Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 105 of 126
Found at i:31948008 original size:21 final size:21
Alignment explanation
Indices: 31947975--31948019 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
31947965 AATTTAACTC
* * *
31947975 AATTTAATGAAATTCATATTT
1 AATTCAATCAAATTCACATTT
31947996 AATTCAATCAAATTCACATTT
1 AATTCAATCAAATTCACATTT
31948017 AAT
1 AAT
31948020 CCTTATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.42
Consensus pattern (21 bp):
AATTCAATCAAATTCACATTT
Found at i:31948031 original size:11 final size:11
Alignment explanation
Indices: 31948013--31948037 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31948003 TCAAATTCAC
31948013 ATTTAATCCTT
1 ATTTAATCCTT
31948024 ATTTAATCCTT
1 ATTTAATCCTT
31948035 ATT
1 ATT
31948038 CCAAGCGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTTAATCCTT
Found at i:31951284 original size:109 final size:109
Alignment explanation
Indices: 31951146--31951349 Score: 309
Period size: 109 Copynumber: 1.9 Consensus size: 109
31951136 GTGAGCTGGG
* * * *
31951146 AATTTGATTTACACATTTCAAAGGCTACACCATGAACATTCATATAGGCATATCTTGCCATGGAT
1 AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGGAT
*
31951211 TTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
66 CTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
** * *
31951255 AATTCGATTAACACATTTTGAAGGCTACACCATGAACATTCATACAGACATATCTTTCCATGGGT
1 AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGGAT
* *
31951320 CTTGACTACATGGTCTTACACACATTCATG
66 CTTAACCACATGGTCTTACACACATTCATG
31951350 AATTGTGATA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
109 84 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (109 bp):
AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGGAT
CTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
Found at i:31953816 original size:27 final size:27
Alignment explanation
Indices: 31953776--31953848 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
31953766 CAAATTATCA
*
31953776 CCACGAGGGATATTCTTTCAGAGA-TTG
1 CCACGAAGGATATTCTTTCAGA-ATTTG
* *
31953803 CCACGAAGGCTATTCTTTCATAATTTG
1 CCACGAAGGATATTCTTTCAGAATTTG
* *
31953830 CCACAAAGGTTATTCTTTC
1 CCACGAAGGATATTCTTTC
31953849 CTTTTGTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
CCACGAAGGATATTCTTTCAGAATTTG
Found at i:31967406 original size:20 final size:20
Alignment explanation
Indices: 31967381--31967421 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
31967371 CATTGCTCAA
31967381 ATTCATATTCATCACAACAT
1 ATTCATATTCATCACAACAT
31967401 ATTCATATTCATCACAACAT
1 ATTCATATTCATCACAACAT
31967421 A
1 A
31967422 CCTGATTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (20 bp):
ATTCATATTCATCACAACAT
Found at i:31967592 original size:42 final size:42
Alignment explanation
Indices: 31967533--31967637 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
31967523 CAATGCCAAC
* * *
31967533 GTCCCAGAC-GTGGTCTTACATGTAATC-AATATCGAT-GTCATT
1 GTCCCAGACAG-GGTCTTACACGAAATCAAATAT-GATACTCA-T
*
31967575 GTCCCAGACAGGGTCTTACACGAAATCAAATATGATACTGAT
1 GTCCCAGACAGGGTCTTACACGAAATCAAATATGATACTCAT
*
31967617 GTCCCAGACATGGTCTTACAC
1 GTCCCAGACAGGGTCTTACAC
31967638 ATAAATCTCA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
42 47 0.85
43 8 0.15
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACACGAAATCAAATATGATACTCAT
Found at i:31967676 original size:86 final size:84
Alignment explanation
Indices: 31967533--31967693 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 84
31967523 CAATGCCAAC
* ** * **
31967533 GTCCCAGACGTGGTCTTACATGTAATCAATATCGATGTCATTGTCCCAGACAGGGTCTTACACGA
1 GTCCCAGACATGGTCTTACACATAATCAATATCGATGCCAACGTCCCAGACAGGGTCTTACACGA
31967598 -AATCAAATATGATACTGAT
66 TAA-CAAATATGATACTGAT
31967617 GTCCCAGACATGGTCTTACACATAAATCTCAA-ATCGATGCCAACGTCCCAGAC-GTGGTCTTAC
1 GTCCCAGACATGGTCTTACACAT-AA--TCAATATCGATGCCAACGTCCCAGACAG-GGTCTTAC
31967680 ACGATAACAAATAT
62 ACGATAACAAATAT
31967694 CGGAATCCTA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
84 20 0.30
85 3 0.05
86 37 0.56
87 6 0.09
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (84 bp):
GTCCCAGACATGGTCTTACACATAATCAATATCGATGCCAACGTCCCAGACAGGGTCTTACACGA
TAACAAATATGATACTGAT
Found at i:31973418 original size:18 final size:21
Alignment explanation
Indices: 31973376--31973423 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
31973366 TTACATTTCA
*
31973376 TTTAATTTTGTTTATGAATTC
1 TTTAATTTTGTATATGAATTC
31973397 TTTAATTTT-TATA-GAATT-
1 TTTAATTTTGTATATGAATTC
31973415 TTTAGATTT
1 TTTA-ATTT
31973424 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 3 0.12
21 9 0.36
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.62
Consensus pattern (21 bp):
TTTAATTTTGTATATGAATTC
Found at i:31973423 original size:19 final size:18
Alignment explanation
Indices: 31973386--31973423 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
31973376 TTTAATTTTG
31973386 TTTATGAATTCTTTAATT
1 TTTATGAATTCTTTAATT
31973404 TTTATAGAATT-TTTAGATT
1 TTTAT-GAATTCTTTA-ATT
31973423 T
1 T
31973424 AAAAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.61
Consensus pattern (18 bp):
TTTATGAATTCTTTAATT
Found at i:31980121 original size:9 final size:9
Alignment explanation
Indices: 31980107--31980131 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
31980097 TAAACAATTC
31980107 AATAATATA
1 AATAATATA
31980116 AATAATATA
1 AATAATATA
31980125 AATAATA
1 AATAATA
31980132 AAAAATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AATAATATA
Found at i:31980677 original size:9 final size:9
Alignment explanation
Indices: 31980663--31980699 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
31980653 TATAGTTTGA
31980663 TATTCGAAT
1 TATTCGAAT
31980672 TATTCGAAT
1 TATTCGAAT
*
31980681 TATTCGAGT
1 TATTCGAAT
31980690 TATTCGAAT
1 TATTCGAAT
31980699 T
1 T
31980700 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:31980769 original size:9 final size:9
Alignment explanation
Indices: 31980752--31980782 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
31980742 TCGAGTTGAT
31980752 TCGAATAAC
1 TCGAATAAC
*
31980761 TCGATTAAC
1 TCGAATAAC
31980770 TCGAATAAC
1 TCGAATAAC
31980779 TCGA
1 TCGA
31980783 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:31982561 original size:9 final size:10
Alignment explanation
Indices: 31982537--31982562 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
31982527 TATTTTTAAA
31982537 TAAAAAATAT
1 TAAAAAATAT
31982547 TAAAAAATAT
1 TAAAAAATAT
31982557 TAAAAA
1 TAAAAA
31982563 CGAGAGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
TAAAAAATAT
Found at i:31986813 original size:15 final size:15
Alignment explanation
Indices: 31986789--31986818 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
31986779 AGAATTTTTT
*
31986789 ATATATATTTTAAAA
1 ATATAAATTTTAAAA
31986804 ATATAAATTTTAAAA
1 ATATAAATTTTAAAA
31986819 TTTTGATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATAAATTTTAAAA
Found at i:31987887 original size:54 final size:54
Alignment explanation
Indices: 31987828--31987930 Score: 197
Period size: 54 Copynumber: 1.9 Consensus size: 54
31987818 TAACGTCTAG
*
31987828 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGATAACCTAAAC
1 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACCTAAAC
31987882 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACC
1 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACC
31987931 ATTTGTTTAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (54 bp):
ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACCTAAAC
Found at i:31988139 original size:20 final size:20
Alignment explanation
Indices: 31988110--31988147 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31988100 ATATTTGAAG
*
31988110 TATAAAAAATTATTAAAAAC
1 TATAAAAAATTAATAAAAAC
*
31988130 TATAAGAAATTAATAAAA
1 TATAAAAAATTAATAAAA
31988148 TATGATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (20 bp):
TATAAAAAATTAATAAAAAC
Found at i:31988756 original size:20 final size:20
Alignment explanation
Indices: 31988727--31988765 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
31988717 ATATTTGAAG
31988727 TATAAAAAATTATTAAAAAC
1 TATAAAAAATTATTAAAAAC
*
31988747 TATAAGAAATTATTAAAAA
1 TATAAAAAATTATTAAAAA
31988766 TTCTGTCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
TATAAAAAATTATTAAAAAC
Found at i:31992663 original size:15 final size:15
Alignment explanation
Indices: 31992643--31992671 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
31992633 TGTCCTGTTA
31992643 AATAAAGTTGCTATG
1 AATAAAGTTGCTATG
31992658 AATAAAGTTGCTAT
1 AATAAAGTTGCTAT
31992672 AAGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.34
Consensus pattern (15 bp):
AATAAAGTTGCTATG
Found at i:31994535 original size:18 final size:17
Alignment explanation
Indices: 31994502--31994536 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
31994492 GGCTTGGGAA
*
31994502 AAAAATTATTGGGTTGG
1 AAAAATTATTGAGTTGG
31994519 AAAAATTATATGAGTTGG
1 AAAAATTAT-TGAGTTGG
31994537 TTTGAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (17 bp):
AAAAATTATTGAGTTGG
Found at i:31998836 original size:57 final size:57
Alignment explanation
Indices: 31998775--31999075 Score: 259
Period size: 57 Copynumber: 5.3 Consensus size: 57
31998765 TAAAATAACT
* * * *
31998775 TTCCACATATAAGATAATATTGACGGATTTCCCACATATAAGATAGTCTTGGTGGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * *
31998832 TTCCACATATACA-ATAGTCTTGGA-GGACTTCTCGCACA-A-AAGATAGTCTTGGCGAAC
1 TTCCACATTTA-AGATAGTCTT-GACGGA-TT-TCCCACATATAAGATAGTCTTGGCGGAC
* * * * * * * *
31998889 TTCCACATTTACGATAGTCCTGATGGACTTCTCACATATAAGATAGTCCTCGCAGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * ** * * * * * *
31998946 TTCCACATTTATGATAGTGTTGACAAACTTCCTATATATAAGATAGTCCTAGTGGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * * * *
31999003 TTCCACATTTATGATAGCCCTGACGGGTTTCCCACATATAAGATAGTCTTGGCGAAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
*
31999060 TTCCACATTTACGATA
1 TTCCACATTTAAGATA
31999076 ATGCCATGAC
Statistics
Matches: 196, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
55 6 0.03
56 4 0.02
57 174 0.89
58 6 0.03
59 6 0.03
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (57 bp):
TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
Found at i:31998848 original size:28 final size:28
Alignment explanation
Indices: 31998775--31999067 Score: 174
Period size: 29 Copynumber: 10.3 Consensus size: 28
31998765 TAAAATAACT
* * ** *
31998775 TTCCACATATAAGATAATATTGACGGAT
1 TTCCACATATAAGATAGTCTTGGTGGAC
31998803 TTCCCACATATAAGATAGTCTTGGTGGAC
1 TT-CCACATATAAGATAGTCTTGGTGGAC
*
31998832 TTCCACATATACA-ATAGTCTTGGAGGAC
1 TTCCACATATA-AGATAGTCTTGGTGGAC
* * * * *
31998860 TTCTCGCACAAAAGATAGTCTTGGCGAAC
1 TTC-CACATATAAGATAGTCTTGGTGGAC
* * * *
31998889 TTCCACATTTACGATAGTCCTGATGGAC
1 TTCCACATATAAGATAGTCTTGGTGGAC
* * **
31998917 TTCTCACATATAAGATAGTCCTCGCAGAC
1 TTC-CACATATAAGATAGTCTTGGTGGAC
* * * ****
31998946 TTCCACATTTATGATAGTGTTGACAAAC
1 TTCCACATATAAGATAGTCTTGGTGGAC
* * *
31998974 TTCCTATATATAAGATAGTCCTAGTGGAC
1 TTCC-ACATATAAGATAGTCTTGGTGGAC
* * * * ** **
31999003 TTCCACATTTATGATAGCCCTGACGGGT
1 TTCCACATATAAGATAGTCTTGGTGGAC
* *
31999031 TTCCCACATATAAGATAGTCTTGGCGAAC
1 TT-CCACATATAAGATAGTCTTGGTGGAC
31999060 TTCCACAT
1 TTCCACAT
31999068 TTACGATAAT
Statistics
Matches: 198, Mismatches: 60, Indels: 14
0.73 0.22 0.05
Matches are distributed among these distances:
28 93 0.47
29 105 0.53
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (28 bp):
TTCCACATATAAGATAGTCTTGGTGGAC
Found at i:32000493 original size:6 final size:6
Alignment explanation
Indices: 32000452--32000476 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32000442 AGCTTTCCTT
32000452 AAATGA AAATGA AAATGA AAATGA A
1 AAATGA AAATGA AAATGA AAATGA A
32000477 GCTGACCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:32002344 original size:21 final size:21
Alignment explanation
Indices: 32002318--32002358 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
32002308 AGAATTACAA
32002318 AAAAAAATCAAAATAATTTTC
1 AAAAAAATCAAAATAATTTTC
*
32002339 AAAAAATTCAAAATAATTTT
1 AAAAAAATCAAAATAATTTT
32002359 TAAATCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAAAATCAAAATAATTTTC
Found at i:32006846 original size:21 final size:20
Alignment explanation
Indices: 32006772--32006847 Score: 82
Period size: 21 Copynumber: 3.8 Consensus size: 20
32006762 ATTTTCGAGG
*
32006772 ATATACAATCTTACATATG-
1 ATATACAATCTTAGATATGA
** *
32006791 ATATGTAATCTTAAATATGA
1 ATATACAATCTTAGATATGA
*
32006811 TATATGCAATCTTAGATATGA
1 -ATATACAATCTTAGATATGA
32006832 CATATACAATCTTAGA
1 -ATATACAATCTTAGA
32006848 AGATATGATT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 16 0.33
21 32 0.67
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (20 bp):
ATATACAATCTTAGATATGA
Found at i:32006883 original size:21 final size:23
Alignment explanation
Indices: 32006839--32006883 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
32006829 TGACATATAC
*
32006839 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
