Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 108 of 126
Found at i:32911919 original size:45 final size:46
Alignment explanation
Indices: 32911854--32912021 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 46
32911844 GATTGGAGAG
* * * * * *
32911854 TGCCATAGTGTCTTTTAACCATGTTCTTATTTATTCTT-GTCTTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
* * *
32911899 TGCCATAGTGTCTTTCAACCACGGTCTTATTCATTTTTCATCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
*
32911945 TG-CACTAGTGTCTTTCAACCATGGTGTTATTCATTTTTCGTCATGT
1 TGCCA-TAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
* * * *
32911991 TGTCATAGTGTCTTTCAGCTATGGTCATATT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATT
32912022 TCTTTGATAC
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
45 35 0.34
46 67 0.64
47 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
Found at i:32912138 original size:45 final size:45
Alignment explanation
Indices: 32911854--32912159 Score: 157
Period size: 45 Copynumber: 6.8 Consensus size: 45
32911844 GATTGGAGAG
* * * *
32911854 TGCCATAGTGTCTTTTAACCATGTTCTTATTTATTCTTGTC-T-TGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATT-TT-TCGTATGA
* * * * *
32911899 TGCCATAGTGTCTTTCAACCACGGTCTTATTCATTTTTCATCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGT-ATGA
* * *
32911945 TG-CACTAGTGTCTTTCAACCATGGTGTTATTCATTTTTCGTCATGT
1 TGCCA-TAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGT-ATGA
* * * *
32911991 TGTCATAGTGTCTTTCAGCTATGGTC--A-T-ATTTCTTTGATACCTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTT-TTCG-TA--TGA
* * * * * *
32912036 TGCCATAGCGTCTTCCAGCTATGGTCTTACTCGA----TAGAATTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTC-ATTTTTCGTA-TGA
*** * * * *
32912079 TGCCATAACATCTTTCAGCCATGGTGTTACTCATTTTTGGTATGG
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGTATGA
* *
32912124 TGCCATAGTGTCTTTCAACTATGGTCTTAATCATTT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTT
32912160 CCTTCAAGCC
Statistics
Matches: 208, Mismatches: 35, Indels: 36
0.75 0.13 0.13
Matches are distributed among these distances:
42 5 0.02
43 37 0.18
44 6 0.03
45 91 0.44
46 64 0.31
47 3 0.01
48 1 0.00
50 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGTATGA
Found at i:32927209 original size:17 final size:18
Alignment explanation
Indices: 32927187--32927230 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
32927177 CTAATGAATG
*
32927187 ACAAATAATCAATA-AAT
1 ACAAATAAGCAATACAAT
32927204 ACAAATAAGCAATACAAT
1 ACAAATAAGCAATACAAT
*
32927222 ACACATAAG
1 ACAAATAAG
32927231 AGAAATAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.61, C:0.16, G:0.05, T:0.18
Consensus pattern (18 bp):
ACAAATAAGCAATACAAT
Found at i:32927912 original size:23 final size:23
Alignment explanation
Indices: 32927886--32928001 Score: 87
Period size: 23 Copynumber: 5.0 Consensus size: 23
32927876 TAAATGTAAG
*
32927886 TAATGTTAATGATAAAATTAAAA
1 TAATATTAATGATAAAATTAAAA
*
32927909 TAATAATACATTG-T-AAATTAAAA
1 TAATATTA-A-TGATAAAATTAAAA
* *
32927932 TAATATTGATGATAAATTTAAAA
1 TAATATTAATGATAAAATTAAAA
* *
32927955 GTAATATTAA-GCTTAAACATAAAAA
1 -TAATATTAATG-ATAAA-ATTAAAA
*
32927980 TAATATTAGAT-TTAAAATTAAA
1 TAATATTA-ATGATAAAATTAAA
32928002 TATATAATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 18
0.73 0.10 0.18
Matches are distributed among these distances:
21 2 0.03
22 2 0.03
23 35 0.47
24 27 0.36
25 8 0.11
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (23 bp):
TAATATTAATGATAAAATTAAAA
Found at i:32928001 original size:24 final size:24
Alignment explanation
Indices: 32927898--32928001 Score: 76
Period size: 24 Copynumber: 4.4 Consensus size: 24
32927888 ATGTTAATGA
* *
32927898 TAAAATT-AAAATAATAATACATT
1 TAAAATTAAAAATAATATTAGATT
*
32927921 GT-AAATT-AAAATAATATT-GATGA
1 -TAAAATTAAAAATAATATTAGAT-T
* * *
32927944 TAAATTTAAAAGTAATATTA-AGCT
1 TAAAATTAAAAATAATATTAGA-TT
32927968 TAAACA-TAAAAATAATATTAGATT
1 TAAA-ATTAAAAATAATATTAGATT
32927992 TAAAATTAAA
1 TAAAATTAAA
32928002 TATATAATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
22 3 0.05
23 20 0.32
24 38 0.61
25 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.35
Consensus pattern (24 bp):
TAAAATTAAAAATAATATTAGATT
Found at i:32929131 original size:18 final size:19
Alignment explanation
Indices: 32929108--32929151 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
32929098 ATTGGGCTTA
*
32929108 TTTATTTGTAATTGGA-TT
1 TTTATTTGTAAATGGACTT
32929126 TTTA-TTGTAAATGGACTT
1 TTTATTTGTAAATGGACTT
32929144 TGTTATTT
1 T-TTATTT
32929152 TTGGACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.45
18 7 0.32
19 3 0.14
20 2 0.09
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.59
Consensus pattern (19 bp):
TTTATTTGTAAATGGACTT
Found at i:32941065 original size:18 final size:17
Alignment explanation
Indices: 32941038--32941072 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32941028 TCAAATAATC
32941038 AATAAATACAAATAAGA
1 AATAAATACAAATAAGA
*
32941055 AATAGAATACACATAAGA
1 AATA-AATACAAATAAGA
32941073 GCAATAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.66, C:0.09, G:0.09, T:0.17
Consensus pattern (17 bp):
AATAAATACAAATAAGA
Found at i:32941792 original size:22 final size:24
Alignment explanation
Indices: 32941705--32941798 Score: 72
Period size: 23 Copynumber: 4.0 Consensus size: 24
32941695 TTACATAACA
* *
32941705 AATACATGATAAATGT-AAGTAAT
1 AATACATGATAAATTTAAAATAAT
**
32941728 GTTA-ATGATAAATTTAAAATAAT
1 AATACATGATAAATTTAAAATAAT
*
32941751 AATACATTG-TAAA-TTAAAAAAAT
1 AATACA-TGATAAATTTAAAATAAT
**
32941774 -ATTGATGATAAATTTAAAAGTAAT
1 AATACATGATAAATTTAAAA-TAAT
32941798 A
1 A
32941799 TTAAGCTTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
21 2 0.04
22 17 0.31
23 25 0.46
24 8 0.15
25 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (24 bp):
AATACATGATAAATTTAAAATAAT
Found at i:32941810 original size:46 final size:48
Alignment explanation
Indices: 32941732--32941824 Score: 122
Period size: 46 Copynumber: 2.0 Consensus size: 48
32941722 AGTAATGTTA
*
32941732 ATGATAAATTTAAAATAATAATACATTGTAAAT-TAAAAA-AATATTG
1 ATGATAAATTTAAAATAATAATACACTGTAAATATAAAAATAATATTG
*
32941778 ATGATAAATTTAAAAGTAATATTA-AGCT-TAAATATAAAAATAATATT
1 ATGATAAATTTAAAA-TAATAATACA-CTGTAAATATAAAAATAATATT
32941825 AGATTTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
46 21 0.51
47 14 0.34
48 6 0.15
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (48 bp):
ATGATAAATTTAAAATAATAATACACTGTAAATATAAAAATAATATTG
Found at i:32941832 original size:24 final size:23
Alignment explanation
Indices: 32941736--32941839 Score: 79
Period size: 24 Copynumber: 4.4 Consensus size: 23
32941726 ATGTTAATGA
* * *
32941736 TAAATTTAAAATAATAATACATT
1 TAAATTAAAAATAATATTAGATT
*
32941759 GTAAATTAAAAA-AATATT-GATGA
1 -TAAATTAAAAATAATATTAGAT-T
* *
32941782 TAAATTTAAAAGTAATATTA-AGCT
1 TAAA-TTAAAAATAATATTAGA-TT
32941806 TAAATATAAAAATAATATTAGATT
1 TAAAT-TAAAAATAATATTAGATT
32941830 TAAAATTAAA
1 T-AAATTAAA
32941840 TATATAATTT
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
22 6 0.10
23 12 0.19
24 40 0.63
25 5 0.08
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.36
Consensus pattern (23 bp):
TAAATTAAAAATAATATTAGATT
Found at i:32942913 original size:17 final size:17
Alignment explanation
Indices: 32942891--32942926 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32942881 CTGTTAGGTT
32942891 TTAGGCTAGGCTTTGTA
1 TTAGGCTAGGCTTTGTA
* *
32942908 TTAGGCTTGGGTTTGTA
1 TTAGGCTAGGCTTTGTA
32942925 TT
1 TT
32942927 GGGATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.08, G:0.31, T:0.47
Consensus pattern (17 bp):
TTAGGCTAGGCTTTGTA
Found at i:32942943 original size:19 final size:18
Alignment explanation
Indices: 32942919--32942966 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
32942909 TAGGCTTGGG
32942919 TTTGT-ATTGGGATTATTTA
1 TTTGTAATT-GGATT-TTTA
32942938 TTTGTAATTGGATTTTTA
1 TTTGTAATTGGATTTTTA
*
32942956 -TTGTAAATGGA
1 TTTGTAATTGGA
32942967 CATTATTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 10 0.37
18 4 0.15
19 10 0.37
20 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (18 bp):
TTTGTAATTGGATTTTTA
Found at i:32944210 original size:4 final size:4
Alignment explanation
Indices: 32944201--32944231 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
32944191 ACTCATTTTG
32944201 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
32944232 TTCGAACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:32950834 original size:50 final size:50
Alignment explanation
Indices: 32950780--32950881 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
32950770 TTCATTAGTT
* *
32950780 CTCCTAATTTTTGTCGGAGGCATTTTCGATAAGATTTCAATCTAGAGAGA
1 CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
32950830 CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
1 CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
32950880 CT
1 CT
32950882 AACTTAATAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (50 bp):
CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
Found at i:32955599 original size:24 final size:23
Alignment explanation
Indices: 32955572--32955620 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
32955562 TACCGATTAT
*
32955572 AGCTCGTATGAGCATACTATTTAC
1 AGCTCGTATGAGCATAC-ATGTAC
* *
32955596 AGCTTGTGTGAGCATACATGTAC
1 AGCTCGTATGAGCATACATGTAC
32955619 AG
1 AG
32955621 GATTTGACGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (23 bp):
AGCTCGTATGAGCATACATGTAC
Found at i:32957210 original size:22 final size:23
Alignment explanation
Indices: 32957167--32957210 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
32957157 TATGTATGAT
* * *
32957167 TTGATTTGATTTTAATATGTTTA
1 TTGATATGATTTTAAAAAGTTTA
32957190 TTGATATGA-TTTAAAAAGTTT
1 TTGATATGATTTTAAAAAGTTT
32957211 GAAATTTAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (23 bp):
TTGATATGATTTTAAAAAGTTTA
Found at i:32964006 original size:27 final size:26
Alignment explanation
Indices: 32963976--32964034 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
32963966 TTTTGCAATG
**
32963976 GTAAAACCGTCAAATATTTTATCGAGA
1 GTAAAACCAACAAATA-TTTATCGAGA
* * *
32964003 GTAAAATCAACAAATATTTATCGGGG
1 GTAAAACCAACAAATATTTATCGAGA
32964029 GTAAAA
1 GTAAAA
32964035 TTTGGATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (26 bp):
GTAAAACCAACAAATATTTATCGAGA
Found at i:32968693 original size:40 final size:40
Alignment explanation
Indices: 32968638--32968720 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
32968628 AAAAGATAAG
**
32968638 AAAGATTAGCCTAGAGACAAGCCATGAAAATGGACCTTGA
1 AAAGATTAGCCTAGAGACAAGCCACAAAAATGGACCTTGA
*
32968678 AAAGATTAGCCTAGAGACAAGCGACAAAAATGGACCTTGA
1 AAAGATTAGCCTAGAGACAAGCCACAAAAATGGACCTTGA
32968718 AAA
1 AAA
32968721 TCAAAATGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.16
Consensus pattern (40 bp):
AAAGATTAGCCTAGAGACAAGCCACAAAAATGGACCTTGA
Found at i:32969031 original size:27 final size:27
Alignment explanation
Indices: 32968993--32969045 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
32968983 AAGATAGCCA
*
32968993 GTGTACTTGAAGACTCATTGAGGTTGG
1 GTGTACTTGAAGACGCATTGAGGTTGG
32969020 GTGTACTTGAAGACGCATTGAGGTTG
1 GTGTACTTGAAGACGCATTGAGGTTG
32969046 AAGTTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.11, G:0.34, T:0.32
Consensus pattern (27 bp):
GTGTACTTGAAGACGCATTGAGGTTGG
Found at i:32975078 original size:30 final size:30
Alignment explanation
Indices: 32975026--32975085 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32975016 TCATGATTGG
* * *
32975026 TTTTTTTTTTTATTTTTAGTTAGTTGTTTA
1 TTTTTTTGTTTATTTATAGTTAGTTATTTA
32975056 TTTTTCTTGTTTATTTAT-GTTAGTTATTTA
1 TTTTT-TTGTTTATTTATAGTTAGTTATTTA
32975086 ATTTCTATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.15, C:0.02, G:0.10, T:0.73
Consensus pattern (30 bp):
TTTTTTTGTTTATTTATAGTTAGTTATTTA
Found at i:32976814 original size:49 final size:49
Alignment explanation
Indices: 32976757--32976904 Score: 287
Period size: 49 Copynumber: 3.0 Consensus size: 49
32976747 AGACAGTCAG
32976757 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
