31, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
2 9 0.07
3 115 0.89
4 4 0.03
5 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:26864782 original size:29 final size:30
Alignment explanation
Indices: 26864643--26864788 Score: 124
Period size: 29 Copynumber: 4.9 Consensus size: 30
26864633 AAAAATATAA
* *
26864643 TAATAATAATAATAATAGTAAT-ACAATAG
1 TAATAATAATAATAATAATAATGAAAATAG
*
26864672 TAATAATAATAATAATAA-CA--AAAATAG
1 TAATAATAATAATAATAATAATGAAAATAG
* * *
26864699 TAATAATAATGGCCATAAAAATAAT-AGTAATAG
1 TAATAATAAT---AATAATAATAATGA-AAATAG
*
26864732 TAGTAATAATAATAATAATAAT-AAAATAG
1 TAATAATAATAATAATAATAATGAAAATAG
* * *
26864761 TAATAATAATATTATTATTAATGAAAAT
1 TAATAATAATAATAATAATAATGAAAAT
26864789 TAAATTAATT
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
27 16 0.17
28 1 0.01
29 40 0.42
30 22 0.23
31 1 0.01
32 1 0.01
33 14 0.15
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.32
Consensus pattern (30 bp):
TAATAATAATAATAATAATAATGAAAATAG
Found at i:26866179 original size:44 final size:44
Alignment explanation
Indices: 26866116--26866244 Score: 213
Period size: 44 Copynumber: 2.9 Consensus size: 44
26866106 TCTAATCCAC
* *
26866116 TGTAACTTCAGGGAGATGAGACTTGTAGGTTCGATTTACTCTAA
1 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
26866160 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
1 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
* * *
26866204 TGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTC
1 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTC
26866245 CGCTGGAACT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 80 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (44 bp):
TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
Found at i:26866610 original size:275 final size:273
Alignment explanation
Indices: 26866187--26867201 Score: 1208
Period size: 275 Copynumber: 3.7 Consensus size: 273
26866177 GAGACTTGTA
** *
26866187 GCTTCGATTTACTCTAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
1 GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
* * * * * **
26866252 ACTTAAAGGAGATAAGAATCACTGTTTTCAATCTGCTTCGCTGCAACTTTAGGGAGATAAGGCTG
66 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
* ** * * *
26866317 GTGGCTTCAATCTGCTCCACTGCGTCTTCAAGAAGATAACATCCGCCATGATTTGTGACTTTAAT
131 GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT-ATTTGT-ACTTCAAT
*
26866382 CTGTCCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTTC-GCTACAACTTCA
194 CTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGC-TCAGCTACAACTTCA
*
26866446 GAGAGATAGGGATGGT
258 GAGAGATAGGGCTGGT
*
26866462 GCTTCGATCCACTCCAATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
1 GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
* *
26866527 ACTTCAAGGAGGTAAGAATCACTGTCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAGGGCCA
66 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
* *
26866592 ATGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAGTTCGTAGCTTCAAT
131 GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATA-TTTGTA-CTTCAAT
* * *
26866657 CTGTTCCACTACAACTCCAGGGAAATAAGATTCGTTGTCTTTAGTCTGCTCAGCTACAACTTCAG
194 CTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCAGCTACAACTTCAG
*
26866722 GGAGATAGGGCTGGT
259 AGAGATAGGGCTGGT
* * * * *
26866737 GCTGCGATCCATTCCAATGTAATTTCAGGGAGAAGAGATTTGCAGCTTCGATCTACTCCACTGAA
1 GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
*
26866802 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAGGGCCA
66 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
* * * *
26866867 GTGGCTTTAATCTACTCCATTGCAACTTCAGGAAGATATGATCCGCTATAATTTGTAACTTCAAT
131 GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT-ATTTGT-ACTTCAAT
* * * * * *
26866932 TTGTTCCACTGCAAC-TCTAGAGAAATAAGATTCACTT-TCTTCAGTCTGCTCTGCTGCAACTTT
194 CTGTTCCACTGCAACTTC-AGGGAAATAAGATTC-GTTGTCTTCAGTCTGCTCAGCTACAACTTC
*
26866995 AGAGAGATAAGGCTGGT
257 AGAGAGATAGGGCTGGT
* * * * * * * **
26867012 GGCTTCAATCTATTCTACTGTAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCT
1 -GCTTCGATCCACTCCAATGTAATTTCAGG--GAGAAGA---G-----ATTTGTAGCTTCGATCT
** * * * * * * * *
26867077 GTTCCACTGTAACTCCAAGGAAATAAGATTCACTTTATTTAGTCTGCTCCGCTGCAACTTTAGGG
55 ACTCCGCTGGAACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGG
* * * * * *
26867142 AGATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCCACCAT
120 AGATAGGGCCAGTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT
26867202 CTTCAATCTA
Statistics
Matches: 639, Mismatches: 83, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
274 5 0.01
275 481 0.75
276 27 0.04
278 6 0.01
281 1 0.00
286 119 0.19
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (273 bp):
GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATATTTGTACTTCAATCT
GTTCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCAGCTACAACTTCAGAG
AGATAGGGCTGGT
Found at i:26867037 original size:143 final size:143
Alignment explanation
Indices: 26866793--26867201 Score: 541
Period size: 143 Copynumber: 2.9 Consensus size: 143
26866783 TTCGATCTAC
* * * * * *
26866793 TCCACTGAAACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
1 TCCACTGCAACTCCAAGGAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAG
* * * * * *
26866858 ATAGGGCCAGTGGCTTTAATCTACTCCATTGCAACTTCAGGAAGATATGATCCGCTATAATTTGT
66 ATAAGGCTAGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGT
*
26866923 AACTTCAATTTGT
131 AACTTCAATCTGT
* * *
26866936 TCCACTGCAACT-CTAGAGAAATAAGATTCACTTTCTTCAGTCTGCTCTGCTGCAACTTTAGAGA
1 TCCACTGCAACTCCAAG-GAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGA
* * * *
26867000 GATAAGGCTGGTGGCTTCAATCTATTCTACTGTAACTTCAGGAAGATAAGATCCGCCATAATTTG
65 GATAAGGCTAGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTG
* *
26867065 TAGCTTTAATCTGT
130 TAACTTCAATCTGT
* * *
26867079 TCCACTGTAACTCCAAGGAAATAAGATTCACTTTATTTAGTCTGCTCCGCTGCAACTTTAGGGAG
1 TCCACTGCAACTCCAAGGAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAG
* * * *
26867144 ATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCCACCAT
66 ATAAGGCTAGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT
26867202 CTTCAATCTA
Statistics
Matches: 229, Mismatches: 35, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
142 3 0.01
143 223 0.97
144 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (143 bp):
TCCACTGCAACTCCAAGGAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAG
ATAAGGCTAGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGT
AACTTCAATCTGT
Found at i:26867477 original size:46 final size:45
Alignment explanation
Indices: 26867289--26867483 Score: 212
Period size: 46 Copynumber: 4.2 Consensus size: 45
26867279 AAAATTTGGT
* * *
26867289 TTCTTCCATCCATCCCACTACAACTCAAAGGTATAGGATTTGTATC
1 TTCTTCAAT-CATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
* *
26867335 ATCTTCAATCCATCCCACTGCAACTCAGAGGTATAGAATTTGTATC
1 TTCTTCAAT-CATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
* * *
26867381 TTCTTCAATCTATCCCACTGTAGCTCACG-GGTATAGGATTTGTATA
1 TTCTTCAATC-ATCCCACTGCAACTCA-GAGGTATAGGATTTGTATC
* * * * **
26867427 TTCTTTAATACATCCCACTGCAGCTCAGGGGTACAGGATTTGTGGC
1 TTCTTCAAT-CATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
26867473 TTCTTCAATCA
1 TTCTTCAATCA
26867484 ATTGGTCTCG
Statistics
Matches: 128, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
45 4 0.03
46 122 0.95
47 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (45 bp):
TTCTTCAATCATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
Found at i:26868312 original size:21 final size:21
Alignment explanation
Indices: 26868288--26868334 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26868278 CCTTTGCGGG
26868288 TTTTTACCTTGGCTTTTCCTT
1 TTTTTACCTTGGCTTTTCCTT
* * **
26868309 TTTTTTCTTTTTCTTTTCCTT
1 TTTTTACCTTGGCTTTTCCTT
26868330 TTTTT
1 TTTTT
26868335 GTGTTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.19, G:0.04, T:0.74
Consensus pattern (21 bp):
TTTTTACCTTGGCTTTTCCTT
Found at i:26874391 original size:28 final size:28
Alignment explanation
Indices: 26874359--26874428 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
26874349 AATGAGATGG
26874359 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
26874387 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
26874415 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26874429 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:26881755 original size:28 final size:27
Alignment explanation
Indices: 26881697--26881766 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 27
26881687 AATGAGATTG
26881697 GCACTAAGTGTGCGAGTTTAATCGTATA
1 GCACTAAGTGTGCGAGTTTAATC-TATA
*
26881725 GCACTAAGTGTGCGAGTTTGAT-TATTAA
1 GCACTAAGTGTGCGAGTTTAATCTA-T-A
*
26881753 GCACTAATTGTGCG
1 GCACTAAGTGTGCG
26881767 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 35 0.92
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTTAATCTATA
Found at i:26883387 original size:14 final size:15
Alignment explanation
Indices: 26883368--26883424 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
26883358 AATCTTTAAG
26883368 GATATG-CAATCTTA
1 GATATGACAATCTTA
26883382 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
26883399 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
26883418 GATATGA
1 GATATGA
26883425 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:26883409 original size:36 final size:38
Alignment explanation