32006862 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
32006883 A
1 A
32006884 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:32007072 original size:19 final size:21
Alignment explanation
Indices: 32007048--32007086 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
32007038 TGTTTTCTTT
*
32007048 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
32007067 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
32007087 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:32007316 original size:3 final size:3
Alignment explanation
Indices: 32007308--32007353 Score: 67
Period size: 3 Copynumber: 15.3 Consensus size: 3
32007298 ATTAATTTTG
*
32007308 TTA TTA TTA TTA TTA TTG TTA TTA TTA -TA TTA TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
32007353 T
1 T
32007354 ACCTACATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:32007347 original size:18 final size:17
Alignment explanation
Indices: 32007292--32007354 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 17
32007282 GTTTTTAGTC
32007292 TATT-TTATTA-ATT-T
1 TATTATTATTATATTAT
*
32007306 TGTTATTATTATTATTAT
1 TATTATTATTA-TATTAT
*
32007324 TGTTATTATTATATTAT
1 TATTATTATTATATTAT
32007341 ATATTATTATTATA
1 -TATTATTATTATA
32007355 CCTACATATA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.07
15 6 0.14
17 9 0.21
18 24 0.57
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TATTATTATTATATTAT
Found at i:32007725 original size:51 final size:52
Alignment explanation
Indices: 32007611--32007726 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 52
32007601 ATTTTCCACG
**
32007611 TTTT-TATAT-TATACTTATATATTTCATTTTTTTGTAAATGCATGAATATA
1 TTTTATATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATA
* * * * *
32007661 TTTTATATGTATATATTTATAT-TTTCCTTGTTTTCATAAATGCAT-TATGTA
1 TTTTATATATATATACTTATATATTTCATT-TTTTCATAAATGCATGAATATA
32007712 TTTTATATATATATA
1 TTTTATATATATATA
32007727 AGTTTTATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 4 0.07
51 28 0.51
52 23 0.42
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (52 bp):
TTTTATATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATA
Found at i:32014158 original size:44 final size:44
Alignment explanation
Indices: 32014085--32014967 Score: 211
Period size: 44 Copynumber: 20.1 Consensus size: 44
32014075 CCAAGCCTTG
* * * * *
32014085 TCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* *
32014129 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGA-CGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-CAAATCTTA
* * **** ** *
32014173 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATTGCAAATCTTA
* ** * ** * *
32014217 TCTCCCTGAGCAACAGTGGAGTAGGCTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
** * *
32014261 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGAAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
** * **** ** *
32014305 TCTTTCTAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATTGCAAATCTTA
* * * * * *
32014349 TCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * * ** *
32014393 TCTCCTTATGCAGTAGTGAAGCAGATCAAAGA-CGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-CAAATCTTA
* * * * **** ** *
32014437 TCTTTCC-AAG--GTAGTGAAAAGTAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGTG--GAGCAGATTGAAGATTGCAAATCTTA
* * * * * * * *
32014481 TCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * **
32014525 TCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
** * **** ** *
32014569 TCTTTCTAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATTGCAAATCTTA
* * * * * *
32014613 TCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * * ** *
32014657 TCTCCTTATGCAGTAGTGAAGCAGATCAAAGA-CGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-CAAATCTTA
* * * * **** ** *
32014701 TCTTTCC-AAG--GTAGTGAAAAGTAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGTG--GAGCAGATTGAAGATTGCAAATCTTA
* * * * * * * *
32014745 TCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * **
32014789 TCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
** * * **** ** *
32014833 TCTTTCAAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATTGCAAATCTTA
* * * * * * *
32014877 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * *
32014921 TCTCCCTAAGCAGTAGTGTAGCAGATCGAAGA-CGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-CAAATCTTA
32014965 TCT
1 TCT
32014968 TTCCAAGATA
Statistics
Matches: 561, Mismatches: 241, Indels: 74
0.64 0.28 0.08
Matches are distributed among these distances:
42 28 0.05
43 25 0.04
44 472 0.84
45 19 0.03
46 17 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
Found at i:32015049 original size:44 final size:44
Alignment explanation
Indices: 32015001--32015085 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
32014991 TTAAGCCAGC
32015001 AAGTCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
32015045 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
32015086 ACGAATTCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:32015059 original size:132 final size:132
Alignment explanation
Indices: 32013945--32015003 Score: 1663
Period size: 132 Copynumber: 8.0 Consensus size: 132
32013935 ATGAAACACT
* * *
32013945 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAACAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * *
32014010 TAGTGGAGTAGATTGAGGACGGA-AAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTTAGCC
66 TAGTGGAGCAGATCGAAGAC-GACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
32014074 ACC
130 ACC
* *
32014077 AAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
32014142 TAGTGGAGAAGATTGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
32014207 CC
131 CC
* * *
32014209 AAGCCTTGTCTCCCTGAGCAACAGTGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
32014274 TAGTGGAGCAGATCAAAGATGGA-AAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCC
66 TAGTGGAGCAGATCGAAGA-CGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
32014338 ACC
130 ACC
* * *
32014341 AAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCTTATGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * ** *
32014406 TAGTGAAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGGTAGTGAAAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
32014471 CC
131 CC
*
32014473 AAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
32014538 TAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
32014603 CC
131 CC
* * *
32014605 AAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCTTATGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * ** *
32014670 TAGTGAAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGGTAGTGAAAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
32014735 CC
131 CC
*
32014737 AAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
32014802 TAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
32014867 CC
131 CC
32014869 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
32014934 TAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
32014999 GC
131 CC
32015001 AAG
1 AAG
32015004 TCTTATCCTC
Statistics
Matches: 846, Mismatches: 78, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
131 4 0.00
132 840 0.99
133 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:32015107 original size:44 final size:44
Alignment explanation
Indices: 32014987--32015085 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 44
32014977 AGTGGGAAGT
* * *
32014987 AGATTTAAGCCAGCAAGTCTTATC-CTCCTGAAGTTGCAGTGGAGC
1 AGATTAAAGCTAG-AAGTCCTATCTC-CCTGAAGTTGCAGTGGAGC
* * *
32015032 AGATTAAAGCTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGT
1 AGATTAAAGCTAGAAGTCCTATCTCCCTGAAGTTGCAGTGGAGC
*
32015076 AGATTGAAGC
1 AGATTAAAGC
32015086 ACGAATTCCT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 37 0.77
45 11 0.23
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTAAAGCTAGAAGTCCTATCTCCCTGAAGTTGCAGTGGAGC
Found at i:32015337 original size:21 final size:21
Alignment explanation
Indices: 32015289--32015350 Score: 78
Period size: 19 Copynumber: 3.1 Consensus size: 21
32015279 ATTTTCGAGG
*
32015289 ATATACAGTCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
32015308 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
32015329 ATATACAATCTTAGA-A-GAT
1 ATATACAATCTTAGATATGAT
32015348 ATA
1 ATA
32015351 ATTTTGTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 23 0.61
20 1 0.03
21 14 0.37
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:32015568 original size:19 final size:21
Alignment explanation
Indices: 32015544--32015582 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
32015534 TGTTTTCTTT
*
32015544 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
32015563 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
32015583 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:32015824 original size:3 final size:3
Alignment explanation
Indices: 32015804--32015846 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
32015794 ATTAATTTTG
* *
32015804 TTA TTT TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
32015847 ACCTACATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:32027701 original size:21 final size:21
Alignment explanation
Indices: 32027676--32027729 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
32027666 CAACTAACAC
*
32027676 AATTGTAATTTTGTATTTTGT
1 AATTGTAATTTTGTAATTTGT
*
32027697 AATTGTAAATTTGTAATTTGT
1 AATTGTAATTTTGTAATTTGT
* *
32027718 ATTTGTGATTTT
1 AATTGTAATTTT
32027730 AGGAAATAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (21 bp):
AATTGTAATTTTGTAATTTGT
Found at i:32027721 original size:6 final size:7
Alignment explanation
Indices: 32027678--32027728 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
32027668 ACTAACACAA
32027678 TTGTAATT
1 TTGTAA-T
*
32027686 TTGTATT
1 TTGTAAT
32027693 TTGTAA-
1 TTGTAAT
32027699 TTGTAAAT
1 TTGT-AAT
32027707 TTGTAAT
1 TTGTAAT
32027714 TTGT-AT
1 TTGTAAT
*
32027720 TTGTGAT
1 TTGTAAT
32027727 TT
1 TT
32027729 TAGGAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 10 0.26
7 19 0.50
8 9 0.24
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.61
Consensus pattern (7 bp):
TTGTAAT
Found at i:32027970 original size:79 final size:79
Alignment explanation
Indices: 32027831--32027985 Score: 265
Period size: 79 Copynumber: 2.0 Consensus size: 79
32027821 GAGAGATAGG
* * *
32027831 AAAGCAAAAGAGAACTGTGTAATTTATTTATAATGAGAATATGCTTCTCCTAAGTTTATATTTAT
1 AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
32027896 AAACATAAGAAAGA
66 AAACATAAGAAAGA
32027910 AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
1 AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
* *
32027975 AGATATAAGAA
66 AAACATAAGAA
32027986 GTATACATTA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 71 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.33
Consensus pattern (79 bp):
AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
AAACATAAGAAAGA
Found at i:32032358 original size:38 final size:39
Alignment explanation
Indices: 32032302--32032375 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 39
32032292 TATTATTTCA
*
32032302 CATATATATAAATTAATAAATATAATCATACAATTCAAC
1 CATATATATAAATTAATAAATATAATCATAAAATTCAAC
32032341 CATA-ATATAAATTAATAAATATAATCATAAAATTC
1 CATATATATAAATTAATAAATATAATCATAAAATTC
32032376 CATATGAACG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 30 0.88
39 4 0.12
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (39 bp):
CATATATATAAATTAATAAATATAATCATAAAATTCAAC
Found at i:32033850 original size:10 final size:11
Alignment explanation
Indices: 32033832--32033861 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
32033822 ATATTTTTAG
32033832 TTTGTTTTTTT
1 TTTGTTTTTTT
32033843 TTTGTTTTTTT
1 TTTGTTTTTTT
*
32033854 TTTATTTT
1 TTTGTTTT
32033862 ATATATCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (11 bp):
TTTGTTTTTTT
Found at i:32047747 original size:133 final size:132
Alignment explanation
Indices: 32047536--32047775 Score: 367
Period size: 133 Copynumber: 1.8 Consensus size: 132
32047526 AAGCGTTTGG
32047536 ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCTTAGGCAAAGGCCAAAAGTTTGAAATATTG
1 ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCTTAGGCAAAGGCCAAAAGTTTGAAATATTG
*
32047601 TCTAGAATAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
66 TCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
32047666 AA
131 AA
* * * ** *
32047668 ATTTATTTAAGAAATTGAAGTCTATGGGTAAGTCCC-TCGGTGAA-GCCTTGAAAGTTTGAAATA
1 ATTTATTTAAGAAAATAAAGTCTATGGGTAAG-CCCTTAGGCAAAGGCC--AAAAGTTTGAAATA
*
32047731 TTGTCTAGAACAATAGAGCTTAAGGAATTAGTTTTAAGTGTTCAA
63 TTGTCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAA
32047776 TGGTAGGATT
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
131 3 0.03
132 35 0.36
133 59 0.61
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (132 bp):
ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCTTAGGCAAAGGCCAAAAGTTTGAAATATTG
TCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