1 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
32976806 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
1 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
*
32976855 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGTCATTTTC
1 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
32976904 G
1 G
32976905 CATGGCTTAT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 98 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (49 bp):
GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
Found at i:32977807 original size:47 final size:47
Alignment explanation
Indices: 32977687--32977807 Score: 179
Period size: 47 Copynumber: 2.6 Consensus size: 47
32977677 CCCTTCGGGA
* * * * *
32977687 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
* *
32977734 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
32977781 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32977808 TATTCAAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
Found at i:32984654 original size:40 final size:40
Alignment explanation
Indices: 32984623--32984751 Score: 197
Period size: 40 Copynumber: 3.2 Consensus size: 40
32984613 GGACTAAGAT
32984623 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
32984663 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* *
32984703 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
32984743 CCGAAGGCA
1 CCGAAGGCA
32984752 CTTGAACGAG
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 79 0.99
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:32984710 original size:80 final size:81
Alignment explanation
Indices: 32984577--32984750 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 81
32984567 CTGTCTGGGC
* *
32984577 TAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGA
*
32984641 GTTATT-AATTCCGGGT
66 GTT-TTAAAATCCGGGT
**
32984657 TAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGCATTCGTG
1 TAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGCATTCGTG
32984718 CGAGTTTTAAAATCCGGGT
63 CGAGTTTTAAAATCCGGGT
32984737 TAAGTCCCGAAGGC
1 TAAGTCCCGAAGGC
32984751 ACTTGAACGA
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
79 4 0.05
80 71 0.85
81 9 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGA
GTTTTAAAATCCGGGT
Found at i:32984774 original size:80 final size:79
Alignment explanation
Indices: 32984604--32984788 Score: 200
Period size: 80 Copynumber: 2.3 Consensus size: 79
32984594 GTGCTAAGTG
** * *
32984604 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAG
1 ACTATATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAG
**
32984669 GCCTTTGTGCGAGAT
65 GCCTTTGAACGAGAT
32984684 ACTA-ATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGA
1 ACTATA-TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGTCCCGA
32984747 AGGCAC-TTGAACGAGGA-
63 AGGC-CTTTGAACGA-GAT
* *
32984764 GCTATATCC-GGTTAAATTCCGAAGG
1 ACTATATCCGGGTT-AAGTCCGAAGG
32984789 TACGTGATTT
Statistics
Matches: 90, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
79 15 0.17
80 71 0.79
81 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
ACTATATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
CCTTTGAACGAGAT
Found at i:32992518 original size:40 final size:39
Alignment explanation
Indices: 32992487--32992696 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
32992477 GGACTAAGAT
* *
32992487 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
32992527 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
32992567 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
32992607 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
32992647 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
32992686 CCGAAGGCATT
1 CCGAAGGCATT
32992697 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:32992650 original size:120 final size:120
Alignment explanation
Indices: 32992434--32992696 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
32992424 TTGAATGCTG
* *
32992434 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
32992498 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
32992554 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
32992617 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
32992673 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32992697 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:32992716 original size:79 final size:80
Alignment explanation
Indices: 32992435--32992731 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
32992425 TGAATGCTGT
* ** * * * **
32992435 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
32992498 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
32992515 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
32992579 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
32992595 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
32992659 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
32992674 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
32992732 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:32994428 original size:20 final size:21
Alignment explanation
Indices: 32994387--32994429 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
32994377 AAACTTGTAT
*
32994387 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACATTCAAA
*
32994408 ATCTATCATCAAACA-TCAAA
1 ATCTATCAACAAACATTCAAA
32994428 AT
1 AT
32994430 ACATTCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (21 bp):
ATCTATCAACAAACATTCAAA
Found at i:33009497 original size:24 final size:24
Alignment explanation
Indices: 33009452--33009497 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
33009442 GCTAACTGAG
* *
33009452 TGCCGATTTTGTTTCTAGCTTTGC
1 TGCCGATTTTCTTTCTAACTTTGC
33009476 TGCCGA-TTTCTTTCTCAACTTT
1 TGCCGATTTTCTTTCT-AACTTT
33009498 TCTCATCGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.11, C:0.24, G:0.15, T:0.50
Consensus pattern (24 bp):
TGCCGATTTTCTTTCTAACTTTGC
Found at i:33014527 original size:27 final size:27
Alignment explanation
Indices: 33014496--33014673 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33014486 TAAATTGTAC
33014496 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33014523 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33014549 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33014577 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33014605 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33014632 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33014659 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33014674 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33014610 original size:82 final size:81
Alignment explanation
Indices: 33014497--33014652 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33014487 AAATTGTACA
* *
33014497 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33014561 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33014578 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33014643 TGCGAGTTGA
65 TGCGAATTGA
33014653 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33014664 original size:82 final size:81
Alignment explanation
Indices: 33014493--33014673 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33014483 GATTAAATTG
* *
33014493 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33014558 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33014574 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33014638 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33014656 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33014674 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33025107 original size:27 final size:26
Alignment explanation
Indices: 33025069--33025156 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
33025059 AAAAATAGTC
*
33025069 ATTTTACCCTACAGGGATATTTTGATA
1 ATTTTACACTACAGGG-TATTTTGATA
*
33025096 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTAC-AGGGTATTTTGATA
* * *
33025123 ATTTTACA-AACTGAGGTATTTTGGTA
1 ATTTTACACTACAG-GGTATTTTGATA
33025149 ATTTTACA
1 ATTTTACA
33025157 AACTGGGGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
25 1 0.02
26 20 0.38
27 28 0.53
28 4 0.08
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (26 bp):
ATTTTACACTACAGGGTATTTTGATA
Found at i:33025150 original size:26 final size:26
Alignment explanation
Indices: 33025111--33025192 Score: 128
Period size: 26 Copynumber: 3.1 Consensus size: 26
33025101 ACACTACAAG
*
33025111 GGTATTTCGATAATTTTACAAACTGA
1 GGTATTTCGGTAATTTTACAAACTGA
* *
33025137 GGTATTTTGGTAATTTTACAAACTGGG
1 GGTATTTCGGTAATTTTACAAACT-GA
33025164 GGTATTTCGGTAATTTTACAAACTGA
1 GGTATTTCGGTAATTTTACAAACTGA
33025190 GGT
1 GGT
33025193 CTTAACGACC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
26 26 0.52
27 24 0.48
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAAACTGA
Found at i:33025151 original size:53 final size:53
Alignment explanation
Indices: 33025086--33025192 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 53
33025076 CCTACAGGGA
*
33025086 TATTTTGATAATTTTACACTAC-AAGGGTATTTCGATAATTTTACAAACTGAGG
1 TATTTTGATAATTTTACA-AACTAAGGGTATTTCGATAATTTTACAAACTGAGG
* ** *
33025139 TATTTTGGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAACTGAGG
1 TATTTTGATAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAACTGAGG
33025192 T
1 T
33025193 CTTAACGACC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.04
53 46 0.96
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
TATTTTGATAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAACTGAGG
Found at i:33025175 original size:27 final size:27
Alignment explanation
Indices: 33025110--33025188 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
33025100 TACACTACAA
*
33025110 GGGTATTTCGATAATTTTACAAACT-G
1 GGGTATTTCGGTAATTTTACAAACTGG
* *
33025136 AGGTATTTTGGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTGG
33025163 GGGTATTTCGGTAATTTTACAAACTG
1 GGGTATTTCGGTAATTTTACAAACTG
33025189 AGGTCTTAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 22 0.47
27 25 0.53
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTGG
Found at i:33036291 original size:27 final size:26
Alignment explanation
Indices: 33036253--33036340 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
33036243 AAAAATAGTC
*
33036253 ATTTTACCCTACAGGGATATTTTGATA
1 ATTTTACACTACAGGG-TATTTTGATA
*
33036280 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTAC-AGGGTATTTTGATA
* * *
33036307 ATTTTACA-AACTGAGGTATTTTGGTA
1 ATTTTACACTACAG-GGTATTTTGATA
33036333 ATTTTACA
1 ATTTTACA
33036341 AACTGGGGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
25 1 0.02
26 20 0.38
27 28 0.53
28 4 0.08
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (26 bp):
ATTTTACACTACAGGGTATTTTGATA
Found at i:33036334 original size:26 final size:26
Alignment explanation
Indices: 33036295--33036376 Score: 128
Period size: 26 Copynumber: 3.1 Consensus size: 26
33036285 ACACTACAAG
*
33036295 GGTATTTCGATAATTTTACAAACTGA
1 GGTATTTCGGTAATTTTACAAACTGA
* *
33036321 GGTATTTTGGTAATTTTACAAACTGGG
1 GGTATTTCGGTAATTTTACAAACT-GA
33036348 GGTATTTCGGTAATTTTACAAACTGA
1 GGTATTTCGGTAATTTTACAAACTGA
33036374 GGT
1 GGT
33036377 CTTAACGACC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
26 26 0.52
27 24 0.48
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAAACTGA
Found at i:33036335 original size:53 final size:53
Alignment explanation
Indices: 33036270--33036376 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 53
33036260 CCTACAGGGA
*
33036270 TATTTTGATAATTTTACACTAC-AAGGGTATTTCGATAATTTTACAAACTGAGG
1 TATTTTGATAATTTTACA-AACTAAGGGTATTTCGATAATTTTACAAACTGAGG
* ** *
33036323 TATTTTGGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAACTGAGG
1 TATTTTGATAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAACTGAGG
33036376 T
1 T
33036377 CTTAACGACC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.04
53 46 0.96
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
TATTTTGATAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAACTGAGG
Found at i:33036359 original size:27 final size:27