Indices: 26883368--26883446 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
26883358 AATCTTTAAG
26883368 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
26883404 GATATGCAATCTTAGATATGATATGCAATCTTAAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
26883444 GAT
1 GAT
26883447 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:26883415 original size:19 final size:19
Alignment explanation
Indices: 26883368--26883446 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
26883358 AATCTTTAAG
26883368 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26883387 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26883404 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26883423 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT--AGATAT
26883444 GAT
1 GAT
26883447 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26885121 original size:17 final size:17
Alignment explanation
Indices: 26885099--26885144 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
26885089 AGTGAGAAGC
26885099 TACGCCTTCGTGAGGTT
1 TACGCCTTCGTGAGGTT
26885116 TACGCCTTCGTGAGGTT
1 TACGCCTTCGTGAGGTT
*
26885133 TTCGCCTTCGTG
1 TACGCCTTCGTG
26885145 CAGGATAGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.09, C:0.26, G:0.28, T:0.37
Consensus pattern (17 bp):
TACGCCTTCGTGAGGTT
Found at i:26889120 original size:18 final size:19
Alignment explanation
Indices: 26889094--26889139 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
26889084 TTCTATTTCA
*
26889094 AAAAAAAAAGG-AAAAAAG
1 AAAAGAAAAGGAAAAAAAG
*
26889112 AAAAGAAAAGGAAAAAAAT
1 AAAAGAAAAGGAAAAAAAG
26889131 AAAAGAAAA
1 AAAAGAAAA
26889140 AAATGGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (19 bp):
AAAAGAAAAGGAAAAAAAG
Found at i:26889129 original size:14 final size:13
Alignment explanation
Indices: 26889096--26889142 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
26889086 CTATTTCAAA
26889096 AAAAAAAGGAAAA-
1 AAAAAAA-GAAAAG
*
26889109 AAGAAAAGAAAAGG
1 AAAAAAAGAAAA-G
*
26889123 AAAAAAATAAAAG
1 AAAAAAAGAAAAG
26889136 AAAAAAA
1 AAAAAAA
26889143 TGGAGAAGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 5 0.17
13 14 0.48
14 10 0.34
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (13 bp):
AAAAAAAGAAAAG
Found at i:26890232 original size:84 final size:84
Alignment explanation
Indices: 26890091--26890793 Score: 1054
Period size: 84 Copynumber: 8.4 Consensus size: 84
26890081 CAAAATTCAG
* *
26890091 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
26890156 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
26890175 CGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
26890240 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
26890259 CGCCTTAATCCCCT-AGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
26890323 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
26890342 CGCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
26890407 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
26890426 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
26890491 GTGAAGCAGATTGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
26890510 CACCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
26890570 GCGGAGTAGATCGATGACGACT
66 GTGGAGCAGATCGA--A-GACT
* * *
26890592 CACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
26890657 GTGGAGCAGATCAAAGA-T
66 GTGGAGCAGATCGAAGACT
* * *
26890675 CGCCTTAATCCCCTAAGTAGTAGGATAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
26890735 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
*
26890757 CGCCTTAA-CTCCCTAAGCAGTAGGGTAATAGGTTAAA
1 CGCCTTAATC-CCCTAAGCAGTAGGGTAACAGGTTAAA
26890794 GTATAGCAAA
Statistics
Matches: 565, Mismatches: 35, Indels: 35
0.89 0.06 0.06
Matches are distributed among these distances:
78 39 0.07
79 36 0.06
80 1 0.00
81 4 0.01
82 62 0.11
83 109 0.19
84 276 0.49
85 1 0.00
87 37 0.07
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:26890368 original size:167 final size:165
Alignment explanation
Indices: 26890091--26890793 Score: 1042
Period size: 167 Copynumber: 4.2 Consensus size: 165
26890081 CAAAATTCAG
* *
26890091 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
26890156 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGAT
*
26890221 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-A-GACT
126 CTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAGACGACT
*
26890259 CGCCTTAATCCCCT-AGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
26890323 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAAC-AG----GTTCGCAGAT
*
26890388 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-A-GACT
126 CTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAGACGACT
*
26890426 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
26890491 GTGAAGCAGATTGAAGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTAT
* *
26890556 CTCCCTAAGTAGTAGCGGAGTAGATCGATGACGACT
131 CTCCCTAAGCAGTAGCGGAGCAGATCGA-GACGACT
* * *
26890592 CACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
26890657 GTGGAGCAGATCAAAGA-TCGCCTTAATCCCCTAAGTAGTAGGATAACAGGTTCGCAGATCTTAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTAT
26890721 CTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
131 CTCCCTAAGCAGTAGCGGAGCAGATCGA-GACGACT
*
26890757 CGCCTTAA-CTCCCTAAGCAGTAGGGTAATAGGTTAAA
1 CGCCTTAATC-CCCTAAGCAGTAGGGTAACAGGTTAAA
26890794 GTATAGCAAA
Statistics
Matches: 495, Mismatches: 30, Indels: 23
0.90 0.05 0.04
Matches are distributed among these distances:
163 38 0.08
164 1 0.00
165 109 0.22
166 81 0.16
167 157 0.32
168 109 0.22
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (165 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTAT
CTCCCTAAGCAGTAGCGGAGCAGATCGAGACGACT
Found at i:26890899 original size:44 final size:44
Alignment explanation
Indices: 26890850--26891471 Score: 536
Period size: 44 Copynumber: 14.2 Consensus size: 44
26890840 TATTTCAGCA
* * *
26890850 TGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGTAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
26890894 TGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGCAGATT
* * * * **
26890938 TGACA-CTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATC-CCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAG-ATT
* *
26890982 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * * *
26891026 TGGCATCCTTGTGTTTATAGGGAACAAATCAAAGATAGAAGATC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
** * * * * **
26891070 TAACA-CTCCTGTGATTACAGTGAAGCAAATCGAAGATTTCAGCA--
1 TGGCATC-CCTGTGTTTATAGGGAA-CAAGTCGAAGATAGCAG-ATT
*
26891114 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * *
26891158 TGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * * * * ** *
26891202 TGACATTCTTGTGATTACAGCGAA-ACAGATCGAAGATTTCAACATT
1 TGGCATCCCTGTGTTTATAGGGAACA-AG-TCGAAGATAGC-AGATT
* *
26891248 T--CATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * *
26891290 TGGCATCCTTGTGTTTATAAGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * ** **
26891334 TGGCATTCCTATGCTTATAGCAAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAG-ATT
26891378 TGGCATCCCTGTGTTTATAGGGAACAAGT-GAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * *
26891421 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
26891465 TGGCATC
1 TGGCATC
26891472 TCCATTTCGA
Statistics
Matches: 459, Mismatches: 92, Indels: 54
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.00
42 16 0.03
43 66 0.14
44 317 0.69
45 52 0.11
46 7 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
Found at i:26891033 original size:132 final size:132
Alignment explanation
Indices: 26890820--26891466 Score: 1008
Period size: 132 Copynumber: 4.9 Consensus size: 132
26890810 CTTCATATGT
* * * *
26890820 TTACATCGAAGCGGATCGAATATTTCAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* * * *
26890885 TAGTAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGACACTCCTGT
66 TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGT
*
26890950 GC
131 GA
26890952 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* * * *
26891017 TAGTAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCAAAGATAGAAGATCTAACACTCCTGT
66 TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGT
26891082 GA
131 GA
* *
26891084 TTACAGTGAAGCAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* *
26891149 TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCTTGT
66 TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGT
26891214 GA
131 GA
* * ** *
26891216 TTACAGCGAAACAGATCGAAGATTTCAACATTTCATCCCTATGTTTATAGGGAACAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* * * *
26891281 TAGCAGATTTGGCATCCTTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTGGCATTCCTAT
66 TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGT
*
26891346 GC
131 GA
* *
26891348 TTATAGCAAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAG-TGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* *
26891412 TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATCTG
66 TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTG
26891467 GCATCTCCAT
Statistics
Matches: 474, Mismatches: 41, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
131 58 0.12
132 416 0.88
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (132 bp):
TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGT
GA
Found at i:26892068 original size:19 final size:19
Alignment explanation