AA
Found at i:32049411 original size:27 final size:29
Alignment explanation
Indices: 32049356--32049427 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 29
32049346 ATCGGTAAAT
* * *
32049356 AATGACCTTTGTGGCCTTTTTCTGTTAAAA-
1 AATG-CCTTTATGG-CTATTTCTGCTAAAAG
32049386 AA-GCCTTTATGGCTATTTCTGCTAAAAG
1 AATGCCTTTATGGCTATTTCTGCTAAAAG
*
32049414 AATGCCTTTGTGGC
1 AATGCCTTTATGGC
32049428 AATTAGTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 13 0.36
28 10 0.28
29 11 0.31
30 2 0.06
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (29 bp):
AATGCCTTTATGGCTATTTCTGCTAAAAG
Found at i:32049464 original size:27 final size:27
Alignment explanation
Indices: 32049434--32049494 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 27
32049424 TGGCAATTAG
32049434 TGAAAGAAAGTCCT-TGA-GGCTAAACTC
1 TGAAAGAAAG-CCTCT-ATGGCTAAACTC
*
32049461 TGAAATAAAGCCTCTATGGCTAAACTC
1 TGAAAGAAAGCCTCTATGGCTAAACTC
32049488 TGGAAAG
1 T-GAAAG
32049495 GAACGCCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 4 0.14
27 21 0.72
28 4 0.14
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (27 bp):
TGAAAGAAAGCCTCTATGGCTAAACTC
Found at i:32049580 original size:28 final size:27
Alignment explanation
Indices: 32049549--32049637 Score: 106
Period size: 28 Copynumber: 3.2 Consensus size: 27
32049539 AGTCTCTGGA
*
32049549 AAAGAACGCCTTTATGGCTGACTCTATT
1 AAAGAA-GCCTTTGTGGCTGACTCTATT
**
32049577 AAAGAAAGAATTTGTGGCTGACTCTATT
1 AAAG-AAGCCTTTGTGGCTGACTCTATT
* *
32049605 AAAGGAAGCCTTTGTGGTTGACTCTTTT
1 AAA-GAAGCCTTTGTGGCTGACTCTATT
32049633 AAAGA
1 AAAGA
32049638 CACCCTCGCG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 2 0.04
28 47 0.90
29 3 0.06
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (27 bp):
AAAGAAGCCTTTGTGGCTGACTCTATT
Found at i:32052233 original size:24 final size:22
Alignment explanation
Indices: 32052191--32052235 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
32052181 CAATTATTCA
*
32052191 CATTTCATATACATGTATCATT
1 CATTTCATATACATATATCATT
32052213 CATTTCATATATCAATATATCAT
1 CATTTCATATA-C-ATATATCAT
32052236 GTAACATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 1 0.05
24 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (22 bp):
CATTTCATATACATATATCATT
Found at i:32052512 original size:25 final size:25
Alignment explanation
Indices: 32052445--32052512 Score: 59
Period size: 25 Copynumber: 2.7 Consensus size: 25
32052435 TAAGCTTTTT
* *
32052445 CGAGTTGAGTAAT-AGTAAGCTCCTA
1 CGAGCTGAG-AATCAGTAAACTCCTA
* * *
32052470 AGAGCTGA-ATATCGGTAAACTCTTA
1 CGAGCTGAGA-ATCAGTAAACTCCTA
32052495 CGAGCTGAGAATCAGTAA
1 CGAGCTGAGAATCAGTAA
32052513 CCTTAATGAC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
23 1 0.03
24 2 0.06
25 29 0.88
26 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (25 bp):
CGAGCTGAGAATCAGTAAACTCCTA
Found at i:32058660 original size:27 final size:25
Alignment explanation
Indices: 32058605--32058660 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 25
32058595 TGCAGCTATT
*
32058605 TTTTTCTTTTTGTTTTCATGTTTAT
1 TTTTTCTTTTTGTTTTCATGTTTAC
**
32058630 TTTTTCTATTTTGTCTTTTTTGTTTAC
1 TTTTTCT-TTTTGT-TTTCATGTTTAC
32058657 TTTT
1 TTTT
32058661 GATTATATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 7 0.27
26 6 0.23
27 13 0.50
ACGTcount: A:0.07, C:0.09, G:0.07, T:0.77
Consensus pattern (25 bp):
TTTTTCTTTTTGTTTTCATGTTTAC
Found at i:32060104 original size:699 final size:699
Alignment explanation
Indices: 32058766--32060851 Score: 4118
Period size: 699 Copynumber: 3.0 Consensus size: 699
32058756 TACTTAACGA
32058766 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
1 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
32058831 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
66 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
32058896 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
131 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
32058961 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
196 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
32059026 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
261 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
32059091 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
326 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
32059156 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
391 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
32059221 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
456 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
32059286 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
521 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
32059351 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
586 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
32059416 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
651 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
32059465 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
1 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
32059530 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
66 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
32059595 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
131 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
32059660 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
196 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
32059725 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
261 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
32059790 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
326 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
32059855 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
391 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
32059920 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
456 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
32059985 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
521 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
32060050 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
586 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
32060115 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
651 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
32060164 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
1 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
32060229 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
66 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
32060294 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
131 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
32060359 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
196 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
32060424 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
261 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
*
32060489 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTGTAACTGACAGCTGTCTGATAAGAGCCAACC
326 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
*
32060554 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGTACAGAAGAATCTCAAGGGA
391 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
* *
32060619 ATGACACATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTGTTG
456 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
*
32060684 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTACGG
521 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
*
32060749 GTAAGCCAACGTGAAGACTGATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
586 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
32060814 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTA
651 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTA
32060852 TTCTCCATTC
Statistics
Matches: 1381, Mismatches: 6, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
699 1381 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (699 bp):
GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
Found at i:32066432 original size:73 final size:73
Alignment explanation
Indices: 32066278--32067479 Score: 1073
Period size: 73 Copynumber: 15.7 Consensus size: 73
32066268 AACATGTGAA
* *
32066278 CTGAGGCTCAACTCA-CTTTTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATC-TCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAATTAC
32066341 CTCAGCGTGTC
63 CTCAGCGTGTC
* * * * * *
32066352 CTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATGCCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
*
32066417 AACGTGTC
66 AGCGTGTC
* * *
32066425 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
**
32066489 AATGTGTC
66 AGCGTGTC
* * * * * * **
32066497 TTGGGGCTCAACTTATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAACGAAA--ACA
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT-TTTGAAAAACAGAA-ATTGAAATTAC-
*** **
32066560 GAAATG-GAAAATAC
63 CTCA-GCG--TGT-C
* * * * * ** *
32066574 CTCAGCATGTCCTGAGGCTCAACTCAC-CTCT-TGCAATATGAGTTGATTTAGAAAGCAGACATA
1 CT--G-A-G-GCTCA-ACTCATCTCTCGCAATATG-AGT-TGA-TT--TTT-GAAA---------
* * *
32066637 AAAACAGAAATTGAAAGTGA-CTCAACACGTGAGC
45 --AACAGAAATTGAAA-TTACCTC-A-GCGTG-TC
* * * ** * *
32066671 C-AAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTG-AAAGTAGAATTTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAATTACC
* *
32066734 TCGGCGTGCC
64 TCAGCGTGTC
* *
32066744 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
32066809 AGCGTGTC
66 AGCGTGTC
32066817 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAAC----A--G---A--AATT
* *
32066882 GAAAATACCTCAACGTGTC
55 GAAATTACCTCAGCGTGTC
* * *
32066901 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAATTACC
32066965 TCAGCGTGTC
64 TCAGCGTGTC
* * * *
32066975 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTT-TTGAAAAACAGAAATTGAAATTACC
**
32067040 TCAATGTGTC
64 TCAGCGTGTC
* * *
32067050 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAATTACC
*
32067114 TCAGCGTGCC
64 TCAGCGTGTC
*
32067124 CCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
32067189 AGCGTGTC
66 AGCGTGTC
32067197 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
32067262 AGCGTGTC
66 AGCGTGTC
32067270 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
32067335 AGCGTGTC
66 AGCGTGTC
32067343 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAAC----A--G---A--AATT
* *
32067408 GAAAATACCTCAACGTGTC
55 GAAATTACCTCAGCGTGTC
* * *
32067427 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
32067480 AAAAGGCTTA
Statistics
Matches: 945, Mismatches: 111, Indels: 146
0.79 0.09 0.12
Matches are distributed among these distances:
72 82 0.09
73 367 0.39
74 193 0.20
75 70 0.07
76 20 0.02
77 4 0.00
79 5 0.01
81 4 0.00
82 9 0.01
83 20 0.02
84 110 0.12
85 7 0.01
86 9 0.01
87 2 0.00
88 1 0.00
89 3 0.00
90 10 0.01
91 9 0.01
92 3 0.00
93 1 0.00
96 5 0.01
97 8 0.01
98 1 0.00
99 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
AGCGTGTC
Found at i:32067356 original size:526 final size:532
Alignment explanation
Indices: 32066323--32067465 Score: 1567
Period size: 526 Copynumber: 2.1 Consensus size: 532
32066313 TTTTTTTGAC
* * * * *
32066323 AACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
* * **
32066387 -ATTTTGAAAAGCAGAAATTGAAAATGCCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
66 TTTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
* * * **
32066451 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGGGGCTCAACTTATTTC
131 ATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTC
32066516 TCGCAATATGAGTTGATTCTTTCAAAAACATAATAACGAAAACAGAAATGGAAAATACCTCAGCA
196 TCGCAATATGAGTTGATTCTTT-------AT-AT-A-GAAAACAGAAATGGAAAATACCTCAGCA
* * *
32066581 TGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTAGAAAGCAGACATAAAAACAGAA
251 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT----A-CAG--A-AAAAACAGAA
*
32066646 ATTGAAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTT
308 ATTGAAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
** * *
32066711 TGAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
372 TGAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
32066776 TGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCA
437 TGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCA
32066841 ATATGAGTTGATTTTTGAAAAACATAAATTG
502 ATATGAGTTGATTTTTGAAAAACATAAATTG
**
32066872 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
* * *
32066937 TTTTTTGACAA-CAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
66 TTTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
*
32067001 ATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCAC
131 ATGAGTTGA-ATT-TTGAAAA-CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCAC
* * * *
32067066 CTCTCGCAATATGAGTTGATT-TTT-T-T-GACAACAGAAATTGAAATTACCTCAGCGTGCCCCG
193 CTCTCGCAATATGAGTTGATTCTTTATATAGAAAACAGAAATGGAAAATACCTCAGCATGCCCCG
* ** *
32067127 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTT-TTG-AAAAACAGAAATTGAAA-TTACCTC
