Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 95 of 310
Found at i:30411937 original size:22 final size:21
Alignment explanation
Indices: 30411902--30411942 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
30411892 ACTTCTAGCA
30411902 TTATTTTTAATTAATATTTTTT
1 TTATTTTTAATTAAT-TTTTTT
**
30411924 TTATTTTTTCTTAATTTTT
1 TTATTTTTAATTAATTTTT
30411943 AAGGGTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTATTTTTAATTAATTTTTTT
Found at i:30412759 original size:17 final size:17
Alignment explanation
Indices: 30412737--30412785 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
30412727 TTTATTTGTG
30412737 TTTTATTTTATAAATTA
1 TTTTATTTTATAAATTA
*
30412754 TTTTA-TTTATGAATTA
1 TTTTATTTTATAAATTA
*
30412770 TTTTCATTTTAAAAAT
1 TTTT-ATTTTATAAAT
30412786 ATGTTTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.52
17 6 0.22
18 7 0.26
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTTATTTTATAAATTA
Found at i:30419352 original size:3 final size:3
Alignment explanation
Indices: 30419340--30419370 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
30419330 CTCAGTGGGA
30419340 TCT T-T TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
30419371 AGGATCCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:30429030 original size:22 final size:19
Alignment explanation
Indices: 30428991--30429032 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
30428981 TGGAAAGTTG
30428991 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
30429010 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
30429032 A
1 A
30429033 ATGATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:30429150 original size:30 final size:30
Alignment explanation
Indices: 30429095--30429151 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
30429085 CTTTTGAAAA
* *
30429095 TATTTACAAAAAGAGACATCTAATTTTTAG
1 TATTTACAAAAAGAGACACCAAATTTTTAG
30429125 TATTTACAAAAAGAG-CAACCAAATTTT
1 TATTTACAAAAAGAGAC-ACCAAATTTT
30429152 GAAAATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (30 bp):
TATTTACAAAAAGAGACACCAAATTTTTAG
Found at i:30433446 original size:67 final size:67
Alignment explanation
Indices: 30433338--30433471 Score: 232
Period size: 67 Copynumber: 2.0 Consensus size: 67
30433328 AGTTTAGAGC
* *
30433338 ATCTACTTCATGTATTCCAGTGACTCCTCTTCCTTCCACTGCTTGATTGGTTGGCCATTGATAAT
1 ATCTACTTCATGTATTCCAGCGACTCCTCTTCCTGCCACTGCTTGATTGGTTGGCCATTGATAAT
30433403 TG
66 TG
* *
30433405 ATCTACTTCATGTATTCTAGCGACTCCTCTTCCTGGCACTGCTTGATTGGTTGGCCATTGATAAT
1 ATCTACTTCATGTATTCCAGCGACTCCTCTTCCTGCCACTGCTTGATTGGTTGGCCATTGATAAT
30433470 TG
66 TG
30433472 TTGCTGGCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.40
Consensus pattern (67 bp):
ATCTACTTCATGTATTCCAGCGACTCCTCTTCCTGCCACTGCTTGATTGGTTGGCCATTGATAAT
TG
Found at i:30438398 original size:34 final size:33
Alignment explanation
Indices: 30438358--30438431 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 33
30438348 TCTAATTTTA
30438358 TTTTTTACATAATTAAATATTTCTTATTTTGAAT
1 TTTTTTACATAATTAAATATTT-TTATTTTGAAT
** *
30438392 TTTTTTAGTTAATTAAATATTTTTATTTTTAAT
1 TTTTTTACATAATTAAATATTTTTATTTTGAAT
*
30438425 ATTTTTA
1 TTTTTTA
30438432 TTTACCTTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 16 0.44
34 20 0.56
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (33 bp):
TTTTTTACATAATTAAATATTTTTATTTTGAAT
Found at i:30438427 original size:15 final size:15
Alignment explanation
Indices: 30438370--30438434 Score: 67
Period size: 15 Copynumber: 4.1 Consensus size: 15
30438360 TTTTACATAA
30438370 TTAAATATTTCTTATT
1 TTAAATATTT-TTATT
* *
30438386 TTGAATTTTTTTAGTT
1 TTAAATATTTTTA-TT
30438402 AATTAAATATTTTTATT
1 --TTAAATATTTTTATT
*
30438419 TTTAATATTTTTATT
1 TTAAATATTTTTATT
30438434 T
1 T
30438435 ACCTTGTCGA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
15 18 0.44
16 10 0.24
17 2 0.05
18 11 0.27
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (15 bp):
TTAAATATTTTTATT
Found at i:30439091 original size:12 final size:12
Alignment explanation
Indices: 30439074--30439117 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
30439064 CCAATTAACA
30439074 TAGAAGTAGATG
1 TAGAAGTAGATG
30439086 TAGAAGTAGATG
1 TAGAAGTAGATG
*
30439098 TAGTAGTAGATG
1 TAGAAGTAGATG
30439110 TAGAAGTA
1 TAGAAGTA
30439118 AAATTAGAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.27
Consensus pattern (12 bp):
TAGAAGTAGATG
Found at i:30462992 original size:7 final size:6
Alignment explanation
Indices: 30462950--30463023 Score: 103
Period size: 6 Copynumber: 11.8 Consensus size: 6
30462940 GGTTTTCTCT
* *
30462950 AAAATG AAAATG AAAATG AAAACG AAAACG AAAATG AAAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG -AAAATG AAAATG
30462999 AAAATG AAAAATG AAAAATG AAAAT
1 AAAATG -AAAATG -AAAATG AAAAT
30463024 AACCTTAAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
6 45 0.70
7 19 0.30
ACGTcount: A:0.69, C:0.03, G:0.15, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:30462995 original size:19 final size:19
Alignment explanation
Indices: 30462950--30463023 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
30462940 GGTTTTCTCT
30462950 AAAATGAAAATGAAAATG-
1 AAAATGAAAATGAAAATGA
* *
30462968 AAAACGAAAACGAAAATGA
1 AAAATGAAAATGAAAATGA
30462987 AAAATGAAAATGAAAATGA
1 AAAATGAAAATGAAAATGA
30463006 AAAATGAAAAATGAAAAT
1 AAAATG-AAAATGAAAAT
30463024 AACCTTAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
18 16 0.32
19 23 0.46
20 11 0.22
ACGTcount: A:0.69, C:0.03, G:0.15, T:0.14
Consensus pattern (19 bp):
AAAATGAAAATGAAAATGA
Found at i:30483322 original size:50 final size:47
Alignment explanation
Indices: 30483202--30483473 Score: 170
Period size: 47 Copynumber: 5.8 Consensus size: 47
30483192 TATAATGCCA
* *
30483202 ATGCCATGTACCAGACATGGTCTTACACTGGATCTCACGTTAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGATCTCACATTAAGTCG
* * **
30483249 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCACATATTTGTTGCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGATCTCACAT-TAAG-T-CG
* * *
30483299 ATGCCATGTCCCAGACATGGTCTTATAC-AGA-CACATCATGT-AG-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGATCTCA-CAT-TAAGTC-G
* * * *
30483345 ATG-CATGTCCCAAACAT-GTCTTACACTGG--CTTACATCAAGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGATCTCACAT-TA-A-GTCG
* * * * * * * *
30483391 ATG-AATATCCCAGACAT-GTCTTATACTAGCTCTCGTC-TCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGATCTC-ACATTAA-GTCG
*
30483437 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGATCTCA
30483474 TAATGTGGCC
Statistics
Matches: 176, Mismatches: 34, Indels: 30
0.73 0.14 0.12
Matches are distributed among these distances:
43 3 0.02
44 10 0.06
45 16 0.09
46 38 0.22
47 50 0.28
48 24 0.14
49 7 0.04
50 28 0.16
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGATCTCACATTAAGTCG
Found at i:30483402 original size:46 final size:46
Alignment explanation
Indices: 30483344--30483511 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
30483334 TCATGTAGCT
30483344 GATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCAAGAGGCC
1 GATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATCAAGAGGCC
* * * * * * * *
30483390 GATGAATATCCCAGACATGTCTTATACTAGCTCTCGTCTCA-ATGCC
1 GATGCATGTCCCAAACATGTCTTACACTGGCTCTCATC-AAGAGGCC
* *
30483436 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATCAA-GAGGCC
*
30483484 GATGCATGTCCTAAACATGTCTTACACT
1 GATGCATGTCCCAAACATGTCTTACACT
30483512 AGTACACAAA
Statistics
Matches: 98, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
46 49 0.50
47 26 0.27
48 23 0.23
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCAAGAGGCC
Found at i:30483460 original size:94 final size:92
Alignment explanation
Indices: 30483344--30483513 Score: 227
Period size: 94 Copynumber: 1.8 Consensus size: 92
30483334 TCATGTAGCT
*
30483344 GATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCAA-GAGGCCGATGAATATCCCAGACA
1 GATGCATGTCCCAAACATGTCTTACACTGGCTCT-CAT-AATGAGGCCGATGAATATCCCAAACA
*
30483407 TGTCTTATACTAGCTCTCGTCTCAATGCC
64 TGTCTTACACTAGCTCTCGTCTCAATGCC
* * * * *
30483436 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCTAAACA
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGAATATCCCAAACA
30483501 TGTCTTACACTAG
64 TGTCTTACACTAG
30483514 TACACAAACA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
92 4 0.06
93 15 0.22
94 47 0.70
95 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCGATGAATATCCCAAACATG
TCTTACACTAGCTCTCGTCTCAATGCC
Found at i:30500773 original size:18 final size:18
Alignment explanation
Indices: 30500750--30500786 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
30500740 TTGATAATTA
30500750 ATTTCTTAATTACTTTCT
1 ATTTCTTAATTACTTTCT
30500768 ATTTCTTAATTACTTTCT
1 ATTTCTTAATTACTTTCT
30500786 A
1 A
30500787 AGTTACGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTCTTAATTACTTTCT
Found at i:30506579 original size:46 final size:46
Alignment explanation
Indices: 30506435--30506651 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 46
30506425 ATTGTTGGCT
* * *
30506435 AGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGTCT-AGAGCC
* * * * * *
30506481 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGTCTAGAGCC
* *
30506529 AGTGTAAGAAATGTTTAGGACATGCATCGGCCTCGAGTCGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGTC-TAGAGCC
* * * * *
30506575 AGTGTAAGATATGTCTGGGACATGCATCGG-CTACGAGAT-GATAGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCT-CGAG-TCTAGAGCC
30506621 AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCG
30506652 ACTTGAGATA
Statistics
Matches: 138, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.02
46 68 0.49
47 38 0.28
48 28 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGTCTAGAGCC
Found at i:30506650 original size:94 final size:94
Alignment explanation
Indices: 30506432--30506698 Score: 255
Period size: 94 Copynumber: 2.9 Consensus size: 94
30506422 GTTATTGTTG
*
30506432 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTC
*
30506497 TGGGACATGGCATCGGCATTGAGACAAGA
66 TGGGACATGGCATCGGCATCGAGACAAGA
* * * * *
30506526 GCTAGTGTAAGAAATGTTTAGGACATGCATCGGCCTCGAGTCGT-A-AGCCAGTGTAAGA-TATG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-A-TCATGAGAGCCAGTGTAAGACCATG
** *
30506588 TCTGGGACAT-GCATCGGC-TACGAGATGATA
64 TCTGGGACATGGCATCGGCAT-CGAGACAAGA
* * * * *
30506618 G-TCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGAT-ATGA-A-TCGGTGTAAGACC
1 GCT-AGTGTAAGA-CATGTCTAGGACAT-GCATCGGC--CACATCATGAGAGCCAGTGTAAGACC
*
30506679 ATGTCTGGGACATAGCATCG
61 ATGTCTGGGACATGGCATCG
30506699 CCACCTTACC
Statistics
Matches: 142, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
91 2 0.01
92 24 0.17
93 35 0.25
94 70 0.49
95 9 0.06
96 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATCGAGACAAGA
Found at i:30506660 original size:47 final size:45
Alignment explanation
Indices: 30506435--30506698 Score: 194
Period size: 47 Copynumber: 5.6 Consensus size: 45
30506425 ATTGTTGGCT
* * *
30506435 AGTGTAAGACATGTCTAGGACATGCATCGGC-CACATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTC-GA-GATGATAGCC
* * ** * *
30506481 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-TCGAGATGATAGCC
* *
30506529 AGTGTAAGAAATGTTTAGGACATGCATCGGCCTCGAG-TCG-TAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CTCGAGAT-GAT-AGCC
* * *
30506575 AGTGTAAGATATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCT-CGAGATGATAGCC
* * **
30506621 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGAT-ATGAATC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTCGAGATGAT-AGCC
* *
30506668 GGTGTAAGACCATGTCTGGGACATAGCATCG
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCG
30506699 CCACCTTACC
Statistics
Matches: 178, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 69 0.39
47 75 0.42
48 31 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCTCGAGATGATAGCC
Found at i:30511852 original size:23 final size:23
Alignment explanation
Indices: 30511826--30511869 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
30511816 CGTAAAAATA
* *
30511826 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
30511849 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
30511870 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:30513382 original size:48 final size:48
Alignment explanation
Indices: 30513318--30513465 Score: 233
Period size: 48 Copynumber: 3.1 Consensus size: 48
30513308 TTGATGTACA
* *
30513318 AGATATATATATGTGGTAAAGCCGATTGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
30513366 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
30513414 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
30513462 AGAT
1 AGAT
30513466 GTGTATATAT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:30519035 original size:21 final size:21
Alignment explanation
Indices: 30519011--30519052 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
30519001 TCATCAGATC
*
30519011 TACACTTTGA-GACATCGGGGG
1 TACACGTTGAGGA-ATCGGGGG
*
30519032 TACAGGTTGAGGAATCGGGGG
1 TACACGTTGAGGAATCGGGGG
30519053 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.24, C:0.14, G:0.40, T:0.21
Consensus pattern (21 bp):
TACACGTTGAGGAATCGGGGG
Found at i:30521268 original size:29 final size:30
Alignment explanation
Indices: 30521235--30521293 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
30521225 CTTTAATACG
*
30521235 AACTTTGGCAAAATTACA-TTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
30521264 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
30521294 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:30523500 original size:24 final size:24
Alignment explanation
Indices: 30523473--30523520 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
30523463 CTTCGCAGAT
30523473 GTAGGGAAATAGAACTGCGTAAAC
1 GTAGGGAAATAGAACTGCGTAAAC
*
30523497 GTAGGGAAATCGAACTGCGTAAAC
1 GTAGGGAAATAGAACTGCGTAAAC
30523521 AACTTTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.17
Consensus pattern (24 bp):
GTAGGGAAATAGAACTGCGTAAAC
Found at i:30525183 original size:21 final size:20
Alignment explanation
Indices: 30525157--30525196 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
30525147 GTATTTTAAA
30525157 TTAATTAATTTTAAAAATATT
1 TTAATTAA-TTTAAAAATATT
* *
30525178 TTAATTTATTTAAATATAT
1 TTAATTAATTTAAAAATAT
30525197 AAATACTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAATTAATTTAAAAATATT
Found at i:30525200 original size:26 final size:26
Alignment explanation
Indices: 30525148--30525201 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
30525138 TTTTTGCTAG
* *
30525148 TATTTTAAATTAATTAATTTTAAAAA
1 TATTTTAAATTAATTAAATATAAAAA
* * *
30525174 TATTTTAATTTATTTAAATATATAAA
1 TATTTTAAATTAATTAAATATAAAAA
30525200 TA
1 TA
30525202 CTAATATAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
TATTTTAAATTAATTAAATATAAAAA
Found at i:30526674 original size:25 final size:23
Alignment explanation
Indices: 30526634--30526690 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 23
30526624 AAGTATACAT
30526634 ATTTTTTA-AAAAATTTATTTTCA
1 ATTTTTTAGAAAAATTTATTTT-A
*
30526657 ATTTTTTAGGAAACATTTATTTTA
1 ATTTTTTA-GAAAAATTTATTTTA
30526681 ATGTTTTTAG
1 AT-TTTTTAG
30526691 TATTTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 8 0.27
24 4 0.13
25 18 0.60
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (23 bp):
ATTTTTTAGAAAAATTTATTTTA
Found at i:30528967 original size:17 final size:17
Alignment explanation
Indices: 30528924--30528960 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
30528914 TTCGTCTTTC
30528924 CTCCTCCTTCCGTCCTT
1 CTCCTCCTTCCGTCCTT
30528941 CTCCTCCTTCCGTCCTT
1 CTCCTCCTTCCGTCCTT
30528958 CTC
1 CTC
30528961 TTTCTTCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.00, C:0.54, G:0.05, T:0.41
Consensus pattern (17 bp):
CTCCTCCTTCCGTCCTT
Found at i:30533363 original size:102 final size:101
Alignment explanation
Indices: 30533158--30533366 Score: 391
Period size: 102 Copynumber: 2.0 Consensus size: 101
30533148 CTCGAGGATA
30533158 CAATGAAGCCAATGACTATTTGCGTTTTGCACTGACGAGAATAGTCCACTATACACTAGTAATGT
1 CAAT-AAGCCAATGACTATTTGCGTTTTGCACTGACGAGAATAGTCCACTATACACTAGTAATGT
30533223 ATAACAAAAACTCAATTTCTACAAAGGATTTCTGCAG
65 ATAACAAAAACTCAATTTCTACAAAGGATTTCTGCAG
*
30533260 CAATAAGCCAATGACTATTTGCGTTTTGCACTGACGAGAATAGTCCACTATGCACTGAGTAATGT
1 CAATAAGCCAATGACTATTTGCGTTTTGCACTGACGAGAATAGTCCACTATACACT-AGTAATGT
30533325 ATAACAAAAACTCAATTTCTACAAAGGATTTCTGCAG
65 ATAACAAAAACTCAATTTCTACAAAGGATTTCTGCAG
30533362 CAATA
1 CAATA
30533367 CTTTATAGAA
Statistics
Matches: 105, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
101 51 0.49
102 54 0.51
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (101 bp):
CAATAAGCCAATGACTATTTGCGTTTTGCACTGACGAGAATAGTCCACTATACACTAGTAATGTA
TAACAAAAACTCAATTTCTACAAAGGATTTCTGCAG
Found at i:30533795 original size:196 final size:194
Alignment explanation
Indices: 30533456--30533845 Score: 737
Period size: 196 Copynumber: 2.0 Consensus size: 194
30533446 ATGAAATCCA
30533456 TTCCTATTTATAGGAATTTTCATGTCTCTTCATAGAGACATCTTTCAATAGGTGTCTTTATGAAT
1 TTCCTATTTATAGGAATTTTCATGTCTCTTCATAGAGACATCTTTCAATAGGTGTCTTTATGAAT
*
30533521 AAATAAATAAATAATAATTATTCATTTAGTTTTGTAACTATTCAAATAATATTTTTTGAATAGTT
66 AAATAAATAAATAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTT
30533586 ATAATTCTTTTTTTTTAAAAATCAAATGATATAACTTTTGACCAATGACCAAAAGTTTTATCTTT
131 ATAATTCTTTTTTTTT--AAATCAAATGATATAACTTTTGACCAATGACCAAAAGTTTTATCTTT
30533651 T
194 T
30533652 TTCCTATTTATAGGAATTTTCATGTCTCTTCATAGAGACATCTTTCAATAGGTGTCTTTATGAAT
1 TTCCTATTTATAGGAATTTTCATGTCTCTTCATAGAGACATCTTTCAATAGGTGTCTTTATGAAT
30533717 AAATAAAT-AATAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTT
66 AAATAAATAAATAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTT
30533781 ATAATTCTTTTTTTTTTAAATCAAATGATATAACTTTTGACCAATGACCAAAAGTTTTATCTTTT
131 ATAATTC-TTTTTTTTTAAATCAAATGATATAACTTTTGACCAATGACCAAAAGTTTTATCTTTT
30533846 GATTAATTAC
Statistics
Matches: 192, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
194 48 0.25
195 62 0.32
196 82 0.43
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (194 bp):
TTCCTATTTATAGGAATTTTCATGTCTCTTCATAGAGACATCTTTCAATAGGTGTCTTTATGAAT
AAATAAATAAATAATAATTATTCATTTAATTTTGTAACTATTCAAATAATATTTTTTGAATAGTT
ATAATTCTTTTTTTTTAAATCAAATGATATAACTTTTGACCAATGACCAAAAGTTTTATCTTTT
Found at i:30536232 original size:27 final size:27
Alignment explanation
Indices: 30536202--30536379 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
30536192 ATATCGAGTC
* *
30536202 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
30536229 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
30536256 TGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
30536284 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
30536311 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
30536338 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
30536365 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
30536380 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:30536343 original size:82 final size:81
Alignment explanation
Indices: 30536223--30536378 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
30536213 TGCTATATAA
*
30536223 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAA-TCGCA
30536288 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * * *
30536305 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCGAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATT-GCACACTTAGTGCAACATAGTCAAATCGC