Alignment explanation
Indices: 33036294--33036372 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
33036284 TACACTACAA
*
33036294 GGGTATTTCGATAATTTTACAAACT-G
1 GGGTATTTCGGTAATTTTACAAACTGG
* *
33036320 AGGTATTTTGGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTGG
33036347 GGGTATTTCGGTAATTTTACAAACTG
1 GGGTATTTCGGTAATTTTACAAACTG
33036373 AGGTCTTAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 22 0.47
27 25 0.53
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTGG
Found at i:33047235 original size:89 final size:89
Alignment explanation
Indices: 33047130--33047486 Score: 696
Period size: 89 Copynumber: 4.0 Consensus size: 89
33047120 ATTTAGTTTA
33047130 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
1 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
33047195 ATTGTGGAAGCATTCAAAATCTGT
66 ATTGTGGAAGCATTCAAAATCTGT
33047219 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
1 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
33047284 ATTGTGGAAGCATTCAAAATCTGT
66 ATTGTGGAAGCATTCAAAATCTGT
*
33047308 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTTAAGAGATTTGA
1 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
33047373 ATTGTGGAAGCATTCAAAATCTGT
66 ATTGTGGAAGCATTCAAAATCTGT
*
33047397 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTTAAGAGATTTGA
1 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
33047462 ATTGTGGAAGCATTCAAAATCTGT
66 ATTGTGGAAGCATTCAAAATCTGT
33047486 G
1 G
33047487 GATTTGTGCT
Statistics
Matches: 267, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 267 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.48
Consensus pattern (89 bp):
GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
ATTGTGGAAGCATTCAAAATCTGT
Found at i:33051255 original size:44 final size:44
Alignment explanation
Indices: 33051205--33051291 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
33051195 ACTAATTATG
33051205 TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATATT
1 TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATATT
* * **
33051249 TGCACTTAGTGTGCGAGATCGAGATAGCTTTGGCTATATATAT
1 TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATAT
33051292 GTATATTGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (44 bp):
TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATATT
Found at i:33051304 original size:50 final size:46
Alignment explanation
Indices: 33051205--33051334 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 46
33051195 ACTAATTATG
* * *
33051205 TGCACTTAGTGTGCGAAATCAAGATAGCTTTAAC--TATATATATT
1 TGCACTTAGTGTGCGAGATCGAGATAGCTTTGACTATATATATATT
*
33051249 TGCACTTAGTGTGCGAGATCGAGATAGCTTTGGCTATATATATGTATAT
1 TGCACTTAGTGTGCGAGATCGAGATAGCTTTGACTATATATA--TAT-T
* * * *
33051298 TGGCACTTAGTATGCAAGATTG-TATAGCTTTGACTAT
1 T-GCACTTAGTGTGCGAGATCGAGATAGCTTTGACTAT
33051335 TTATTTGGCA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
44 30 0.42
46 6 0.08
48 3 0.04
49 15 0.21
50 17 0.24
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (46 bp):
TGCACTTAGTGTGCGAGATCGAGATAGCTTTGACTATATATATATT
Found at i:33054568 original size:47 final size:47
Alignment explanation
Indices: 33054499--33054831 Score: 594
Period size: 47 Copynumber: 7.1 Consensus size: 47
33054489 GTCACAGTGT
*
33054499 ATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
33054546 ATATATGAGATAAGGCCGAATGGCCAATTTGATGAATGTGAACATGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
33054593 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
33054640 ATATATGAGATAAGGCCGAATGGCCAATTTGATGAATGTGAACATGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
33054687 ATATATGAGATAAGGCCGAATGGCCAATTTGATGAATGTGAACATGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
33054734 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
33054781 ATATGTGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAACATGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
33054828 ATAT
1 ATAT
33054832 NNNNNNNNNN
Statistics
Matches: 276, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.25
Consensus pattern (47 bp):
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:33056080 original size:40 final size:40
Alignment explanation
Indices: 33056025--33056119 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
33056015 TGAGAGTTAT
*
33056025 ATATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
**
33056065 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
33056105 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
33056120 ACCTCGAAGG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:33056127 original size:40 final size:40
Alignment explanation
Indices: 33056025--33056139 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
33056015 TGAGAGTTAT
* *
33056025 ATATATCCGGGCTAAGTCC-CGAAGAGCATTTGTGCTAGTG
1 ATATATCCGGGCTAA-ACCTCGAAGAGCATTCGTGCTAGTG
***
33056065 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAACCTCGAAGAGCATTCGTGCTAGTG
*
33056105 ATATATCCGGGCTAAACCTCGAAG-GCATTCATGCT
1 ATATATCCGGGCTAAACCTCGAAGAGCATTCGTGCT
33056140 GGAATTATGA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 10 0.15
40 56 0.85
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAACCTCGAAGAGCATTCGTGCTAGTG
Found at i:33056214 original size:29 final size:29
Alignment explanation
Indices: 33056179--33056314 Score: 123
Period size: 29 Copynumber: 4.8 Consensus size: 29
33056169 CTCCAACCGA
* *
33056179 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
* ** *
33056208 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATCAGTAATTGAG
* **
33056236 GCACTATGTGTGTGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
* ** *
33056265 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATCAGTAATTGAG
* *
33056293 GCGCTATGTGTGCGAAATCAGT
1 GCACTATGTGTGCGAGATCAGT
33056315 CAGTGGGCAC
Statistics
Matches: 83, Mismatches: 23, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
28 39 0.47
29 44 0.53
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.32
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATTGAG
Found at i:33056237 original size:57 final size:57
Alignment explanation
Indices: 33056147--33056335 Score: 229
Period size: 57 Copynumber: 3.3 Consensus size: 57
33056137 GCTGGAATTA
* * ** * *
33056147 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGCGAGATCAGTAGT
* ** *
33056204 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGTGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGCGAGATCAGTAGT
* *
33056261 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
33056318 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
33056336 AGTGTGTTTC
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
56 14 0.12
57 98 0.87
58 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:33056260 original size:28 final size:28
Alignment explanation
Indices: 33056151--33056307 Score: 136
Period size: 28 Copynumber: 5.5 Consensus size: 28
33056141 GAATTATGAG
* * ** *
33056151 GCACTGTGTGTGCAAGTTCTCCAACCGA
1 GCACTATGTGTGCGAGTTCTGTAATCGA
* * * * *
33056179 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTGTAATCGA
*
33056207 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTGTAATCGA
* * *
33056236 GCACTATGTGTGTGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTGTAATCGA
*
33056264 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTGTAATCGA
*
33056293 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
33056308 AATCAGTCAG
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
28 56 0.55
29 45 0.45
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTGTAATCGA
Found at i:33072062 original size:927 final size:926
Alignment explanation
Indices: 33070257--33072106 Score: 3082
Period size: 927 Copynumber: 2.0 Consensus size: 926
33070247 TGAGCTGTCA
*
33070257 AATTATTAGTAGTATTAGCAGTTAACTATTTTAACATAAGGGAAATAGACGATACCTGAGCTGAT
1 AATTATTAGTAGTATTAGCAGTTAACTATTTTAACATAAGGGAAATAGACAATACCTGAGCTGAT
*
33070322 AATGAAGTGAGGGAGTCAACTTCATGAACTCCGGCTAAGCGTCTTCCTGAAGCTATTCGATTTGT
66 AATGAAGTGAGGGAGTCAACTTCATGAACTCCGGCTAAGCGTCTTCCTGAAACTATTCGATTTGT
33070387 TGGCCATTGGTAGTTATTACTCGCGATCCTCTCGATGATCTCATAAGCCTCATTATAAGACTTAG
131 TGGCCATTGGTAGTTATTACTCGCGATCCTCTCGATGATCTCATAAGCCTCATTATAAGACTTAG
33070452 ACAAAATTGCACCATTCGCGAAAGCATCTAGCATCAATCTTGTATGTGCATTAAGACCATTATAG
196 ACAAAATTGCACCATTCGCGAAAGCATCTAGCATCAATCTTGTATGTGCATTAAGACCATTATAG
33070517 AATGTCTCCAAATAGATACAGTGAGGAATCCCATGATGAGGACACTTACGAAGTAACTCTTGAAT
261 AATGTCTCCAAATAGATACAGTGAGGAATCCCATGATGAGGACACTTACGAAGTAACTCTTGAAT
* * * ** * *
33070582 CGCTCTCAAGCCTCATACAAAGACACGTCATCAAATTGTTGGAAAGTTGTGATCTCGTTCCTTAA
326 CGCTCCCAAGCCTCATACAAAGACACATCATCAAATTATTAAAAAGTTGTGATCTCATTCCTCAA
33070647 CTTAGCATTTTTGCTAGGTGGGAAATACTTAACCAAAAATCTCTCTAGTAATTCTTGCCATATAG
391 CTTAGCATTTTTGCTAGGTGGGAAATACTTAACCAAAAATCTCTCTAGTAATTCTTGCCATATAG
*
33070712 ATATGAAACTTGGTGGCAATGAATTGAGCCATGCTCATGCTCGATCTCGCAAAGAGTACAGAAAA
456 ATATGAAACTTGGTGGCAATGAATTGAGCCATGCTCATGCTCGATCTCACAAAGAGTACAGAAAA
* * * * * * *
33070777 AACTTTAACCACAATGCATTTTCAGTCACATCGGCTATCTTTAATGAATCACTCACCTCCATAAA
521 AACTTCAACCACAATGCA-CTTCAGTAACACCAGCTATCTTGAAAGAATCACTCACCTCCATAAA
* * *
33070842 CAATCGAAGGTGGAGATGTGGATCTTCCGTGGGTATAACACTAAATTGGCCCACCGTTTGTAGCA
585 CAATCGAAGGTAGAGATGTGGACCTTCCGTGGGCATAACACTAAATTGGCCCACCGTTTGTAGCA
* *
33070907 TTTGAAACATCACTAGTTTCAATTCAAATTGAGTTGCCTCATTATCTGGCCTTCTAATTCCTGGG
650 TTTGAAACATCACTAGTTTCAATTCAAACTGAGTTGCCTCAATATCTGGCCTTCTAATTCCTGGG
* * *
33070972 TTTAACTCACTGAAAAGAGGCATAACATATTGTCTAATGCATCGATCCCTATCATCGGCAATGAG
715 TTTAACTCACTAAAAAGAGGCACAACATATTGTCTAATGCATCGATCCCTATCATCAGCAATGAG
33071037 GATAGGATTTCGTACATAATCAGATTCATTACCTAGGTCTTGATTCTGATTTCCAAGGTCCATCT
780 GATAGGATTTCGTACATAATCAGATTCATTACCTAGGTCTTGATTCTGATTTCCAAGGTCCATCT
* *
33071102 CGACTTGTCTTTGAGCTGTTCATTCATGTCTTCTTTGTCTGAAAGTTCGCTCAATTTCAGGGTCT
845 CGACTTGTCTTTGAGCTGTTCATTCACGTCTTCTTTGTCTGAAAGTTCCCTCAATTTCAGGGTCT
**
33071167 GTAGGGAGTAAATTGAT
910 ACAGGGAGTAAATTGAT
* * *
33071184 AATTGTTAGTAGTATTAGCAGTTAACTGTTTTAACAT-AGAGGAAATAGTCAATACCTGAGCTGA
1 AATTATTAGTAGTATTAGCAGTTAACTATTTTAACATAAG-GGAAATAGACAATACCTGAGCTGA
* * *
33071248 TAATGAAGTGAGGGAGTCAACTTCATGAACTCCGGCTAAGTGTCTTCTTGAAACTGTTCGATTTG
65 TAATGAAGTGAGGGAGTCAACTTCATGAACTCCGGCTAAGCGTCTTCCTGAAACTATTCGATTTG
33071313 TTGGCCATTGGTAGTTATTACTCGCGATCCTCTCGATGATCTCATCAA-CCTCATTATAAGACTT
130 TTGGCCATTGGTAGTTATTACTCGCGATCCTCTCGATGATCTCAT-AAGCCTCATTATAAGACTT
*
33071377 AGACAAAATTGCACCATTCGCGGAAGCATCTAGCATCAATCTTGTATGTGCATTAAGACCATTAT
194 AGACAAAATTGCACCATTCGCGAAAGCATCTAGCATCAATCTTGTATGTGCATTAAGACCATTAT
* *
33071442 AGATTGTCTCCAACTAGATACAGT-AGGGAATCCCATGATGAGGACACTTACGAAGTAACTCCTT
259 AGAATGTCTCCAAATAGATACAGTGA-GGAATCCCATGATGAGGACACTTACGAAGTAACT-CTT
* * *
33071506 GAATCGTTCCCAAGCCTCATACAAAGACTCATCATCCAATTATTAAAAAGTTGTGATCTCATTCC
322 GAATCGCTCCCAAGCCTCATACAAAGACACATCATCAAATTATTAAAAAGTTGTGATCTCATTCC
*
33071571 TCAACTTAGCATTTTTGCTAGGTGGGAAATACTTAACCAAGAATCTCTCTAGTAATTCTTGCCAT
387 TCAACTTAGCATTTTTGCTAGGTGGGAAATACTTAACCAAAAATCTCTCTAGTAATTCTTGCCAT
*
33071636 ATAGATATGGAACTTGGTGGCAATGAATTGAGCCATGCTCATGCTCGATCTCACAAAGAGTACAG
452 ATAGATATGAAACTTGGTGGCAATGAATTGAGCCATGCTCATGCTCGATCTCACAAAGAGTACAG
* * *
33071701 AAACAACTTCAACCTCAGCGTGC-CTTCAGTAACACCAGCTATCTTGAAAGAATCACTCACCTCC
517 AAAAAACTTCAACCACA--ATGCACTTCAGTAACACCAGCTATCTTGAAAGAATCACTCACCTCC
*
33071765 ATAAACAATCGAAGGTAGAGATGTGGACCTTCCGT-GGCATACCACTAAATTGGCCCACCGTTTG
580 ATAAACAATCGAAGGTAGAGATGTGGACCTTCCGTGGGCATAACACTAAATTGGCCCACCGTTTG
* * *
33071829 TAGCATTTGAAACATCATTGGTTTCAATTCAAGCTGAGTTGCCTCAATATCTGGCCTTCTAATTC
645 TAGCATTTGAAACATCACTAGTTTCAATTCAAACTGAGTTGCCTCAATATCTGGCCTTCTAATTC
* * *
33071894 CTGGGTTTAACTCACTAAAAAGTGGCACAGCATATTGTCTGATGCATCGATCCCTATCATCAGCA
710 CTGGGTTTAACTCACTAAAAAGAGGCACAACATATTGTCTAATGCATCGATCCCTATCATCAGCA
*
33071959 ATGAGGATAGGATTTCGTACATAATC-GACTTCATTACCTTGGTCTTGATTCTGATTTCCAAGGT
775 ATGAGGATAGGATTTCGTACATAATCAGA-TTCATTACCTAGGTCTTGATTCTGATTTCCAAGGT
* *
33072023 CCATCTCGACTTGTCTTTGAGCTGTTCGTTCACGTCTTCTTTGTCTGAAAGTTCCCTCAATTTTA
839 CCATCTCGACTTGTCTTTGAGCTGTTCATTCACGTCTTCTTTGTCTGAAAGTTCCCTCAATTTCA