Indices: 26892044--26892105 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
26892034 AATCTTTAAG
26892044 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26892063 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26892082 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
26892103 GAT
1 GAT
26892106 TTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26894616 original size:19 final size:19
Alignment explanation
Indices: 26894572--26894612 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26894562 AACAATTTAT
26894572 AAATAGATAAATAATAAGTA
1 AAATA-ATAAATAATAAGTA
*
26894592 AAATAATAAATGATAA-TA
1 AAATAATAAATAATAAGTA
26894610 AAA
1 AAA
26894613 ATAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (19 bp):
AAATAATAAATAATAAGTA
Found at i:26894895 original size:5 final size:5
Alignment explanation
Indices: 26894885--26894914 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
26894875 GAGTAATGAT
*
26894885 ATAAA ATAAA ATATA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
26894915 TGTGCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:26894988 original size:3 final size:3
Alignment explanation
Indices: 26894982--26895107 Score: 101
Period size: 3 Copynumber: 42.3 Consensus size: 3
26894972 ACAAAAAAAT
* * * * * * *
26894982 ATA ATA ATG ATA ATA ATA ATA GTA ATA ACA AAA ACA GTA ATA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
26895030 GTA ATA AAA ATA ATA GTA ATA GTA ATA ATA AAA ATA AAA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
26895077 ATA GTA ATA ATA ATA TTA ATA ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26895108 AATTAATTAA
Statistics
Matches: 92, Mismatches: 30, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
2 2 0.02
3 90 0.98
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:26898877 original size:18 final size:21
Alignment explanation
Indices: 26898854--26898904 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 21
26898844 AAGCAGCTGA
26898854 AAAAGAAAG-GAA-AG-AAAG
1 AAAAGAAAGAGAAGAGAAAAG
26898872 AAAAGAAAGAGAAGAGAAAAG
1 AAAAGAAAGAGAAGAGAAAAG
*
26898893 AAAA-AGAGAGAA
1 AAAAGAAAGAGAA
26898905 AATTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 9 0.31
19 3 0.10
20 9 0.31
21 8 0.28
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (21 bp):
AAAAGAAAGAGAAGAGAAAAG
Found at i:26898884 original size:15 final size:15
Alignment explanation
Indices: 26898864--26898906 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
26898854 AAAAGAAAGG
26898864 AAAGAAAGAAAAGAA
1 AAAGAAAGAAAAGAA
*
26898879 AGAGAAGAGAAAAGAA
1 AAAGAA-AGAAAAGAA
*
26898895 AAAGAGAGAAAA
1 AAAGAAAGAAAA
26898907 TTTTGCATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAGAA
Found at i:26898891 original size:16 final size:16
Alignment explanation
Indices: 26898864--26898906 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
26898854 AAAAGAAAGG
26898864 AAAGAA-AGAAAAGAA
1 AAAGAAGAGAAAAGAA
*
26898879 AGAGAAGAGAAAAGAA
1 AAAGAAGAGAAAAGAA
26898895 AAAG-AGAGAAAA
1 AAAGAAGAGAAAA
26898907 TTTTGCATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAAGAAGAGAAAAGAA
Found at i:26901333 original size:34 final size:34
Alignment explanation
Indices: 26901282--26901349 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
26901272 AAAATGAGAG
* * **
26901282 ATTATCTCTTAAGACTTCTTTGAAACATCCCACT
1 ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
*
26901316 ATTATCTCCTAAAACTTCTTAAAAACGTCCCACT
1 ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
26901350 CACTTCCCTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.35
Consensus pattern (34 bp):
ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
Found at i:26902778 original size:24 final size:24
Alignment explanation
Indices: 26902751--26902807 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
26902741 TGTATCTGGT
*
26902751 TATGAAAATACATCTGAATTTGTA
1 TATGAAAATACATCTGAATCTGTA
* ** *
26902775 TATGATAATATGTTTGAATCTGTA
1 TATGAAAATACATCTGAATCTGTA
*
26902799 TCTGAAAAT
1 TATGAAAAT
26902808 GTATCTGTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (24 bp):
TATGAAAATACATCTGAATCTGTA
Found at i:26904823 original size:20 final size:19
Alignment explanation
Indices: 26904772--26904824 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
26904762 ACTTGCTTAA
* *
26904772 AAACAATTTTAACATGATTG
1 AAAC-ATTTTAACTTAATTG
26904792 AAA-ATGTTTAACTTAATTG
1 AAACAT-TTTAACTTAATTG
26904811 AAACCATTTTAACT
1 AAA-CATTTTAACT
26904825 AGATTTTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 2 0.07
19 14 0.50
20 10 0.36
21 2 0.07
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (19 bp):
AAACATTTTAACTTAATTG
Found at i:26905139 original size:24 final size:24
Alignment explanation
Indices: 26905107--26905154 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26905097 AGAAAAATGG
*
26905107 GTCGTAGTCACAAATGCATGCGTT
1 GTCGCAGTCACAAATGCATGCGTT
26905131 GTCGCAGTCACAAATGCATGCGTT
1 GTCGCAGTCACAAATGCATGCGTT
26905155 TTCTCACTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (24 bp):
GTCGCAGTCACAAATGCATGCGTT
Found at i:26906365 original size:34 final size:34
Alignment explanation
Indices: 26906327--26906395 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
26906317 TAACATTCTT
26906327 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
*
26906361 TTATTTTATTTTAAGTAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
26906395 T
1 T
26906396 GAAGAAATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (34 bp):
TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
Found at i:26911645 original size:97 final size:96
Alignment explanation
Indices: 26911475--26911667 Score: 271
Period size: 97 Copynumber: 2.0 Consensus size: 96
26911465 TGGTGGCTTA
* * **
26911475 AATTTGCTTCACTGCAACTTCAGGAAGACATGATTCGCTGTTTTTTATCTGCTCCACTGCAACTT
1 AATTTGCTTCACTGCAACTTCAGGAAGACATGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
*
26911540 CAAGGAAACGAGATCTACAATTTCAGCCTAC
66 CAAGGAAACAAGATCTACAATTTCAGCCTAC
* * *
26911571 AATTCTGCTTCACTGCAATTTCAGGAAGAC-TAGATTCTCCGTCTTCGATCTGTTCCACTGCAAC
1 AATT-TGCTTCACTGCAACTTCAGGAAGACAT-GATTCGCCGTCTTCGATCTGCTCCACTGCAAC
* *
26911635 TTCAGGGAAACAAGATCTACAATTTTAGCCTAC
64 TTCAAGGAAACAAGATCTACAATTTCAGCCTAC
26911668 TCCACTACAA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
96 5 0.06
97 80 0.94
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (96 bp):
AATTTGCTTCACTGCAACTTCAGGAAGACATGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
CAAGGAAACAAGATCTACAATTTCAGCCTAC
Found at i:26911880 original size:134 final size:131
Alignment explanation
Indices: 26911574--26911907 Score: 488
Period size: 134 Copynumber: 2.5 Consensus size: 131
26911564 AGCCTACAAT
* * *
26911574 TCTGCTTCACTGCAATTTCAGGAAGACTAGATTCTCCGTCTTCGATCTGTTCCACTGCAACTTCA
1 TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
* * *
26911639 GGGAAACAAGATCTACAATTTTAGCCTACTCCACTACAACTTTAGGGGCTAGGTTGGTGGCTTAA
66 GGGAAACAAGATCTACAATTTCAGCCTACTCCACTACAACTTTAGGGGATAGGATGGTGGCTTAA
26911704 A
131 A
* * * * * * *
26911705 TCTGCTTCACTACAACTTCAAGAAGATTGGATTTGCTGTCTTTGATCTGCTCCACTGCAACTTCA
1 TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
* *
26911770 GGGAAACAAGATCTGTAGAATTTCAGCCTACTCCACTACAATTTTAGGGAGATAGGATGGTGGCT
66 GGGAAACAAGATC--TACAATTTCAGCCTACTCCACTACAACTTTAGGG-GATAGGATGGTGGCT
26911835 TAAA
128 TAAA
* *
26911839 TCTGCTTCACTGTAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
1 TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
26911904 GGGA
66 GGGA
26911908 GATAGGATGG
Statistics
Matches: 176, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
131 68 0.39
133 31 0.18
134 77 0.44
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (131 bp):
TCTGCTTCACTGCAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCA
GGGAAACAAGATCTACAATTTCAGCCTACTCCACTACAACTTTAGGGGATAGGATGGTGGCTTAA
A
Found at i:26924896 original size:21 final size:21
Alignment explanation
Indices: 26924859--26924898 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26924849 ACTATCATAA
*
26924859 TAATAATTTTTATTTTTGTTG
1 TAATAATTTTTAGTTTTGTTG
*
26924880 TAATAATTTTTGGTTTTGT
1 TAATAATTTTTAGTTTTGT
26924899 ATTTGCACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (21 bp):
TAATAATTTTTAGTTTTGTTG
Found at i:26925283 original size:27 final size:27
Alignment explanation
Indices: 26925229--26925283 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
26925219 ATTATACTAT
*
26925229 AATTATAAAATAATTAAATTGTACTTA
1 AATTATAAAATAATTAAATTGTAATTA
* *
26925256 AATTATTAAAAT-ATTGAATTTTAATTA
1 AATTA-TAAAATAATTAAATTGTAATTA
26925283 A
1 A
26925284 TTTTGATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTATAAAATAATTAAATTGTAATTA
Found at i:26926701 original size:36 final size:36
Alignment explanation
Indices: 26926648--26926719 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
26926638 CACAGAGAAT
26926648 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
**
26926684 GGGTTTAATTGTGTAAAGTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
26926720 TCATATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (36 bp):
GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
Found at i:26926729 original size:36 final size:36
Alignment explanation
Indices: 26926661--26926729 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
26926651 TTTAATTGCA
** *
26926661 TAAAGTCATTTCAATTTCTTAACGGGTTTAATTGTG
1 TAAAGTCATTTCAATTTCTTAACGCATATAATTGTG