*
30536368 ACCCTTAGTGC
64 ACACTTAGTGC
30536379 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:30538605 original size:22 final size:22
Alignment explanation
Indices: 30538557--30538611 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
30538547 TTTAATATAA
** *
30538557 TAAAATATTTTTTTTTACAATT
1 TAAAATATTTAATTTTAAAATT
30538579 T-AAATATTTAATTTTAAAATT
1 TAAAATATTTAATTTTAAAATT
*
30538600 TAAAATAATTAA
1 TAAAATATTTAA
30538612 GATAAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TAAAATATTTAATTTTAAAATT
Found at i:30540522 original size:59 final size:60
Alignment explanation
Indices: 30540449--30540588 Score: 167
Period size: 59 Copynumber: 2.3 Consensus size: 60
30540439 AAATTTTAGT
* * *
30540449 TTGTTGGATTTTGAAATTATTATGTCTT-AGATTTGTTAGATATTG-ATTATGTTTTAAGC
1 TTGTTGGATATTGAAATTATTATGTCTTAAG-CTTGTTAGATATTGTATTATGTTTTAAAC
* * *
30540508 TTGTTAGATATTGAATTTATTATGTTTTAAGCTTGTTAGATATTGAATTTATTATGTTTTAAAC
1 TTGTTGGATATTGAAATTATTATGTCTTAAGCTTGTTAGATATTG----TATTATGTTTTAAAC
30540572 TTGTTGGATATTGAAAT
1 TTGTTGGATATTGAAAT
30540589 GATTGACAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
59 37 0.55
60 2 0.03
64 28 0.42
ACGTcount: A:0.28, C:0.03, G:0.17, T:0.52
Consensus pattern (60 bp):
TTGTTGGATATTGAAATTATTATGTCTTAAGCTTGTTAGATATTGTATTATGTTTTAAAC
Found at i:30540531 original size:32 final size:32
Alignment explanation
Indices: 30540494--30540586 Score: 168
Period size: 32 Copynumber: 2.9 Consensus size: 32
30540484 TTAGATATTG
30540494 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
30540526 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
* *
30540558 ATTATGTTTTAAACTTGTTGGATATTGAA
1 ATTATGTTTTAAGCTTGTTAGATATTGAA
30540587 ATGATTGACA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.29, C:0.03, G:0.16, T:0.52
Consensus pattern (32 bp):
ATTATGTTTTAAGCTTGTTAGATATTGAATTT
Found at i:30541833 original size:20 final size:20
Alignment explanation
Indices: 30541808--30541847 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
30541798 ACAATTTAAA
30541808 ATATAAATTTATTAATATAT
1 ATATAAATTTATTAATATAT
*
30541828 ATATAAGTTTATTAATATAT
1 ATATAAATTTATTAATATAT
30541848 GTAAAAACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATAT
Found at i:30541951 original size:19 final size:20
Alignment explanation
Indices: 30541927--30541973 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
30541917 CATTCAAATA
30541927 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
30541946 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
30541966 CCAGAAAA
1 CCAGAAAA
30541974 CATTTTACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:30542381 original size:18 final size:18
Alignment explanation
Indices: 30542358--30542394 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
30542348 TTAAAAAGGG
30542358 TATCCGATTACTAATGCA
1 TATCCGATTACTAATGCA
30542376 TATCCGATTACTAATGCA
1 TATCCGATTACTAATGCA
30542394 T
1 T
30542395 CAATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (18 bp):
TATCCGATTACTAATGCA
Found at i:30543685 original size:20 final size:21
Alignment explanation
Indices: 30543637--30543690 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
30543627 TATCTAATTA
30543637 TAAATATTTAATAGTTATATT
1 TAAATATTTAATAGTTATATT
30543658 TAAATATTTAA-AG-TATAGTT
1 TAAATATTTAATAGTTATA-TT
*
30543678 TATATATTCTAAT
1 TAAATATT-TAAT
30543691 TAAATTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.14
20 11 0.38
21 14 0.48
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.50
Consensus pattern (21 bp):
TAAATATTTAATAGTTATATT
Found at i:30553876 original size:15 final size:16
Alignment explanation
Indices: 30553856--30553885 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30553846 CCTGCCATTT
30553856 TTTTTC-TTTTCTTCC
1 TTTTTCTTTTTCTTCC
30553871 TTTTTCTTTTTCTTC
1 TTTTTCTTTTTCTTC
30553886 TTGTTTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTCTTTTTCTTCC
Found at i:30561413 original size:43 final size:46
Alignment explanation
Indices: 30561353--30561486 Score: 157
Period size: 43 Copynumber: 2.9 Consensus size: 46
30561343 GAGATATGTG
*
30561353 GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGC-A-A-
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATAT
* * *
30561396 GCATCCGAGCTCATTGAGAGGTTCGAGTTCATAATGGATGCGATTCAT
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA-T-AT
*
30561444 GTAACATCGGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
1 G---CATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
30561487 TGTTACATGT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
43 37 0.49
44 1 0.01
47 1 0.01
48 1 0.01
51 35 0.47
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGATAT
Found at i:30562938 original size:23 final size:23
Alignment explanation
Indices: 30562910--30562969 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
30562900 TGTCCCAATG
30562910 CACACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
30562933 CACACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
*
30562956 CACATGGGCGTGTG
1 CACACGGGCGTGTG
30562970 AGGTTTAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.13, C:0.32, G:0.33, T:0.22
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGCCTC
Found at i:30566431 original size:387 final size:385
Alignment explanation
Indices: 30565718--30566495 Score: 1414
Period size: 387 Copynumber: 2.0 Consensus size: 385
30565708 TTGTATGTAA
*
30565718 CTTAGGAAACATGCAGTTGACACTTACATAACTTATAAGGGAGCTCTAATCCTATGAGTTGATTC
1 CTTAGGAAACATGCAGTTGACACTTACATAACTTATAAGGGAGCTCTAATCCTATAAGTTGATTC
30565783 GAAAAACAGAAGCTAACTTAGCAGTTGTCTCTTCTTAAAAGGGAAAGGAAAAAATTTAATAAGAT
66 GAAAAACAGAAGCTAACTTAGCAGTTGTCTCTTCTTAAAAGGGAAAGGAAAAAATTTAATAAGAT
* *
30565848 AAAGACTAAGCCTTTGAGTCCTTCAAAAGTACATGAGAAGAAGACTAGGAAGCGTAAATATTTAA
131 AAAGACTAAGCCTTTGAGTCCTCCAAAAGTACATGAGAAGAAGACTAGGAAGCGTAAAGATTTAA
*
30565913 TAAAGTCTAAGTGTTTCTTTTACAACAAGAAAAGGGCACTTTAAGGTAAATTGCAAAGAGTTGAA
196 TAAAGTCTAAGTGTTTCTTTTACAACAAGAAAAGGGCACTTTAAGGTAAACTGCAAAGAGTTGAA
30565978 TGGTGTATGAAACTCTTAGTTTTTGAAACTTGTTTAGTGGAAGATTTAGTAGACTATTGGGTCAT
261 TGGTGTATGAAACTCTTAGTTTTTGAAACTTGTTTAGTGGAAGATTTAGTAGACTATTGGGTCAT
*
30566043 TGATTTTGGGGTCATTAATCAAGTATGTGTGTCTTTGTAAGGGTTCAAGAAAACGAAAGAT
326 TGATTCTGGGGTCATTAATCAAGTATGTGTGTCTTTGTAAGGGTTCAAGAAAA-GAAAGAT
30566104 CTTAGGAAACATGCAGTTGACACTTACATAACTTATAAGGGAGCTCTAATCCTATAAGTTGATTC
1 CTTAGGAAACATGCAGTTGACACTTACATAACTTATAAGGGAGCTCTAATCCTATAAGTTGATTC
*
30566169 GAAAAACAGAAGCTACCTTAGCAGTTGTCTCTTCTTAAAAGGGAAAGGAAAACAATTTAATAAGA
66 GAAAAACAGAAGCTAACTTAGCAGTTGTCTCTTCTTAAAAGGGAAAGGAAAA-AATTTAATAAGA
*
30566234 TAAAGACTAAGCCTTTGAGTCCTCCAAAAGTACATGGGAAGAAGACTAGGAAGCGTAAAGATTT-
130 TAAAGACTAAGCCTTTGAGTCCTCCAAAAGTACATGAGAAGAAGACTAGGAAGCGTAAAGATTTA
* *
30566298 ATCAAAGTCTAAGTGTTTCTTTTACAACAAGAAAATGGCACTTTAAGGTAAACTGCAAATAGTTG
195 AT-AAAGTCTAAGTGTTTCTTTTACAACAAGAAAAGGGCACTTTAAGGTAAACTGCAAAGAGTTG
*
30566363 AATGGTGTATGAAACTCTTAGTTTTTGAAACTTGTTTAGTGGAAGGTTTAGTAGACTATTGGGTC
259 AATGGTGTATGAAACTCTTAGTTTTTGAAACTTGTTTAGTGGAAGATTTAGTAGACTATTGGGTC
* *
30566428 ATTGATTCTGGGGTCATTAATCAAGTATGTGTGTTTTTGTAGGGGTTCAAGAAAAGAAAGAT
324 ATTGATTCTGGGGTCATTAATCAAGTATGTGTGTCTTTGTAAGGGTTCAAGAAAAGAAAGAT
30566490 CTTAGG
1 CTTAGG
30566496 GATAAGAATA
Statistics
Matches: 378, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
386 130 0.34
387 248 0.66
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (385 bp):
CTTAGGAAACATGCAGTTGACACTTACATAACTTATAAGGGAGCTCTAATCCTATAAGTTGATTC
GAAAAACAGAAGCTAACTTAGCAGTTGTCTCTTCTTAAAAGGGAAAGGAAAAAATTTAATAAGAT
AAAGACTAAGCCTTTGAGTCCTCCAAAAGTACATGAGAAGAAGACTAGGAAGCGTAAAGATTTAA
TAAAGTCTAAGTGTTTCTTTTACAACAAGAAAAGGGCACTTTAAGGTAAACTGCAAAGAGTTGAA
TGGTGTATGAAACTCTTAGTTTTTGAAACTTGTTTAGTGGAAGATTTAGTAGACTATTGGGTCAT
TGATTCTGGGGTCATTAATCAAGTATGTGTGTCTTTGTAAGGGTTCAAGAAAAGAAAGAT
Found at i:30569151 original size:93 final size:93
Alignment explanation
Indices: 30569039--30569210 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
30569029 CGCCCATAAG
***
30569039 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
30569104 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
30569132 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
30569197 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
30569211 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:30569207 original size:46 final size:46
Alignment explanation
Indices: 30569032--30569207 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
30569022 TGTAACCCGC
* ***
30569032 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
30569078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
30569128 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
30569171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
30569208 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:30569664 original size:31 final size:30
Alignment explanation
Indices: 30569623--30569686 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
30569613 TAATCCTTAA
30569623 CTAAAATTTTGGCAAAATTACAATTTTACCC
1 CTAAAATTTT-GCAAAATTACAATTTTACCC
* * * * *
30569654 CTAAACTTTTGCATATTTACATTTTTTCCC
1 CTAAAATTTTGCAAAATTACAATTTTACCC
30569684 CTA
1 CTA
30569687 GGCTCGGGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (30 bp):
CTAAAATTTTGCAAAATTACAATTTTACCC
Found at i:30582138 original size:2 final size:2
Alignment explanation
Indices: 30582131--30582157 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
30582121 AGTTATTTTA
30582131 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
30582158 AACATATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30586508 original size:17 final size:16
Alignment explanation