33072088 GGGTCTACAGGGAGTAAAT
904 GGGTCTACAGGGAGTAAAT
33072107 CGTTAATTTG
Statistics
Matches: 860, Mismatches: 56, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
926 5 0.01
927 583 0.68
928 269 0.31
930 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (926 bp):
AATTATTAGTAGTATTAGCAGTTAACTATTTTAACATAAGGGAAATAGACAATACCTGAGCTGAT
AATGAAGTGAGGGAGTCAACTTCATGAACTCCGGCTAAGCGTCTTCCTGAAACTATTCGATTTGT
TGGCCATTGGTAGTTATTACTCGCGATCCTCTCGATGATCTCATAAGCCTCATTATAAGACTTAG
ACAAAATTGCACCATTCGCGAAAGCATCTAGCATCAATCTTGTATGTGCATTAAGACCATTATAG
AATGTCTCCAAATAGATACAGTGAGGAATCCCATGATGAGGACACTTACGAAGTAACTCTTGAAT
CGCTCCCAAGCCTCATACAAAGACACATCATCAAATTATTAAAAAGTTGTGATCTCATTCCTCAA
CTTAGCATTTTTGCTAGGTGGGAAATACTTAACCAAAAATCTCTCTAGTAATTCTTGCCATATAG
ATATGAAACTTGGTGGCAATGAATTGAGCCATGCTCATGCTCGATCTCACAAAGAGTACAGAAAA
AACTTCAACCACAATGCACTTCAGTAACACCAGCTATCTTGAAAGAATCACTCACCTCCATAAAC
AATCGAAGGTAGAGATGTGGACCTTCCGTGGGCATAACACTAAATTGGCCCACCGTTTGTAGCAT
TTGAAACATCACTAGTTTCAATTCAAACTGAGTTGCCTCAATATCTGGCCTTCTAATTCCTGGGT
TTAACTCACTAAAAAGAGGCACAACATATTGTCTAATGCATCGATCCCTATCATCAGCAATGAGG
ATAGGATTTCGTACATAATCAGATTCATTACCTAGGTCTTGATTCTGATTTCCAAGGTCCATCTC
GACTTGTCTTTGAGCTGTTCATTCACGTCTTCTTTGTCTGAAAGTTCCCTCAATTTCAGGGTCTA
CAGGGAGTAAATTGAT
Found at i:33080664 original size:14 final size:14
Alignment explanation
Indices: 33080640--33080684 Score: 65
Period size: 14 Copynumber: 3.1 Consensus size: 14
33080630 TTCCCGGCCC
33080640 AAATCAAATAAATAA
1 AAAT-AAATAAATAA
33080655 ACAA-AAATAAATAA
1 A-AATAAATAAATAA
33080669 AAATAAATAAATAA
1 AAATAAATAAATAA
33080683 AA
1 AA
33080685 CCAAGTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.07
14 23 0.82
15 1 0.04
16 2 0.07
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (14 bp):
AAATAAATAAATAA
Found at i:33080676 original size:10 final size:10
Alignment explanation
Indices: 33080649--33080679 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
33080639 CAAATCAAAT
*
33080649 AAATAAACAA
1 AAATAAATAA
33080659 AAATAAATAA
1 AAATAAATAA
33080669 AAATAAATAA
1 AAATAAATAA
33080679 A
1 A
33080680 TAAAACCAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (10 bp):
AAATAAATAA
Found at i:33087094 original size:12 final size:12
Alignment explanation
Indices: 33087073--33087180 Score: 56
Period size: 12 Copynumber: 8.8 Consensus size: 12
33087063 TTCCATAAAA
*
33087073 AAAATCAAAATC
1 AAAATAAAAATC
*
33087085 AAAATAAAAAAC
1 AAAATAAAAATC
* *
33087097 AAAAAAGAAAAAATG
1 --AAAA-TAAAAATC
* **
33087112 AAAGTAAAAAAA
1 AAAATAAAAATC
*
33087124 AAAAGAAAAATC
1 AAAATAAAAATC
* *
33087136 AAAATCAAAGTC
1 AAAATAAAAATC
* *
33087148 AAAATGAAAATG
1 AAAATAAAAATC
* *
33087160 AAAATGAAAATG
1 AAAATAAAAATC
33087172 AAAA-AAAAA
1 AAAATAAAAA
33087181 GAGAAGAAAA
Statistics
Matches: 73, Mismatches: 20, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
11 4 0.05
12 57 0.78
13 3 0.04
14 4 0.05
15 5 0.07
ACGTcount: A:0.75, C:0.06, G:0.08, T:0.11
Consensus pattern (12 bp):
AAAATAAAAATC
Found at i:33087212 original size:12 final size:11
Alignment explanation
Indices: 33087148--33087210 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 11
33087138 AATCAAAGTC
*
33087148 AAAATGAAAATG
1 AAAA-GAAAAAG
*
33087160 AAAATGAAAATG
1 AAAA-GAAAAAG
33087172 AAAA-AAAAAG
1 AAAAGAAAAAG
*
33087182 AGAAGAAAAAG
1 AAAAGAAAAAG
33087193 AAAAAGGAAAAAG
1 -AAAA-GAAAAAG
33087206 AAAAG
1 AAAAG
33087211 GAGAGGCCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
10 8 0.18
11 7 0.16
12 23 0.51
13 7 0.16
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:33088086 original size:13 final size:13
Alignment explanation
Indices: 33088070--33088097 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
33088060 AGAAAAAAAG
33088070 AAATGAAAATGAA
1 AAATGAAAATGAA
33088083 AAATGAAAATGAA
1 AAATGAAAATGAA
33088096 AA
1 AA
33088098 GTAATGACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAATGAAAATGAA
Found at i:33089561 original size:88 final size:87
Alignment explanation
Indices: 33089280--33090005 Score: 789
Period size: 88 Copynumber: 8.3 Consensus size: 87
33089270 AACAGATCAG
* * * **
33089280 TAAAGATAGCAGATCTTACCATCCTGCATTGACAGCGAAGCAGATCGAA-AGCAAAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* *
33089344 CCAACGGTTGCAGTGGAGCGGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * * * * ** *
33089367 TAAAGATAGCAGATCTTGCCTTCCTGTATTCACAGCGAAGCAGAT-AAAAAACGAAGCCTTACCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
*
33089431 CCCTCGGTTGCAGTGGAGCAGGT
65 CCATCGGTTGCAGTGGAGCAGGT
33089454 TAAAGATAGCAGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCAT-GACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* *
33089519 CCATTGGTTTCAGTGGAGCAGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * * * * *
33089542 TAAAGATGGCAGATCTTGCCTTTCTGCATAAATAGTGAAACAGATCGAAGACCCCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCAT-GACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* *
33089607 CCATTGGTTGCAGTGGAGCGGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * ****
33089630 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAATCGAA-AATAAAGTCC-TGCC
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAG-CCTTGCC
* *
33089693 TCCATCGGTTGTAGTGGAGCGGGT
64 TCCATCGGTTGCAGTGGAGCAGGT
* * ** *
33089717 TAAAGATAGCAGATCTTGCCCTCCTGCGCTGACAGTAAAGCAGATCAAAGACCCCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGC-ATGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * *
33089782 CCATCGGTTACAGTGAAGCGGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * **
33089805 TAAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGTAGATCGAAGATACCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * *
33089870 CCTTCGGTTACAGTGGAACAGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * * * *
33089893 TAAAGATAGCAGATCTGGCCCTCCTACGC-TGACAGCAAAGTAGATCGAAGACACCAGCCTTGCC
1 TAAAGATAGCAGATCTTGCCTTCCT--GCATGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCC
* *
33089957 TCTC-TCAGTTGCAGTGGAGTAGGT
64 TC-CATCGGTTGCAGTGGAGCAGGT
* *
33089981 TGAAGATAGCAGATCTTGCTTTCCT
1 TAAAGATAGCAGATCTTGCCTTCCT
33090006 TTATCGACAG
Statistics
Matches: 545, Mismatches: 82, Indels: 23
0.84 0.13 0.04
Matches are distributed among these distances:
86 3 0.01
87 188 0.34
88 351 0.64
89 2 0.00
90 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (87 bp):
TAAAGATAGCAGATCTTGCCTTCCTGCATGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTC
CATCGGTTGCAGTGGAGCAGGT
Found at i:33089695 original size:175 final size:175
Alignment explanation
Indices: 33089280--33090005 Score: 806
Period size: 175 Copynumber: 4.1 Consensus size: 175
33089270 AACAGATCAG
* * *
33089280 TAAAGATAGCAGATCTTACCATCCTGCATTGACAGCGAAGCAGATCGAAAGCAAAGCCTTGCCTC
1 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTC
* * * * * * *
33089345 CAACGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGTATTCACAGCG-AAGCA
66 CATCGGTTTCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCCTCCTGCA-TGACAGTGAAAGCA
* * ** * *
33089409 GAT-AAAAAACGAAGCCTTACCTCCCTCGGTTGCAGTGGAGCAGGT
130 GATCAAAGACCCCAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGT
* * **
33089454 TAAAGATAGCAGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA-AACAAAGCCTTGCCT
* * * * * *
33089519 CCATTGGTTTCAGTGGAGCAGGTTAAAGATGGCAGATCTTGCCTTTCTGCATAAATAGTGAAA-C
65 CCATCGGTTTCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCCTCCTGCAT-GACAGTGAAAGC
* * *
33089583 AGATCGAAGACCCCAGCCTTGCCTCCATTGGTTGCAGTGGAGCGGGT
129 AGATCAAAGACCCCAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGT
* * *
33089630 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAATCGAAAATAAAGTCC-TGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAG-CCTTGCCT
* *
33089694 CCATCGGTTGT-AGTGGAGCGGGTTAAAGATAGCAGATCTTGCCCTCCTGCGCTGACAGT-AAAG
65 CCATCGGTT-TCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCCTCCTGC-ATGACAGTGAAAG
* * *
33089757 CAGATCAAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGAAGCGGGT
128 CAGATCAAAGACCCCAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGT
* * * *
33089805 TAAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGTAGATCGAAGATAC-CAGCCTTGCC
1 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCC
* * * * *
33089869 TCCTTCGGTTACAGTGGAACAGGTTAAAGATAGCAGATCTGGCCCTCCTACGC-TGACAG-CAAA
64 TCCATCGGTTTCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCCTCCT--GCATGACAGTGAAA
* * * * *
33089932 GTAGATCGAAGACACCAGCCTTGCCTCTC-TCAGTTGCAGTGGAGTAGGT
127 GCAGATCAAAGACCCCAGCCTTGCCTC-CATCGGTTGCAGTGGAGCAGGT
* *
33089981 TGAAGATAGCAGATCTTGCTTTCCT
1 TAAAGATAGCAGATCTTGCCTTCCT
33090006 TTATCGACAG
Statistics
Matches: 470, Mismatches: 66, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
174 50 0.11
175 210 0.45
176 206 0.44
177 2 0.00
178 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (175 bp):
TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTC
CATCGGTTTCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCCTCCTGCATGACAGTGAAAGCAG
ATCAAAGACCCCAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGT
Found at i:33089808 original size:263 final size:262
Alignment explanation
Indices: 33089280--33089999 Score: 840
Period size: 263 Copynumber: 2.7 Consensus size: 262
33089270 AACAGATCAG
* * * * * * *
33089280 TAAAGATAGCAGATCTTACCATCCTGCATTGACAGCGAAGCAGATCGAA-AGCA-AAGCCTTGCC
1 TAAAGATAGCAGATCTTGCCTTCCTACACTAACAGCGAAACAGATCGAAGA-CACCAGCCTTGCC
** * * *
33089343 TCCAACGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGTATTCACAGCGAAGC
65 TCCATTGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCAAAGC
** * *
33089408 AGATAAAAAACGAAGCCTTACCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGC
130 AGATCGAAAACAAAGCCTTGCCT-CCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGC
* * * * * *
33089473 CTTCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTCCATTGGTTTCAGTGGAGC
194 CCTCCTGCATAGACAGCAAAGCAGATCAAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGAAGC
33089538 AGGT
259 AGGT
* * * * * *
33089542 TAAAGATGGCAGATCTTGCCTTTCTGCA-TAAATAGTGAAACAGATCGAAGACCCCAGCCTTGCC
1 TAAAGATAGCAGATCTTGCCTTCCTACACT-AACAGCGAAACAGATCGAAGACACCAGCCTTGCC
33089606 TCCATTGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCAAAGC
65 TCCATTGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCAAAGC
* * * *
33089671 AAATCGAAAATAAAGTCC-TGCCTCCATCGGTTGTAGTGGAGCGGGTTAAAGATAGCAGATCTTG
130 AGATCGAAAACAAAG-CCTTGCCTCC-TCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
* *
33089735 CCCTCCTGCGCT-GACAGTAAAGCAGATCAAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGAA
193 CCCTCCTGC-ATAGACAGCAAAGCAGATCAAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGAA
*
33089799 GCGGGT
257 GCAGGT
* ** *
33089805 TAAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGTAGATCGAAGATACCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTACACTAACAGCGAAACAGATCGAAGACACCAGCCTTGCCT
* * * * * * ** *
33089870 CC-TTCGGTTACAGTGGAACAGGTTAAAGATAGCAGATCTGGCCCTCCTACGCTGACAGCAAAGT
66 CCATT-GGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCAAAGC
* * * * *
33089934 AGATCGAAGACACCAGCCTTGCCTCTCTCAGTTGCAGTGGAGTAGGTTGAAGATAGCAGATCTTG
130 AGATCGAAAACA-AAGCCTTGCCTC-CTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
33089999 C
193 C
33090000 TTTCCTTTAT
Statistics
Matches: 387, Mismatches: 60, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
261 1 0.00
262 44 0.11
263 295 0.76
264 46 0.12
265 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (262 bp):
TAAAGATAGCAGATCTTGCCTTCCTACACTAACAGCGAAACAGATCGAAGACACCAGCCTTGCCT
CCATTGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCAAAGCA
GATCGAAAACAAAGCCTTGCCTCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCC
TCCTGCATAGACAGCAAAGCAGATCAAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGAAGCAG
GT
Found at i:33090817 original size:27 final size:28
Alignment explanation
Indices: 33090764--33090818 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
33090754 CCCAAAATCT
*
33090764 AACCCAATTAACCTAGCCCAATATAAAC
1 AACCCAATTAACCTAGCCCAACATAAAC
* * *
33090792 AACCC-ATTAATCTAGCCCGACCTAAAC
1 AACCCAATTAACCTAGCCCAACATAAAC