258 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTACAGAAAAAACAGAAATTGAAAGTGA-CTC
* * * *
32067189 -A-GCGTG-TCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAAT
322 AACACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAAT
* * * *
32067250 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAA
385 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
32067315 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
450 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
32067380 TTTGAAAAACATAAATTG
515 TTTGAAAAACATAAATTG
32067398 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
32067463 TTT
66 TTT
32067466 GAAAAACAAA
Statistics
Matches: 540, Mismatches: 46, Indels: 39
0.86 0.07 0.06
Matches are distributed among these distances:
525 6 0.01
526 219 0.41
527 34 0.06
528 3 0.01
529 20 0.04
533 1 0.00
539 62 0.11
542 1 0.00
544 1 0.00
549 57 0.11
550 57 0.11
551 10 0.02
552 10 0.02
553 59 0.11
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (532 bp):
AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
TTTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTCTTTATATAGAAAACAGAAATGGAAAATACCTCAGCATGCCCCGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTACAGAAAAAACAGAAATTGAAAGTGACTCAACA
CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAA
TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAA
ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAA
AAACATAAATTG
Found at i:32067602 original size:69 final size:69
Alignment explanation
Indices: 32067529--32067657 Score: 204
Period size: 69 Copynumber: 1.9 Consensus size: 69
32067519 AAACATAAAC
** *
32067529 TAAAAATACCTCGGCGTGCCCCGAGGTTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAA
1 TAAAAATACCTCCACGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAA
32067594 AATT
66 AATT
* **
32067598 TAAAAATACCTCCACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 TAAAAATACCTCCACGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
32067658 GAAAAACATA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 54 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (69 bp):
TAAAAATACCTCCACGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAA
AATT
Found at i:32067864 original size:73 final size:70
Alignment explanation
Indices: 32067675--32067870 Score: 187
Period size: 73 Copynumber: 2.7 Consensus size: 70
32067665 ATAAATTAAA
* * * * * * **
32067675 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACAGAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
32067739 CCCCG
66 CCCCG
*****
32067744 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTTAAAAATACCTCAAC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTAAAACAAAAA-TTAAAAATACCTCAAC
* **
32067809 GTGTCTTG
63 GTGCCCCG
*
32067817 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT--AAAACAAAAATTAAAA
32067871 GGCTTAACTC
Statistics
Matches: 99, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
69 26 0.26
70 2 0.02
71 4 0.04
72 13 0.13
73 54 0.55
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
CCCCG
Found at i:32067908 original size:195 final size:195
Alignment explanation
Indices: 32067409--32068242 Score: 1568
Period size: 195 Copynumber: 4.3 Consensus size: 195
32067399 ACAGGAATTG
32067409 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACA
32067474 AAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACC
66 AAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACC
* *
32067539 TCGGCGTGCCCCGAGGTTCAACTCATTTCTCGCAATATGAGTTGA---TTTTTTTT-AAAATTTA
131 TCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTTA
*
32067600 AAAATACCTCCACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAAC
* *
32067665 ATAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACAGAAACTAAAAATAC
65 AAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATAC
32067730 CTCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTT
130 CTCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTT
32067795 A
195 A
32067796 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACA
*
32067861 AAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACA
66 AAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACC
32067926 TCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTTA
131 TCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTTA
32067991 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACA
*
32068056 AAAATTAAAAGGCTTAACTCACCTCTCACAATATGAGTCAATTTAAAACATAAACTAAAAATACC
66 AAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACC
32068121 TCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTTA
131 TCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTTA
32068186 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
32068243 CCTTGGAAAG
Statistics
Matches: 627, Mismatches: 11, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
191 52 0.08
192 118 0.19
195 397 0.63
196 60 0.10
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (195 bp):
AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACA
AAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACC
TCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTTAAAAATTTA
Found at i:32080029 original size:83 final size:84
Alignment explanation
Indices: 32079890--32080058 Score: 313
Period size: 83 Copynumber: 2.0 Consensus size: 84
32079880 TTAAACACAT
32079890 GTTGTCTTAATTTTCAAAAATGCGAACTCAATGTAAAGTTTAGTTATGATCCG-AAAAAAACGAG
1 GTTGTCTTAATTTTCAAAAATGCGAACTCAATGTAAAGTTTAGTTATGATCCGAAAAAAAACGAG
32079954 AAATTTTAGTTTATTCCGG
66 AAATTTTAGTTTATTCCGG
32079973 GTTGTCTTAATTTTCAAAAATGCGAACTCAATGTAAAGTTTAGTTATGATCCGAAAAAAAAAACG
1 GTTGTCTTAATTTTCAAAAATGCGAACTCAATGTAAAGTTTAGTTATGATCCG--AAAAAAAACG
32080038 AGAAATTTTAGTTTATTCCGG
64 AGAAATTTTAGTTTATTCCGG
32080059 TTTTTGAGAA
Statistics
Matches: 83, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
83 53 0.64
86 30 0.36
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (84 bp):
GTTGTCTTAATTTTCAAAAATGCGAACTCAATGTAAAGTTTAGTTATGATCCGAAAAAAAACGAG
AAATTTTAGTTTATTCCGG
Found at i:32081648 original size:518 final size:518
Alignment explanation
Indices: 32080214--32082262 Score: 3175
Period size: 517 Copynumber: 4.0 Consensus size: 518
32080204 NNNNNNNATC
* *
32080214 ATATACCAATCTATGATGATTAGTCCCCGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
1 ATATAGCAATCTGTGATGATTAGTCCCCGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
*
32080279 TGGAAGTTAT-TGCATTTTCGTGTTATATTTTAATTGTGTTTTTTGTATATATATTAAATATATA
66 TGGAAGTTATCTGCATTTTCGTATTATATTTTAATTGTG-TTTTTGTATATATATTAAATATATA
32080343 TAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATA
130 TAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATA
32080408 AATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGTATAT
195 AATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGTATAT
32080473 GATGATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATAAAA
260 GATGATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATAAAA
32080538 TTAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGA
325 TTAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGA
*
32080603 TAAGAATGGAAAGTGATTATGGTAATAAAAAGGAAAAATTGGGAATCGTGATTAGAGATTTATTC
390 TAAGAATGGAAAGTGATTATGGTAATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTC
32080668 GATGGTTGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATA
455 GATGGTTGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATA
* *
32080732 ATATAGCAATCAGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
1 ATATAGCAATCTGTGATGATTAGTCCCCGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
32080797 TGGAAGTT-TCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAATATATAT
66 TGGAAGTTATCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAATATATAT
32080861 AATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAA
131 AATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAA
32080926 ATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGTATATG
196 ATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGTATATG
32080991 ATGATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATAAAAT
261 ATGATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATAAAAT
*
32081056 TAAAGAGTTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGAT
326 TAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGAT
32081121 AAGAATGGAAAGTGATTATGGTAATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTCG
391 AAGAATGGAAAGTGATTATGGTAATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTCG
32081186 ATGGTTGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATA
456 ATGGTTGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATA
32081249 ATATAGCAATCTGTGATGATTAGTCCCCGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
1 ATATAGCAATCTGTGATGATTAGTCCCCGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
*
32081314 TGGAAGTTAT-TGCATTTTCGTGTTATATTTTAATTGTGTTTTTTGTATATATATTAAATATATA
66 TGGAAGTTATCTGCATTTTCGTATTATATTTTAATTGTG-TTTTTGTATATATATTAAATATATA
*
32081378 TAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAACTCGTAAAATAAGAAATACTTGATA
130 TAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATA
* * * * *
32081443 AATATTAAGAGATTCATGACACTGAATGGACGTGGGAATGGTATGTTGTTGGATAGAATGTATAT
195 AATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGTATAT
* *
32081508 GATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATACAA
260 GATGATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATAAAA
* * *
32081573 TTAAAGAGTTTGAAATGATACGAAATTGGAAAAAGAACCTGTATAAATTTAGCAAATGGTTTAGA
325 TTAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGA
* * * * *
32081638 TAAAAATGGAAAGTAATTATCGTTATAAAAAGG-AAAAATGGGAATCGTGATTAGAGATTAATTC
390 TAAGAATGGAAAGTGATTATGGTAATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTC
* *
32081702 GATGGTCGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATT
455 GATGGTTGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATA
* * *
32081766 ATATAGCAATCTGTGATGATTAGTCGCTGAAACTTTCTAGTTGTCATTTTCTAGGTAAGTTCATA
1 ATATAGCAATCTGTGATGATTAGTCCCCGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
32081831 TGGAAG-TATCTGCATTTTCGTATCT-TATTTTAATTGTGTTTTTGTATATATATTAAATATATA
66 TGGAAGTTATCTGCATTTTCGTAT-TATATTTTAATTGTGTTTTTGTATATATATTAAATATATA
*
32081894 TAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAACTACTTGATA
130 TAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATA
* ** * * * *** **
32081959 AATATGAATG-GA-T-GTGGGA--GCATGTATAT--G-AT-G-ATGTTG-CAAATTTAAAATGTA
195 AATATGAA-GAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGA--TAGCATGTA
* ** * ** *
32082013 TA-GA-GA-ATTG-TTATTCAAAA--TA-A-CTAA-TG----T----G-----------TGTATA
257 TATGATGATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATA
*
32082050 CAATTAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTT
322 AAATTAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTT
* * * * * *
32082115 AGATAAGAATGGGAAGTGATTCTGGTTATACAAAGG--ACAATAGGAATCGTGATTAGAGATTTA
387 AGATAAGAATGGAAAGTGATTATGGTAATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTA
* * * *
32082178 TTCGATGGTTGAGATCCAGCACAAATTGTGTATTCTCGACAGTTCGAGTAAGCAGTATCGGATCA
452 TTCGATGGTTGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCA
*
32082243 TT
517 TA
32082245 ATATAGCAATCTGTGATG
1 ATATAGCAATCTGTGATG
32082263 GTTGAGACCC
Statistics
Matches: 1451, Mismatches: 72, Indels: 55
0.92 0.05 0.03
Matches are distributed among these distances:
479 104 0.07
480 98 0.07
495 1 0.00
499 2 0.00
500 2 0.00
501 1 0.00
502 2 0.00
504 7 0.00
505 3 0.00
506 2 0.00
507 8 0.01
508 11 0.01
509 2 0.00
510 1 0.00
512 6 0.00
514 3 0.00
515 1 0.00
516 100 0.07
517 697 0.48
518 400 0.28
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (518 bp):
ATATAGCAATCTGTGATGATTAGTCCCCGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA
TGGAAGTTATCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAATATATAT
AATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAA
ATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGTATATG
ATGATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATAAAAT
TAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGAT
AAGAATGGAAAGTGATTATGGTAATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTCG
ATGGTTGAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATA
Found at i:32090999 original size:94 final size:94
Alignment explanation
Indices: 32090838--32091022 Score: 352
Period size: 94 Copynumber: 2.0 Consensus size: 94
32090828 GAGGAGCTAA
32090838 TCCAAGGGAAAAGGTCATGCATGATGTTCAGAGGACCCTTGTTTTATCGTTGACCACCCTAAATT
1 TCCAAGGGAAAAGGTCATGCATGATGTTCAGAGGACCCTTGTTTTATCGTTGACCACCCTAAATT
32090903 ATACAATAGCAATCAACAAGAGTTTCGAC
66 ATACAATAGCAATCAACAAGAGTTTCGAC
* *
32090932 TCCAAGGGAAAAGGTCATGCATGATGTTTAGAGGACCCTTGTTTTATCGTTGATCACCCTAAATT
1 TCCAAGGGAAAAGGTCATGCATGATGTTCAGAGGACCCTTGTTTTATCGTTGACCACCCTAAATT
32090997 ATACAATAGCAATCAACAAGAGTTTC
66 ATACAATAGCAATCAACAAGAGTTTC
32091023 AAACTAAAGA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (94 bp):