Indices: 30586488--30586519 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
30586478 CTGTTTTCAT
30586488 TTTCTTTTACTTTTATG
1 TTTCTTTT-CTTTTATG
30586505 TTTCTTTTCTTTTAT
1 TTTCTTTTCTTTTAT
30586520 TCTTTAGATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.09, C:0.12, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTCTTTTCTTTTATG
Found at i:30587575 original size:16 final size:16
Alignment explanation
Indices: 30587554--30587584 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
30587544 GTAACCATTA
30587554 GTATGGATGTGAGGTT
1 GTATGGATGTGAGGTT
30587570 GTATGGATGTGAGGT
1 GTATGGATGTGAGGT
30587585 CGGTGGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.35
Consensus pattern (16 bp):
GTATGGATGTGAGGTT
Found at i:30588400 original size:6 final size:6
Alignment explanation
Indices: 30588391--30588416 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
30588381 CACTCACAGA
30588391 AGCATC AGCATC AGCATC AGCATC AG
1 AGCATC AGCATC AGCATC AGCATC AG
30588417 TTTGCACCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.31, G:0.19, T:0.15
Consensus pattern (6 bp):
AGCATC
Found at i:30591487 original size:14 final size:15
Alignment explanation
Indices: 30591468--30591501 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
30591458 ACTTTTCTAA
*
30591468 TCATCCCTCA-TCCT
1 TCATCCCTCACTCAT
30591482 TCATCCCTCACTCAT
1 TCATCCCTCACTCAT
30591497 TCATC
1 TCATC
30591502 ATTCTCTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.18, C:0.47, G:0.00, T:0.35
Consensus pattern (15 bp):
TCATCCCTCACTCAT
Found at i:30606415 original size:18 final size:18
Alignment explanation
Indices: 30606374--30606418 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
30606364 CCTTTTTGCA
*
30606374 AAAAATGTAAAATGTGGT
1 AAAAATGTGAAATGTGGT
*
30606392 AGAAATGTGAAATGATGG-
1 AAAAATGTGAAATG-TGGT
30606410 AAAAATGTG
1 AAAAATGTG
30606419 GGCTGCTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAAAATGTGAAATGTGGT
Found at i:30617912 original size:19 final size:18
Alignment explanation
Indices: 30617886--30617923 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
30617876 ATTTAAGTAA
30617886 ATATATTATATTAATATT
1 ATATATTATATTAATATT
*
30617904 ATATGATTATATTATTATT
1 ATAT-ATTATATTAATATT
30617923 A
1 A
30617924 GAATTAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
ATATATTATATTAATATT
Found at i:30618011 original size:21 final size:23
Alignment explanation
Indices: 30617976--30618021 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
30617966 AACGAAAAAC
*
30617976 AAGGGAGAAGGAAAGAAA-GAAA
1 AAGGGAGAAGAAAAGAAAGGAAA
30617998 AAGGGA-AAGAAAAGAAAGGAAA
1 AAGGGAGAAGAAAAGAAAGGAAA
30618020 AA
1 AA
30618022 TAGGGTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (23 bp):
AAGGGAGAAGAAAAGAAAGGAAA
Found at i:30625351 original size:19 final size:18
Alignment explanation
Indices: 30625325--30625362 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
30625315 ATTTAAGTAA
30625325 ATATATTATATTAATATT
1 ATATATTATATTAATATT
*
30625343 ATATGATTATATTATTATT
1 ATAT-ATTATATTAATATT
30625362 A
1 A
30625363 GAATTAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
ATATATTATATTAATATT
Found at i:30625632 original size:57 final size:57
Alignment explanation
Indices: 30625544--30625651 Score: 189
Period size: 57 Copynumber: 1.9 Consensus size: 57
30625534 GTAACAGCCT
30625544 GATTTTTCACCCTAGTCAGAACGGTGGTTTCGGGACCACGAATCCGAGTCAAAGCTC
1 GATTTTTCACCCTAGTCAGAACGGTGGTTTCGGGACCACGAATCCGAGTCAAAGCTC
** *
30625601 GATTTTTCACCCTAGTTGGAACGGTGGTTTCGGGACCACGAATCTGAGTCA
1 GATTTTTCACCCTAGTCAGAACGGTGGTTTCGGGACCACGAATCCGAGTCA
30625652 GAAAAATGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (57 bp):
GATTTTTCACCCTAGTCAGAACGGTGGTTTCGGGACCACGAATCCGAGTCAAAGCTC
Found at i:30626874 original size:28 final size:26
Alignment explanation
Indices: 30626843--30626966 Score: 115
Period size: 28 Copynumber: 4.5 Consensus size: 26
30626833 ATTTGATACC
30626843 GAGCACTAAGTGTGCGAAATCGGTCATT
1 GAGCACTAAGTGTGC-AAATCGG-CATT
* * *
30626871 GAGCACTAAGTGTGCAAGTTGGCTTT
1 GAGCACTAAGTGTGCAAATCGGCATT
* * *
30626897 AAGCATTAAGTGTGCAAATTGG-ATTT
1 GAGCACTAAGTGTGCAAATCGGCA-TT
*
30626923 CCGAGCACTAAGTGTGCGAAATCGGTTATT
1 --GAGCACTAAGTGTGC-AAATCGG-CATT
30626953 GAGCACTAAGTGTG
1 GAGCACTAAGTGTG
30626967 AGAGAAAATT
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
26 24 0.30
27 5 0.06
28 42 0.52
29 6 0.08
30 2 0.03
31 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
GAGCACTAAGTGTGCAAATCGGCATT
Found at i:30633236 original size:70 final size:70
Alignment explanation
Indices: 30633155--30633293 Score: 251
Period size: 70 Copynumber: 2.0 Consensus size: 70
30633145 AGTATGCTAT
* *
30633155 TTAATTAAGTATTAAAATTAGCATGTCTTTTAAAGCAAGGGGTTTAAAATGAAATTAAGCCGTGA
1 TTAATTAAGTATTAAAATTAGCATGTCTTTTAAAGAAAGGGGTTTAAAATGAAATTAAGCCATGA
30633220 ATAAA
66 ATAAA
*
30633225 TTAATTAAGTATTAAAATTAGCATGTCTTTTAAAGAAAGGGGTTTAAAATGAAATTATGCCATGA
1 TTAATTAAGTATTAAAATTAGCATGTCTTTTAAAGAAAGGGGTTTAAAATGAAATTAAGCCATGA
30633290 ATAA
66 ATAA
30633294 GTTTAGTGGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (70 bp):
TTAATTAAGTATTAAAATTAGCATGTCTTTTAAAGAAAGGGGTTTAAAATGAAATTAAGCCATGA
ATAAA
Found at i:30634309 original size:28 final size:27
Alignment explanation
Indices: 30634277--30634377 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 27
30634267 ATTTGATACC
30634277 GAGCACTAAGTGTGCGAAATCGGTCATT
1 GAGCACTAAGTGTGCGAAATCGGT-ATT
*
30634305 GAGCACTAAGTGTGC-AAATTGG-ATTT
1 GAGCACTAAGTGTGCGAAATCGGTA-TT
*
30634331 CCGAGCACTAAGTGTGCGAAATCAGTTATT
1 --GAGCACTAAGTGTGCGAAATC-GGTATT
30634361 GAGCACTAAGTGTGCGA
1 GAGCACTAAGTGTGCGA
30634378 GAAAATTTTT
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
25 1 0.02
26 2 0.03
27 6 0.09
28 47 0.73
29 4 0.06
30 3 0.05
31 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (27 bp):
GAGCACTAAGTGTGCGAAATCGGTATT
Found at i:30634345 original size:56 final size:55
Alignment explanation
Indices: 30634261--30634375 Score: 185
Period size: 56 Copynumber: 2.1 Consensus size: 55
30634251 TTCACTAAAC
* *
30634261 GTGCAAATTTGATACCGAGCACTAAGTGTGCGAAATCGGTCATTGAGCACTAAGT
1 GTGCAAATTGGATACCGAGCACTAAGTGTGCGAAATCAGTCATTGAGCACTAAGT
* *
30634316 GTGCAAATTGGATTTCCGAGCACTAAGTGTGCGAAATCAGTTATTGAGCACTAAGT
1 GTGCAAATTGGA-TACCGAGCACTAAGTGTGCGAAATCAGTCATTGAGCACTAAGT
30634372 GTGC
1 GTGC
30634376 GAGAAAATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
55 11 0.20
56 44 0.80
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (55 bp):
GTGCAAATTGGATACCGAGCACTAAGTGTGCGAAATCAGTCATTGAGCACTAAGT
Found at i:30639382 original size:40 final size:40
Alignment explanation
Indices: 30639293--30639556 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
30639283 TTGAATGATG
* *
30639293 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
30639332 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
30639372 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
30639411 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
30639451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
30639491 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
30639532 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
30639557 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30639574 original size:120 final size:118
Alignment explanation
Indices: 30639293--30639589 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
30639283 TTGAATGATG
* *
30639293 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
30639353 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
30639411 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
30639476 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
30639532 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
30639590 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:30647453 original size:39 final size:40
Alignment explanation
Indices: 30647358--30647619 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
30647348 TTGAATGATG
*
30647358 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
30647396 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
30647437 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
30647476 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
30647515 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
30647554 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
30647593 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30647620 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:30653592 original size:107 final size:108
Alignment explanation
Indices: 30653388--30653595 Score: 282
Period size: 108 Copynumber: 1.9 Consensus size: 108
30653378 TGTGGTTGCC
*
30653388 CCCCCCATTGCCGTGAGCTAAAGAGAAGAAAGGAGAAAAATTTGTGTTCATCCTTTCTCACCTTC
1 CCCCCCATTGCCGTGAGCTAAAAAGAAGAAAGGAGAAAAATTTGTGTTCATCCTTTCTCACCTTC
* * *
30653453 ATTTTAGCCTAAATTAGAAAGAAAAACAAAGAAAAAAATTTGT
66 ATCTTAGCCAAAACTAGAAAGAAAAACAAAGAAAAAAATTTGT
** *
30653496 CCCCCCATTGCCGTGAGCTAAACAAG-AGAAAGG-G-GGAATTT-TGTTCATCCTTTTCTCATCT
1 CCCCCCATTGCCGTGAGCTAAA-AAGAAGAAAGGAGAAAAATTTGTGTTCATCC-TTTCTCACCT
30653557 TCATGCTT-GCCAAAAACTAGAAAGAAAAACAAAGAAAAA
64 TCAT-CTTAGCC-AAAACTAGAAAGAAAAACAAAGAAAAA
30653596 TTTTCTCATC
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
105 9 0.10
106 21 0.24
107 28 0.31
108 29 0.33
109 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (108 bp):
CCCCCCATTGCCGTGAGCTAAAAAGAAGAAAGGAGAAAAATTTGTGTTCATCCTTTCTCACCTTC
ATCTTAGCCAAAACTAGAAAGAAAAACAAAGAAAAAAATTTGT
Found at i:30654232 original size:132 final size:131
Alignment explanation
Indices: 30654069--30654330 Score: 470
Period size: 132 Copynumber: 2.0 Consensus size: 131
30654059 TTAATGAGCA
*