33090819 TCGATTCTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.42, C:0.35, G:0.05, T:0.18
Consensus pattern (28 bp):
AACCCAATTAACCTAGCCCAACATAAAC
Found at i:33106391 original size:79 final size:81
Alignment explanation
Indices: 33106255--33106439 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
33106245 TTGAATGATG
*
33106255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33106319 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33106334 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33106396 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33106414 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33106440 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33106453 original size:40 final size:40
Alignment explanation
Indices: 33106256--33106439 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
33106246 TGAATGATGT
* * * *
33106256 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33106296 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33106336 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33106374 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33106415 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33106440 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33106461 original size:79 final size:79
Alignment explanation
Indices: 33106256--33106472 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
33106246 TGAATGATGT
** * * * **
33106256 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
33106319 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
33106336 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
33106401 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
33106415 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
33106473 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:33114442 original size:40 final size:40
Alignment explanation
Indices: 33114203--33114428 Score: 303
Period size: 40 Copynumber: 5.7 Consensus size: 40
33114193 TTGAATGATG
* * * * *
33114203 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGGCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
33114243 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
33114283 TCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33114323 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33114363 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
33114404 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGGCCCGAAGGCATTTG
33114429 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
40 161 0.95
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33121922 original size:10 final size:10
Alignment explanation
Indices: 33121907--33121973 Score: 66
Period size: 10 Copynumber: 6.6 Consensus size: 10
33121897 CATGCGGCTC
*
33121907 AGCTCACTCG
1 AGCTCATTCG
33121917 AGCTCAATTCG
1 AGCTC-ATTCG
33121928 AGCTCAATTC-
1 AGCTC-ATTCG
*
33121938 AGCTCACTCG
1 AGCTCATTCG
*
33121948 AGCTCAAGTC-
1 AGCTC-ATTCG
33121958 AGCTCATTCG
1 AGCTCATTCG
33121968 AGCTCA
1 AGCTCA
33121974 AGTCAGCTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
9 6 0.12
10 26 0.53
11 17 0.35
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (10 bp):
AGCTCATTCG
Found at i:33121943 original size:31 final size:29
Alignment explanation
Indices: 33121905--33121973 Score: 102
Period size: 31 Copynumber: 2.3 Consensus size: 29
33121895 TCCATGCGGC
*
33121905 TCAGCTCACTCGAGCTCAATTCGAGCTCAAT
1 TCAGCTCACTCGAGCTCAAGTC-AGCTC-AT
33121936 TCAGCTCACTCGAGCTCAAGTCAGCTCAT
1 TCAGCTCACTCGAGCTCAAGTCAGCTCAT
33121965 TCGAGCTCA
1 TC-AGCTCA
33121974 AGTCAGCTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 4 0.11
30 11 0.31
31 21 0.58
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
TCAGCTCACTCGAGCTCAAGTCAGCTCAT
Found at i:33121950 original size:20 final size:20
Alignment explanation
Indices: 33121925--33122003 Score: 97
Period size: 20 Copynumber: 4.0 Consensus size: 20
33121915 CGAGCTCAAT
*
33121925 TCGAGCTCAATTCAGCTCAC
1 TCGAGCTCAAGTCAGCTCAC
*
33121945 TCGAGCTCAAGTCAGCTCAT
1 TCGAGCTCAAGTCAGCTCAC
33121965 TCGAGCTCAAGTCAGCTTC-C
1 TCGAGCTCAAGTCAGC-TCAC
* * *
33121985 ACGAGCTTAATTCAGCTCA
1 TCGAGCTCAAGTCAGCTCA
33122004 TTGAGCTCGT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
19 2 0.04
20 47 0.92
21 2 0.04
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (20 bp):
TCGAGCTCAAGTCAGCTCAC
Found at i:33121974 original size:40 final size:40
Alignment explanation
Indices: 33121917--33122011 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
33121907 AGCTCACTCG
* *
33121917 AGCTCAATTCGAGCTCAATTCAGC-TCACTCGAGCTCAAGTC
1 AGCTC-ATTCGAGCTCAAGTCAGCTTC-CACGAGCTCAAGTC
* *
33121958 AGCTCATTCGAGCTCAAGTCAGCTTCCACGAGCTTAATTC
1 AGCTCATTCGAGCTCAAGTCAGCTTCCACGAGCTCAAGTC
33121998 AGCTCATT-GAGCTC
1 AGCTCATTCGAGCTC
33122012 GTTATTAGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
39 6 0.12
40 36 0.73
41 7 0.14
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (40 bp):
AGCTCATTCGAGCTCAAGTCAGCTTCCACGAGCTCAAGTC
Found at i:33121981 original size:10 final size:11
Alignment explanation
Indices: 33121914--33121974 Score: 76
Period size: 10 Copynumber: 5.9 Consensus size: 11
33121904 CTCAGCTCAC
33121914 TCGAGCTCAAT
1 TCGAGCTCAAT
33121925 TCGAGCTCAAT
1 TCGAGCTCAAT
*
33121936 TC-AGCTC-AC
1 TCGAGCTCAAT
*
33121945 TCGAGCTCAAG
1 TCGAGCTCAAT
33121956 TC-AGCTC-AT
1 TCGAGCTCAAT
33121965 TCGAGCTCAA
1 TCGAGCTCAA
33121975 GTCAGCTTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
9 6 0.14
10 20 0.47
11 17 0.40
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (11 bp):
TCGAGCTCAAT
Found at i:33124028 original size:40 final size:39
Alignment explanation
Indices: 33123930--33124192 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
33123920 TCCTCGTTCA
* * * *
33123930 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33123969 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33124008 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33124048 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33124088 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33124128 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33124169 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33124193 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33124152 original size:120 final size:119
Alignment explanation
Indices: 33123930--33124192 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
33123920 TCCTCGTTCA
* * *
33123930 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
33123995 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
33124048 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
33124113 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
33124169 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33124193 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:33124201 original size:41 final size:41
Alignment explanation
Indices: 33124124--33124201 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33124114 TTTGTATCTC
* * *
33124124 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33124165 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33124202 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33131974 original size:40 final size:39
Alignment explanation
Indices: 33131876--33132138 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
33131866 TCCTCGTTCA
* * * *
33131876 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33131915 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33131954 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33131994 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33132034 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33132074 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33132115 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33132139 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33132098 original size:120 final size:119
Alignment explanation
Indices: 33131876--33132138 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
33131866 TCCTCGTTCA
* * *
33131876 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
33131941 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
33131994 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
33132059 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
33132115 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33132139 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:33132147 original size:41 final size:41
Alignment explanation
Indices: 33132070--33132147 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33132060 TTTGTATCTC
* * *
33132070 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33132111 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33132148 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33136598 original size:81 final size:81
Alignment explanation
Indices: 33136483--33136767 Score: 342
Period size: 81 Copynumber: 3.5 Consensus size: 81
33136473 AAGGGTATAA
* * * *
33136483 CAGTCGTTTTACCCTTCTG-GGGTATTTCGATCATTTTACCCATCGGGGGTATTTCGGTTATTTT
1 CAGTCATTTTACCCATC-GAGGGTATTTCGGTCATTTTACCCATCGGGGGTATTTCGATTATTTT
33136547 ACCCTTCGGGGGTATTT
65 ACCCTTCGGGGGTATTT
* ** * * *
33136564 CAGTCATTTTACCCATCGAGGGTATTTTGGTCATTTTAAACTTCGAGGGTATTTCAATTATTTTA
1 CAGTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGGGGGTATTTCGATTATTTTA
*
33136629 CCCTTCGGGGGTCTTT
66 CCCTTCGGGGGTATTT
* * * * * *
33136645 CATTCATTTTACCTATCTAGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGATCATTTTA
1 CAGTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGGGGGTATTTCGATTATTTTA
*
33136710 CCCTTCGAGGGTATTT
66 CCCTTCGGGGGTATTT
* * *
33136726 TAGGT-ATTTTACCCATCGGGGGTATTTCGGTTATTTT-CCCAT
1 CA-GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCAT
33136768 AAATTACAGG
Statistics
Matches: 171, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
80 5 0.03
81 165 0.96
82 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.42
Consensus pattern (81 bp):
CAGTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGGGGGTATTTCGATTATTTTA
CCCTTCGGGGGTATTT
Found at i:33136760 original size:27 final size:27
Alignment explanation
Indices: 33136489--33136762 Score: 291
Period size: 27 Copynumber: 10.1 Consensus size: 27
33136479 ATAACAGTCG
* *
33136489 TTTTACCCTTCTGGGGTATTTCGATCA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
* *
33136516 TTTTACCCATCGGGGGTATTTCGGTTA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
*
33136543 TTTTACCCTTCGGGGGTATTTCAGTCA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
* * *
33136570 TTTTACCCATCGAGGGTATTTTGGTCA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
** * ** *
33136597 TTTTAAACTTCGAGGGTATTTCAATTA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
* **
33136624 TTTTACCCTTCGGGGGTCTTTCATTCA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
** *
33136651 TTTTA-CCTATCTAGGGTATTTCAGTCA
1 TTTTACCCT-TCGGGGGTATTTCGGTCA
*
33136678 TTTTACCCTTCGGGGGTATTTCGATCA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
* *
33136705 TTTTACCCTTCGAGGGTATTTTAGGT-A
1 TTTTACCCTTCGGGGGTA-TTTCGGTCA
* *
33136732 TTTTACCCATCGGGGGTATTTCGGTTA
1 TTTTACCCTTCGGGGGTATTTCGGTCA
33136759 TTTT
1 TTTT
33136763 CCCATAAATT
Statistics
Matches: 205, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.04
27 188 0.92
28 8 0.04
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
TTTTACCCTTCGGGGGTATTTCGGTCA
Found at i:33143836 original size:26 final size:26
Alignment explanation
Indices: 33143807--33143878 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
33143797 AATAACGTAG
*
33143807 CAAAGCTGCCAGTAACAGTAACACAA
1 CAAAGCTACCAGTAACAGTAACACAA
* * **
33143833 CAAAGCTACGAATAACAGTAATGCAA
1 CAAAGCTACCAGTAACAGTAACACAA
*
33143859 CAAAGCTTCCAGTAACAGTA
1 CAAAGCTACCAGTAACAGTA
33143879 TATGTGGCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.46, C:0.24, G:0.15, T:0.15
Consensus pattern (26 bp):
CAAAGCTACCAGTAACAGTAACACAA
Found at i:33144105 original size:27 final size:26
Alignment explanation
Indices: 33144054--33144304 Score: 186