*
26926697 TAAAGTCATTTCAATTTCTTAACTCATATAATT
1 TAAAGTCATTTCAATTTCTTAACGCATATAATT
26926730 TATATTCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (36 bp):
TAAAGTCATTTCAATTTCTTAACGCATATAATTGTG
Found at i:26927231 original size:6 final size:6
Alignment explanation
Indices: 26927173--26927239 Score: 80
Period size: 6 Copynumber: 11.0 Consensus size: 6
26927163 ATATACACTG
* * * *
26927173 TCAGAT ACAGAT ACAGAT ACAGAT TCAGTT TCAGAT TCAGAT TCAGAT
1 TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT
*
26927221 ATCAGAT TCAGTT TCAGAT
1 -TCAGAT TCAGAT TCAGAT
26927240 ATACAGAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
6 48 0.89
7 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (6 bp):
TCAGAT
Found at i:26930191 original size:39 final size:39
Alignment explanation
Indices: 26930148--26930257 Score: 157
Period size: 39 Copynumber: 2.8 Consensus size: 39
26930138 ACATATTTCT
* * * *
26930148 AGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCC
1 AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
* *
26930187 AGCACATAGCCTGCAGACCTTAAGTCCTGATATAATTCC
1 AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
*
26930226 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 AGCACATAGCCTGCGGACCTTAAGTCCGGATA
26930258 AACATCACTG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
Found at i:26930455 original size:39 final size:39
Alignment explanation
Indices: 26930401--26930514 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 39
26930391 ACAGACATAT
* * * *
26930401 TTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
26930440 TTCCAGCACATAGCCTGCAGACCTTAAGTCCTGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
26930479 TTCCAGCATATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
26930515 AACATCACTG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:26930591 original size:257 final size:257
Alignment explanation
Indices: 26930135--26930656 Score: 990
Period size: 257 Copynumber: 2.0 Consensus size: 257
26930125 GACTTTAGCC
*
26930135 CAGACATATTTCTAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
26930200 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
*
26930265 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTAACAATCATAGTTC
*
26930330 ATTTATTCCATTAGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
196 ATTTATTCAATTAGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
26930392 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
*
26930457 CAGACCTTAAGTCCTGATATAATTCCAGCATATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
26930522 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTAACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTAACAATCATAGTTC
*
26930587 ATTTATTCAATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
196 ATTTATTCAATTAGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
*
26930649 CATACATA
1 CAGACATA
26930657 AGAATATATG
Statistics
Matches: 259, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
257 259 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.29
Consensus pattern (257 bp):
CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTAACAATCATAGTTC
ATTTATTCAATTAGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
Found at i:26936788 original size:46 final size:46
Alignment explanation
Indices: 26936721--26936950 Score: 325
Period size: 46 Copynumber: 5.0 Consensus size: 46
26936711 GTGTGCTCTC
* * *
26936721 TGATATGGAATGTGTAAGACCATGGTTGAATGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
26936767 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
26936813 TGATATGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
26936859 TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*** *
26936905 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
26936951 AGAAAACGAG
Statistics
Matches: 168, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 131 0.78
47 37 0.22
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:26947930 original size:19 final size:19
Alignment explanation
Indices: 26947860--26947932 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 19
26947850 ACCCAATTAC
*
26947860 CCAACCCAATTGCCATTTA
1 CCAACCCAATTACCATTTA
** *
26947879 CCAACCCAATAAACTAAAATCTA
1 CCAACCCAAT----TACCATTTA
26947902 CCCAAACCCAATTACCATTTA
1 -CC-AACCCAATTACCATTTA
26947923 CCAACCCAAT
1 CCAACCCAAT
26947933 AAAACAAACA
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
19 18 0.44
20 2 0.05
21 6 0.15
23 5 0.12
24 2 0.05
25 8 0.20
ACGTcount: A:0.41, C:0.37, G:0.01, T:0.21
Consensus pattern (19 bp):
CCAACCCAATTACCATTTA
Found at i:26948344 original size:22 final size:20
Alignment explanation
Indices: 26948309--26948352 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
26948299 TTAAAGATTG
26948309 AAACTTTTTATTTAGCTGTTC
1 AAACTTTTTATTTA-CTGTTC
*
26948330 AAACTTTTTATTTTACTTTTC
1 AAACTTTTTA-TTTACTGTTC
26948351 AA
1 AA
26948353 CTTGGACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.27, C:0.14, G:0.05, T:0.55
Consensus pattern (20 bp):
AAACTTTTTATTTACTGTTC
Found at i:26948486 original size:8 final size:8
Alignment explanation
Indices: 26948475--26948514 Score: 71
Period size: 8 Copynumber: 4.9 Consensus size: 8
26948465 TATTTGCTGA
26948475 GGTTAATC
1 GGTTAATC
26948483 GGTTAATC
1 GGTTAATC
26948491 GGTTAAATC
1 GGTT-AATC
26948500 GGTTAATC
1 GGTTAATC
26948508 GGTTAAT
1 GGTTAAT
26948515 TTTTAACCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 23 0.74
9 8 0.26
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (8 bp):
GGTTAATC
Found at i:26948501 original size:17 final size:17
Alignment explanation
Indices: 26948475--26948513 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
26948465 TATTTGCTGA
26948475 GGTT-AATCGGTTAATC
1 GGTTAAATCGGTTAATC
26948491 GGTTAAATCGGTTAATC
1 GGTTAAATCGGTTAATC
26948508 GGTTAA
1 GGTTAA
26948514 TTTTTAACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (17 bp):
GGTTAAATCGGTTAATC
Found at i:26949031 original size:21 final size:21
Alignment explanation
Indices: 26948993--26949032 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
26948983 CGCGAAAATA
*
26948993 AAAAAAATCAAACAAAAAAAG
1 AAAAAAATCAAAAAAAAAAAG
*
26949014 AAAAAAAT-AAAAATAAAAA
1 AAAAAAATCAAAAAAAAAAA
26949033 TTTCACCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.85, C:0.05, G:0.03, T:0.07
Consensus pattern (21 bp):
AAAAAAATCAAAAAAAAAAAG
Found at i:26949949 original size:30 final size:30
Alignment explanation
Indices: 26949913--26949987 Score: 123
Period size: 30 Copynumber: 2.5 Consensus size: 30
26949903 AATATTGTAC
*
26949913 TTTCATTTTAGTCACCCAACTTTAGTAAAT
1 TTTCATTTTGGTCACCCAACTTTAGTAAAT
* *
26949943 TTTCATTTCGGTCACCTAACTTTAGTAAAT
1 TTTCATTTTGGTCACCCAACTTTAGTAAAT
26949973 TTTCATTTTGGTCAC
1 TTTCATTTTGGTCAC
26949988 TTATTTTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.25, C:0.20, G:0.09, T:0.45
Consensus pattern (30 bp):
TTTCATTTTGGTCACCCAACTTTAGTAAAT
Found at i:26955041 original size:46 final size:46
Alignment explanation
Indices: 26954863--26955085 Score: 203
Period size: 46 Copynumber: 4.8 Consensus size: 46
26954853 TTGTGTGCTT
*
26954863 GTGTAAGACATGTCTGGGACATGCATCAG-TCACACT-ATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCT-ACA-TGATGAGAGCCA
** * *
26954909 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGAGAGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACATGATGAGAGCCA
* * *
26954957 GTGTAAGACATGTCTGGGGCATGCATCAGCCT-CTTGATGTA-AGCCA
1 GTGTAAGACATGTCTGGGACATGCATC-GGCTACATGATG-AGAGCCA
* *
26955003 GTGTAAGACATGTCTGGGACATGCATCGGCTACATGAT--GTGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCA
*
26955047 GTATAAGACCATGTCTGGGACATGGCATCGGC-ACA-GATG
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATGATG
26955086 CGTGGCGTCA
Statistics
Matches: 147, Mismatches: 17, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
44 13 0.09
45 20 0.14
46 60 0.41
47 30 0.20
48 22 0.15
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCA
Found at i:26961373 original size:11 final size:11
Alignment explanation
Indices: 26961357--26961381 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26961347 TTGTAGAAAG
26961357 TATTTTATTAT
1 TATTTTATTAT
26961368 TATTTTATTAT
1 TATTTTATTAT
26961379 TAT
1 TAT
26961382 AACATGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:26962762 original size:47 final size:47
Alignment explanation
Indices: 26962529--26962802 Score: 199
Period size: 47 Copynumber: 6.0 Consensus size: 47
26962519 AGCTACATTA
*
26962529 TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGACATT-A-AC
* *
26962578 -AAGAG-CTAGTGTAAGA-CATGTC---GACAT-GCATCAGCTACATT-A-
1 TGAGAGAC-AGAGTAAGACCATGTCTGGGACATGGCATC-G--ACATTAAC
*
26962620 TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGACATT-A-AC
* *
26962669 -AAGAG-CTAGTGTAAGA-CATGTC---GACAT-GCATCAGCTACATT-A-
1 TGAGAGAC-AGAGTAAGACCATGTCTGGGACATGGCATC-G--ACATTAAC
26962711 TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGAC-TTAAC
1 TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGACATTAAC
* ** * *
26962757 GTGAGAGCCACTGTAAGACCATGTCTAGGACATGGCATCAACATTA
1 -TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGACATTA
26962803 TACCCTATGT
Statistics
Matches: 179, Mismatches: 16, Indels: 61
0.70 0.06 0.24
Matches are distributed among these distances:
43 36 0.20
44 28 0.16
45 7 0.04
46 8 0.04
47 62 0.35
48 38 0.21
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (47 bp):