30654069 ATGCATGTGTTAAATTGATGAAAAGGGGGAGGATGCTTTACTAGTGTGTATATGTGTGTATTAAG
1 ATGCATGTGTTAAATTGATGAAAAGGGGGAGGATGCTTTACTAGTGTGTACATGTGTGTATTAAG
30654134 TGTTGAAATCGACCCCAAAAATAGACATGCATATTCGGCCAAGGGGAAAGAAATTAGCTAATATG
66 TGTTGAAATCGACCCCAAAAATAGACATGCATATTCGGCCAA-GGGAAAGAAATTAGCTAATATG
30654199 TT
130 TT
30654201 ATGCATGTGTTAAATTGATGAAAAGGGGGAGGATGCTTTACTAGTGTGTACATGTGTGTATTAAG
1 ATGCATGTGTTAAATTGATGAAAAGGGGGAGGATGCTTTACTAGTGTGTACATGTGTGTATTAAG
* * * *
30654266 TGTTGAAATTGACCCCAAAAATGGACATGCATATTCGGTCAAGGGCAAGAAATTAGCTAATATGT
66 TGTTGAAATCGACCCCAAAAATAGACATGCATATTCGGCCAAGGGAAAGAAATTAGCTAATATGT
30654331 GGTGTTGATG
Statistics
Matches: 125, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
131 22 0.18
132 103 0.82
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.30
Consensus pattern (131 bp):
ATGCATGTGTTAAATTGATGAAAAGGGGGAGGATGCTTTACTAGTGTGTACATGTGTGTATTAAG
TGTTGAAATCGACCCCAAAAATAGACATGCATATTCGGCCAAGGGAAAGAAATTAGCTAATATGT
T
Found at i:30654798 original size:40 final size:40
Alignment explanation
Indices: 30654768--30654937 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
30654758 GGACTAAGAT
* *
30654768 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
30654808 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
30654848 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGAGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
30654888 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
30654927 CCGAAGGCATT
1 CCGAAGGCATT
30654938 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:30654852 original size:80 final size:79
Alignment explanation
Indices: 30654715--30654939 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
30654705 TTGAATGCTG
* * * * * * *
30654715 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
30654779 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
30654795 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* **
30654860 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * * * *
30654875 TCCGAGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
30654940 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 36 0.30
80 82 0.67
81 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:30654957 original size:79 final size:79
Alignment explanation
Indices: 30654790--30654972 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 79
30654780 GTGCGAGATA
* * *
30654790 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCC-GGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
30654855 CATTCGTGCGAGTTG
65 CATTCGAACGAGGAG
* * * *
30654870 TTAAATCCGAGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCG-GTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
30654934 CATTTGAACGAGGAG
65 CATTCGAACGAGGAG
* *
30654949 CTATATCCGGTTAAATCCCGAAGG
1 CTAAATCCGGTTAAGTCCCGAAGG
30654973 TACGTGATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 13 0.15
79 48 0.56
80 25 0.29
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CTAAATCCGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAG
Found at i:30655827 original size:54 final size:54
Alignment explanation
Indices: 30655763--30655868 Score: 203
Period size: 54 Copynumber: 2.0 Consensus size: 54
30655753 CCATGCGAAG
30655763 ATGGCTTGTAGAAGTGGAGTATGGCATTAGACCATTCGTATTTATGAATGTAAA
1 ATGGCTTGTAGAAGTGGAGTATGGCATTAGACCATTCGTATTTATGAATGTAAA
*
30655817 ATGGCTTGTAGAAGTGGAGTATGGCATTAGACCATTCGTGTTTATGAATGTA
1 ATGGCTTGTAGAAGTGGAGTATGGCATTAGACCATTCGTATTTATGAATGTA
30655869 TAGATGGTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.34
Consensus pattern (54 bp):
ATGGCTTGTAGAAGTGGAGTATGGCATTAGACCATTCGTATTTATGAATGTAAA
Found at i:30663639 original size:17 final size:17
Alignment explanation
Indices: 30663609--30663692 Score: 69
Period size: 17 Copynumber: 4.9 Consensus size: 17
30663599 AGTTTTTACC
* *
30663609 AAATGACAGCTCATGCA
1 AAATAACAGTTCATGCA
* ***
30663626 AAATAATAGTTCATATG
1 AAATAACAGTTCATGCA
* * * *
30663643 AAACATCAGTTCATACC
1 AAATAACAGTTCATGCA
*
30663660 AAATAACAATTCATGCA
1 AAATAACAGTTCATGCA
30663677 AAATAACAGTTCATGC
1 AAATAACAGTTCATGC
30663693 TTTATCATAA
Statistics
Matches: 50, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.25
Consensus pattern (17 bp):
AAATAACAGTTCATGCA
Found at i:30663660 original size:51 final size:51
Alignment explanation
Indices: 30663583--30663690 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
30663573 CCAAACATCT
* ** * * *
30663583 GTTCATATGAAATAACAGTTTTTACCAAATGACAGCTCATGCAAAATAATA
1 GTTCATATGAAACAACAGTTCATACCAAATAACAACTCATGCAAAATAACA
* *
30663634 GTTCATATGAAACATCAGTTCATACCAAATAACAATTCATGCAAAATAACA
1 GTTCATATGAAACAACAGTTCATACCAAATAACAACTCATGCAAAATAACA
30663685 GTTCAT
1 GTTCAT
30663691 GCTTTATCAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.29
Consensus pattern (51 bp):
GTTCATATGAAACAACAGTTCATACCAAATAACAACTCATGCAAAATAACA
Found at i:30666165 original size:22 final size:21
Alignment explanation
Indices: 30666131--30666181 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
30666121 ATTCTAAATG
*
30666131 TTCTAATATTTTATTTA-ATTAA
1 TTCTAAT-TTTTAATTATA-TAA
30666153 TTCTAATTGTTTAATTATATAA
1 TTCTAATT-TTTAATTATATAA
30666175 -TCTAATT
1 TTCTAATT
30666182 ACGATTTTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 8 0.31
22 17 0.65
23 1 0.04
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (21 bp):
TTCTAATTTTTAATTATATAA
Found at i:30666181 original size:31 final size:31
Alignment explanation
Indices: 30666117--30666182 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
30666107 ACTTAAAATT
* * *
30666117 ATTAATTCTAAATGTTCTAATATTTTATTTA
1 ATTAATTCTAAATGTTCTAATATATAATCTA
*
30666148 ATTAATTCTAATTGTT-TAATTATATAATCTA
1 ATTAATTCTAAATGTTCTAA-TATATAATCTA
30666179 ATTA
1 ATTA
30666183 CGATTTTCGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (31 bp):
ATTAATTCTAAATGTTCTAATATATAATCTA
Found at i:30736674 original size:14 final size:14
Alignment explanation
Indices: 30736655--30736682 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
30736645 AGAAAATCCT
30736655 CCAAATTTTTCATG
1 CCAAATTTTTCATG
30736669 CCAAATTTTTCATG
1 CCAAATTTTTCATG
30736683 ATCTCTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
CCAAATTTTTCATG
Found at i:30742551 original size:26 final size:26
Alignment explanation
Indices: 30742514--30742623 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
30742504 TGATACAAAT
*
30742514 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
30742540 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
30742566 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
30742592 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
30742618 TGATAA
1 TGATAA
30742624 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:30751765 original size:94 final size:94
Alignment explanation
Indices: 30751651--30751827 Score: 273
Period size: 94 Copynumber: 1.9 Consensus size: 94
30751641 GTTATGTGAG
* * *
30751651 AGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGCATTGAGACGAGGGCTAGTGTAAAACGTG
1 AGCCAATGTAAGACCATGTCTGGGACATGGAATCGGCATAGAGACGAGGGCCAGTGTAAAACGTG
30751716 TCTGGGACATGCATCAGCCACATTACGAT
66 TCTGGGACATGCATCAGCCACATTACGAT
* * * * * *
30751745 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGATGTG
1 AGCCAATGTAAGACCATGTCTGGGACATGGAATCGGCATAGAGACGAGGGCCAGTGTAAAACGTG
30751810 TCTGGGACATGCATCAGC
66 TCTGGGACATGCATCAGC
30751828 TAAGCTTCGT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (94 bp):
AGCCAATGTAAGACCATGTCTGGGACATGGAATCGGCATAGAGACGAGGGCCAGTGTAAAACGTG
TCTGGGACATGCATCAGCCACATTACGAT
Found at i:30751860 original size:44 final size:46
Alignment explanation
Indices: 30751647--30751918 Score: 165
Period size: 48 Copynumber: 5.8 Consensus size: 46
30751637 TTAGGTTATG
* * * * *
30751647 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGCATTGAGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCGTAGAGA
* * * * * * * *
30751695 CGAGGGCTAGTGTAAAACGTGTCTGGGACATGCATCAGC-CACATTA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCGTAGA-GA
* * *
30751741 CGA-TAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGA
1 TGAGT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCGTAGAGA
** *
30751789 TGAGTGCCAGTGTAAGATGTGTCTGGGACATGCATCAGC-TA-AGC
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCGTAGAGA
** * * * * *
30751833 TTCGTGCTAGTGTAAGACATGTTTGGGACATGCATCAGCACTTATACA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAG--CGTAGAGA
* * *
30751881 AGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
30751919 GGTAACTTAA
Statistics
Matches: 173, Mismatches: 39, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
44 34 0.20
45 3 0.02
46 27 0.16
47 40 0.23
48 48 0.28
49 16 0.09
50 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCGTAGAGA
Found at i:30752783 original size:55 final size:55
Alignment explanation
Indices: 30752668--30752799 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 55
30752658 CTTAAACTTT
* ** * * *
30752668 TAAGTCAGTATTGTCCACAGGTAGGCCACATGGGCGTGTGACATAGTCGTGTCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACAGACGTGTGACATAGCCGTGCCTA
* *
30752723 TAAGTCAGTATTGTCCACGGGTAGGCCACACAGACGTGTGTCATTGCCGTGCCCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACAGACGTGTGACATAGCCGTG-CCTA
*
30752779 -AAGTCAGTGTTG-CACACGGGT
1 TAAGTCAGTATTGTC-CACGGGT
30752800 TAAGGGCATG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
54 1 0.02
55 62 0.94
56 3 0.05
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACGGGTAGGCCACACAGACGTGTGACATAGCCGTGCCTA
Found at i:30756716 original size:43 final size:43
Alignment explanation
Indices: 30756660--30756772 Score: 133
Period size: 43 Copynumber: 2.6 Consensus size: 43
30756650 ATATCGTACA
*