Period size: 27 Copynumber: 9.3 Consensus size: 26
33144044 GGGGTATAAC
* *
33144054 AGTCATTTTACCTTTCGGGGGTATTTT
1 AGTCATTTTACCCTTC-AGGGTATTTT
* *
33144081 AGTCATTTTACCCATCAGGGATATTTC
1 AGTCATTTTACCCTTCAGGG-TATTTT
*
33144108 GGTCATTTTACCCTTCAAGGGTATTTCT
1 AGTCATTTTACCCTTC-AGGGTATTT-T
*
33144136 A-TCATTTTACCCTTCGAAGGTATTTCT
1 AGTCATTTTACCCTTC-AGGGTATTT-T
* * *
33144163 A-TCATTTTACCCTTTGAAGTTATTTCT
1 AGTCATTTTACCC-TTCAGGGTATTT-T
* * *
33144190 A-TCATTTTACCCTTTGAAGTTATTTT
1 AGTCATTTTACCC-TTCAGGGTATTTT
* **
33144216 GGTCATTTTACCCATTGGGGGTATTTCT
1 AGTCATTTTACCC-TTCAGGGTATTT-T
* *
33144244 -GTCATTTTACCCTTCGGGGGTATTTC
1 AGTCATTTTACCCTTC-AGGGTATTTT
* *
33144270 AGTCATTTTACCCATCGAGGGTATTTC
1 AGTCATTTTACCCTTC-AGGGTATTTT
33144297 AGTCATTT
1 AGTCATTT
33144305 GCCACGAATT
Statistics
Matches: 195, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.03
27 182 0.93
28 7 0.04
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.45
Consensus pattern (26 bp):
AGTCATTTTACCCTTCAGGGTATTTT
Found at i:33144141 original size:54 final size:53
Alignment explanation
Indices: 33144055--33144304 Score: 245
Period size: 54 Copynumber: 4.6 Consensus size: 53
33144045 GGGTATAACA
* * *
33144055 GTCATTTTACCTTTCGGGGGTATTT-TAGTCATTTTACCCATCAGGGATATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCTA-TCATTTTACCCTTCAGGG-TATTTCG
* * *
33144109 GTCATTTTACCCTTCAAGGGTATTTCTATCATTTTACCCTTCGAAGGTATTTCT
1 GTCATTTTACCCTTCGAGGGTATTTCTATCATTTTACCCTTC-AGGGTATTTCG
* * * * * * * *
33144163 ATCATTTTACCCTTTGAAGTTATTTCTATCATTTTACCCTTTGAAGTTATTTTG
1 GTCATTTTACCCTTCGAGGGTATTTCTATCATTTTACCC-TTCAGGGTATTTCG
* * * *
33144217 GTCATTTTACCCATT-GGGGGTATTTCTGTCATTTTACCCTTCGGGGGTATTTCA
1 GTCATTTTACCC-TTCGAGGGTATTTCTATCATTTTACCCTTC-AGGGTATTTCG
*
33144271 GTCATTTTACCCATCGAGGGTATTTC-AGTCATTT
1 GTCATTTTACCCTTCGAGGGTATTTCTA-TCATTT
33144305 GCCACGAATT
Statistics
Matches: 160, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
53 3 0.02
54 148 0.93
55 9 0.06
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (53 bp):
GTCATTTTACCCTTCGAGGGTATTTCTATCATTTTACCCTTCAGGGTATTTCG
Found at i:33144187 original size:81 final size:81
Alignment explanation
Indices: 33144073--33144304 Score: 217
Period size: 81 Copynumber: 2.9 Consensus size: 81
33144063 ACCTTTCGGG
* * *
33144073 GGTATTT-TAGTCATTTTACCCATC-AGGGATATTTCGGTCATTTTACCCTTCAAGGGTATTTCT
1 GGTATTTCTA-TCATTTTACCCTTCGAAGG-TATTTCAGTCATTTTACCCTTCAAGGGTATTTCT
33144136 ATCATTTTACCC-TTCGAA
64 ATCATTTTACCCATT-GAA
* * * *
33144154 GGTATTTCTATCATTTTACCCTTTGAAGTTATTTCTA-TCATTTTACCCTTTGAA-GTTATTT-T
1 GGTATTTCTATCATTTTACCCTTCGAAGGTATTTC-AGTCATTTTACCC-TTCAAGGGTATTTCT
* **
33144216 GGTCATTTTACCCATTGGG
64 -ATCATTTTACCCATTGAA
* ** * *
33144235 GGTATTTCTGTCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCATCGAGGGTATTTC-AG
1 GGTATTTCTATCATTTTACCCTTCGAAGGTATTTCAGTCATTTTACCCTTCAAGGGTATTTCTA-
33144299 TCATTT
65 TCATTT
33144305 GCCACGAATT
Statistics
Matches: 121, Mismatches: 20, Indels: 20
0.75 0.12 0.12
Matches are distributed among these distances:
80 4 0.03
81 107 0.88
82 10 0.08
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (81 bp):
GGTATTTCTATCATTTTACCCTTCGAAGGTATTTCAGTCATTTTACCCTTCAAGGGTATTTCTAT
CATTTTACCCATTGAA
Found at i:33147382 original size:18 final size:19
Alignment explanation
Indices: 33147359--33147394 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
33147349 TCTGTTCAAG
33147359 TTTATTTTAATTT-TTTTC
1 TTTATTTTAATTTATTTTC
*
33147377 TTTATTTTTATTTATTTT
1 TTTATTTTAATTTATTTT
33147395 TGCAGAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTATTTTAATTTATTTTC
Found at i:33167647 original size:16 final size:16
Alignment explanation
Indices: 33167626--33167657 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33167616 GTTTTGTTGC
*
33167626 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
33167642 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
33167658 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:33167960 original size:51 final size:51
Alignment explanation
Indices: 33167883--33168074 Score: 196
Period size: 51 Copynumber: 3.8 Consensus size: 51
33167873 ATCGATTCAG
* * *
33167883 ATAGTAGCCTGTACATATTACTACACATGTGACCATCACTATATGATACAC
1 ATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATATGGTACAC
* * * **
33167934 GTAGTAGCCTAG-ACATAGTACTACACATGTGATCGA--AGCTATCTGGTACGT
1 ATAGTAGCCT-GCACATAGTACTACACATGTGA-CCATCA-CTATATGGTACAC
*
33167985 ATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TATGGTACAC
1 ATAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTATATGGTACAC
* * * *
33168035 TTAGTAGCCTACACATAGTATTACACACGTGACCATCACT
1 ATAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
33168075 TTCATTTTCA
Statistics
Matches: 115, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
49 4 0.03
50 40 0.35
51 67 0.58
52 3 0.03
53 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (51 bp):
ATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATATGGTACAC
Found at i:33168060 original size:101 final size:102
Alignment explanation
Indices: 33167883--33168066 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 102
33167873 ATCGATTCAG
* * * *
33167883 ATAGTAGCCTGTACATATTACTACACATGTGACCATCACTATATGATACACGTAGTAGCCTAGAC
1 ATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATATGATACACGTAGTAGCCTACAC
*
33167948 ATAGTACTACACATGTGATCGAAGCTATCTGGTACGT
66 ATAGTACTACACACGTGATCGAAGCTATCTGGTACGT
* *
33167985 ATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TATGGTACACTTAGTAGCCTACA
1 ATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATATGATACACGTAGTAGCCTACA
*
33168048 CATAGTATTACACACGTGA
65 CATAGTACTACACACGTGA
33168067 CCATCACTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
101 37 0.51
102 32 0.44
103 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (102 bp):
ATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATATGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAGCTATCTGGTACGT
Found at i:33169358 original size:72 final size:72
Alignment explanation
Indices: 33169241--33169384 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
33169231 CGTGTTATGG
33169241 ATTCCTCTGGTGAATTGAACTCTCTCTTGCTTTCCAAAAATGCAGTGCTCATAGAACTTCAGTTC
1 ATTCCTCTGGTGAATTGAACTCTCTCTTGCTTTCCAAAAATGCAGTGCTCATAGAACTTCAGTTC
33169306 GCAAATT
66 GCAAATT
33169313 ATTCCTCTGGTGAATTGAACTCTCTCTTGCTTTCCAAAAATGCAGTGCTCATAGAACTTCAGTTC
1 ATTCCTCTGGTGAATTGAACTCTCTCTTGCTTTCCAAAAATGCAGTGCTCATAGAACTTCAGTTC
33169378 GCAAATT
66 GCAAATT
33169385 TCTTGCCCTT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (72 bp):
ATTCCTCTGGTGAATTGAACTCTCTCTTGCTTTCCAAAAATGCAGTGCTCATAGAACTTCAGTTC
GCAAATT
Found at i:33187025 original size:54 final size:54
Alignment explanation
Indices: 33186966--33187074 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
33186956 GAAGAGAAAG
*
33186966 TGAATAAAAATGGTTGTTTTGTATGTATTCCAATCGGCACAGCGAAGAGGGGGT
1 TGAATAAAAATGGTTGTTTTGTATGTATTCCAATCGGCACAGCGAAGAGGCGGT
*
33187020 TGAATAAAAATGGTTGTTTTGTATGTATTCCAATCGGCACAGTGAAGAGGCGGT
1 TGAATAAAAATGGTTGTTTTGTATGTATTCCAATCGGCACAGCGAAGAGGCGGT
33187074 T
1 T
33187075 TATAGCGATT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.29, C:0.11, G:0.28, T:0.31
Consensus pattern (54 bp):
TGAATAAAAATGGTTGTTTTGTATGTATTCCAATCGGCACAGCGAAGAGGCGGT
Found at i:33194817 original size:161 final size:161
Alignment explanation
Indices: 33194552--33194874 Score: 646
Period size: 161 Copynumber: 2.0 Consensus size: 161
33194542 TAATAAACTG
33194552 GAGTCCCCAACGTGAATATTCAACAGAATACTAAGTGCTCACAAGGTATAAAAGGATAGGTGATT
1 GAGTCCCCAACGTGAATATTCAACAGAATACTAAGTGCTCACAAGGTATAAAAGGATAGGTGATT
33194617 GTCGATGCATTAAATTGCAATAAATATCTTACCAAACTTAAATTTTATATTTAATCTAAGACTTA
66 GTCGATGCATTAAATTGCAATAAATATCTTACCAAACTTAAATTTTATATTTAATCTAAGACTTA
33194682 AACATGCACATTAACCACACCTTCTGATGAT
131 AACATGCACATTAACCACACCTTCTGATGAT
33194713 GAGTCCCCAACGTGAATATTCAACAGAATACTAAGTGCTCACAAGGTATAAAAGGATAGGTGATT
1 GAGTCCCCAACGTGAATATTCAACAGAATACTAAGTGCTCACAAGGTATAAAAGGATAGGTGATT
33194778 GTCGATGCATTAAATTGCAATAAATATCTTACCAAACTTAAATTTTATATTTAATCTAAGACTTA
66 GTCGATGCATTAAATTGCAATAAATATCTTACCAAACTTAAATTTTATATTTAATCTAAGACTTA
33194843 AACATGCACATTAACCACACCTTCTGATGAT
131 AACATGCACATTAACCACACCTTCTGATGAT
33194874 G
1 G
33194875 GCAATGTAAC
Statistics
Matches: 162, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 162 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (161 bp):
GAGTCCCCAACGTGAATATTCAACAGAATACTAAGTGCTCACAAGGTATAAAAGGATAGGTGATT
GTCGATGCATTAAATTGCAATAAATATCTTACCAAACTTAAATTTTATATTTAATCTAAGACTTA
AACATGCACATTAACCACACCTTCTGATGAT
Found at i:33198333 original size:50 final size:49
Alignment explanation
Indices: 33198228--33198368 Score: 140
Period size: 50 Copynumber: 2.8 Consensus size: 49
33198218 TCATTGAGAT
* * * * **
33198228 TATGAGAGGCCCCACGTAAGACCATGTCTGGGACATGGCGTTGGTACCGA
1 TATGAGAGGCCCC-CATAAGACCATATCTGGGACATGGCATAGACACCGA
* *
33198278 GATGAGAGGTCCCCCATAAGACCATATCTGGGACATGGCATAGACACTGA
1 TATGAGAGG-CCCCCATAAGACCATATCTGGGACATGGCATAGACACCGA
* * *
33198328 TATGAGA-ACACCCATGTAAGACCATATCTGGGATATGGCAT
1 TATGAGAGGCCCCCA--TAAGACCATATCTGGGACATGGCAT
33198369 TGGTAGTACA
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
48 5 0.07
50 67 0.88
51 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.21
Consensus pattern (49 bp):
TATGAGAGGCCCCCATAAGACCATATCTGGGACATGGCATAGACACCGA
Found at i:33199310 original size:41 final size:41
Alignment explanation
Indices: 33199217--33199494 Score: 250
Period size: 41 Copynumber: 6.8 Consensus size: 41
33199207 TTTGTACCTT
* * * *
33199217 TCGGGGCTTTAGAGGCATTTTTAAAAAAAGTGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTT-CAAAAAGCGCCGCTAATGC
** ** * * *
33199259 TTAGATCTTTAGCGGCATTTTTGAAAAATCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
* * * *
33199300 TCGGGGCTTTAGCGACGTTTTTCAAGAAGCGTCGCTAATGG
1 TCGGGGCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
* *
33199341 TCGGGGCTTTAGTGGCGTTTTTCAAGAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
* * * * * * * * *
33199382 TCGTGCCTTTAACGGTGTATTTCAAGATGCGACACTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
* * *
33199423 TCGGGGCTTTACCGGCGTTTTCCAAAAAGCGCCGCTAATGA
1 TCGGGGCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
* * * *
33199464 TCGGGGCTTTACCGACATTTTCCAAAAAGCG
1 TCGGGGCTTTAGCGGCGTTTTTCAAAAAGCG
33199495 TTTTTGAAAA
Statistics
Matches: 191, Mismatches: 45, Indels: 1
0.81 0.19 0.00
Matches are distributed among these distances:
41 174 0.91
42 17 0.09
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (41 bp):
TCGGGGCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
Found at i:33199947 original size:14 final size:15
Alignment explanation
Indices: 33199918--33199950 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
33199908 AAGGTTTATA
33199918 GATTATGGAGTTAGG
1 GATTATGGAGTTAGG
33199933 GATTATGGA-TTAGG
1 GATTATGGAGTTAGG
33199947 GATT
1 GATT
33199951 CTAATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.36
Consensus pattern (15 bp):
GATTATGGAGTTAGG
Found at i:33200034 original size:21 final size:21
Alignment explanation
Indices: 33199983--33200024 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
33199973 AGGTTTATGA
*
33199983 GTTAG-GGATTAAGGGTTAGGG
1 GTTAGAGG-TTAAGAGTTAGGG
33200004 GTTAGAGGTTAAGAGTTAGGG
1 GTTAGAGGTTAAGAGTTAGGG
33200025 ATTTAAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.26, C:0.00, G:0.45, T:0.29
Consensus pattern (21 bp):
GTTAGAGGTTAAGAGTTAGGG
Found at i:33200223 original size:14 final size:15
Alignment explanation
Indices: 33200191--33200233 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
33200181 TATTAAATAA
*
33200191 GGTTTAGGGGTTAAT
1 GGTTTAGGGGTTAAG
*
33200206 GG-TTAGGGGTTAGG
1 GGTTTAGGGGTTAAG
33200220 GGTTTA-GGGTTAAG
1 GGTTTAGGGGTTAAG
33200234 AGTTAGTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.35
Consensus pattern (15 bp):
GGTTTAGGGGTTAAG
Found at i:33204973 original size:43 final size:43
Alignment explanation
Indices: 33204924--33205116 Score: 282
Period size: 43 Copynumber: 4.5 Consensus size: 43