TGAGAGACAGAGTAAGACCATGTCTGGGACATGGCATCGACATTAAC
Found at i:26962781 original size:91 final size:91
Alignment explanation
Indices: 26962491--26962749 Score: 518
Period size: 91 Copynumber: 2.8 Consensus size: 91
26962481 ATGTTTGTGT
26962491 GCTAGTGTAAGACATGTCGACATGCATCAGCTACATTATGAGAGACAGAGTAAGACCATGTCTGG
1 GCTAGTGTAAGACATGTCGACATGCATCAGCTACATTATGAGAGACAGAGTAAGACCATGTCTGG
26962556 GACATGGCATCGGCATTGAGACAAGA
66 GACATGGCATCGGCATTGAGACAAGA
26962582 GCTAGTGTAAGACATGTCGACATGCATCAGCTACATTATGAGAGACAGAGTAAGACCATGTCTGG
1 GCTAGTGTAAGACATGTCGACATGCATCAGCTACATTATGAGAGACAGAGTAAGACCATGTCTGG
26962647 GACATGGCATCGGCATTGAGACAAGA
66 GACATGGCATCGGCATTGAGACAAGA
26962673 GCTAGTGTAAGACATGTCGACATGCATCAGCTACATTATGAGAGACAGAGTAAGACCATGTCTGG
1 GCTAGTGTAAGACATGTCGACATGCATCAGCTACATTATGAGAGACAGAGTAAGACCATGTCTGG
26962738 GACATGGCATCG
66 GACATGGCATCG
26962750 ACTTAACGTG
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 168 1.00
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.21
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCGACATGCATCAGCTACATTATGAGAGACAGAGTAAGACCATGTCTGG
GACATGGCATCGGCATTGAGACAAGA
Found at i:26964327 original size:49 final size:49
Alignment explanation
Indices: 26964260--26964503 Score: 274
Period size: 49 Copynumber: 4.9 Consensus size: 49
26964250 AGCCAAAGCT
*
26964260 ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * *
26964309 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACA
** *
26964359 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * * * * * **
26964407 GTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATT
1 ---ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * **
26964459 ATCTGGTACACATAGTAGCCTGCAGTTAGTACTACATGCGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
26964504 TCATAATAGC
Statistics
Matches: 164, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
48 2 0.01
49 80 0.49
50 45 0.27
51 36 0.22
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
Found at i:26964501 original size:100 final size:101
Alignment explanation
Indices: 26964272--26964494 Score: 274
Period size: 101 Copynumber: 2.2 Consensus size: 101
26964262 CTGGTACGCG
* * ** * *
26964272 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACA---ATCTAGTACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
* * *
26964334 TTAGTACTACACACGTGACCTCACCATCTAATACACG
65 TTAGTACTACACACGCGACCTAACCATCTAATACACA
26964371 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
* ** **
26964436 TAGTACTACACATGCGACC-AATTATCTGGTACACA
66 TAGTACTACACACGCGACCTAACCATCTAATACACA
*
26964471 TAGTAGCCTGCAGTTAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
26964495 TGCGTGACCT
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
98 3 0.03
99 32 0.30
100 33 0.31
101 38 0.36
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
TAGTACTACACACGCGACCTAACCATCTAATACACA
Found at i:26973947 original size:91 final size:91
Alignment explanation
Indices: 26973790--26973968 Score: 232
Period size: 91 Copynumber: 2.0 Consensus size: 91
26973780 GTTGTTGCAA
* * *** * * *
26973790 GTTAATACACTGTCAGTAGGTTGCGAATGCACAATGGGTTTGCAAATAAAAGTTGACATTAAATT
1 GTTAATACACTATCAGTAGGTTGCGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
*
26973855 TGTGGATAAACCACTTGTGTTTGTAG
66 TGTGGATAAACCACTAGTGTTTGTAG
* * * * *
26973881 GTTAATACGCTATCAGTAGGTTGTGAATATACAACAAGTTTACAGATAAAAGCTGACAGTAGATT
1 GTTAATACACTATCAGTAGGTTGCGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
26973946 TGTGGATAAACCACTAGTGTTTG
66 TGTGGATAAACCACTAGTGTTTG
26973969 CAGATAAACT
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
91 74 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (91 bp):
GTTAATACACTATCAGTAGGTTGCGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
TGTGGATAAACCACTAGTGTTTGTAG
Found at i:26973974 original size:46 final size:46
Alignment explanation
Indices: 26973827--26973976 Score: 119
Period size: 46 Copynumber: 3.3 Consensus size: 46
26973817 TGCACAATGG
* * * * *
26973827 GTTTGCAAATAAAAGTTGACATTAAATTTGTGGATAAACCACTTGT
1 GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
* * * * * * * *
26973873 GTTTGTAGGTTAATACGCT-ATCAGTAG-GTTGTGAATATACAAC-A-A
1 GTTTGCA-GATAA-AAGCTGA-CAGTAGATTTGTGGATAAACCACTAGT
*
26973918 GTTTACAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
1 GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
26973964 GTTTGCAGATAAA
1 GTTTGCAGATAAA
26973977 CTACCAATAC
Statistics
Matches: 74, Mismatches: 23, Indels: 14
0.67 0.21 0.13
Matches are distributed among these distances:
43 10 0.14
44 17 0.23
45 6 0.08
46 18 0.24
47 16 0.22
48 7 0.09
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (46 bp):
GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACTAGT
Found at i:26974340 original size:20 final size:20
Alignment explanation
Indices: 26974315--26974360 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
26974305 TTAAGTGATA
*
26974315 TGGGTTTGTGTTTGAGGTCT
1 TGGGTTAGTGTTTGAGGTCT
26974335 TGGGTTAGTGTTTGAGGTCT
1 TGGGTTAGTGTTTGAGGTCT
26974355 TGGGTT
1 TGGGTT
26974361 CAACTCCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.07, C:0.04, G:0.41, T:0.48
Consensus pattern (20 bp):
TGGGTTAGTGTTTGAGGTCT
Found at i:26976107 original size:39 final size:39
Alignment explanation
Indices: 26976053--26976130 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
26976043 TGAGCTTACC
26976053 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
1 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
26976092 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
1 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
26976131 ATTGATTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (39 bp):
CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
Found at i:26976342 original size:18 final size:18
Alignment explanation
Indices: 26976321--26976367 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
26976311 TTTTAAATAT
26976321 AATTACTTTTAACAAAAA
1 AATTACTTTTAACAAAAA
*
26976339 AATTTATATTTTAACAAAAA
1 AA-TTA-CTTTTAACAAAAA
26976359 AA-TACTTTT
1 AATTACTTTT
26976368 TTCACTTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 4 0.16
18 4 0.16
19 3 0.12
20 14 0.56
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTACTTTTAACAAAAA
Found at i:26977952 original size:75 final size:74
Alignment explanation
Indices: 26977831--26977978 Score: 269
Period size: 75 Copynumber: 2.0 Consensus size: 74
26977821 ATATAGGATT
26977831 TTTTCCTATAAAATTCTCACCTTTTTACTTAAATTTGTTGTTAAAACCAAGTAATTGCTTAATAA
1 TTTTCCTATAAAATTCTCACCTTTTTACTTAAATTTGTTGTTAAAACCAAGTAATTGCTTAATAA
26977896 ATTAATGAA
66 ATTAATGAA
* *
26977905 TTTTCCTATATAATTCGTCACCTTTTTACTTAAATTTGTTGTTAAAACCAAGTAATTTCTTAATA
1 TTTTCCTATAAAATTC-TCACCTTTTTACTTAAATTTGTTGTTAAAACCAAGTAATTGCTTAATA
26977970 AATTAATGA
65 AATTAATGA
26977979 CATATATGAA
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 15 0.21
75 56 0.79
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.45
Consensus pattern (74 bp):
TTTTCCTATAAAATTCTCACCTTTTTACTTAAATTTGTTGTTAAAACCAAGTAATTGCTTAATAA
ATTAATGAA
Found at i:26988453 original size:54 final size:53
Alignment explanation
Indices: 26988395--26988516 Score: 190
Period size: 54 Copynumber: 2.3 Consensus size: 53
26988385 ACTGGCTTAA
* * *
26988395 TTCACATGCCCGTGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCC-TGTGACTCACTAACTTGG
**
26988449 TTCACACGCCTATGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
26988502 TTCACACGCCCGTGT
1 TTCACACGCCCGTGT
26988517 CCCAGGCTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 30 0.49
54 31 0.51
ACGTcount: A:0.18, C:0.32, G:0.22, T:0.28
Consensus pattern (53 bp):
TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
Found at i:26988508 original size:53 final size:54
Alignment explanation
Indices: 26988407--26988511 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 54
26988397 CACATGCCCG
* *
26988407 TGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGGTTCACACGCCTA
1 TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCCTA
26988461 TGTGTCAACCAGTGTGCTAGCCC-TGTGACTCACTAACTTGGTTCACACGCC
1 TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCC
26988512 CGTGTCCCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 27 0.55
54 22 0.45
ACGTcount: A:0.19, C:0.31, G:0.22, T:0.28
Consensus pattern (54 bp):
TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCCTA
Found at i:26997316 original size:30 final size:30
Alignment explanation
Indices: 26997275--26997335 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
26997265 CAAATATTCC
*
26997275 TAGATAGTGTGATTTCTCGTGTCGATCCGA
1 TAGATACTGTGATTTCTCGTGTCGATCCGA
26997305 TAGATACTGTGATTTCTCGTGTCGATCCGA
1 TAGATACTGTGATTTCTCGTGTCGATCCGA
26997335 T
1 T
26997336 CTTCCAAGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.38
Consensus pattern (30 bp):
TAGATACTGTGATTTCTCGTGTCGATCCGA
Found at i:26997800 original size:109 final size:109
Alignment explanation
Indices: 26997573--26997991 Score: 446
Period size: 109 Copynumber: 3.8 Consensus size: 109
26997563 AATCTTATTT
* * * * * * *
26997573 AGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATTTAGTATAATCAGTCGATATTGCTCGTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGC-A-C-TTCAGTAGAATCAGTAGATATTACTCGTT
* * * * **
26997638 TGAGAAACTATGCAGTAGAATCAATAGATATCACTTGTTTGAGCACTTT-
63 TGAG-CACT-TTCAATAGAATCAGTAGATATTGCTTG-TTGAGCACTTTC