30756660 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAC-ATGT-CG
1 ATGCCAATGTCCCAGACGTGGTCTTACATG-AATCACAAT-TACG
* *
30756703 ATGCGACTGTCCCAGACAG-GGTCTTACATGAATCACAATTACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGAATCACAATTACG
* *
30756746 ATGCCAATGTCCCAAACATGGTCTTAC
1 ATGCCAATGTCCCAGACGTGGTCTTAC
30756773 TCTAAATCCC
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
42 7 0.12
43 51 0.86
44 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAATCACAATTACG
Found at i:30758459 original size:40 final size:40
Alignment explanation
Indices: 30758359--30758530 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
30758349 GCTCCTCGTT
* * *
30758359 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
30758399 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30758438 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
30758478 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
30758518 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30758531 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30758543 original size:80 final size:79
Alignment explanation
Indices: 30758359--30758583 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
30758349 GCTCCTCGTT
* * * * *
30758359 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
30758423 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
30758438 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
30758503 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
30758518 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
30758582 GA
63 GA
30758584 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:30758592 original size:41 final size:41
Alignment explanation
Indices: 30758515--30758592 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30758505 TTTGTATCTC
* * *
30758515 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30758556 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30758593 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30765661 original size:47 final size:46
Alignment explanation
Indices: 30765586--30765952 Score: 188
Period size: 47 Copynumber: 7.8 Consensus size: 46
30765576 TGGGTTATGT
* * *
30765586 GAGAGCCAGTGCAAGACCATTTCTGGGACATGGCATCAGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCATTGAGAC
* *
30765634 GAGGGCTAGTGTAAGACGTGTCTGGGACATGCATCAGCCACATT---AC
1 GAGAGCCAGTGTAAGACGTGTCTGGGACATGCATCAG---CATTGAGAC
* * * * * *
30765680 GATAGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCGTAGAGAT
1 GAGAGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCATTGAGAC
* * * * ** *
30765728 GAGTGCCAGTGCAAGACGTGTCTGGGACATGCATCGGCCTCAATGAT
1 GAGAGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCATTGA-GAC
* * * *
30765775 GATAGCCAGTGTAAGACGTGTCTAGGACATGCATC-G-ACTAAG-C
1 GAGAGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCATTGAGAC
*** * * * * * *
30765818 TTCATGCCAGTGTAAGACATGTCTGGAATATACATCAGCACTTATACAC
1 GAGA-GCCAGTGTAAGACGTGTCTGGGACATGCATCAGCA-TT-GAGAC
* * * * *
30765867 GAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCCTCGATGAA
1 GAGAGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCATTGA-GAC
* * * *
30765916 GATAGCTAGTGTAAGACCATGTCTGGGATATGGCATC
1 GAGAGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATC
30765953 GGCAACTTAA
Statistics
Matches: 247, Mismatches: 54, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.00
44 27 0.11
45 5 0.02
46 34 0.14
47 73 0.30
48 46 0.19
49 54 0.22
50 7 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCATTGAGAC
Found at i:30765750 original size:94 final size:94
Alignment explanation
Indices: 30765589--30765903 Score: 300
Period size: 94 Copynumber: 3.4 Consensus size: 94
30765579 GTTATGTGAG
* * * * * * *
30765589 AGCCAGTGCAAGACCATTTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCCAGTGTAAGACGTG
*
30765654 TCTGGGACATGCATCAGCCAC-ATTACGAT
65 TCTGGGACATGCATCAGCCACTATCACGAT
* *
30765683 AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGCAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCCAGTGTAAGACGTG
* * * * *
30765748 TCTGGGACATGCATCGGCCTCAATGATGAT
65 TCTGGGACATGCATCAGCCACTATCACGAT
* * * * * *
30765778 AGCCAGTGTAAGA-CGTGTCTAGGACAT-GCATCGACTA-AGCTTCA-TGCCAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAG-ATGAGTGCCAGTGTAAGACGTG
* * * *
30765839 TCTGGAATATACATCAG-CACTTATACACGAG
65 TCTGGGACATGCATCAGCCAC-TAT-CACGAT
* *
30765870 AGCTAGTGTAAGACCATGTCTGGGACATAGCATC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
30765904 AGCCTCGATG
Statistics
Matches: 182, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
90 2 0.01
91 32 0.18
92 19 0.10
93 19 0.10
94 91 0.50
95 19 0.10
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCCAGTGTAAGACGTGT
CTGGGACATGCATCAGCCACTATCACGAT
Found at i:30766061 original size:33 final size:33
Alignment explanation
Indices: 30766019--30766084 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
30766009 CAACTTTAAG
30766019 AGTTAAGAAAGAGATTTAATAAGGAAAGGATGA
1 AGTTAAGAAAGAGATTTAATAAGGAAAGGATGA
* *
30766052 AGTTAAGAAAGAGTTTTAATAAGGAAAGTATGA
1 AGTTAAGAAAGAGATTTAATAAGGAAAGGATGA
30766085 TACTATTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (33 bp):
AGTTAAGAAAGAGATTTAATAAGGAAAGGATGA
Found at i:30767995 original size:13 final size:13
Alignment explanation
Indices: 30767977--30768002 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30767967 ATATCTCTAG
30767977 AAATTTTCTGAAA
1 AAATTTTCTGAAA
30767990 AAATTTTCTGAAA
1 AAATTTTCTGAAA
30768003 TAATCTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
AAATTTTCTGAAA
Found at i:30768273 original size:20 final size:18
Alignment explanation
Indices: 30768226--30768274 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
30768216 CAAGATAAAC
30768226 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
30768243 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
30768263 ATTAAATTAATA
1 ATTAAATTAATA
30768275 GAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:30774549 original size:5 final size:5
Alignment explanation
Indices: 30774539--30774569 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
30774529 ATAAATAGTA
30774539 AAATT AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT AAATT A
30774570 CTAGAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AAATT
Found at i:30780662 original size:18 final size:19
Alignment explanation
Indices: 30780639--30780681 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
30780629 TTCATTCTGA
*
30780639 TATTTTATATTTT-GTCTT
1 TATTTTATATTTTAGTATT
*
30780657 TATTTTATTTTTTAGTATT
1 TATTTTATATTTTAGTATT
30780676 TATTTT
1 TATTTT
30780682 TCTTAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (19 bp):
TATTTTATATTTTAGTATT
Found at i:30784366 original size:31 final size:31
Alignment explanation
Indices: 30784331--30784394 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
30784321 CCTTTTCGTA
30784331 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
30784362 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
30784393 TT
1 TT
30784395 ACTGTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:30784706 original size:26 final size:25
Alignment explanation
Indices: 30784603--30784711 Score: 125
Period size: 25 Copynumber: 4.4 Consensus size: 25
30784593 CTGGAGGCCC
* *
30784603 AGCCTCTTTTAAT-AACTAGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
30784627 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
30784652 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
30784677 AGCCCTTTTTCGGTAAACTGGGGC-AT
1 AGCCC-TTTT-GATAAACTGGGGCAAA
30784703 AGCCCTTTT
1 AGCCCTTTT
30784712 TGCACTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 7 0.09
24 12 0.16
25 35 0.47
26 10 0.13
27 11 0.15
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:30787439 original size:24 final size:25
Alignment explanation
Indices: 30787412--30787463 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
30787402 CGAATGAGAA
*
30787412 ATCCTGTTATA-AGGCTTCT-CGAGC
1 ATCCTGTTATATA-GCTCCTGCGAGC
30787436 ATCCTGTTATATAGCTCCTGCGAGC
1 ATCCTGTTATATAGCTCCTGCGAGC
30787461 ATC
1 ATC
30787464 ATGATCGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (25 bp):
ATCCTGTTATATAGCTCCTGCGAGC
Found at i:30795706 original size:21 final size:18
Alignment explanation
Indices: 30795658--30795699 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 18
30795648 AAACACCAAG
30795658 ATAAAAATATACAATAAT
1 ATAAAAATATACAATAAT
30795676 ATAAATAATATAACTAATAAT
1 ATAAA-AATAT-AC-AATAAT
30795697 ATA
1 ATA
30795700 TGAAATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
19 5 0.24
20 2 0.10
21 9 0.43
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAAATATACAATAAT
Found at i:30795746 original size:11 final size:11
Alignment explanation
Indices: 30795723--30795757 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
30795713 ACTAAAAACA
30795723 ATAATATAA-AT
1 ATAAT-TAATAT
30795734 ATAATTAATAT
1 ATAATTAATAT
30795745 ATAATTAATAT
1 ATAATTAATAT
30795756 AT
1 AT
30795758 GATAAAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 3 0.13
11 20 0.87
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
ATAATTAATAT
Found at i:30798093 original size:206 final size:207
Alignment explanation
Indices: 30797723--30798221 Score: 698
Period size: 206 Copynumber: 2.4 Consensus size: 207
30797713 ATCCGAGAGT
* * * * *
30797723 CAAATCTGCCATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATC-TA
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTG
* * * * *
30797787 CTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACCC
66 CTTCAGTAGAAACATCTGAAGGTGAGATCTGCTATGTATCTACACTCCGTCGAATATGGAGACCC
** *
30797852 CAAACTTTGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAA
131 CAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAA
30797917 ACACGTGAAAGC
196 ACACGTGAAAGC
30797929 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTG
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTG
* * ** * * **
30797994 TTTCAGTGGAATTATCTGAAGGTGAGATCTGCTATGTATCTACTAC-CCGTTGAA-GTGGAGATG
66 CTTCAGTAGAAACATCTGAAGGTGAGATCTGCTATGTATCTAC-ACTCCGTCGAATATGGAGACC
* * *
30798057 CTAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
130 CCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTA
30798122 AACACGTGAAAGC
195 AACACGTGAAAGC
* * * *
30798135 CAAATCAGCTATGTCTTTGATTTGGTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTG
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTG
* *
30798200 CTTTAGTATAAACATCTGAAGG
66 CTTCAGTAGAAACATCTGAAGG
30798222 CCAAATGTAA
Statistics
Matches: 257, Mismatches: 34, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
206 213 0.83
207 43 0.17
208 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (207 bp):
CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTG
CTTCAGTAGAAACATCTGAAGGTGAGATCTGCTATGTATCTACACTCCGTCGAATATGGAGACCC
CAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAA
ACACGTGAAAGC
Found at i:30799896 original size:39 final size:39
Alignment explanation
Indices: 30799836--30799929 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 39
30799826 ACAAAGCATG
* *
30799836 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGAATATAACACCAGCACGAATGCCTT
*
30799877 CGGGACTTAGCCCGAATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGAATATAACACCAGCACGAATGCCTT
30799916 CGGGACTTAGCCCG
1 CGGGACTTAGCCCG
30799930 GATGAACATT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
39 42 0.84
40 2 0.04
41 6 0.12
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGAATATAACACCAGCACGAATGCCTT
Found at i:30799993 original size:60 final size:60
Alignment explanation
Indices: 30799900--30800052 Score: 306
Period size: 60 Copynumber: 2.5 Consensus size: 60
30799890 GAATATAACG
30799900 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATGAACATTTACCTAACCTATTATCAGCA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATGAACATTTACCTAACCTATTATCAGCA
30799960 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATGAACATTTACCTAACCTATTATCAGCA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATGAACATTTACCTAACCTATTATCAGCA
30800020 CCAGCACGAATGCCTTCGGGACTTAGCCCGGAT
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGAT
30800053 ATAATACCAG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 93 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (60 bp):
CCAGCACGAATGCCTTCGGGACTTAGCCCGGATGAACATTTACCTAACCTATTATCAGCA
Found at i:30800073 original size:39 final size:39
Alignment explanation
Indices: 30800019--30800132 Score: 201
Period size: 39 Copynumber: 2.9 Consensus size: 39
30800009 TATTATCAGC
30800019 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAT
1 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAT
* *
30800058 ACCAGCACGAATGCCTTCAGGACTTATCCCGGATATAAT
1 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAT
*
30800097 ACCAACACGAATGCCTTCGGGACTTAGCCCGGATAT
1 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATAT
30800133 TTTTCCAGCA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (39 bp):
ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAT
Found at i:30800170 original size:39 final size:39
Alignment explanation
Indices: 30800125--30800217 Score: 125
Period size: 39 Copynumber: 2.4 Consensus size: 39
30800115 GGGACTTAGC
* * *
30800125 CCGGATATTTTTCCAGCACT-TATCCTGCGGACTTTAAGT
1 CCGGATATTTTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
* *
30800164 CTGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGT
30800203 CCGGATATTTTTCCA
1 CCGGATATTTTTCCA
30800218 ATACCATGCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
38 1 0.02
39 45 0.98
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:30815996 original size:19 final size:19
Alignment explanation
Indices: 30815924--30815990 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
30815914 TTGGTAGATT
* *
30815924 AGTGCATACTGGCACATAA
1 AGTGCATACTAGCACACAA
* * *
30815943 AGAGCATCCTAGTACACAA
1 AGTGCATACTAGCACACAA
*
30815962 AGTACATACTAGCACACAA
1 AGTGCATACTAGCACACAA
30815981 AGTGCATACT
1 AGTGCATACT
30815991 GACACATAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.19
Consensus pattern (19 bp):
AGTGCATACTAGCACACAA
Found at i:30824431 original size:36 final size:36
Alignment explanation
Indices: 30824384--30824452 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
30824374 CGGAGGACTA
*
30824384 AGGCAAATGAGTAGTCAATGGTAGTAGTAGTAGTAG
1 AGGCAAATGAGTAGTCAACGGTAGTAGTAGTAGTAG
*
30824420 AGGCAAATGAGTAGTCAACGGTAGTAGTTGTAG
1 AGGCAAATGAGTAGTCAACGGTAGTAGTAGTAG
30824453 ATGAAGAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.35, C:0.07, G:0.33, T:0.25
Consensus pattern (36 bp):
AGGCAAATGAGTAGTCAACGGTAGTAGTAGTAGTAG
Found at i:30826206 original size:40 final size:40
Alignment explanation
Indices: 30826143--30826237 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
30826133 ATCTCCGTCT
* *
30826143 AACCCAACACACC-A-TGTGGGGATAAAATCGACCCACCC
1 AACCCTACACACCAAGTATGGGGATAAAATCGACCCACCC
* * * *
30826181 AGCCCTACACACCAAGTATGGGGATAAAATTGACCCATCT
1 AACCCTACACACCAAGTATGGGGATAAAATCGACCCACCC
30826221 AACCCTACACACCAAGT
1 AACCCTACACACCAAGT
30826238 GGTACTGTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 11 0.23
39 1 0.02
40 36 0.75
ACGTcount: A:0.37, C:0.34, G:0.15, T:0.15
Consensus pattern (40 bp):
AACCCTACACACCAAGTATGGGGATAAAATCGACCCACCC
Found at i:30829769 original size:16 final size:15
Alignment explanation
Indices: 30829748--30829796 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
30829738 AAAGTAAGTT
30829748 AAAGAAATAAAAAATA
1 AAAGAAAT-AAAAATA
30829764 AAAGAAGAT-AAAATA
1 AAAGAA-ATAAAAATA
*
30829779 AAACGAAACAAAAATA
1 AAA-GAAATAAAAATA
30829795 AA
1 AA
30829797 CAAAAAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 10 0.34
16 17 0.59
17 2 0.07
ACGTcount: A:0.78, C:0.04, G:0.08, T:0.10
Consensus pattern (15 bp):
AAAGAAATAAAAATA
Found at i:30831705 original size:40 final size:40
Alignment explanation
Indices: 30831659--30831737 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
30831649 ACACACCATG
* *
30831659 TGGGGATAGAATCGACCCACCCAGCCCTGCACACCAAGTA
1 TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGTA
* * *
30831699 TGGGGATAAAATCGACCCATCCAGCTCTACACACTAAGT
1 TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGT
30831738 GGTACTATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.32, C:0.32, G:0.20, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGTA
Found at i:30835340 original size:19 final size:19
Alignment explanation
Indices: 30835312--30835351 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
30835302 CCATTACAAA
* * *
30835312 CTTTTTTCTTTTTTCTTTT
1 CTTTTATCTTTGTCCTTTT
30835331 CTTTTATCTTTGTCCTTTT
1 CTTTTATCTTTGTCCTTTT
30835350 CT
1 CT
30835352 ATTTGTTTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.20, G:0.03, T:0.75
Consensus pattern (19 bp):
CTTTTATCTTTGTCCTTTT
Found at i:30841664 original size:40 final size:40
Alignment explanation
Indices: 30841602--30841690 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
30841592 GTCCAACCGA
*
30841602 ACACACC-A-TATGGGTATAAAATCGTCCCACCCAGCCAT
1 ACACACCAAGTATGGGTATAAAATCGACCCACCCAGCCAT
* *
30841640 ACACACCAAGTATAGGG-ATAAAATCGACCCATCCAGCCCT
1 ACACACCAAGTAT-GGGTATAAAATCGACCCACCCAGCCAT
*
30841680 ACACACAAAGT
1 ACACACCAAGT
30841691 GGTACTGTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
38 7 0.16
39 1 0.02
40 33 0.75
41 3 0.07
ACGTcount: A:0.38, C:0.33, G:0.13, T:0.16
Consensus pattern (40 bp):
ACACACCAAGTATGGGTATAAAATCGACCCACCCAGCCAT
Found at i:30843709 original size:42 final size:42
Alignment explanation
Indices: 30843645--30843805 Score: 146
Period size: 42 Copynumber: 3.8 Consensus size: 42
30843635 CAGAAGCCCG
* * * *
30843645 AAGGCTGAACAGAAGCACATAAGTGCTAAAAAGAAACCCATA
1 AAGGTTGAACAGAAGCTCATAAGAGCTAAACAGAAACCCATA
* * *
30843687 AAGGTTGAACGGAAGCTCATAAGACCTAAACGGAAACCCATA
1 AAGGTTGAACAGAAGCTCATAAGAGCTAAACAGAAACCCATA
* * * *
30843729 AGGGTTAAAAAGAAGCTCA-ATAGAGCTGAACAGAAACCCATA
1 AAGGTTGAACAGAAGCTCATA-AGAGCTAAACAGAAACCCATA
* * * * *
30843771 AGGGTTGAA-ATGAAACTCATATGAGTTAAAAAGAA
1 AAGGTTGAACA-GAAGCTCATAAGAGCTAAACAGAA
30843806 GCTCGTTACA
Statistics
Matches: 96, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 2 0.02
42 93 0.97
43 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.16
Consensus pattern (42 bp):
AAGGTTGAACAGAAGCTCATAAGAGCTAAACAGAAACCCATA
Found at i:30843737 original size:21 final size:21
Alignment explanation
Indices: 30843677--30843737 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
30843667 GTGCTAAAAA
* *
30843677 GAAACCCATAAAGGTTGAACG
1 GAAACCCATAAGGGTTAAACG
* * ***
30843698 GAAGCTCATAAGACCTAAACG
1 GAAACCCATAAGGGTTAAACG
30843719 GAAACCCATAAGGGTTAAA
1 GAAACCCATAAGGGTTAAA
30843738 AAGAAGCTCA
Statistics
Matches: 28, Mismatches: 12, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.15
Consensus pattern (21 bp):
GAAACCCATAAGGGTTAAACG
Found at i:30843779 original size:21 final size:21
Alignment explanation
Indices: 30843676--30843779 Score: 57
Period size: 21 Copynumber: 5.0 Consensus size: 21
30843666 AGTGCTAAAA
*
30843676 AGAAACCCATAAAGGTTGAAC
1 AGAAACCCATAAGGGTTGAAC
* * * *** *
30843697 GGAAGCTCATAAGACCTAAAC
1 AGAAACCCATAAGGGTTGAAC
* * *
30843718 GGAAACCCATAAGGGTTAAAA
1 AGAAACCCATAAGGGTTGAAC
* * * *
30843739 AGAAGCTCA-ATAGAGCTGAAC
1 AGAAACCCATA-AGGGTTGAAC
30843760 AGAAACCCATAAGGGTTGAA
1 AGAAACCCATAAGGGTTGAA
30843780 ATGAAACTCA
Statistics