TCCAAGGGAAAAGGTCATGCATGATGTTCAGAGGACCCTTGTTTTATCGTTGACCACCCTAAATT
ATACAATAGCAATCAACAAGAGTTTCGAC
Found at i:32101724 original size:22 final size:22
Alignment explanation
Indices: 32101699--32101742 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
32101689 TTTCAATAGC
*
32101699 TCAACGTCGTCTTTGGCTATGT
1 TCAAAGTCGTCTTTGGCTATGT
32101721 TCAAAGTCGTCTTTGGCTATGT
1 TCAAAGTCGTCTTTGGCTATGT
32101743 ACAATCATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.20, G:0.23, T:0.41
Consensus pattern (22 bp):
TCAAAGTCGTCTTTGGCTATGT
Found at i:32104902 original size:27 final size:27
Alignment explanation
Indices: 32104857--32104908 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32104847 TAATGATTTT
*
32104857 TATTTTATTATTTTATTATAATTTTAA
1 TATTTTAATATTTTATTATAATTTTAA
*
32104884 TATTTTAAATATTTT-TTATACTTTT
1 TATTTT-AATATTTTATTATAATTTT
32104909 CATAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (27 bp):
TATTTTAATATTTTATTATAATTTTAA
Found at i:32105509 original size:18 final size:18
Alignment explanation
Indices: 32105486--32105588 Score: 54
Period size: 18 Copynumber: 5.6 Consensus size: 18
32105476 ACAAATTATT
32105486 AAATATTAAAAAAATTAA
1 AAATATTAAAAAAATTAA
* *
32105504 AAATATGAAAATTAATATAA
1 AAATATTAAAA-AAAT-TAA
* **
32105524 ACATA-T--AAAAATTCT
1 AAATATTAAAAAAATTAA
32105539 AAATATTATAAAAAATATAA
1 AAATATTA-AAAAAAT-TAA
*
32105559 AAGA-ATCT-AATAAATTAA
1 AA-ATAT-TAAAAAAATTAA
32105577 AAATATATAAAA
1 AAATAT-TAAAA
32105589 TTAATAAAAC
Statistics
Matches: 61, Mismatches: 13, Indels: 21
0.64 0.14 0.22
Matches are distributed among these distances:
15 5 0.08
16 4 0.07
17 3 0.05
18 18 0.30
19 17 0.28
20 12 0.20
21 2 0.03
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (18 bp):
AAATATTAAAAAAATTAA
Found at i:32105542 original size:27 final size:27
Alignment explanation
Indices: 32105495--32105590 Score: 74
Period size: 27 Copynumber: 3.6 Consensus size: 27
32105485 TAAATATTAA
**
32105495 AAAAAT-TAAAAATATGAAAATTAATAT
1 AAAAATATAAAAAT-TCTAAATTAATAT
* *
32105522 AAACATATAAAAATTCTAAA-TATTAT
1 AAAAATATAAAAATTCTAAATTAATAT
* *
32105548 AAAAAATATAAAAGAATCT-AATAAAT-T
1 -AAAAATATAAAA-ATTCTAAATTAATAT
32105575 AAAAATATATAAAATT
1 AAAAATATA-AAAATT
32105591 AATAAAACAT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
26 16 0.29
27 26 0.47
28 13 0.24
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (27 bp):
AAAAATATAAAAATTCTAAATTAATAT
Found at i:32105579 original size:28 final size:26
Alignment explanation
Indices: 32105485--32105588 Score: 86
Period size: 28 Copynumber: 3.8 Consensus size: 26
32105475 TACAAATTAT
* *
32105485 TAAATATTAAAAAAAT-T-AAAAATA
1 TAAAAATTAAAAAAATATAAAAAATC
* *
32105509 TGAAAATTAATATAAACATATAAAAATTC
1 TAAAAATTAA-A-AAA-ATATAAAAAATC
*
32105538 TAAATATTATAAAAAATATAAAAGAATC
1 TAAAAATTA-AAAAAATATAAAA-AATC
*
32105566 TAATAAATTAAAAATATATAAAA
1 TAA-AAATTAAAAAAATATAAAA
32105589 TTAATAAAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
24 8 0.13
25 1 0.02
26 3 0.05
27 10 0.16
28 22 0.35
29 18 0.29
30 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (26 bp):
TAAAAATTAAAAAAATATAAAAAATC
Found at i:32105611 original size:37 final size:38
Alignment explanation
Indices: 32105495--32105611 Score: 113
Period size: 35 Copynumber: 3.2 Consensus size: 38
32105485 TAAATATTAA
*
32105495 AAAAATTAAAAATAT-GAAAATTAATATAAACAT-A-T
1 AAAAATTAAAAATATATAAAATTAATATAAACATAATT
** *
32105530 AAAAATTCTAAATATTATAAAA--AATATAAA-AGAATCT
1 AAAAATTAAAAATA-TATAAAATTAATATAAACATAAT-T
32105567 AATAAATTAAAAATATATAAAATTAATA-AAACATAATT
1 AA-AAATTAAAAATATATAAAATTAATATAAACATAATT
*
32105605 TAAAATT
1 AAAAATT
32105612 TTATCAAGAC
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
34 1 0.02
35 21 0.32
36 1 0.02
37 19 0.29
38 15 0.23
39 8 0.12
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (38 bp):
AAAAATTAAAAATATATAAAATTAATATAAACATAATT
Found at i:32106154 original size:9 final size:9
Alignment explanation
Indices: 32106142--32106298 Score: 97
Period size: 9 Copynumber: 17.0 Consensus size: 9
32106132 GATCTTTTTT
32106142 TTTTTATAA
1 TTTTTATAA
*
32106151 TTTTCTA-AG
1 TTTT-TATAA
*
32106160 TTTATATCAA
1 TTTTTAT-AA
*
32106170 TTTTAATAAA
1 TTTTTAT-AA
*
32106180 TTTTT-TAT
1 TTTTTATAA
32106188 TTTTTAATAA
1 TTTTT-ATAA
*
32106198 TTTTTTTAA
1 TTTTTATAA
*
32106207 TTTTTTTAA
1 TTTTTATAA
*
32106216 TTTTTTTAA
1 TTTTTATAA
*
32106225 TTTTAAATAA
1 TTTT-TATAA
*
32106235 ATTTTATTAA
1 TTTTTA-TAA
*
32106245 -TTTTATAT
1 TTTTTATAA
32106253 TATTTTATAA
1 T-TTTTATAA
32106263 -TTTTATAA
1 TTTTTATAA
*
32106271 TATTTATAA
1 TTTTTATAA
*
32106280 TATTATATAA
1 T-TTTTATAA
*
32106290 TTTTAATAA
1 TTTTTATAA
32106299 GTTTATGTCA
Statistics
Matches: 116, Mismatches: 21, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
8 18 0.16
9 54 0.47
10 44 0.38
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:32106199 original size:18 final size:19
Alignment explanation
Indices: 32106170--32106272 Score: 81
Period size: 19 Copynumber: 5.4 Consensus size: 19
32106160 TTTATATCAA
32106170 TTTTAATAAATTTTTT-ATT
1 TTTTAAT-AATTTTTTAATT
32106189 TTTTAATAATTTTTTTAATT
1 TTTTAATAA-TTTTTTAATT
32106209 TTTT--TAATTTTTTTAA-T
1 TTTTAATAA-TTTTTTAATT
*
32106226 TTTAAATAAATTTTATTAATT
1 TTTTAAT-AATTTT-TTAATT
* * *
32106247 TTAT-ATTATTTTATAATT
1 TTTTAATAATTTTTTAATT
*
32106265 TTATAATA
1 TTTTAATA
32106273 TTTATAATAT
Statistics
Matches: 70, Mismatches: 6, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
17 4 0.06
18 23 0.33
19 25 0.36
20 15 0.21
21 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTAATAATTTTTTAATT
Found at i:32106338 original size:7 final size:7
Alignment explanation
Indices: 32106328--32106358 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
32106318 TATTTTATTT
32106328 TTTAATA
1 TTTAATA
32106335 TTTAATA
1 TTTAATA
32106342 TTTAATA
1 TTTAATA
32106349 TTTAATA
1 TTTAATA
32106356 TTT
1 TTT
32106359 TTTATAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTAATA
Found at i:32106707 original size:31 final size:32
Alignment explanation
Indices: 32106650--32106710 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
32106640 TAAAATGCAT
32106650 TTAAAATGAATCGGAACAAATGATTGTCTAAA
1 TTAAAATGAATCGGAACAAATGATTGTCTAAA
*
32106682 TTAAAATGAA-CAGG-ACAAATTATTGTCTA
1 TTAAAATGAATC-GGAACAAATGATTGTCTA
32106711 GATTCATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.30
Consensus pattern (32 bp):
TTAAAATGAATCGGAACAAATGATTGTCTAAA
Found at i:32107556 original size:17 final size:17
Alignment explanation
Indices: 32107534--32107568 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32107524 ACTCTAAAAA
32107534 TTTTAAAA-ATATATTTT
1 TTTTAAAATA-ATATTTT
32107551 TTTTAAAATAATATTTT
1 TTTTAAAATAATATTTT
32107568 T
1 T
32107569 AACACTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAAAATAATATTTT
Found at i:32107558 original size:16 final size:17
Alignment explanation
Indices: 32107534--32107568 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32107524 ACTCTAAAAA
32107534 TTTTAAAAAT-ATATTT
1 TTTTAAAAATAATATTT
*
32107550 TTTTTAAAATAATATTT
1 TTTTAAAAATAATATTT
32107567 TT
1 TT
32107569 AACACTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAAAAATAATATTT
Found at i:32124144 original size:18 final size:18
Alignment explanation
Indices: 32124121--32124155 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32124111 ACTCTTTTTT
32124121 TTTTCAATTTCCTCTTTC
1 TTTTCAATTTCCTCTTTC
* *
32124139 TTTTCATTTTTCTCTTT
1 TTTTCAATTTCCTCTTT
32124156 TCACAATTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTCAATTTCCTCTTTC
Found at i:32124157 original size:19 final size:19
Alignment explanation
Indices: 32124116--32124157 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
32124106 CTCGCACTCT
*
32124116 TTTTTTTTTCAATTTCCTC
1 TTTTCTTTTCAATTTCCTC
* *
32124135 -TTTCTTTTCATTTTTCTC
1 TTTTCTTTTCAATTTCCTC
32124153 TTTTC
1 TTTTC
32124158 ACAATTTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTCTTTTCAATTTCCTC
Found at i:32126535 original size:42 final size:43
Alignment explanation
Indices: 32126461--32126562 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
32126451 GTATCTTCAC
*
32126461 TCGTGTAACTCACTGAGTTACCCCACACGCCC-GTGTGCTAGG
1 TCGTGTAACTCACTGAGTTACCACACACGCCCGGTGTGCTAGG
* * *
32126503 TCGTGTAACTCTCT-ATGTTGCCACACATGCCCGTGTGTGCTAGG
1 TCGTGTAACTCACTGA-GTTACCACACACGCCCG-GTGTGCTAGG
* *
32126547 CCATGTAACTCACTGA
1 TCGTGTAACTCACTGA
32126563 CTTGAAACAC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
41 1 0.02
42 26 0.53
44 21 0.43
45 1 0.02
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (43 bp):
TCGTGTAACTCACTGAGTTACCACACACGCCCGGTGTGCTAGG
Found at i:32133548 original size:14 final size:14
Alignment explanation
Indices: 32133519--32133628 Score: 70
Period size: 14 Copynumber: 7.9 Consensus size: 14
32133509 AAAAATTCAC
*
32133519 AATCGAAATAAAAAA
1 AATCAAAAT-AAAAA
32133534 AATCAAAATAAAAA
1 AATCAAAATAAAAA
32133548 AATC--AATAAAAA
1 AATCAAAATAAAAA
*
32133560 AA-CAAAATCAAAA
1 AATCAAAATAAAAA
*
32133573 AATGAAAA-AACCAAA
1 AATCAAAATAA--AAA
*
32133588 AA--AGAAAGAAAAA
1 AATCA-AAATAAAAA
** *
32133601 AAGAAAAATCAAAA
1 AATCAAAATAAAAA
32133615 AATCAAAATTAAAA
1 AATCAAAA-TAAAA
32133629 TGAAAATGAC
Statistics
Matches: 76, Mismatches: 9, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
11 1 0.01
12 10 0.13
13 16 0.21
14 29 0.38
15 20 0.26
ACGTcount: A:0.76, C:0.08, G:0.05, T:0.11
Consensus pattern (14 bp):
AATCAAAATAAAAA
Found at i:32133555 original size:12 final size:13
Alignment explanation
Indices: 32133519--32133575 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 13
32133509 AAAAATTCAC
32133519 AATCGAAATAAAAAA
1 AATC-AAAT-AAAAA
32133534 AATCAAAATAAAAA
1 AATC-AAATAAAAA
32133548 AATC-AATAAAAA
1 AATCAAATAAAAA
*
32133560 AA-CAAAATCAAAA
1 AATC-AAATAAAAA
32133573 AAT
1 AAT
32133576 GAAAAAACCA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
11 1 0.03
12 10 0.27
13 9 0.24
14 9 0.24
15 8 0.22
ACGTcount: A:0.75, C:0.09, G:0.02, T:0.14
Consensus pattern (13 bp):
AATCAAATAAAAA
Found at i:32133558 original size:17 final size:16
Alignment explanation
Indices: 32133524--32133622 Score: 78
Period size: 17 Copynumber: 6.1 Consensus size: 16
32133514 TTCACAATCG
32133524 AAATAAAAAAAATC--A
1 AAAT-AAAAAAATCAAA
32133539 AAATAAAAAAATCAATA
1 AAATAAAAAAATCAA-A
32133556 AAA-AAACAAAATCAAA
1 AAATAAA-AAAATCAAA
* *
32133572 AAATGAAAAAACCAAA
1 AAATAAAAAAATCAAA
* **
32133588 AAAGAAAGAAAAAAAGAA
1 AAATAAA-AAAATCA-AA
*
32133606 AAATCAAAAAATCAAA
1 AAATAAAAAAATCAAA
32133622 A
1 A
32133623 TTAAAATGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
14 9 0.13
15 4 0.06
16 23 0.34
17 24 0.36
18 7 0.10
ACGTcount: A:0.79, C:0.08, G:0.04, T:0.09
Consensus pattern (16 bp):
AAATAAAAAAATCAAA
Found at i:32133590 original size:42 final size:42
Alignment explanation
Indices: 32133530--32133622 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
32133520 ATCGAAATAA
* ** * *
32133530 AAAAAATCAAAATA--AAAAAATCAATAAAAAAA-CAAAATC
1 AAAAAATCAAAAAACCAAAAAAGAAAGAAAAAAAGAAAAATC
*
32133569 AAAAAATGAAAAAACCAAAAAAGAAAGAAAAAAAGAAAAATC
1 AAAAAATCAAAAAACCAAAAAAGAAAGAAAAAAAGAAAAATC
32133611 AAAAAATCAAAA
1 AAAAAATCAAAA
32133623 TTAAAATGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 12 0.27
41 15 0.34
42 17 0.39
ACGTcount: A:0.78, C:0.09, G:0.04, T:0.09
Consensus pattern (42 bp):
AAAAAATCAAAAAACCAAAAAAGAAAGAAAAAAAGAAAAATC
Found at i:32135050 original size:44 final size:44
Alignment explanation
Indices: 32134855--32135182 Score: 119
Period size: 44 Copynumber: 7.5 Consensus size: 44
32134845 CCACAAGTCC
* * * *
32134855 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGGAAATTACAGCTCT
1 TATCTCCCTAAGT-AGTAGTGGAACAGGTTGGAAACTACAGATCT
* * * **
32134899 TATCTCCCTAAGCAGTAGTGGAGCA-GATGGAAGACGGC-GAATCT
1 TATCTCCCTAAGTAGTAGTGGAACAGGTTGGAA-ACTACAG-ATCT
* * * * * * *
32134943 TATCTTCCC-CAGGAGTAG-GGAAGCAGATT-TAAGCCACA-AGTCC
1 TATC-TCCCTAAGTAGTAGTGGAA-CAGGTTGGAAACTACAGA-TCT
* * * *
32134986 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGGAAATTACAGATCT
1 TATCTCCCTAAGT-AGTAGTGGAACAGGTTGGAAACTACAGATCT
* ** *
32135030 TATCTCCCTAAGTAGTAGTGGAGCAGG-TCCAAGACGAC-GAATCT
1 TATCTCCCTAAGTAGTAGTGGAACAGGTTGGAA-ACTACAG-ATCT
* * * * * * *
32135074 TATCTTCCC-CAGGAGTAG-GGAAGCAGATT-TAAGCCACA-AGTCC
1 TATC-TCCCTAAGTAGTAGTGGAA-CAGGTTGGAAACTACAGA-TCT
* * * *
32135117 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGGAAATTACAGATCT
1 TATCTCCCTAAGT-AGTAGTGGAACAGGTTGGAAACTACAGATCT
32135161 TATCTCCCTAAGTAGTAGTGGA
1 TATCTCCCTAAGTAGTAGTGGA
32135183 GTAGATCGAA
Statistics
Matches: 200, Mismatches: 57, Indels: 54
0.64 0.18 0.17
Matches are distributed among these distances:
42 12 0.06
43 50 0.25
44 121 0.61
45 17 0.09
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (44 bp):
TATCTCCCTAAGTAGTAGTGGAACAGGTTGGAAACTACAGATCT
Found at i:32135693 original size:131 final size:131
Alignment explanation
Indices: 32134836--32135670 Score: 1375
Period size: 131 Copynumber: 6.4 Consensus size: 131
32134826 TATTTGGGGA
* *
32134836 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGGAAATTACAGCTCTTA
1 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
* *
32134901 TCTCCCTAAGCAGTAGTGGAGCAGATGGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAG
66 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAAG
32134966 C
131 C
32134967 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
1 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
* * * * *
32135032 TCTCCCTAAGTAGTAGTGGAGCAGGTCCAAGACGACGAATCTTATCTTCCCCAGGAGTAGGGAAG
66 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAAG
32135097 C
131 C
32135098 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
1 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
* * * * *
32135163 TCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGGCAAATATTATCTTCCCTAAGAGTAGGGAAG
66 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAAG
32135228 C
131 C
* * *
32135229 AGATTTAAGCCACTAGTCCTATCTCCCTGGTCAGCGGTGGAATAGGTTGGAAATTACAGATATTA
1 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
*
32135294 TCCCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAAG
66 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAAG
32135359 C
131 C
32135360 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
1 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
* *
32135425 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCCCCAGGAGTAGGGAAG
66 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAAG
*
32135490 A
131 C
* * *
32135491 AAATTTAAGCCACAAGTCCTATCTCCCTGGTTAAG-AGTGGAATAGGTTGGAAATTACAAATCTT
1 AGATTTAAGCCACAAGTCCTATCTCCCTGG-TCAGCAGTGGAATAGGTTGGAAATTACAGATCTT
* * *
32135555 ATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAAATCATATCTTTCCCAGGAGTAGGGAA
65 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAA
32135620 GC
130 GC
* * * *
32135622 AGATTTAAGCCACTAGTCCTATCTCCCTAGTGAGCAGTGGAATAAGTTG
1 AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTG
32135671 AAGGTTGTAA
Statistics
Matches: 657, Mismatches: 45, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
130 3 0.00
131 651 0.99
132 3 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (131 bp):
AGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCCAGGAGTAGGGAAG
C
Found at i:32135785 original size:50 final size:50
Alignment explanation
Indices: 32135725--32136186 Score: 335
Period size: 50 Copynumber: 9.2 Consensus size: 50
32135715 AAAATTACAG
*
32135725 ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAGTGA
1 ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAGCGA
* * * ** ** * * *
32135775 ATCTTGCTTCCCCGAC-ATTATAGTTAAAAAGATTAAAGCTACAACAGCGT
1 ATCTTACTTCCCAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACAGCGA
* * *
32135825 ATCTTACTTCCCAGGCGGTGTAGTGGAACAGACTAAAGCCACAAC-GTCGA
1 ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAG-CGA
* * ** * * *
32135875 ATCTTGCTTCCTC-GAC-ATTGCAGTTAAAAAGATTAAAGCTACAACAGTGA
1 ATCTTACTTCC-CAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACAGCGA
* * * * *
32135925 ATCTTACTTCCCAAGCGGTGCGGTGGAACAGATTAAAGCCACAACGGCAA
1 ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAGCGA
* * ** * * **
32135975 ATCTTGCTTCCCCGGC-ATTGCAGTTAAAAAGATTAAAGCTACAACAATGA
1 ATCTTACTTCCCAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACAGCGA
* * **
32136025 ATCTTACTTCCCAGGCGGTGTAGTGGAACAGATTAAAGCCACAATGGCGA
1 ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAGCGA
* * * * * ** * * * * *
32136075 ATCATGCTTCCCCGAC-ATTGCAATTAAAAAAATTGAAGCTACAACGGCGA
1 ATCTTACTTCCCAGGCGA-TGCAGTGGAACAGATTAAAGCCACAACAGCGA
* *
32136125 ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAAC-GACAA
1 ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAG-CGA
*
32136175 ATCTTGCTTCCC
1 ATCTTACTTCCC
32136187 CGACATTGCA
Statistics
Matches: 302, Mismatches: 97, Indels: 26
0.71 0.23 0.06
Matches are distributed among these distances:
49 4 0.01
50 296 0.98
51 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (50 bp):
ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAGCGA
Found at i:32135900 original size:100 final size:100
Alignment explanation
Indices: 32135725--32136233 Score: 748
Period size: 100 Copynumber: 5.1 Consensus size: 100
32135715 AAAATTACAG
* * *
32135725 ATCTTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGA
1 ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGA
** *
32135790 CATTATAGTTAAAAAGATTAAAGCTACAACAGCGT
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
* * * *
32135825 ATCTTACTTCCCAGGCGGTGTAGTGGAACAGACTAAAGCCACAACGTCGAATCTTGCTTCCTCGA
1 ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGA
*
32135890 CATTGCAGTTAAAAAGATTAAAGCTACAACAGTGA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
* * * *
32135925 ATCTTACTTCCCAAGCGGTGCGGTGGAACAGATTAAAGCCACAACGGCAAATCTTGCTTCCCCGG
1 ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGA
**
32135990 CATTGCAGTTAAAAAGATTAAAGCTACAACAATGA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
* * *
32136025 ATCTTACTTCCCAGGCGGTGTAGTGGAACAGATTAAAGCCACAATGGCGAATCATGCTTCCCCGA
1 ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGA
* * * *
32136090 CATTGCAATTAAAAAAATTGAAGCTACAACGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
* *
32136125 ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGACAAATCTTGCTTCCCCGA
1 ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGA
* * **
32136190 CATTGCAGTTAATAAGATTGAAGCTACAAGGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
32136225 ATCTTACTT
1 ATCTTACTT
32136234 TCCAAAAGTT
Statistics
Matches: 367, Mismatches: 42, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 367 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (100 bp):
ATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGA
Found at i:32144342 original size:199 final size:199
Alignment explanation
Indices: 32143993--32144386 Score: 666
Period size: 199 Copynumber: 2.0 Consensus size: 199
32143983 ATCATGCACA
* *
32143993 GCTTAATAATATTTTTGTTTTATCTAAACTAATTTCTTATTTTATTTAAGCTTGATGTAAAATTC
1 GCTTAATAATATTTTTGTTTCATCTAAACTAATTTCTTATTTTATTTAAGCTTGATATAAAATTC
* *
32144058 GCACTAGGCATATTAGCTCACTCTTTTAGTTTTCTTAAAACTTTTCAGATAACACTCAATGATAG
66 ACACTAGGCATATTAGCTCACTCTTTTAGTTTTCTTAAAACTTTTCAGATAACACTCAAGGATAG
* *
32144123 GACTTGGATACAGAAATTGGAGGAGATTCTCAAATTTATTTTAAAATAAAGTATTTAAAACTCTT
131 AACTTGGATACAGAAATTGGAGGAGATTCTCAAATTCATTTTAAAATAAAGTATTTAAAACTCTT
32144188 ATGT
196 ATGT
32144192 GCTTAATAATATTTTTGTTTCATCTAAACTAATTTCTTATTTTATTTAAGCTTGATATAAAATTC
1 GCTTAATAATATTTTTGTTTCATCTAAACTAATTTCTTATTTTATTTAAGCTTGATATAAAATTC
*
32144257 ACACTGGGCATATTAGCTCACTGC-TTTAGTTTTCTTAAAACTTTTCAGATAACACTCAAGGATA
66 ACACTAGGCATATTAGCTCACT-CTTTTAGTTTTCTTAAAACTTTTCAGATAACACTCAAGGATA
* * *
32144321 GAACTTGGATGCA-ACAATTGGAGGAGATTCTCAGATTCATTTTAAAATAAAGTTTTTAAAACTC
130 GAACTTGGATACAGA-AATTGGAGGAGATTCTCAAATTCATTTTAAAATAAAGTATTTAAAACTC
32144385 TT
194 TT
32144387 TTGGGATTGT
Statistics
Matches: 183, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
198 1 0.01
199 181 0.99
200 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (199 bp):
GCTTAATAATATTTTTGTTTCATCTAAACTAATTTCTTATTTTATTTAAGCTTGATATAAAATTC
ACACTAGGCATATTAGCTCACTCTTTTAGTTTTCTTAAAACTTTTCAGATAACACTCAAGGATAG
AACTTGGATACAGAAATTGGAGGAGATTCTCAAATTCATTTTAAAATAAAGTATTTAAAACTCTT
ATGT
Found at i:32151493 original size:44 final size:44
Alignment explanation
Indices: 32151401--32151558 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 44
32151391 ACCGAGATTA
* * * *
32151401 CATGTAAGACCATATTTGAGA-TA-TGGCATCGATATGAGAATT
1 CATGTAAGACCATGTCTGGGACTATTGGCATCAATATGAGAATT
* *
32151443 CATGTAAGACCATGTCTGGGAC-ATTTGGCATCAATATGTGATTT
1 CATGTAAGACCATGTCTGGGACTA-TTGGCATCAATATGAGAATT
* * * * *
32151487 CGTGTAAGACCATGGCTGGG-CTATTGGCATCAATACGAGAGTA
1 CATGTAAGACCATGTCTGGGACTATTGGCATCAATATGAGAATT
*
32151530 CATGTAAGACCATATCTGGGA-TA-TGGCAT
1 CATGTAAGACCATGTCTGGGACTATTGGCAT
32151559 TGTTACGGTA
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.26
43 36 0.38
44 35 0.36
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
CATGTAAGACCATGTCTGGGACTATTGGCATCAATATGAGAATT
Found at i:32155615 original size:48 final size:48
Alignment explanation
Indices: 32155538--32155634 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
32155528 TATTTATTTG
* * *
32155538 AGATTCATTACAACATTAAAACGAGGAACAAACTTTGTAATATAAATT
1 AGATTAATTACAACATTAAAACAAAGAACAAACTTTGTAATATAAATT
* *
32155586 AGATTAATTGCAACATTAAAATAAAGAACAAACTTTGTAATATAAATT
1 AGATTAATTACAACATTAAAACAAAGAACAAACTTTGTAATATAAATT
32155634 A
1 A
32155635 CATACATTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (48 bp):
AGATTAATTACAACATTAAAACAAAGAACAAACTTTGTAATATAAATT
Found at i:32160693 original size:42 final size:43
Alignment explanation
Indices: 32160625--32160782 Score: 214
Period size: 43 Copynumber: 3.7 Consensus size: 43
32160615 TAATGTGAAA
*
32160625 AAACGCCGCTATAA-AACATGACCTTTAGCGGCGC-TTTATCCAC
1 AAACGCCGCTA-AAGAGCATGACCTTTAGCGGCGCTTTTAT-CAC
* * *
32160668 AAACGCCGCTAAAGA-CATGATCTTTAGCAGCACTTTTATCAC
1 AAACGCCGCTAAAGAGCATGACCTTTAGCGGCGCTTTTATCAC
* *
32160710 AAACGCCACTAAAGAGCATGACCTTTAGCGGAGCTTTTATCAC
1 AAACGCCGCTAAAGAGCATGACCTTTAGCGGCGCTTTTATCAC
*
32160753 AAATGCCGCTAAAGAGCATGACCTTTAGCG
1 AAACGCCGCTAAAGAGCATGACCTTTAGCG
32160783 CATGACCTTT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
42 34 0.33
43 68 0.67
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGAGCATGACCTTTAGCGGCGCTTTTATCAC
Found at i:32160787 original size:14 final size:14
Alignment explanation
Indices: 32160768--32160796 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32160758 CCGCTAAAGA
32160768 GCATGACCTTTAGC
1 GCATGACCTTTAGC
32160782 GCATGACCTTTAGC
1 GCATGACCTTTAGC
32160796 G
1 G
32160797 GCGCTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.28
Consensus pattern (14 bp):
GCATGACCTTTAGC
Found at i:32160836 original size:56 final size:57
Alignment explanation
Indices: 32160725--32160837 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 57
32160715 CCACTAAAGA
*
32160725 GCATGACCTTTAGCGGAGCTTTTATCACAAATGCCGCTAAAGAGCATGACCTTTAGC
1 GCATGACCTTTAGCGGAGCTTTTATCACAAACGCCGCTAAAGAGCATGACCTTTAGC
* *
32160782 GCATGACCTTTAGCGGCGC-TTTATCCACAAACGCCGCTAAAGA-CATGATCTTTAGC
1 GCATGACCTTTAGCGGAGCTTTTAT-CACAAACGCCGCTAAAGAGCATGACCTTTAGC
32160838 AACATTTTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
56 17 0.33
57 35 0.67
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (57 bp):
GCATGACCTTTAGCGGAGCTTTTATCACAAACGCCGCTAAAGAGCATGACCTTTAGC
Found at i:32160864 original size:99 final size:99
Alignment explanation
Indices: 32160683--32160870 Score: 247
Period size: 99 Copynumber: 1.9 Consensus size: 99
32160673 CCGCTAAAGA
* *
32160683 CATGATCTTTAGCAGCACTTTTATCACAAACGCCACTAAAGAGCATGACCTTTAGCGGAGCTTTT
1 CATGACCTTTAGCAGCACTTTTATCACAAACGCCACTAAAGAGCATGACCTTTAGC-GAACTTTT
* *
32160748 ATCACAAATGCCGCTAAAGAGCATGACCTTTAGCG
65 ATCACAAACGCCACTAAAGAGCATGACCTTTAGCG
* * * *
32160783 CATGACCTTTAGCGGCGC-TTTATCCACAAACGCCGCTAAAGA-CATGATCTTTAGC-AACATTT
1 CATGACCTTTAGCAGCACTTTTAT-CACAAACGCCACTAAAGAGCATGACCTTTAGCGAAC--TT
32160845 TTATCACAAACGCCACTAAAGAGCAT
63 TTATCACAAACGCCACTAAAGAGCAT
32160871 TTTATCACAA
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
97 2 0.03
99 43 0.56
100 32 0.42
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (99 bp):
CATGACCTTTAGCAGCACTTTTATCACAAACGCCACTAAAGAGCATGACCTTTAGCGAACTTTTA
TCACAAACGCCACTAAAGAGCATGACCTTTAGCG
Found at i:32160879 original size:27 final size:27
Alignment explanation
Indices: 32160843--32160897 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
32160833 TTAGCAACAT
32160843 TTTTATCACAAACGCCACTAAAGAGCA
1 TTTTATCACAAACGCCACTAAAGAGCA
* *
32160870 TTTTATCACAAATGCCGCTAAAGAGCA
1 TTTTATCACAAACGCCACTAAAGAGCA
32160897 T
1 T
32160898 AACCTTTAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (27 bp):
TTTTATCACAAACGCCACTAAAGAGCA
Found at i:32160917 original size:70 final size:70
Alignment explanation
Indices: 32160801--32160934 Score: 180
Period size: 70 Copynumber: 1.9 Consensus size: 70
32160791 TTAGCGGCGC
* * *
32160801 TTTATCCACAAACGCCGCTAAAGACATGATCTTTAGCAACATTTTTATCACAAACGCCACTAAAG
1 TTTATCCACAAACGCCGCTAAAGACATAACCTTTAGCAACACTTTTATCACAAACGCCACTAAAG
32160866 AGCAT
66 AGCAT
* ** * *
32160871 TTTAT-CACAAATGCCGCTAAAGAGCATAACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAA
1 TTTATCCACAAACGCCGCTAAAGA-CATAACCTTTAGCAACACTTTTATCACAAACGCCACTAAA
32160935 AGTACTGTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
69 17 0.31
70 38 0.69
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.25
Consensus pattern (70 bp):
TTTATCCACAAACGCCGCTAAAGACATAACCTTTAGCAACACTTTTATCACAAACGCCACTAAAG
AGCAT
Found at i:32164118 original size:47 final size:47
Alignment explanation
Indices: 32164049--32164139 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
32164039 GATTTAAACT
*
32164049 TATTTTCCATACACACTTCTTCTCTTTGCTTCAGTGAGCAAAAAGAA
1 TATTTTACATACACACTTCTTCTCTTTGCTTCAGTGAGCAAAAAGAA
*
32164096 TATTTTACATACACACTTCTTCTCTTTGCTTCAGTGAGCTAAAA
1 TATTTTACATACACACTTCTTCTCTTTGCTTCAGTGAGCAAAAA