** * * * * * *
26997687 AGTAGAATCAGTTTACATTGTTCATTTGAGCACATTCAGTAGGATCAGTAGATATTGCTTG-TTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGATATTACTCGTTTG
* *
26997751 AGCACTTTCAGTAGGATCAGTAGATATTGCTTGTTGAGCACTTTC
65 AGCACTTTCAATAGAATCAGTAGATATTGCTTGTTGAGCACTTTC
* * * *
26997796 AGTAGAATCAATAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGAAATTACTCATTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGATATTACTCGTTTGA
* * * *
26997861 GCACATTCAATAGGATTAGTAGATATTGCTCGTTGAGCACTTTC
66 GCACTTTCAATAGAATCAGTAGATATTGCTTGTTGAGCACTTTC
* * *
26997905 AGTAGAATTAGTAGATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGACATTACTCGTTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGATATTACTCGTTTG
26997970 AGCACTTTCAATAGAATCAGTA
65 AGCACTTTCAATAGAATCAGTA
26997992 TTCTTTTCTT
Statistics
Matches: 259, Mismatches: 43, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
108 33 0.13
109 123 0.47
110 49 0.19
111 5 0.02
112 24 0.09
113 1 0.00
114 24 0.09
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (109 bp):
AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGATATTACTCGTTTGA
GCACTTTCAATAGAATCAGTAGATATTGCTTGTTGAGCACTTTC
Found at i:26997812 original size:145 final size:146
Alignment explanation
Indices: 26997579--26997991 Score: 515
Period size: 145 Copynumber: 2.8 Consensus size: 146
26997569 ATTTAGTATA
* * * *
26997579 ATCAGTGGATAATGCTCGTTTGAGCAAGCATTT-AGTATAATCAGTCGATATTGCTCGTTTGAGA
1 ATCAGTAGATATTGCTCG-TTGAGC-A-C-TTTCAGTAGAATCAGTAGATATTGCTCGTTTGAG-
* * * * ** * **
26997643 AACTATGCAGTAGAATCAATAGATATCACTTGTTTGAGCACTTTAGTAGAATCAGTTTACATTGT
61 CACT-TTCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAGTAGAAATTAC
* *
26997708 TCATTTGAGCACATTCAGTAGG
125 TCATTTCAGCACATTCAATAGG
* * *
26997730 ATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCACTT
1 ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
* *
26997794 TCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGAAATTACTCATTT
66 TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAGTAGAAATTACTCATTT
26997859 CAGCACATTCAATAGG
131 CAGCACATTCAATAGG
* *
26997875 ATTAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATTAGTAGATATTGCTCGTTTGAGCACTT
1 ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
* * * *
26997940 TTAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATAGAATCAGTA
66 TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTT-AGTAGAATCAGTA
26997992 TTCTTTTCTT
Statistics
Matches: 228, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
145 119 0.52
146 46 0.20
147 20 0.09
148 21 0.09
149 1 0.00
150 6 0.03
151 15 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (146 bp):
ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAGTAGAAATTACTCATTT
CAGCACATTCAATAGG
Found at i:26997882 original size:37 final size:37
Alignment explanation
Indices: 26997573--26997991 Score: 391
Period size: 36 Copynumber: 11.4 Consensus size: 37
26997563 AATCTTATTT
* * * *
26997573 AGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATTT-
1 AGTAGAATCAGTAGATATTACTCGTTTGAGC-A-C-TTTC
* * * * *
26997612 AGTATAATCAGTCGATATTGCTCGTTTGAGAAACTATGC
1 AGTAGAATCAGTAGATATTACTCGTTTGAG-CACT-TTC
* * *
26997651 AGTAGAATCAATAGATATCACTTGTTTGAGCACTTT-
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
** * ** * *
26997687 AGTAGAATCAGTTTACATTGTTCATTTGAGCACATTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * *
26997724 AGTAGGATCAGTAGATATTGCTTG-TTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * *
26997760 AGTAGGATCAGTAGATATTGCTTG-TTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* *
26997796 AGTAGAATCAATAGATATTGCTCGTTTGAGCAC-TTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * * *
26997832 AGTAGAATCAGTAGAAATTACTCATTTCAGCACATTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * * *
26997869 AATAGGATTAGTAGATATTGCTCG-TTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
* * *
26997905 AGTAGAATTAGTAGATATTGCTCGTTTGAGCACTTTT
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
*
26997942 AGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTC
1 AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
*
26997979 AATAGAATCAGTA
1 AGTAGAATCAGTA
26997992 TTCTTTTCTT
Statistics
Matches: 319, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
36 157 0.49
37 104 0.33
38 5 0.02
39 53 0.17
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (37 bp):
AGTAGAATCAGTAGATATTACTCGTTTGAGCACTTTC
Found at i:26998995 original size:17 final size:17
Alignment explanation
Indices: 26998962--26998995 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26998952 AACTTACTTT
*
26998962 TTAACTTTTTTACAAAA
1 TTAACTTTTTAACAAAA
*
26998979 TTAACTTTTTAATAAAA
1 TTAACTTTTTAACAAAA
26998996 ATTATAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAACTTTTTAACAAAA
Found at i:27025891 original size:46 final size:46
Alignment explanation
Indices: 27025823--27026010 Score: 216
Period size: 46 Copynumber: 4.1 Consensus size: 46
27025813 TTATCTTCGA
* * * * * *
27025823 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* ** * **
27025869 CATGTTGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTAT
* *
27025916 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
*
27025962 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
27026008 CAT
1 CAT
27026011 AGAGCACACT
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
45 1 0.01
46 79 0.66
47 40 0.33
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:27026002 original size:93 final size:93
Alignment explanation
Indices: 27025828--27026002 Score: 244
Period size: 93 Copynumber: 1.9 Consensus size: 93
27025818 TTCGACATGA
* * * * * *
27025828 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCATTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACAGTTTCTATCAGGTTGCCATGGTATCATTCAAC
**
27025893 CATGGTCTTATTCATTTCCCCGTCACGT
66 CATGGTCTTACACATTTCCCCGTCACGT
* *
27025921 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAACCATGGTCTTACACAGTTTC-TATCAGGTTGCCATGGTATCATTCAA
27025985 CCATGGTCTTACACATTT
65 CCATGGTCTTACACATTT
27026003 TCTATCATAG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.39
Consensus pattern (93 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACAGTTTCTATCAGGTTGCCATGGTATCATTCAAC
CATGGTCTTACACATTTCCCCGTCACGT
Found at i:27028106 original size:11 final size:11
Alignment explanation
Indices: 27028090--27028141 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
27028080 TATACTAAAT
27028090 AAATAATAATA
1 AAATAATAATA
*
27028101 AAATAAT-ATT
1 AAATAATAATA
* *
27028111 AAATATCTCATA
1 AAATA-ATAATA
*
27028123 AAATATTAATA
1 AAATAATAATA
27028134 AAATAATA
1 AAATAATA
27028142 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:27028665 original size:28 final size:28
Alignment explanation
Indices: 27028634--27028693 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
27028624 CGTGTCAATG
27028634 GCCCCTGTCCCTCACACGGCCACGACAC
1 GCCCCTGTCCCTCACACGGCCACGACAC
* *
27028662 GCCCGTTTCCCTCACACGGCCACGACAC
1 GCCCCTGTCCCTCACACGGCCACGACAC
27028690 GCCC
1 GCCC
27028694 GTTTCCTAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.17, C:0.53, G:0.18, T:0.12
Consensus pattern (28 bp):
GCCCCTGTCCCTCACACGGCCACGACAC
Found at i:27028694 original size:28 final size:28
Alignment explanation
Indices: 27028641--27028699 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
27028631 ATGGCCCCTG
27028641 TCCCTCACACGGCCACGACACGCCCGTT
1 TCCCTCACACGGCCACGACACGCCCGTT
27028669 TCCCTCACACGGCCACGACACGCCCGTT
1 TCCCTCACACGGCCACGACACGCCCGTT
27028697 TCC
1 TCC
27028700 TAGCCCGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.51, G:0.17, T:0.15
Consensus pattern (28 bp):
TCCCTCACACGGCCACGACACGCCCGTT
Found at i:27029757 original size:47 final size:46
Alignment explanation
Indices: 27029653--27029776 Score: 130
Period size: 47 Copynumber: 2.7 Consensus size: 46
27029643 GATAAGGTGC
** *
27029653 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATTTCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCATATCTC-AGT
27029700 CGATGCCATGTCCCAAACATGGTCTTACACTAACT-ATCATCTC-GT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCAT-ATCTCAGT
* *
27029745 CGCTGATG-CATGTCCTAGACAT-GTCTTACACT
1 --C-GATGCCATGTCCCAAACATGGTCTTACACT
27029777 GGCTTACGTC
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.03
46 12 0.18
47 50 0.74
48 4 0.06
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAACTCATATCTCAGT
Found at i:27036879 original size:13 final size:13
Alignment explanation
Indices: 27036861--27036888 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
27036851 AGAAGGGTCT
27036861 TTTTCATTCATTA
1 TTTTCATTCATTA
27036874 TTTTCATTCATTA
1 TTTTCATTCATTA
27036887 TT
1 TT
27036889 GTAAATTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTCATTCATTA
Found at i:27042056 original size:14 final size:14
Alignment explanation
Indices: 27042037--27042071 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
27042027 GTGTATATGA
27042037 TGGTAATGTTCACT
1 TGGTAATGTTCACT
*
27042051 TGGTAATGTTGACT
1 TGGTAATGTTCACT
*
27042065 TTGTAAT
1 TGGTAAT
27042072 ATATATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.46
Consensus pattern (14 bp):
TGGTAATGTTCACT
Found at i:27046865 original size:18 final size:18
Alignment explanation
Indices: 27046842--27046877 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27046832 TTTATGCTTA
27046842 TAGTAAATGATTTTTTAT
1 TAGTAAATGATTTTTTAT