Matches: 56, Mismatches: 25, Indels: 4
0.66 0.29 0.05
Matches are distributed among these distances:
20 1 0.02
21 54 0.96
22 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.14
Consensus pattern (21 bp):
AGAAACCCATAAGGGTTGAAC
Found at i:30855301 original size:31 final size:31
Alignment explanation
Indices: 30855236--30855303 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
30855226 ACTTTAATTT
* *
30855236 TTGAAATTAAAAATTAGATTTATTTTGATTC
1 TTGAAATTAAAAATTAGATCTATTTTGATAC
* *
30855267 TTGAACTTAGAAATTAGATCTATTTT-AGTAC
1 TTGAAATTAAAAATTAGATCTATTTTGA-TAC
30855298 TTGAAA
1 TTGAAA
30855304 AGATTCGATG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (31 bp):
TTGAAATTAAAAATTAGATCTATTTTGATAC
Found at i:30855660 original size:38 final size:37
Alignment explanation
Indices: 30855582--30855669 Score: 95
Period size: 37 Copynumber: 2.4 Consensus size: 37
30855572 TGGAAGTAAA
** *
30855582 TTTTAAAAGTTAAATTTTTGAAAAATTAAATTCGATT
1 TTTTAAAAGTTAAATTTTTGAAAAAAAAAATTCGAAT
* * **
30855619 TTTTTAAATTTAAATTTTTGAAAAACAAAAATTTTAAT
1 TTTTAAAAGTTAAATTTTTGAAAAA-AAAAATTCGAAT
*
30855657 TTTTGAAAGTTAA
1 TTTTAAAAGTTAA
30855670 GAAACTTTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
37 23 0.56
38 18 0.44
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (37 bp):
TTTTAAAAGTTAAATTTTTGAAAAAAAAAATTCGAAT
Found at i:30855987 original size:37 final size:37
Alignment explanation
Indices: 30855941--30856027 Score: 93
Period size: 37 Copynumber: 2.3 Consensus size: 37
30855931 TTGAGAGAAT
* **
30855941 TTTGTCAAAGAATTGTTACTGTTCATCTTTATTTTTTA
1 TTTG-CAAAGAATTGTTACTATTCATCGCTATTTTTTA
* * * * *
30855979 TTTGCAAAGATTTTTTACTATTTATCGCTGTTTTTTC
1 TTTGCAAAGAATTGTTACTATTCATCGCTATTTTTTA
30856016 TTTGCAAAGAAT
1 TTTGCAAAGAAT
30856028 CACTCATGTT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
37 36 0.90
38 4 0.10
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.53
Consensus pattern (37 bp):
TTTGCAAAGAATTGTTACTATTCATCGCTATTTTTTA
Found at i:30856052 original size:37 final size:37
Alignment explanation
Indices: 30856006--30856143 Score: 141
Period size: 37 Copynumber: 3.7 Consensus size: 37
30855996 CTATTTATCG
* * * *
30856006 CTGTTTTTTCTTTGCAAAGAATCACTCATGTTCGTCT
1 CTGTCTTTTCTTTGCAGAGAATCACTCTTGTTCATCT
* * * *
30856043 CCGTCTTTTCTTTGTAGAGAATCTCTCTTATTCATCT
1 CTGTCTTTTCTTTGCAGAGAATCACTCTTGTTCATCT
* ** * *
30856080 CTATCTTTTCTTTATAGGGAATCACTCTTGTTAATCT
1 CTGTCTTTTCTTTGCAGAGAATCACTCTTGTTCATCT
* *
30856117 CTGTCTTTGCTTTGCAGGGAATCACTC
1 CTGTCTTTTCTTTGCAGAGAATCACTC
30856144 CGGTTTATCT
Statistics
Matches: 82, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (37 bp):
CTGTCTTTTCTTTGCAGAGAATCACTCTTGTTCATCT
Found at i:30858995 original size:5 final size:5
Alignment explanation
Indices: 30858985--30859030 Score: 83
Period size: 5 Copynumber: 9.2 Consensus size: 5
30858975 TATTTTATCA
*
30858985 CATAT CATAT CATAT CATAT CATAT CATAT TATAT CATAT CATAT C
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT C
30859031 CTACCCGTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
CATAT
Found at i:30860637 original size:30 final size:30
Alignment explanation
Indices: 30860603--30860702 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
30860593 TTTAATAAAA
30860603 AAATTACATTTTGACCCCTAAACTTTTTTT
1 AAATTACATTTTGACCCCTAAACTTTTTTT
* * * * * **
30860633 AAATTTCACTTAGGCCTCTAAACTTTCCTT
1 AAATTACATTTTGACCCCTAAACTTTTTTT
* **
30860663 AAATTACATTTT-AACCCTAAA-TTTTCTAA
1 AAATTACATTTTGACCCCTAAACTTTT-TTT
30860692 AAATTACATTT
1 AAATTACATTT
30860703 AGCCCCAGAA
Statistics
Matches: 52, Mismatches: 17, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
28 3 0.06
29 17 0.33
30 32 0.62
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.43
Consensus pattern (30 bp):
AAATTACATTTTGACCCCTAAACTTTTTTT
Found at i:30860939 original size:27 final size:26
Alignment explanation
Indices: 30860909--30860980 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 26
30860899 CTCATTAGAG
* *
30860909 AAAAAAGAGCAAAAAAAATTCT-AGCC
1 AAAAAAAACCAAAAAAAATTCTCAG-C
* *
30860935 AAAAAAATTCCAAAAAAAAATTTTCAGC
1 AAAAAAA-ACC-AAAAAAAATTCTCAGC
30860963 AAAAAAAACCAAAAAAAA
1 AAAAAAAACCAAAAAAAA
30860981 GGAACATTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 14 0.37
27 3 0.08
28 19 0.50
29 2 0.05
ACGTcount: A:0.68, C:0.14, G:0.06, T:0.12
Consensus pattern (26 bp):
AAAAAAAACCAAAAAAAATTCTCAGC
Found at i:30860950 original size:28 final size:27
Alignment explanation
Indices: 30860919--30860980 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
30860909 AAAAAAGAGC
*
30860919 AAAAAAAATTCT-AGCCAAAAAAATTCCA
1 AAAAAAAATTCTCAG-CAAAAAAA-ACCA
*
30860947 AAAAAAAATTTTCAGCAAAAAAAACCA
1 AAAAAAAATTCTCAGCAAAAAAAACCA
30860974 AAAAAAA
1 AAAAAAA
30860981 GGAACATTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 10 0.32
28 19 0.61
29 2 0.06
ACGTcount: A:0.68, C:0.15, G:0.03, T:0.15
Consensus pattern (27 bp):
AAAAAAAATTCTCAGCAAAAAAAACCA
Found at i:30861785 original size:16 final size:15
Alignment explanation
Indices: 30861759--30861790 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
30861749 TTTTTATAAC
30861759 TATATTATGTACATA
1 TATATTATGTACATA
30861774 TATATATATGTACATA
1 TATAT-TATGTACATA
30861790 T
1 T
30861791 CATTATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (15 bp):
TATATTATGTACATA
Found at i:30861938 original size:26 final size:23
Alignment explanation
Indices: 30861909--30861955 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 23
30861899 ATATGCATAT
*
30861909 ACATATATATATATGTATTTTTATGC
1 ACATAT-TAT-TAT-TATTATTATGC
30861935 ACATATTATTATTATTATTAT
1 ACATATTATTATTATTATTAT
30861956 TATTACCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 3 0.15
25 3 0.15
26 6 0.30
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.53
Consensus pattern (23 bp):
ACATATTATTATTATTATTATGC
Found at i:30869643 original size:72 final size:72
Alignment explanation
Indices: 30869524--30869971 Score: 412
Period size: 77 Copynumber: 6.1 Consensus size: 72
30869514 GTTACTTCCG
* *
30869524 TTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
30869588 AATTTAT
66 AATTTAT
* * * *
30869595 GTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACATGCTGAGGTATTTT
1 -TTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
30869659 CAATTTCTAT
65 CAA-TT-TAT
* * *
30869669 TTTTCAAAAAAAAATCAACTCATATTACGAGAAATGGGTTGAGCCTCAAGACATGCTGAGGT-AT
1 TTTTC---AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAAT
*
30869733 GTC--TTTCA-
63 TTCAATTT-AT
** ** *
30869741 ---AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
30869803 AATTTCTAT
66 AA-TT-TAT
** *
30869812 TTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TTTTC---AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAAT
*
30869877 TTCAATTTCT
63 TTCAATTTAT
* * *** * *
30869887 ATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACG-TCGAGGTA
1 -TTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCT-GAGGTA
*
30869951 TTTTCAATTTCCAT
61 ATTTCAATTT--AT
30869965 TTTTCAA
1 TTTTCAA
30869972 TTTCTACCTT
Statistics
Matches: 322, Mismatches: 29, Indels: 46
0.81 0.07 0.12
Matches are distributed among these distances:
66 48 0.15
67 4 0.01
70 3 0.01
71 1 0.00
72 63 0.20
73 10 0.03
74 43 0.13
75 3 0.01
76 31 0.10
77 115 0.36
78 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (72 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
AATTTAT
Found at i:30869803 original size:143 final size:147
Alignment explanation
Indices: 30869529--30870182 Score: 523
Period size: 143 Copynumber: 4.3 Consensus size: 147
30869519 TTCCGTTTTC
* * * * *
30869529 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTA
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATGTC-ATTTC
* *** * ** * * *
30869594 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACATGCTGAGGTATTTT
65 T-ATAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
30869659 CAATTTCTATTTTTCAAAA
129 CAATTTCTATTTTTCAAAA
* *
30869678 AAAAATCAACTCATATTACGAGAAATGGGTTGAGCCTCAAGACATGCTGAGGT-ATGTC-TTTC-
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATGTCATTTCT
*
30869740 A-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
66 ATAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
30869804 ATTTCTATTTTTCAAAA
131 ATTTCTATTTTTCAAAA
* ** * *
30869821 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATGTC-ATTTC
* * * *
30869886 TATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACG-TCGAGGT
65 TA---TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGT
30869950 ATTTTCAATTTCCATTTTTCAATTTCTACCTTTCAAAA
124 ATTTTCAATTT-C-----T--A--T-T---TTTCAAAA
* ** ** * * * *
30869988 AAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAG-ACAC--GCTGAGGTAATGTC-A-
* * * * *
30870052 TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
61 --TT-TCTATAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGA
*
30870117 GGTATTTTTTCAATTTATATTTTTC--AA
121 GGTA--TTTTCAATTTCTATTTTTCAAAA
* * **
30870144 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCA
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCA
30870183 GGTCACATGT
Statistics
Matches: 418, Mismatches: 49, Indels: 68
0.78 0.09 0.13
Matches are distributed among these distances:
143 117 0.28
144 4 0.01
146 7 0.02
147 1 0.00
148 4 0.01
149 48 0.11
151 40 0.10
152 1 0.00
153 20 0.05
154 1 0.00
156 35 0.08
158 4 0.01
159 1 0.00
161 2 0.00
162 1 0.00
163 1 0.00
164 2 0.00
166 3 0.01
167 46 0.11
169 14 0.03
170 50 0.12
171 1 0.00
172 12 0.03
173 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (147 bp):
AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATGTCATTTCT
ATAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTCTATTTTTCAAAA
Done.