32164140 CGAGCTAGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (47 bp):
TATTTTACATACACACTTCTTCTCTTTGCTTCAGTGAGCAAAAAGAA
Found at i:32166120 original size:14 final size:15
Alignment explanation
Indices: 32166043--32166170 Score: 76
Period size: 14 Copynumber: 8.9 Consensus size: 15
32166033 CTAACCCGAT
* * *
32166043 CCTTGAATCCCTAAA
1 CCTTAAATCCATAAC
*
32166058 CCTTAAATCCCTAAC
1 CCTTAAATCCATAAC
* * *
32166073 TCTT-AACCCCTAA-
1 CCTTAAATCCATAAC
*
32166086 CCTCT-AATCCATAAA
1 CCT-TAAATCCATAAC
32166101 CCTTAAATCCA-AAC
1 CCTTAAATCCATAAC
32166115 CCTTAAA-CCATAATC
1 CCTTAAATCCATAA-C
32166130 CC-T-AATCCATAATC
1 CCTTAAATCCATAA-C
*
32166144 CC-TAAATTCAT-AC
1 CCTTAAATCCATAAC
32166157 TCCTTAAATCCATA
1 -CCTTAAATCCATA
32166171 CTCCCTAAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
13 8 0.09
14 43 0.46
15 42 0.45
ACGTcount: A:0.37, C:0.34, G:0.01, T:0.28
Consensus pattern (15 bp):
CCTTAAATCCATAAC
Found at i:32166171 original size:15 final size:15
Alignment explanation
Indices: 32166091--32166181 Score: 91
Period size: 15 Copynumber: 6.3 Consensus size: 15
32166081 CCTAACCTCT
* *
32166091 AATCCATAAACCTTA
1 AATCCATAATCCCTA
32166106 AATCCA-AA-CCCTTA
1 AATCCATAATCCC-TA
32166120 AA-CCATAATCCCT-
1 AATCCATAATCCCTA
32166133 AATCCATAATCCCTA
1 AATCCATAATCCCTA
* * *
32166148 AATTCATACTCCTTA
1 AATCCATAATCCCTA
*
32166163 AATCCATACTCCCTA
1 AATCCATAATCCCTA
32166178 AATC
1 AATC
32166182 TTAAAATATG
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
13 7 0.11
14 20 0.31
15 38 0.58
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (15 bp):
AATCCATAATCCCTA
Found at i:32166434 original size:21 final size:22
Alignment explanation
Indices: 32166407--32166471 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
32166397 CCACTAAACA
*
32166407 CCTAACCCATAAACCTTAAATC
1 CCTAACCCATAAACCATAAATC
*
32166429 CC-AACCCTTAAACCAT-AATC
1 CCTAACCCATAAACCATAAATC
* *
32166449 CCTAACCCATAATCCCTAAATC
1 CCTAACCCATAAACCATAAATC
32166471 C
1 C
32166472 ATACTTCCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 6 0.17
21 23 0.64
22 7 0.19
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.22
Consensus pattern (22 bp):
CCTAACCCATAAACCATAAATC
Found at i:32166458 original size:14 final size:14
Alignment explanation
Indices: 32166441--32166467 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32166431 AACCCTTAAA
32166441 CCATAATCCCTAAC
1 CCATAATCCCTAAC
32166455 CCATAATCCCTAA
1 CCATAATCCCTAA
32166468 ATCCATACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (14 bp):
CCATAATCCCTAAC
Found at i:32166502 original size:304 final size:304
Alignment explanation
Indices: 32165950--32166541 Score: 901
Period size: 304 Copynumber: 1.9 Consensus size: 304
32165940 CAATATATTT
*
32165950 AATTTATTATTATCTCTTTTACAATTATATAAGAGCATATTTAAAATATAAATTAAAAAAATAAT
1 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
*
32166015 TAATCTAAACCCAAAACCCTAACCCGATCCTTGAATCCCTAAACCTTAAATCCCTAACTCTTAAC
66 TAATCTAAACCCAAAACCCTAACCCGATCCTTGAATCCCTAAACCCTAAATCCCTAACTCTTAAC
* * * * *
32166080 CCCTAACCTCTAATCCATAAACCTTAAATCCAAACCCTTAAACCATAATCCCTAATCCATAATCC
131 CCCTAACCTCTAATCCATAAACCCTAAACCCAAAACCTTAAACCACAATCCCTAAACCATAATCC
** * * *
32166145 CTAAATTCATACTCCTTAAATCCATACTCCCTAAATCTTAAAATATGAACTCCTAAACCGGCCTT
196 CTAAACCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCCTT
* *
32166210 AAATCTTAAATTAATTATATACCCTAAACTAAAAATCGTAAAGA
261 AAATCTTAAATAAATCATATACCCTAAACTAAAAATCGTAAAGA
32166254 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
1 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
* *
32166319 TAATCTAAACCCAAAACCCTAACTCGA-CCTCTGAATTCCTAAACCCTAAATCCCTAACTCTTAA
66 TAATCTAAACCCAAAACCCTAACCCGATCCT-TGAATCCCTAAACCCTAAATCCCTAACTCTTAA
*
32166383 CCCCTAACGTCTAA-CCACTAAACACCT-AACCCATAAACCTTAAATCC-CAA-CCCTTAAACCA
130 CCCCTAACCTCTAATCCA-TAAAC-CCTAAACCCA-AAACCTTAAA-CCACAATCCC-TAAACCA
* *
32166444 TAATCCCT-AACCCATAATCCCTAAATCCATACTTCCTACACCTTAAAATA-GTAACTCCTAAAC
190 TAATCCCTAAACCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATATG-AACTCCTAAAC
32166507 CGGCCTTAAATCTTAAATAAATCATATACCCTAAA
254 CGGCCTTAAATCTTAAATAAATCATATACCCTAAA
32166542 TCAAAAACCC
Statistics
Matches: 262, Mismatches: 19, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
303 7 0.03
304 226 0.86
305 27 0.10
306 2 0.01
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (304 bp):
AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
TAATCTAAACCCAAAACCCTAACCCGATCCTTGAATCCCTAAACCCTAAATCCCTAACTCTTAAC
CCCTAACCTCTAATCCATAAACCCTAAACCCAAAACCTTAAACCACAATCCCTAAACCATAATCC
CTAAACCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCCTT
AAATCTTAAATAAATCATATACCCTAAACTAAAAATCGTAAAGA
Found at i:32167203 original size:41 final size:41
Alignment explanation
Indices: 32166842--32167204 Score: 358
Period size: 41 Copynumber: 8.9 Consensus size: 41
32166832 TAAAATGTTT
* * * *
32166842 TTAGCGGCGCATTTTCAAAAACACCGCTAAAGCCTCC-AGTA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACC-CCGAGCA
*
32166883 TTAGCGGCGCTTTTTTAAAAACGCCGCTAAAACCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* *
32166924 TTAGCGGCGCTTTTTAAAAAACGCCGCT--AACACCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * * * * *
32166963 TTAGCGGCGCTTTATCAAAAATGTCGTTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
**
32167004 -TAGCGGCGAATTTTCAAAAACGCCGCTAAAACCCC-AGGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGA-GCA
** * * * *
32167044 TTAGCGGCGCTTTTGAAAAAATGTCGCTAAAACACCGAGAA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
** * * *
32167085 TTAGCGGCAATTTTCCAAAAACGCCACTAAAACCTCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * * * *
32167126 TTAGCGGTGCATTTTAAAAAACGCCACTAAAACCCCGAGTA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
* * * *
32167167 TTAGCGGCGCTTTTTCGAAAACACTGCTAAAGCCCCGA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGA
32167205 AAGGTAAGAA
Statistics
Matches: 260, Mismatches: 56, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
39 34 0.13
40 33 0.13
41 192 0.74
42 1 0.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
Found at i:32168639 original size:11 final size:11
Alignment explanation
Indices: 32168623--32168659 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
32168613 GGCCCGACCC
32168623 ATATTAAATAT
1 ATATTAAATAT
32168634 ATATT-AATAT
1 ATATTAAATAT
32168644 ATATTAAATAT
1 ATATTAAATAT
32168655 ATATT
1 ATATT
32168660 TGATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:32168705 original size:26 final size:25
Alignment explanation
Indices: 32168649--32168737 Score: 160
Period size: 26 Copynumber: 3.5 Consensus size: 25
32168639 AATATATATT
32168649 AAATATATATTTGATTAAAAATAAA
1 AAATATATATTTGATTAAAAATAAA
32168674 AAATATATATTTGATTAAAAATAAA
1 AAATATATATTTGATTAAAAATAAA
32168699 AATATATATATTTGATTAAAAATAAAA
1 AA-ATATATATTTGATTAAAAAT-AAA
32168726 AAATATATATTT
1 AAATATATATTT
32168738 AATATATAAT
Statistics
Matches: 62, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
25 27 0.44
26 30 0.48
27 5 0.08
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (25 bp):
AAATATATATTTGATTAAAAATAAA
Found at i:32169141 original size:13 final size:13
Alignment explanation
Indices: 32169123--32169147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32169113 ACCTATATTT
32169123 CTTACAAAAATAC
1 CTTACAAAAATAC
32169136 CTTACAAAAATA
1 CTTACAAAAATA
32169148 AATAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
CTTACAAAAATAC
Found at i:32169763 original size:32 final size:32
Alignment explanation
Indices: 32169721--32169812 Score: 105
Period size: 32 Copynumber: 2.9 Consensus size: 32
32169711 GGTTGACACC
* * *
32169721 GGTGTTGCCTATCAAGGAGGCTTCACTAGAGT
1 GGTGTCGCCTATCAAGGAGGCTTCACCAAAGT
*
32169753 GGTGTCGCCTAT-TAGAGAGGCTTCACCAAAGT
1 GGTGTCGCCTATCAAG-GAGGCTTCACCAAAGT
* **
32169785 GGTGTCGCCTAACAACAAGGCTTCACCA
1 GGTGTCGCCTATCAAGGAGGCTTCACCA
32169813 TAACAGACCC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
31 2 0.04
32 47 0.94
33 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (32 bp):
GGTGTCGCCTATCAAGGAGGCTTCACCAAAGT
Found at i:32171250 original size:25 final size:24
Alignment explanation
Indices: 32171217--32171270 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 24
32171207 GGGCGGATTT
32171217 TTATTTTATTTAATATTATTATAA
1 TTATTTTATTTAATATTATTATAA
32171241 TTATATTTATTTAATATTATTATAA
1 TTAT-TTTATTTAATATTATTATAA
*
32171266 ATATT
1 TTATT
32171271 GATATAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTATTTTATTTAATATTATTATAA
Found at i:32173462 original size:40 final size:40
Alignment explanation
Indices: 32173411--32173487 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
32173401 GATGTCAAGG
* * *
32173411 GACGTGTCAGCAAATAGCGTTCACGTCAGCGCGATTTTTT
1 GACGTGGCAGCAAATAGCGTCCACGTAAGCGCGATTTTTT
*
32173451 GACGTGGCAGCAAATCGCGTCCACGTAAGCGCGATTT
1 GACGTGGCAGCAAATAGCGTCCACGTAAGCGCGATTT
32173488 GTGTCCATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (40 bp):
GACGTGGCAGCAAATAGCGTCCACGTAAGCGCGATTTTTT
Found at i:32173699 original size:22 final size:23
Alignment explanation
Indices: 32173666--32173741 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
32173656 AATTAATCCT
* *
32173666 CTCTCAAATTTCATCTCATTTTC
1 CTCTCAAATTTCATCTCAATTTA
*
32173689 CTCT-AAATTTCCTCTCAATTTA
1 CTCTCAAATTTCATCTCAATTTA
* *
32173711 CTCTCAAATTCCTTC-CAAATTT-
1 CTCTCAAATTTCATCTC-AATTTA
32173733 CTCTCAAAT
1 CTCTCAAAT
32173742 CCATATATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 29 0.63
23 17 0.37
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.43
Consensus pattern (23 bp):
CTCTCAAATTTCATCTCAATTTA
Found at i:32173716 original size:33 final size:33
Alignment explanation
Indices: 32173665--32173739 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 33
32173655 AAATTAATCC
** *
32173665 TCTCTCAAATTTCATCTCATTTTCC-TCTAAATT
1 TCTCTC-AATTTCATCTCAAATTCCTTCCAAATT
32173698 TCCTCTCAATTT-ACTCTCAAATTCCTTCCAAATT
1 T-CTCTCAATTTCA-TCTCAAATTCCTTCCAAATT
32173732 TCTCTCAA
1 TCTCTCAA
32173740 ATCCATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 1 0.03
33 22 0.61
34 13 0.36
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (33 bp):
TCTCTCAATTTCATCTCAAATTCCTTCCAAATT
Found at i:32173740 original size:11 final size:11
Alignment explanation
Indices: 32173665--32173741 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 11
32173655 AAATTAATCC
32173665 TCTCTCAAATT
1 TCTCTCAAATT
*
32173676 TCATCTC-ATTT
1 TC-TCTCAAATT
32173687 TC-CTCTAAATT
1 TCTCTC-AAATT
32173698 TCCTCTC-AATT
1 T-CTCTCAAATT
32173709 TACTCTCAAATT
1 T-CTCTCAAATT
*
32173721 CCT-TCCAAATT
1 TCTCT-CAAATT
32173732 TCTCTCAAAT
1 TCTCTCAAAT
32173742 CCATATATAA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
9 3 0.06
10 1 0.02
11 36 0.68
12 10 0.19
13 3 0.06
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:32175634 original size:18 final size:18
Alignment explanation
Indices: 32175607--32175646 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32175597 CAGGTGCGTT
* *
32175607 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
32175625 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
32175643 TCCT
1 TCCT
32175647 TTTTCGAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:32175950 original size:21 final size:21
Alignment explanation
Indices: 32175902--32175950 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
32175892 AGATGTCCTA
32175902 CCGGAAGAACCAAAATCCCCG
1 CCGGAAGAACCAAAATCCCCG
* *
32175923 CCAGAAGAACCACAA-CCGCCG
1 CCGGAAGAACCAAAATCC-CCG
32175944 CCGGAAG
1 CCGGAAG
32175951 CTGGACAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.37, C:0.39, G:0.22, T:0.02
Consensus pattern (21 bp):
CCGGAAGAACCAAAATCCCCG
Found at i:32176203 original size:22 final size:22
Alignment explanation
Indices: 32176187--32176887 Score: 372
Period size: 22 Copynumber: 32.0 Consensus size: 22
32176177 TTTAATTGAC
32176187 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
32176209 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
32176230 AAACTCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
**
32176251 AAACCCTAAACTTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
32176273 AAACCCTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
32176295 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * * *
32176317 AAACCAT-AACCATTGACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
32176338 AAACACTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
****
32176360 AAACCCT-AACCC-TAACCCCT
1 AAACCCTAAACCCTTAACTTAA
* * *
32176380 AAACCCT-AATCCTTAAATAAA
1 AAACCCTAAACCCTTAACTTAA
*
32176401 AAACCCTAAACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
32176423 AAACACT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
32176444 AAACTCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* ***** * *
32176465 ATA---TAATTTGATAATTTTAC
1 AAACCCTAAACCCTTAA-CTTAA
* * **
32176485 TAACCATTAATACAATTATCACTTAA
1 AAACC-CTAA-ACCCTTA--ACTTAA
* *** * * *
32176511 TAATTTTACATTCACATAA-TTATTA
1 AAACCCTA-A-ACCCTTAACTTA--A