27046860 TAGTAAATGATTTTTTAT
1 TAGTAAATGATTTTTTAT
27046878 GTGTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (18 bp):
TAGTAAATGATTTTTTAT
Found at i:27048471 original size:40 final size:40
Alignment explanation
Indices: 27048427--27048538 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
27048417 GGATATAGCT
* * * **
27048427 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATGTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTA
*
27048467 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTA
* *
27048507 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
27048539 TTATCATCCG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTA
Found at i:27053508 original size:96 final size:96
Alignment explanation
Indices: 27053344--27053538 Score: 381
Period size: 96 Copynumber: 2.0 Consensus size: 96
27053334 CATGTTTGAG
*
27053344 ATGGTTAGTTCAAATTCTACTCATCCTATAGATTAGACTTAGGATTTTGAGGTTGAAATTCGGCC
1 ATGGTTAGTTCAAATTCTACTCATCCTATAGATTAGACTTAGGATTTTGAGGTTGAAATTCGACC
27053409 AAGAAGCTTGAAACTCTTAGTAGATGTGTTA
66 AAGAAGCTTGAAACTCTTAGTAGATGTGTTA
27053440 ATGGTTAGTTCAAATTCTACTCATCCTATAGATTAGACTTAGGATTTTGAGGTTGAAATTCGACC
1 ATGGTTAGTTCAAATTCTACTCATCCTATAGATTAGACTTAGGATTTTGAGGTTGAAATTCGACC
27053505 AAGAAGCTTGAAACTCTTAGTAGATGTGTTA
66 AAGAAGCTTGAAACTCTTAGTAGATGTGTTA
27053536 ATG
1 ATG
27053539 TCATTAAAAT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 98 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (96 bp):
ATGGTTAGTTCAAATTCTACTCATCCTATAGATTAGACTTAGGATTTTGAGGTTGAAATTCGACC
AAGAAGCTTGAAACTCTTAGTAGATGTGTTA
Found at i:27053598 original size:47 final size:47
Alignment explanation
Indices: 27053537--27053629 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
27053527 GATGTGTTAA
27053537 TGTCATTAAAATGGATAGTAATGTAGGATATGGTGAGTGGTTAATTT
1 TGTCATTAAAATGGATAGTAATGTAGGATATGGTGAGTGGTTAATTT
27053584 TGTCATTAAAATGGATAGTAATGTAGGATATGGTGAGTGGTTAATT
1 TGTCATTAAAATGGATAGTAATGTAGGATATGGTGAGTGGTTAATT
27053630 GCTTTTAACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.38
Consensus pattern (47 bp):
TGTCATTAAAATGGATAGTAATGTAGGATATGGTGAGTGGTTAATTT
Found at i:27054798 original size:27 final size:27
Alignment explanation
Indices: 27054765--27054915 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
27054755 AAACTGTACA
*
27054765 GCACTAAGTGTGCGATATGACTATGTT
1 GCACTAAGTGTGCGATATGACTATGTG
* *
27054792 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATATGACTATG-TG
* *
27054819 GCACTAAGTGTGCGAAATGA-TCATGCG
1 GCACTAAGTGTGCGATATGACT-ATGTG
* *
27054846 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TATGACTATGTG
* * *
27054874 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATATGACTATGTG
27054901 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
27054916 GTTGATTATA
Statistics
Matches: 109, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 1 0.01
27 85 0.78
28 22 0.20
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATATGACTATGTG
Found at i:27054879 original size:82 final size:81
Alignment explanation
Indices: 27054765--27054915 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
27054755 AAACTGTACA
* *
27054765 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
27054829 TGCGAAATGATCATGCG
65 TGCGAAATGATCATGCG
* ** *
27054846 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
27054911 TGCGA
65 TGCGA
27054916 GTTGATTATA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGATCATGCG
Found at i:27054937 original size:27 final size:27
Alignment explanation
Indices: 27054764--27054941 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
27054754 TAAACTGTAC
*
27054764 AGCACTAAGTGTGCGA-TATGACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* ** *
27054791 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
** * *
27054817 ATGCACTAAGTGTGCGAAATGATCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* *
27054845 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
* *
27054873 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* *
27054900 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* *
27054927 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
27054942 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 103 0.83
28 21 0.17
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:27056388 original size:197 final size:197
Alignment explanation
Indices: 27056053--27056423 Score: 733
Period size: 197 Copynumber: 1.9 Consensus size: 197
27056043 TTGACTAATA
27056053 AACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAG
1 AACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAG
27056118 TTTCTGGGAAAAATTACGAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGA
66 TTTCTGGGAAAAATTACGAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGA
27056183 CTAGTACACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGCGACTAGTACACAGATTGGGC
131 CTAGTACACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGCGACTAGTACACAGATTGGGC
27056248 AG
196 AG
27056250 AACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAG
1 AACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAG
27056315 TTTCTGGGAAAAATTACGAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGA
66 TTTCTGGGAAAAATTACGAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGA
*
27056380 CTAGTACACAGATTGGGCAGTGTCTGGAAAATAAATTTTGTAAG
131 CTAGTACACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAG
27056424 GGGTTAAAGC
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
197 173 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (197 bp):
AACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAG
TTTCTGGGAAAAATTACGAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGA
CTAGTACACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGCGACTAGTACACAGATTGGGC
AG
Found at i:27057389 original size:23 final size:23
Alignment explanation
Indices: 27057331--27057447 Score: 103
Period size: 23 Copynumber: 5.0 Consensus size: 23
27057321 GAGCCATGAT
**
27057331 CGGTAAGCTTCTCCTGAGTTGATGAA
1 CGGTAAGC-TCTATTGAGTTGA--AA
*
27057357 CAGTAAGCTCTATTGAGTTGAAA
1 CGGTAAGCTCTATTGAGTTGAAA
* *
27057380 CGGTAAGCTCTATCGAGCTG-AA
1 CGGTAAGCTCTATTGAGTTGAAA
* *
27057402 CAGTAAGCTC-ATACGAGTTGAAA
1 CGGTAAGCTCTAT-TGAGTTGAAA
* *
27057425 CGGTAAGCTCCAATGAGTTGAAA
1 CGGTAAGCTCTATTGAGTTGAAA
27057448 ATAGTAAGCT
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
21 2 0.03
22 17 0.22
23 39 0.51
24 1 0.01
25 11 0.14
26 7 0.09
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (23 bp):
CGGTAAGCTCTATTGAGTTGAAA
Found at i:27057492 original size:73 final size:73
Alignment explanation
Indices: 27057402--27057640 Score: 469
Period size: 73 Copynumber: 3.3 Consensus size: 73
27057392 TCGAGCTGAA
27057402 CAGTAAGCTCATACGAGTTGAAACGGTAAGCTCCAATGAGTTGAAAATAGTAAGCTCTTACGATT
1 CAGTAAGCTCATACGAGTTGAAACGGTAAGCTCCAATGAGTTGAAAATAGTAAGCTCTTACGATT
27057467 CGATATAT
66 CGATATAT
27057475 CAGTAAGCTCATACGAGTTGAAACGGTAAGCTCCAATGAGTTGAAAATAGTAAGCTCTTACGATT
1 CAGTAAGCTCATACGAGTTGAAACGGTAAGCTCCAATGAGTTGAAAATAGTAAGCTCTTACGATT
27057540 CGATATAT
66 CGATATAT
*
27057548 CAGTAAGCTCATACGAGTTGAAACGGTAAGCTCCAATGAGTTGCAAATAGTAAGCTCTTACGATT
1 CAGTAAGCTCATACGAGTTGAAACGGTAAGCTCCAATGAGTTGAAAATAGTAAGCTCTTACGATT
27057613 CGATATAT
66 CGATATAT
27057621 CAGTAAGCTCATACGAGTTG
1 CAGTAAGCTCATACGAGTTG
27057641 TGGTGAGTCT
Statistics
Matches: 165, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 165 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (73 bp):
CAGTAAGCTCATACGAGTTGAAACGGTAAGCTCCAATGAGTTGAAAATAGTAAGCTCTTACGATT
CGATATAT
Found at i:27057494 original size:50 final size:49
Alignment explanation
Indices: 27057403--27057640 Score: 183
Period size: 50 Copynumber: 4.9 Consensus size: 49
27057393 CGAGCTGAAC
* * *
27057403 AGTAAGCTCATACGAGTTGAA-A-CGGTAAGCTCCA-ATGAGTTGAAAAT
1 AGTAAGCTCTTACGAGTTGAATATCAGTAAGCT-CATACGAGTTGAAAAT
*
27057450 AGTAAGCTCTTACGA-TTCGATATATCAGTAAGCTCATACGAGTTG-AAAC
1 AGTAAGCTCTTACGAGTT-GA-ATATCAGTAAGCTCATACGAGTTGAAAAT
* ** * * * *
27057499 GGTAAGCTCCAATGAGTTGAAAAT-AGTAAGCTCTTACGA-TTCGATATAT
1 AGTAAGCTCTTACGAGTTGAATATCAGTAAGCTCATACGAGTT-GA-AAAT
* * * *
27057548 CAGTAAGCTCATACGAGTTGAA-A-CGGTAAGCTCCA-ATGAGTTGCAAAT
1 -AGTAAGCTCTTACGAGTTGAATATCAGTAAGCT-CATACGAGTTGAAAAT
27057596 AGTAAGCTCTTACGA-TTCGATATATCAGTAAGCTCATACGAGTTG
1 AGTAAGCTCTTACGAGTT-GA-ATATCAGTAAGCTCATACGAGTTG
27057641 TGGTGAGTCT
Statistics
Matches: 149, Mismatches: 24, Indels: 33
0.72 0.12 0.16
Matches are distributed among these distances:
46 6 0.04
47 47 0.32
48 8 0.05
49 36 0.24
50 52 0.35
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (49 bp):
AGTAAGCTCTTACGAGTTGAATATCAGTAAGCTCATACGAGTTGAAAAT
Found at i:27057507 original size:23 final size:23
Alignment explanation
Indices: 27057346--27057640 Score: 194
Period size: 23 Copynumber: 12.3 Consensus size: 23
27057336 AGCTTCTCCT
*
27057346 GAGTTGATGAACAGTAAGCTC-TATT
1 GAGTTGA--AACAGTAAGCTCATA-C
*
27057371 GAGTTGAAACGGTAAGCTC-TATC
1 GAGTTGAAACAGTAAGCTCATA-C
*
27057394 GAGCTG-AACAGTAAGCTCATAC
1 GAGTTGAAACAGTAAGCTCATAC
* *
27057416 GAGTTGAAACGGTAAGCTCCA-AT
1 GAGTTGAAACAGTAAGCT-CATAC
* *
27057439 GAGTTGAAAATAGTAAGCTCTTAC
1 GAGTTG-AAACAGTAAGCTCATAC
27057463 GA-TTCGATATATCAGTAAGCTCATAC
1 GAGTT-GA-A-A-CAGTAAGCTCATAC
* *
27057489 GAGTTGAAACGGTAAGCTCCA-AT
1 GAGTTGAAACAGTAAGCT-CATAC
* *
27057512 GAGTTGAAAATAGTAAGCTCTTAC
1 GAGTTG-AAACAGTAAGCTCATAC
27057536 GA-TTCGATATATCAGTAAGCTCATAC
1 GAGTT-GA-A-A-CAGTAAGCTCATAC