33204914 AACGTACTTT
**
33204924 TAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGTCTA
* *
33204967 TAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGTCTA
* * *
33205010 TAG-TGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTGTA
1 TAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGTCTA
*
33205052 TAGCGGTGTTTGTGGGAAAAGCGCCA-CTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCG-CAGCTAAAGGTCATGGTCTA
*
33205095 TAGCAGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGGAAAAGC
33205117 ATCGCAAATC
Statistics
Matches: 135, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
42 38 0.28
43 96 0.71
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGTCTA
Found at i:33205046 original size:85 final size:86
Alignment explanation
Indices: 33204924--33205116 Score: 298
Period size: 85 Copynumber: 2.3 Consensus size: 86
33204914 AACGTACTTT
* **
33204924 TAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGCAAAAGC
1 TAGCAGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGCAAAAGC
*
33204989 GCCGCTAAAGGTCATGGTCTA
66 GCCACTAAAGGTCATGGTCTA
* * * * *
33205010 TAG-TGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTGTATAGCGGTGTTTGTGGGAAAAGC
1 TAGCAGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGCAAAAGC
33205074 GCCACTAAAGGTCATGGTCTA
66 GCCACTAAAGGTCATGGTCTA
33205095 TAGCAGCGTTTGTGGGAAAAGC
1 TAGCAGCGTTTGTGGGAAAAGC
33205117 ATCGCAAATC
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
85 77 0.79
86 20 0.21
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (86 bp):
TAGCAGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGCAAAAGC
GCCACTAAAGGTCATGGTCTA
Found at i:33219831 original size:79 final size:81
Alignment explanation
Indices: 33219695--33219879 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
33219685 TTGAATGATG
* *
33219695 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
33219759 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33219774 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33219836 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
33219854 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33219880 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:33219893 original size:40 final size:40
Alignment explanation
Indices: 33219696--33219879 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
33219686 TGAATGATGT
* * * *
33219696 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33219736 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33219776 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
33219814 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33219855 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33219880 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33219901 original size:79 final size:79
Alignment explanation
Indices: 33219748--33219912 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
33219738 GGACTAAGAT
* * **
33219748 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
33219813 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
33219827 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
33219890 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33219906 CCGAAGG
1 CCGAAGG
33219913 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:33227810 original size:79 final size:81
Alignment explanation
Indices: 33227674--33227858 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
33227664 TTGAATGATG
*
33227674 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33227738 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33227753 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33227815 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33227833 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33227859 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33227872 original size:40 final size:40
Alignment explanation
Indices: 33227675--33227858 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
33227665 TGAATGATGT
* * * *
33227675 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33227715 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33227755 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33227793 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33227834 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33227859 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33227880 original size:79 final size:79
Alignment explanation
Indices: 33227727--33227891 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
33227717 GGACTAAGAT
* **
33227727 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
33227792 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
33227806 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
33227869 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33227885 CCGAAGG
1 CCGAAGG
33227892 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:33230404 original size:850 final size:850
Alignment explanation
Indices: 33228764--33230461 Score: 3387
Period size: 850 Copynumber: 2.0 Consensus size: 850
33228754 TTAGGTTCTC
33228764 GTAAGACAGGACTAGAACGGTTTATGGATTCCCTGTTTCGACTTTGGAAATTCATTATAAATTAA
1 GTAAGACAGGACTAGAACGGTTTATGGATTCCCTGTTTCGACTTTGGAAATTCATTATAAATTAA
33228829 CCAGAGATAATTAGGAGTCATGCCATATATGTATAGATTCCTCTTTGAGTCTAGTTTCTATAGAA
66 CCAGAGATAATTAGGAGTCATGCCATATATGTATAGATTCCTCTTTGAGTCTAGTTTCTATAGAA
33228894 ACAAAGGACATCAGTATTGAAGCCCTGTACGGGGAGATATCCAAGACGTAATGCGCAAAGGTCAG
131 ACAAAGGACATCAGTATTGAAGCCCTGTACGGGGAGATATCCAAGACGTAATGCGCAAAGGTCAG
33228959 TGTAGTTGATCCCTGTAACATGGGAGATTTTGACTAATAAACTGTACTAATTTACGGAACTGGAT
196 TGTAGTTGATCCCTGTAACATGGGAGATTTTGACTAATAAACTGTACTAATTTACGGAACTGGAT
33229024 TCCGAGTTTCTGAACTCAAGATATGATTTTTAAAGCGACTAGTACGAAGATTGGTAGTGTCTGGG
261 TCCGAGTTTCTGAACTCAAGATATGATTTTTAAAGCGACTAGTACGAAGATTGGTAGTGTCTGGG
33229089 AAATTTTTTTTATAAGTGGTTTAAAGTCTGTTAACACCTCGTGTTCGACTCCGGTGACGGTCTCG
326 AAATTTTTTTTATAAGTGGTTTAAAGTCTGTTAACACCTCGTGTTCGACTCCGGTGACGGTCTCG
33229154 GGTTCGGGGTGTTACACGTACGGTACATTTGCATTTAGATGCATGCCATTTGGTTTATGTAATGC
391 GGTTCGGGGTGTTACACGTACGGTACATTTGCATTTAGATGCATGCCATTTGGTTTATGTAATGC
33229219 ACCTGCTACATTTCAAAGATGGATGATGTCTATTTTTACTGACATGGTTGAGAAATACTTGGAAG
456 ACCTGCTACATTTCAAAGATGGATGATGTCTATTTTTACTGACATGGTTGAGAAATACTTGGAAG
33229284 TCTTTATGGATGATTTTTCAGTATTTGGAGATACATATGATGATTGCCTAGCCAATCTCGCCAAG
521 TCTTTATGGATGATTTTTCAGTATTTGGAGATACATATGATGATTGCCTAGCCAATCTCGCCAAG
33229349 GTACTAAGGCGATGCGAAGAAACAAACCTCGTACTCAACTGGGAAAAGTGTCATTTCATGGTATG
586 GTACTAAGGCGATGCGAAGAAACAAACCTCGTACTCAACTGGGAAAAGTGTCATTTCATGGTATG
33229414 AAAAGGTATCGTTCTAGGGCATTGCATAACAAACATTGAATCAAGGTAAATAAAGCAAAAGTAGA
651 AAAAGGTATCGTTCTAGGGCATTGCATAACAAACATTGAATCAAGGTAAATAAAGCAAAAGTAGA
33229479 CGTTATTGAAAAACTCCCACCTCCAACACCTGTAAAGAGTGTTAGGAGCTTTTTGGGACAAGCCG
716 CGTTATTGAAAAACTCCCACCTCCAACACCTGTAAAGAGTGTTAGGAGCTTTTTGGGACAAGCCG
33229544 GCTTCTATCGAAGATTTATCAAAGACTTCTCCAAAATTGCTAAACCCTTATGCAAATTATTGGAG
781 GCTTCTATCGAAGATTTATCAAAGACTTCTCCAAAATTGCTAAACCCTTATGCAAATTATTGGAG
33229609 AAGTT
846 AAGTT
*
33229614 GTAAGACAGGGCTAGAACGGTTTATGGATTCCCTGTTTCGACTTTGGAAATTCATTATAAATTAA
1 GTAAGACAGGACTAGAACGGTTTATGGATTCCCTGTTTCGACTTTGGAAATTCATTATAAATTAA
33229679 CCAGAGATAATTAGGAGTCATGCCATATATGTATAGATTCCTCTTTGAGTCTAGTTTCTATAGAA
66 CCAGAGATAATTAGGAGTCATGCCATATATGTATAGATTCCTCTTTGAGTCTAGTTTCTATAGAA
33229744 ACAAAGGACATCAGTATTGAAGCCCTGTACGGGGAGATATCCAAGACGTAATGCGCAAAGGTCAG
131 ACAAAGGACATCAGTATTGAAGCCCTGTACGGGGAGATATCCAAGACGTAATGCGCAAAGGTCAG
33229809 TGTAGTTGATCCCTGTAACATGGGAGATTTTGACTAATAAACTGTACTAATTTACGGAACTGGAT
196 TGTAGTTGATCCCTGTAACATGGGAGATTTTGACTAATAAACTGTACTAATTTACGGAACTGGAT
33229874 TCCGAGTTTCTGAACTCAAGATATGATTTTTAAAGCGACTAGTACGAAGATTGGTAGTGTCTGGG
261 TCCGAGTTTCTGAACTCAAGATATGATTTTTAAAGCGACTAGTACGAAGATTGGTAGTGTCTGGG
33229939 AAATTTTTTTTATAAGTGGTTTAAAGTCTGTTAACACCTCGTGTTCGACTCCGGTGACGGTCTCG
326 AAATTTTTTTTATAAGTGGTTTAAAGTCTGTTAACACCTCGTGTTCGACTCCGGTGACGGTCTCG
33230004 GGTTCGGGGTGTTACACGTACGGTACATTTGCATTTAGATGCATGCCATTTGGTTTATGTAATGC
391 GGTTCGGGGTGTTACACGTACGGTACATTTGCATTTAGATGCATGCCATTTGGTTTATGTAATGC
33230069 ACCTGCTACATTTCAAAGATGGATGATGTCTATTTTTACTGACATGGTTGAGAAATACTTGGAAG
456 ACCTGCTACATTTCAAAGATGGATGATGTCTATTTTTACTGACATGGTTGAGAAATACTTGGAAG
33230134 TCTTTATGGATGATTTTTCAGTATTTGGAGATACATATGATGATTGCCTAGCCAATCTCGCCAAG
521 TCTTTATGGATGATTTTTCAGTATTTGGAGATACATATGATGATTGCCTAGCCAATCTCGCCAAG
33230199 GTACTAAGGCGATGCGAAGAAACAAACCTCGTACTCAACTGGGAAAAGTGTCATTTCATGGTATG
586 GTACTAAGGCGATGCGAAGAAACAAACCTCGTACTCAACTGGGAAAAGTGTCATTTCATGGTATG
33230264 AAAAGGTATCGTTCTAGGGCATTGCATAACAAACATTGAATCAAGGTAAATAAAGCAAAAGTAGA
651 AAAAGGTATCGTTCTAGGGCATTGCATAACAAACATTGAATCAAGGTAAATAAAGCAAAAGTAGA
33230329 CGTTATTGAAAAACTCCCACCTCCAACACCTGTAAAGAGTGTTAGGAGCTTTTTGGGACAAGCCG
716 CGTTATTGAAAAACTCCCACCTCCAACACCTGTAAAGAGTGTTAGGAGCTTTTTGGGACAAGCCG
33230394 GCTTCTATCGAAGATTTATCAAAGACTTCTCCAAAATTGCTAAACCCTTATGCAAATTATTGGAG
781 GCTTCTATCGAAGATTTATCAAAGACTTCTCCAAAATTGCTAAACCCTTATGCAAATTATTGGAG
33230459 AAG
846 AAG
33230462 GACATGACGT
Statistics
Matches: 847, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
850 847 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (850 bp):
GTAAGACAGGACTAGAACGGTTTATGGATTCCCTGTTTCGACTTTGGAAATTCATTATAAATTAA
CCAGAGATAATTAGGAGTCATGCCATATATGTATAGATTCCTCTTTGAGTCTAGTTTCTATAGAA
ACAAAGGACATCAGTATTGAAGCCCTGTACGGGGAGATATCCAAGACGTAATGCGCAAAGGTCAG
TGTAGTTGATCCCTGTAACATGGGAGATTTTGACTAATAAACTGTACTAATTTACGGAACTGGAT
TCCGAGTTTCTGAACTCAAGATATGATTTTTAAAGCGACTAGTACGAAGATTGGTAGTGTCTGGG
AAATTTTTTTTATAAGTGGTTTAAAGTCTGTTAACACCTCGTGTTCGACTCCGGTGACGGTCTCG
GGTTCGGGGTGTTACACGTACGGTACATTTGCATTTAGATGCATGCCATTTGGTTTATGTAATGC
ACCTGCTACATTTCAAAGATGGATGATGTCTATTTTTACTGACATGGTTGAGAAATACTTGGAAG
TCTTTATGGATGATTTTTCAGTATTTGGAGATACATATGATGATTGCCTAGCCAATCTCGCCAAG
GTACTAAGGCGATGCGAAGAAACAAACCTCGTACTCAACTGGGAAAAGTGTCATTTCATGGTATG
AAAAGGTATCGTTCTAGGGCATTGCATAACAAACATTGAATCAAGGTAAATAAAGCAAAAGTAGA
CGTTATTGAAAAACTCCCACCTCCAACACCTGTAAAGAGTGTTAGGAGCTTTTTGGGACAAGCCG
GCTTCTATCGAAGATTTATCAAAGACTTCTCCAAAATTGCTAAACCCTTATGCAAATTATTGGAG
AAGTT
Found at i:33243723 original size:16 final size:15
Alignment explanation
Indices: 33243692--33243725 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
33243682 ATAACTAGTA
*
33243692 TATAATTATATTAAT
1 TATAATTATATGAAT
33243707 TATAATATATATGAAT
1 TATAAT-TATATGAAT
33243723 TAT
1 TAT
33243726 TATCAATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
TATAATTATATGAAT
Found at i:33246561 original size:5 final size:5
Alignment explanation
Indices: 33246548--33246586 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
33246538 AATTCTTGTG
* *
33246548 AAAAA AAAAG AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
33246587 AAAGAGAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.85, C:0.13, G:0.03, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:33252601 original size:21 final size:21
Alignment explanation
Indices: 33252534--33252602 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
33252524 AAGTACAAAT
33252534 AGGGGCATGTATGTGCAATTC
1 AGGGGCATGTATGTGCAATTC
* * *
33252555 AGGGGTATCGTA-GTACAA-GC
1 AGGGGCAT-GTATGTGCAATTC
* *
33252575 AAGGGCATATATGTGCAATTC
1 AGGGGCATGTATGTGCAATTC
33252596 AGGGGCA
1 AGGGGCA
33252603 CCGTAGTACA
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
19 2 0.06
20 12 0.33
21 19 0.53
22 3 0.08
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.23
Consensus pattern (21 bp):
AGGGGCATGTATGTGCAATTC
Found at i:33252629 original size:41 final size:40
Alignment explanation
Indices: 33252525--33252720 Score: 155
Period size: 41 Copynumber: 4.8 Consensus size: 40
33252515 GAGGTACTGA
* *
33252525 AGTACAAATAGGGGCATGTATGTGCAATTCAGGGGTATCGT
1 AGTACAAATA-GGGCATGTATGTGCAATTCAGGGGCACCGT
*
33252566 AGTACAAGCA-AGGGCATATATGTGCAATTCAGGGGCACCGT
1 AGTACAA--ATAGGGCATGTATGTGCAATTCAGGGGCACCGT
* * * * * *
33252607 AGTACAAATAGGGTTATGTATGTACAATTTAGGTGTACTG-
1 AGTACAAATAGGG-CATGTATGTGCAATTCAGGGGCACCGT
* * * * * *
33252647 A-TGCGTAAATAGGAGCACGTATGTTCAATTTAGGGGTACCGA
1 AGTAC--AAATAGG-GCATGTATGTGCAATTCAGGGGCACCGT