*** *** *
32176536 AAAATTTATAAATTTATAATTTATA
1 AAACCCTA-AACCCT-TAACTTA-A
*** * *
32176561 ATTAAATGTATAA--TTTAA-TTGA
1 A--AACCCTA-AACCCTTAACTTAA
* * *
32176583 CAA--TTAAACCCTTAACCTAAAA
1 AAACCCTAAACCCTTAA-CT-TAA
32176605 ACCCTAACCCTAAACCCTTAACTTAA
1 A----AACCCTAAACCCTTAACTTAA
* *
32176631 AAACCCT-AACCTTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
32176652 AAACCCTAAATCATTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
32176674 AAACCATAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
32176696 AAACCCT-AACCCGTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
32176717 AAACCTTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
32176739 AAATCATAAATCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
32176761 AAA-CCTTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
32176782 AAACCCTAAACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* **
32176804 AAACCAT-AACCCTTAAAATAA
1 AAACCCTAAACCCTTAACTTAA
* *
32176825 AAATCCTAAACCC--AACTTTA
1 AAACCCTAAACCCTTAACTTAA
* * *
32176845 AAACCGT-AACCCTTAAATAAA
1 AAACCCTAAACCCTTAACTTAA
32176866 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
32176887 A
1 A
32176888 TATAATTTGC
Statistics
Matches: 528, Mismatches: 114, Indels: 75
0.74 0.16 0.10
Matches are distributed among these distances:
17 2 0.00
18 3 0.01
19 13 0.02
20 30 0.06
21 201 0.38
22 203 0.38
23 5 0.01
24 7 0.01
25 21 0.04
26 20 0.04
27 12 0.02
28 11 0.02
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (22 bp):
AAACCCTAAACCCTTAACTTAA
Found at i:32176221 original size:21 final size:21
Alignment explanation
Indices: 32176187--32176887 Score: 326
Period size: 21 Copynumber: 32.0 Consensus size: 21
32176177 TTTAATTGAC
32176187 AAACCCTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
32176209 AAACCCTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
*
32176230 AAACTCTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
**
32176251 AAACCCTAAACTTTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
*
32176273 AAACCCTAAACCCTTAACCTAA
1 AAACCCT-AACCCTTAACTTAA
32176295 AAACCCTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
* * * *
32176317 AAACCATAACCATTGACTTTA
1 AAACCCTAACCCTTAACTTAA
*
32176338 AAACACTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
****
32176360 AAACCCTAACCC-TAACCCCT
1 AAACCCTAACCCTTAACTTAA
* * *
32176380 AAACCCTAATCCTTAAATAAA
1 AAACCCTAACCCTTAACTTAA
*
32176401 AAACCCTAAACCCTTAACTTTA
1 AAACCCT-AACCCTTAACTTAA
*
32176423 AAACACTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
*
32176444 AAACTCTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
* ** * *
32176465 ATA---TAA-TTTGATAATTTTAC
1 AAACCCTAACCCT--TAA-CTTAA
* * **
32176485 TAACCATTAATACAATTATCACTTAA
1 AAACC-CT-A-ACCCTTA--ACTTAA
* *** * * *
32176511 TAATTTTACATTCACATAATTATTAA
1 AAACCCTA-A--CCCTTAA--CTTAA
*** *** *
32176537 AAATTTATAAATTTATAATTTATA
1 AAA-CCCTAACCCT-TAACTTA-A
*** ** *
32176561 ATTAAATGTATA-ATTTAA-TTGA
1 A--AACCCTA-ACCCTTAACTTAA
* * *
32176583 CAA--TTAAACCCTTAACCTAAAA
1 AAACCCT-AACCCTTAA-CT-TAA
32176605 ACCCTAACCCTAAACCCTTAACTTAA
1 A----AACCCT-AACCCTTAACTTAA
* *
32176631 AAACCCTAACCTTTAAATTAA
1 AAACCCTAACCCTTAACTTAA
* *
32176652 AAACCCTAAATCATTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
* *
32176674 AAACCATAAACCCTTAACCTAA
1 AAACCCT-AACCCTTAACTTAA
*
32176696 AAACCCTAACCCGTAACTTAA
1 AAACCCTAACCCTTAACTTAA
*
32176717 AAACCTTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
* * *
32176739 AAATCATAAATCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
*
32176761 AAACCTTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
*
32176782 AAACCCTAAACCTTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
* **
32176804 AAACCATAACCCTTAAAATAA
1 AAACCCTAACCCTTAACTTAA
* *
32176825 AAATCCTAAACCC--AACTTTA
1 AAACCCT-AACCCTTAACTTAA
* * *
32176845 AAACCGTAACCCTTAAATAAA
1 AAACCCTAACCCTTAACTTAA
32176866 AAACCCTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
32176887 A
1 A
32176888 TATAATTTGC
Statistics
Matches: 525, Mismatches: 111, Indels: 87
0.73 0.15 0.12
Matches are distributed among these distances:
17 1 0.00
18 5 0.01
19 13 0.02
20 30 0.06
21 202 0.38
22 202 0.38
23 5 0.01
24 9 0.02
25 13 0.02
26 26 0.05
27 8 0.02
28 11 0.02
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
AAACCCTAACCCTTAACTTAA
Found at i:32176355 original size:43 final size:42
Alignment explanation
Indices: 32176187--32176887 Score: 326
Period size: 43 Copynumber: 16.0 Consensus size: 42
32176177 TTTAATTGAC
32176187 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
* **
32176230 AAACTCTAACCCTTAACTTAAAAACCCTAAACTTTTAACTTAA
1 AAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
*
32176273 AAACCCTAAACCCTTAACCTAAAAACCCTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
* * * * *
32176317 AAACCATAACCATTGACTTTAAAACACTAAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
**** * * *
32176360 AAACCCTAACCC-TAACCCCTAAACCCTAATCCTTAAATAAA
1 AAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
* *
32176401 AAACCCTAAACCCTTAACTTTAAAACACTAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
* * ** * *
32176444 AAACTCTAACCCTTAACTTAAATA---TAA-TTTGATAATTTTAC
1 AAACCCTAACCCTTAACTTAAAAACCCTAACCCT--TAA-CTTAA
* * ** * *** * * *
32176485 TAACCATTAATACAATTATCACTTAATAATTTTACATTCACATAATTATTAA
1 AAACC-CT-A-ACCCTTA--ACTTAAAAACCCTA-A--CCCTTAA--CTTAA
*** *** * *** ** *
32176537 AAATTTATAAATTTATAATTTATAATTAAATGTATA-ATTTAA-TTGA
1 AAA-CCCTAACCCT-TAACTTA-AA--AACCCTA-ACCCTTAACTTAA
* * *
32176583 CAA--TTAAACCCTTAACCTAAAAACCCTAACCCTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAA-CT-TAAA----AACCCT-AACCCTTAACTTAA
* * * *
32176631 AAACCCTAACCTTTAAATTAAAAACCCTAAATCATTAACTTAA
1 AAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
* * *
32176674 AAACCATAAACCCTTAACCTAAAAACCCTAACCCGTAACTTAA
1 AAACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
* * * *
32176717 AAACCTTAAACCCTTAACTTAAAAATCATAAATCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
* *
32176761 AAACCTTAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAA
1 AAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
* ** * *
32176804 AAACCATAACCCTTAAAATAAAAATCCTAAACCC--AACTTTA
1 AAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
* * *
32176845 AAACCGTAACCCTTAAATAAAAAACCCTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
32176887 A
1 A
32176888 TATAATTTGC
Statistics
Matches: 504, Mismatches: 115, Indels: 79
0.72 0.16 0.11
Matches are distributed among these distances:
38 1 0.00
39 3 0.01
40 8 0.02
41 54 0.11
42 58 0.12
43 219 0.43
44 87 0.17
45 1 0.00
46 17 0.03
47 8 0.02
48 6 0.01
49 18 0.04
50 5 0.01
51 6 0.01
52 13 0.03
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (42 bp):
AAACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
Found at i:32176631 original size:28 final size:28
Alignment explanation
Indices: 32176587--32176641 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
32176577 AATTGACAAT
32176587 TAAACCCTTAACCTAAAAACCCTAACCC
1 TAAACCCTTAACCTAAAAACCCTAACCC
*
32176615 TAAACCCTTAACTTAAAAACCCTAACC
1 TAAACCCTTAACCTAAAAACCCTAACC
32176642 TTTAAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (28 bp):
TAAACCCTTAACCTAAAAACCCTAACCC
Found at i:32176640 original size:14 final size:15
Alignment explanation
Indices: 32176588--32176642 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
32176578 ATTGACAATT
32176588 AAACCCTTAACCTAA
1 AAACCCTTAACCTAA
32176603 AAACCC-TAACCCT--
1 AAACCCTTAA-CCTAA
*
32176616 AAACCCTTAACTTAA
1 AAACCCTTAACCTAA
32176631 AAACCC-TAACCT
1 AAACCCTTAACCT
32176643 TTAAATTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 8 0.24
14 11 0.32
15 15 0.44
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (15 bp):
AAACCCTTAACCTAA
Found at i:32176684 original size:65 final size:65
Alignment explanation
Indices: 32176610--32176887 Score: 323
Period size: 65 Copynumber: 4.3 Consensus size: 65
32176600 TAAAAACCCT
* * * *
32176610 AACCCTAAACCCTTAACTTAAAAACCCTAACCTTTAAATTAAAAACCCTAAATCATTAACTTAAA
1 AACCATAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCATTAACTTAAA
* * * *
32176675 AACCATAAACCCTTAACCTAAAAACCCTAACCCGTAACTTAAAAACCTTAAACCCTTAACTTAAA
1 AACCATAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCATTAACTTAAA
* * * *
32176740 AATCATAAATCCTTAACTTAAAAACCTTAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAA
1 AACCATAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCATTAACTTAAA
** * * * * * *
32176805 AACCAT-AACCCTTAAAATAAAAATCCTAAACCC--AACTTTAAAACCGT-AACCCTTAAATAAA
1 AACCATAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCATTAACTTAA
32176866 A
65 A
*
32176867 AACCCT-AACCCTTAACTTAAA
1 AACCATAAACCCTTAACTTAAA
32176888 TATAATTTGC
Statistics
Matches: 183, Mismatches: 29, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
62 30 0.16
63 12 0.07
64 16 0.09
65 125 0.68
ACGTcount: A:0.47, C:0.27, G:0.01, T:0.24
Consensus pattern (65 bp):
AACCATAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCATTAACTTAAA
Found at i:32176955 original size:53 final size:53
Alignment explanation
Indices: 32176887--32176990 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
32176877 CTTAACTTAA
* * *
32176887 ATATAATTTGCTAATTTTACTAACCATTAATACAATTATCAGTTAATAATTTG
1 ATATAATTTGATAATTTTACTAACAATTAATACAATTATCAATTAATAATTTG
32176940 ATATAATTTGATAATTTTACTAACAATTAATACAATTATCAATTAATAATT
1 ATATAATTTGATAATTTTACTAACAATTAATACAATTATCAATTAATAATT
32176991 GAAAAAATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (53 bp):
ATATAATTTGATAATTTTACTAACAATTAATACAATTATCAATTAATAATTTG
Found at i:32180249 original size:126 final size:125
Alignment explanation
Indices: 32179998--32180423 Score: 543
Period size: 126 Copynumber: 3.4 Consensus size: 125
32179988 CCCAAACATG
* * *
32179998 CTACTGTAGCAAAAGCGTGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATTCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCCTG
* * * * * *
32180062 GTAGAAG-TGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGAC
65 CTTGCAGCTTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* *
32180122 CTACTGTAACAAAAGCGCGTCCAC-TAGGGCACAATTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGT-GGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
32180186 CTTGCAGCTTTATTTTATACTATCTGCTCCGAAACGTCAACTCGAAATTATTTTTTCAAGAC
65 CTTGCAGC-TTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * *
32180248 CTACTGTAGTAAAAGTGCGTCCACGTGGACACGATTTCACAAATTCTTCTCAAATAGAATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
32180313 TTGCAGCGTTGTTTTATACTATTTACTCAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
66 TTGCAGC-TTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * * * * *
32180374 CTACTGTAGCAAAAGTGCGTTCACGTGAGCGCGACTTCAAAAATCCTTCT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCT
32180424 GATAAATCAT
Statistics
Matches: 262, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
123 3 0.01
124 58 0.22
126 200 0.76
127 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TTGCAGCTTATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:32181451 original size:20 final size:20
Alignment explanation
Indices: 32181417--32181458 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
32181407 TACTATTTAA
** *
32181417 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
32181437 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
32181457 AT
1 AT
32181459 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:32181659 original size:13 final size:13
Alignment explanation
Indices: 32181641--32181665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32181631 ATAAAGTATT
32181641 TTTGTAGAAATTC
1 TTTGTAGAAATTC
32181654 TTTGTAGAAATT
1 TTTGTAGAAATT
32181666 GAGTTTCTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
TTTGTAGAAATTC
Found at i:32193708 original size:16 final size:16
Alignment explanation
Indices: 32193687--32193720 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32193677 ATTACAGATT
*
32193687 TTAATTTTTATTCTAA
1 TTAATTTTAATTCTAA
*
32193703 TTAATTTTAATTTTAA
1 TTAATTTTAATTCTAA
32193719 TT
1 TT
32193721 TTAATTTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAATTTTAATTCTAA
Found at i:32193710 original size:22 final size:22
Alignment explanation
Indices: 32193684--32193726 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32193674 AAAATTACAG
*
32193684 ATTTTAATTTTTATTCTAATTA
1 ATTTTAATTTTAATTCTAATTA
*
32193706 ATTTTAATTTTAATTTTAATT
1 ATTTTAATTTTAATTCTAATT
32193727 TTCTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (22 bp):
ATTTTAATTTTAATTCTAATTA
Found at i:32193745 original size:7 final size:6
Alignment explanation
Indices: 32193684--32193728 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
32193674 AAAATTACAG
* *
32193684 ATTTTA ATTTTT ATTCTA A--TTA ATTTTA ATTTTA ATTTTA ATTTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
32193729 CTATTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 3 0.09
6 30 0.91
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (6 bp):
ATTTTA
Done.