* *
27057562 GAGTTGAAACGGTAAGCTCCA-AT
1 GAGTTGAAACAGTAAGCT-CATAC
* *
27057585 GAGTTGCAAATAGTAAGCTCTTAC
1 GAGTTG-AAACAGTAAGCTCATAC
27057609 GA-TTCGATATATCAGTAAGCTCATAC
1 GAGTT-GA-A-A-CAGTAAGCTCATAC
27057635 GAGTTG
1 GAGTTG
27057641 TGGTGAGTCT
Statistics
Matches: 215, Mismatches: 29, Indels: 51
0.73 0.10 0.17
Matches are distributed among these distances:
22 17 0.08
23 80 0.37
24 53 0.25
25 12 0.06
26 47 0.22
27 6 0.03
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (23 bp):
GAGTTGAAACAGTAAGCTCATAC
Found at i:27065046 original size:28 final size:27
Alignment explanation
Indices: 27065014--27065069 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
27065004 TAGTGGAAGA
27065014 GCGGTATTTCTTTTACAGATATAGATG
1 GCGGTATTTCTTTTACAGATATAGATG
* *
27065041 NGCGGTTTTTCTTTTCCAGATATAGATG
1 -GCGGTATTTCTTTTACAGATATAGATG
27065069 G
1 G
27065070 TTTACTAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.41
Consensus pattern (27 bp):
GCGGTATTTCTTTTACAGATATAGATG
Found at i:27067649 original size:30 final size:30
Alignment explanation
Indices: 27067609--27067669 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
27067599 CACGGGCTAG
* *
27067609 CACATGGGCGTGTGGCCTGCCCGTGTGCAT
1 CACATAGGCGTGTGGCCTACCCGTGTGCAT
*
27067639 CACATAGGCGTGTGGCCTACCTGTGTGCAT
1 CACATAGGCGTGTGGCCTACCCGTGTGCAT
27067669 C
1 C
27067670 CTGAAAACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.13, C:0.30, G:0.33, T:0.25
Consensus pattern (30 bp):
CACATAGGCGTGTGGCCTACCCGTGTGCAT
Found at i:27068482 original size:13 final size:13
Alignment explanation
Indices: 27068464--27068490 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
27068454 AGAGTAATCG
27068464 CACACGGGCGTGT
1 CACACGGGCGTGT
27068477 CACACGGGCGTGT
1 CACACGGGCGTGT
27068490 C
1 C
27068491 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:27070902 original size:3 final size:3
Alignment explanation
Indices: 27070894--27070925 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
27070884 AAGAAAGATA
27070894 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
27070926 ACTCAATGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:27071001 original size:23 final size:22
Alignment explanation
Indices: 27070973--27071050 Score: 79
Period size: 22 Copynumber: 3.5 Consensus size: 22
27070963 TGATAATAGT
27070973 AAAAAAAATACGAAAGAGAAAAGA
1 AAAAAAAATA-GAAAGAGAAAA-A
*
27070997 AAAAAAAATAGAAATAGAAAAA
1 AAAAAAAATAGAAAGAGAAAAA
* *
27071019 AATAAAAATA-AAA-ATAAAAA
1 AAAAAAAATAGAAAGAGAAAAA
27071039 TAAAAAATAATA
1 -AAAAAA-AATA
27071051 AAAATATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.12
21 8 0.17
22 14 0.29
23 10 0.21
24 10 0.21
ACGTcount: A:0.79, C:0.01, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAAAAAATAGAAAGAGAAAAA
Found at i:27071019 original size:16 final size:15
Alignment explanation
Indices: 27070997--27071116 Score: 90
Period size: 16 Copynumber: 8.1 Consensus size: 15
27070987 AGAGAAAAGA
*
27070997 AAAAAAAATAGAAAT
1 AAAAAAAATAAAAAT
27071012 AGAAAAAAATAAAAAT
1 A-AAAAAAATAAAAAT
27071028 ---AAAAATAAAAAT
1 AAAAAAAATAAAAAT
27071040 AAAAAATAATAAAAAT
1 AAAAAA-AATAAAAAT
*
27071056 ATATAAAAATAATAAAT
1 A-AAAAAAATAA-AAAT
* * *
27071073 --AATAAATATATAT
1 AAAAAAAATAAAAAT
*
27071086 -AAAAAATTAAAATAT
1 AAAAAAAATAAAA-AT
*
27071101 AAAAAAATTAAAAAT
1 AAAAAAAATAAAAAT
27071116 A
1 A
27071117 TAAGTATAAG
Statistics
Matches: 85, Mismatches: 10, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
12 12 0.14
13 3 0.04
14 13 0.15
15 9 0.11
16 40 0.47
17 8 0.09
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.22
Consensus pattern (15 bp):
AAAAAAAATAAAAAT
Found at i:27071025 original size:6 final size:6
Alignment explanation
Indices: 27070996--27071116 Score: 81
Period size: 6 Copynumber: 20.0 Consensus size: 6
27070986 AAGAGAAAAG
* *
27070996 AAAA-A AAAATA GAAAT- AGAA-A AAAATA AAAATA AAAATA AAAATAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A
* * * *
27071042 AAAATA ATAAA-A ATATATA AAAATA ATAAATA ATAAATA TATATAA AAAATT
1 AAAATA A-AAATA A-AAATA AAAATA A-AAATA A-AAATA AAAAT-A AAAATA
* *
27071094 AAAATA TAAA-A AAATTA AAAATA
1 AAAATA AAAATA AAAATA AAAATA
27071117 TAAGTATAAG
Statistics
Matches: 91, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
5 12 0.13
6 52 0.57
7 27 0.30
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:27071032 original size:7 final size:7
Alignment explanation
Indices: 27071015--27071116 Score: 66
Period size: 8 Copynumber: 14.1 Consensus size: 7
27071005 TAGAAATAGA
27071015 AAAAAAT
1 AAAAAAT
27071022 -AAAAAT
1 AAAAAAT
27071028 -AAAAAT
1 AAAAAAT
*
27071034 AAAAATAA
1 AAAAA-AT
27071042 AAAATAAT
1 AAAA-AAT
27071050 AAAAATAT
1 AAAAA-AT
27071058 ATAAAAAT
1 A-AAAAAT
*
27071066 AATAAAT
1 AAAAAAT
*
27071073 AATAAAT
1 AAAAAAT
* *
27071080 -ATATAT
1 AAAAAAT
27071086 AAAAAATT
1 AAAAAA-T
*
27071094 AAAATAT
1 AAAAAAT
27071101 AAAAAAAT
1 -AAAAAAT
*
27071109 TAAAAAT
1 AAAAAAT
27071116 A
1 A
27071117 TAAGTATAAG
Statistics
Matches: 77, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
6 17 0.22
7 27 0.35
8 28 0.36
9 5 0.06
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAAAT
Found at i:27071061 original size:26 final size:27
Alignment explanation
Indices: 27071008--27071116 Score: 104
Period size: 26 Copynumber: 4.2 Consensus size: 27
27070998 AAAAAAATAG
*
27071008 AAATAGAAAAA-AATAAAAATAAAAATAA
1 AAATAGAAAAATAATAAAAAT--ATATAA
27071036 AAATA-AAAAATAATAAAAATATATAA
1 AAATAGAAAAATAATAAAAATATATAA
* *
27071062 AAATA-ATAAATAATAAATATATATAA
1 AAATAGAAAAATAATAAAAATATATAA
** *
27071088 AAA-ATTAAAAT-ATAAAAAAAT-TAA
1 AAATAGAAAAATAATAAAAATATATAA
27071112 AAATA
1 AAATA
27071117 TAAGTATAAG
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
24 6 0.08
25 10 0.14
26 36 0.51
27 5 0.07
28 14 0.20
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.23
Consensus pattern (27 bp):
AAATAGAAAAATAATAAAAATATATAA
Found at i:27071104 original size:13 final size:13
Alignment explanation
Indices: 27071015--27071105 Score: 73
Period size: 13 Copynumber: 6.9 Consensus size: 13
27071005 TAGAAATAGA
*
27071015 AAAAAATAAAAAT
1 AAAATATAAAAAT
27071028 AAAA-ATAAAAAT
1 AAAATATAAAAAT
*
27071040 AAAAAATAATAAA-
1 AAAATATAA-AAAT
*
27071053 AATATATAAAAAT
1 AAAATATAAAAAT
27071066 AATAA-ATAATAAAT
1 AA-AATATAA-AAAT
*
27071080 -ATATATAAAAAATT
1 AAAATAT-AAAAA-T
27071094 AAAATATAAAAA
1 AAAATATAAAAA
27071106 AATTAAAAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
12 16 0.25
13 27 0.42
14 16 0.25
15 5 0.08
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATATAAAAAT
Found at i:27071182 original size:22 final size:20
Alignment explanation
Indices: 27071152--27071203 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
27071142 AATTAATTAG
*
27071152 TAAAATAAAAATAAATAATA
1 TAAAATAAAAATAAATAAAA
27071172 TAACAATTAAAAATAAATAAAA
1 TAA-AA-TAAAAATAAATAAAA
27071194 TAAAATAAAA
1 TAAAATAAAA
27071204 TTGGGGTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 8 0.28
21 4 0.14
22 17 0.59
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAATAAAAATAAATAAAA
Found at i:27071567 original size:199 final size:199
Alignment explanation
Indices: 27071218--27071586 Score: 596
Period size: 199 Copynumber: 1.9 Consensus size: 199
27071208 GGTGATTAAC
* * * * *
27071218 CCAATTTTCACATGGCCATGGACATGCCCGTGTGTCTAGGCCGTGTGGGTCACATGGCCATGTCG
1 CCAAGTTTCACACGGCCATGGACACGCCCATGTGTCCAGGCCGTGTGGGTCACATGGCCATGTCG
* * *
27071283 CCAAGCCGTGTGTGTTTTCCTTCGCTTCTCCCACGCCCATGTGAGATCCCACACGCCTGTGTGGC
66 CCAAGCCGTGTGTGTTTTCCTTCACTTCTCCCACGCCCATGTGAGATCCCACACACCGGTGTGGC
* *
27071348 CAGGCCGTGTGCTTCACACACCCGTATGGTCAGGCCATGTAACTCTGTGACTGAGAAAAAAAATT
131 CAGGCCGTGTGCTCCACACACCCGTATGGCCAGGCCATGTAACTCTGTGACTGAGAAAAAAAATT
27071413 AGCT
196 AGCT
27071417 CCAAGTTTCACACGGCC-TAGGACACGCCCATGTGTCCAGGCCGTGTGGGTCACATGGCCATGTC
1 CCAAGTTTCACACGGCCAT-GGACACGCCCATGTGTCCAGGCCGTGTGGGTCACATGGCCATGTC
* *
27071481 GCCAGGCCTTGTGTGTTTTCCTTCACTTCTCCCACGCCCATGTGAGATCCCACACACCGGTGTGG
65 GCCAAGCCGTGTGTGTTTTCCTTCACTTCTCCCACGCCCATGTGAGATCCCACACACCGGTGTGG
* *
27071546 CCAGGTCGTGTGCTCCACACACCCGTTTGGCCAGGCCATGT
130 CCAGGCCGTGTGCTCCACACACCCGTATGGCCAGGCCATGT
27071587 GGGTCAAAAA
Statistics
Matches: 155, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
198 1 0.01
199 154 0.99
ACGTcount: A:0.18, C:0.32, G:0.25, T:0.25
Consensus pattern (199 bp):
CCAAGTTTCACACGGCCATGGACACGCCCATGTGTCCAGGCCGTGTGGGTCACATGGCCATGTCG
CCAAGCCGTGTGTGTTTTCCTTCACTTCTCCCACGCCCATGTGAGATCCCACACACCGGTGTGGC
CAGGCCGTGTGCTCCACACACCCGTATGGCCAGGCCATGTAACTCTGTGACTGAGAAAAAAAATT
AGCT
Found at i:27074493 original size:23 final size:22
Alignment explanation
Indices: 27074462--27074507 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
27074452 AAAAATTTAG
*
27074462 TAAATTAAAAGTAAAACAAAAAA
1 TAAAATAAAA-TAAAACAAAAAA
*
27074485 TAAAATAAAATAAAATAAAAAA
1 TAAAATAAAATAAAACAAAAAA
27074507 T
1 T
27074508 GGCTAAAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (22 bp):
TAAAATAAAATAAAACAAAAAA
Found at i:27080985 original size:28 final size:29
Alignment explanation
Indices: 27080954--27081014 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
27080944 GTGAGCATGA
* *
27080954 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGACCTAACAGGCC
*
27080982 ATATAAAGGTGATTTGGACCTAATAGGCC
1 ATATAAAGGTGATTTGGACCTAACAGGCC
27081011 ATAT
1 ATAT
27081015 GAATATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGACCTAACAGGCC
Done.