*
33252689 AGTACAAATAGGGGCACGTATGTGCAATTCAG
1 AGTACAAATA-GGGCATGTATGTGCAATTCAG
33252721 CACTATAATT
Statistics
Matches: 126, Mismatches: 19, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
39 3 0.02
40 5 0.04
41 110 0.87
42 5 0.04
43 3 0.02
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTACAAATAGGGCATGTATGTGCAATTCAGGGGCACCGT
Found at i:33262993 original size:40 final size:40
Alignment explanation
Indices: 33262949--33263054 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
33262939 GATATTGAAA
* * *
33262949 TACAATCAGGGGCATGTATGTGCAAAGAGGGGTATCGAAG
1 TACAATCAGGGGCACGTATGTGCAAACAGGGGTACCGAAG
* * * *
33262989 TACAAACACGGGCACATATGAGCAAACAGGGGTACCGAAG
1 TACAATCAGGGGCACGTATGTGCAAACAGGGGTACCGAAG
*
33263029 TACAATTAGGGGCACGTATGTGCAAA
1 TACAATCAGGGGCACGTATGTGCAAA
33263055 TATTCAACAA
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.36, C:0.17, G:0.30, T:0.17
Consensus pattern (40 bp):
TACAATCAGGGGCACGTATGTGCAAACAGGGGTACCGAAG
Found at i:33270501 original size:11 final size:11
Alignment explanation
Indices: 33270485--33270517 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
33270475 ATCTGGAGAG
33270485 AGAGAACAATT
1 AGAGAACAATT
33270496 AGAGAACAATT
1 AGAGAACAATT
33270507 AGAGAACAATT
1 AGAGAACAATT
33270518 TTTTTCTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (11 bp):
AGAGAACAATT
Found at i:33287535 original size:39 final size:40
Alignment explanation
Indices: 33287440--33287701 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
33287430 TTGAATGATG
*
33287440 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
33287478 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
33287519 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
33287558 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
33287597 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
33287636 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
33287675 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
33287702 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:33299208 original size:40 final size:40
Alignment explanation
Indices: 33299159--33299348 Score: 186
Period size: 40 Copynumber: 4.8 Consensus size: 40
33299149 GAGTTATTGG
* * *
33299159 AGTATAAACAAGGGCACGTAAGTGCATTCAAGGGTACCAA
1 AGTACAAACAAGGGCACGTATGTGCATTCAAGGGTACCGA
* * * * *
33299199 AGTACAAACAAGGGTACTTATGTGTATTCAGGGGTATCGA
1 AGTACAAACAAGGGCACGTATGTGCATTCAAGGGTACCGA
* * * *
33299239 AGTACAATCAGGGGCACGTATCTGCATTTAAGGGTACCGA
1 AGTACAAACAAGGGCACGTATGTGCATTCAAGGGTACCGA
* * * *
33299279 AGTGCAAGTAGAA--GCACATATGTGCATTCAGGGGTACCGA
1 AGTACAA--ACAAGGGCACGTATGTGCATTCAAGGGTACCGA
* *
33299319 AGTACAATCAGGGGCACGTATGTGCATTCA
1 AGTACAAACAAGGGCACGTATGTGCATTCA
33299349 TTCAATAATT
Statistics
Matches: 116, Mismatches: 30, Indels: 8
0.75 0.19 0.05
Matches are distributed among these distances:
38 1 0.01
40 114 0.98
42 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.22
Consensus pattern (40 bp):
AGTACAAACAAGGGCACGTATGTGCATTCAAGGGTACCGA
Found at i:33304381 original size:32 final size:31
Alignment explanation
Indices: 33304339--33304521 Score: 138
Period size: 32 Copynumber: 5.7 Consensus size: 31
33304329 TACAACAATG
* *
33304339 TGATTGGCACAAAGCCATCAGTAGCAGTGACA
1 TGATCGGCACAAAGCCATCAGTAACAGT-ACA
* * ** * *
33304371 TGACCGGCACACAGCCATTTGTAATAGTGAAA
1 TGATCGGCACAAAGCCATCAGTAACAGT-ACA
* * *
33304403 TGACCAGCACACAA-CCATC-GATAACAGTAATA
1 TGATCGGCACA-AAGCCATCAG-TAACAGT-ACA
* *
33304435 TGATCAGCACAAAGCCATCAGTAATAGTACTA
1 TGATCGGCACAAAGCCATCAGTAACAGTAC-A
*
33304467 TGATCGGCACAAAGCCATCAGTAACGGTACTA
1 TGATCGGCACAAAGCCATCAGTAACAGTAC-A
*
33304499 TGATTGGCACACAA-CCATCAGTA
1 TGATCGGCACA-AAGCCATCAGTA
33304522 GCATCACAGC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
31 4 0.03
32 116 0.94
33 4 0.03
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (31 bp):
TGATCGGCACAAAGCCATCAGTAACAGTACA
Found at i:33304568 original size:26 final size:26
Alignment explanation
Indices: 33304528--33304577 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
33304518 AGTAGCATCA
* *
33304528 CAGCAAAGTTGCCAGCAACAGTATCG
1 CAGCAAAGCTACCAGCAACAGTATCG
* *
33304554 CAGCAAAGCTACCAGTAATAGTAT
1 CAGCAAAGCTACCAGCAACAGTAT
33304578 ATGTGGCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (26 bp):
CAGCAAAGCTACCAGCAACAGTATCG
Found at i:33304597 original size:27 final size:27
Alignment explanation
Indices: 33304556--33304628 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
33304546 CAGTATCGCA
* *
33304556 GCAAAGCTACCAGTAATAGT-ATATGTG
1 GCAAAGCCACCAGTAACAGTGAT-TGTG
* *
33304583 GCCAAGCCACTAGTAACAGTGATTGTG
1 GCAAAGCCACCAGTAACAGTGATTGTG
33304610 GCAAAGCCACCAGT-ACAGT
1 GCAAAGCCACCAGTAACAGT
33304629 ACTTCCTCCG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
26 5 0.13
27 32 0.82
28 2 0.05
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTGATTGTG
Found at i:33304726 original size:24 final size:23
Alignment explanation
Indices: 33304699--33304751 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
33304689 TCAGAATTAG
*
33304699 TCATTCAAATCACAGACAAATCAA
1 TCATTCAAA-CACAAACAAATCAA
* *
33304723 TCATACCAAACACAAACAAATCAG
1 TCAT-TCAAACACAAACAAATCAA
33304747 TCATT
1 TCATT
33304752 TACCCACAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.49, C:0.26, G:0.04, T:0.21
Consensus pattern (23 bp):
TCATTCAAACACAAACAAATCAA
Found at i:33304808 original size:27 final size:25
Alignment explanation
Indices: 33304740--33304813 Score: 64
Period size: 27 Copynumber: 2.9 Consensus size: 25
33304730 AAACACAAAC
33304740 AAATCAGTCATTTACCCACA--GACA
1 AAAT-AGTCATTTACCCACAGGGACA
* *
33304764 AAATAATCATTTGA-CCACGAGGGGCAA
1 AAATAGTCATTT-ACCCAC-AGGGAC-A
33304791 AAATAGTCATTTACCCACTAGGG
1 AAATAGTCATTTACCCAC-AGGG
33304814 CATTACGGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
23 11 0.28
24 6 0.15
26 3 0.08
27 20 0.50
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (25 bp):
AAATAGTCATTTACCCACAGGGACA
Found at i:33304848 original size:27 final size:27
Alignment explanation
Indices: 33304815--33305474 Score: 452
Period size: 27 Copynumber: 24.6 Consensus size: 27
33304805 CCACTAGGGC
*
33304815 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
33304842 ATTACGGTTAATTTACCCTACAGGCGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
33304869 ATTATGGTCATTTTACCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
*
33304896 ATTACGGTCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
33304923 ATTACGATCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * * * *
33304950 GTTACGATTATTTTACTCTATAGAGGG-
1 ATTACGGTCATTTTACCCTACAG-GGGT
* *
33304977 ATTACGATCATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
*
33305004 ATTACGGTCATTTTATCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
*
33305031 ATTACGGTCATTTTACCCTA-AAGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * * *
33305057 ATTACGATAATTTTACCCTA-TGCGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * * *
33305083 ATTTCAGT-ATTCTACCCTA-TGGGTGT
1 ATTACGGTCATTTTACCCTACAGGG-GT
** * ** *
33305109 ATTTTGGTTATTTTACCCTATGGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
33305136 ATTTCAGTCATTTTATCC-ATC-GAGGGT
1 ATTACGGTCATTTTACCCTA-CAG-GGGT
** * *
33305163 ATTTTGGTCATTTTACCC-ATC-GATGGA
1 ATTACGGTCATTTTACCCTA-CAG-GGGT
** *
33305190 ATTTTGGTCATTTGACCC-ATC-GAGGGT
1 ATTACGGTCATTTTACCCTA-CAG-GGGT
** * *
33305217 ATTTTGATCATTTGACCC-ATC-GAGGGT
1 ATTACGGTCATTTTACCCTA-CAG-GGGT
*** *
33305244 ATTTTAGTCATTTTACCC-ATCAAGGGT
1 ATTACGGTCATTTTACCCTA-CAGGGGT
* * **
33305271 ATTTCAGTCATTTTACCC-ATTGAGGGT
1 ATTACGGTCATTTTACCCTACAG-GGGT
**
33305298 ATTTTGGTCATTTTACCC-ATCAGGGGT
1 ATTACGGTCATTTTACCCTA-CAGGGGT
**
33305325 ATTTTGGTCATTTTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
33305352 ATTACAGTCATTTTACCCTATACGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
33305379 GTTATGGTCATTTTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
33305406 ATTACGATCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * * *
33305433 ATTATGGTCATTCTATCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
*
33305460 ATTACAGTCATTTTA
1 ATTACGGTCATTTTA
33305475 GAAATATTGG
Statistics
Matches: 533, Mismatches: 89, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
25 13 0.02
26 44 0.08
27 468 0.88
28 8 0.02
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAGGGGT
Found at i:33304903 original size:81 final size:81
Alignment explanation
Indices: 33304815--33305474 Score: 515
Period size: 81 Copynumber: 8.2 Consensus size: 81
33304805 CCACTAGGGC
* * * *
33304815 ATTACGGTCATTTTACCCTACAGGGGCATTACGGTTAATTTACCCTACAGGCGTATTATGGTCAT
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTATGGTCAT
*
33304880 TTTACCCTATAGGGGC
66 TTTACCCTATAGGGGT
* * * * * * *
33304896 ATTACGGTCATTTTACCCTATAGGGGTATTACGATCATTTTACCCTATAGGGGTGTTACGATTAT
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTATGGTCAT
*
33304961 TTTACTCTATAGAGGG-
66 TTTACCCTATAG-GGGT
* * * *
33304977 ATTACGATCATTTTACCCTACAAGGGTATTACGGTCATTTTATCCTACAGGGGTATTACGGTCAT
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTATGGTCAT
*
33305042 TTTACCCTA-AAGGGT
66 TTTACCCTATAGGGGT
* * * * * * * * * *
33305057 ATTACGATAATTTTACCCTA-TGCGGTATTTCAGT-ATTCTACCCTA-TGGGTGTATTTTGGTTA
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGG-GTATTATGGTCA
* *
33305119 TTTTACCCTATGGGGGC
65 TTTTACCCTATAGGGGT
* * * ** * * *
33305136 ATTTCAGTCATTTTATCC-ATC-GAGGGTATTTTGGTCATTTTACCC-ATC-GATGGAATTTTGG
1 ATTACGGTCATTTTACCCTA-CAG-GGGTATTACGGTCATTTTACCCTA-CAG-GGGTATTATGG
* *
33305197 TCATTTGACCC-ATCGAGGGT
62 TCATTTTACCCTATAG-GGGT
** * * *** * *
33305217 ATTTTGATCATTTGACCC-ATC-GAGGGTATTTTAGTCATTTTACCC-ATCAAGGGTATT-TCAG
1 ATTACGGTCATTTTACCCTA-CAG-GGGTATTACGGTCATTTTACCCTA-CAGGGGTATTAT-GG
*
33305278 TCATTTTACCC-ATTGAGGGT
62 TCATTTTACCCTATAG-GGGT
** ** **
33305298 ATTTTGGTCATTTTACCC-ATCAGGGGTATTTTGGTCATTTTACCCTACAGGGGTATTACAGTCA
1 ATTACGGTCATTTTACCCTA-CAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTATGGTCA
*
33305362 TTTTACCCTATACGGGT
65 TTTTACCCTATAGGGGT
* * * *
33305379 GTTATGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAGGGGTATTATGGTCAT
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTATGGTCAT
* *
33305444 TCTATCCTATAGGGGT
66 TTTACCCTATAGGGGT
*
33305460 ATTACAGTCATTTTA
1 ATTACGGTCATTTTA
33305475 GAAATATTGG
Statistics
Matches: 474, Mismatches: 86, Indels: 38
0.79 0.14 0.06
Matches are distributed among these distances:
77 3 0.01
78 29 0.06
79 29 0.06
80 34 0.07
81 370 0.78
82 9 0.02
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (81 bp):
ATTACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTATGGTCAT
TTTACCCTATAGGGGT
Found at i:33311076 original size:4 final size:4
Alignment explanation
Indices: 33311067--33311100 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
33311057 AAGTTTTATT
33311067 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
33311101 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:33311108 original size:22 final size:22
Alignment explanation
Indices: 33311050--33311109 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
33311040 AAGTGGCCCA
*
33311050 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
33311074 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
33311095 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
33311110 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:33319336 original size:27 final size:27
Alignment explanation
Indices: 33319305--33319482 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33319295 TAAATTGTAC
33319305 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33319332 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33319358 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33319386 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33319414 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33319441 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33319468 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33319483 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Done.