Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 109 of 126
Found at i:33319419 original size:82 final size:81
Alignment explanation
Indices: 33319306--33319461 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33319296 AAATTGTACA
* *
33319306 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33319370 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33319387 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33319452 TGCGAGTTGA
65 TGCGAATTGA
33319462 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33319473 original size:82 final size:81
Alignment explanation
Indices: 33319302--33319482 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33319292 GATTAAATTG
* *
33319302 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33319367 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33319383 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33319447 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33319465 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33319483 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33327399 original size:27 final size:27
Alignment explanation
Indices: 33327368--33327545 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33327358 TAAATTGTAC
33327368 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33327395 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33327421 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33327449 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33327477 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33327504 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33327531 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33327546 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33327482 original size:82 final size:81
Alignment explanation
Indices: 33327369--33327524 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33327359 AAATTGTACA
* *
33327369 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33327433 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33327450 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33327515 TGCGAGTTGA
65 TGCGAATTGA
33327525 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33327536 original size:82 final size:81
Alignment explanation
Indices: 33327365--33327545 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33327355 GATTAAATTG
* *
33327365 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33327430 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33327446 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33327510 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33327528 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33327546 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33338947 original size:100 final size:100
Alignment explanation
Indices: 33338778--33338961 Score: 269
Period size: 100 Copynumber: 1.8 Consensus size: 100
33338768 CATTGAGATT
* * * * * * **
33338778 ATGAGAGGTCTCGTGTAAGACCATGTTTGTGACATGGCGTTGGCACCGAGATGAGAGGTCCCATG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAGATGAGAGGTCCCACA
33338843 TAAGACCATGTCTGGGACACGACGTTGGCACCGAG
66 TAAGACCATGTCTGGGACACGACGTTGGCACCGAG
*
33338878 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAGATGAGAGGTCCCCCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAGATGAGAGGTCCCACA
* *
33338943 TAAGATCGTGTCTGGGACA
66 TAAGACCATGTCTGGGACA
33338962 TGGCATTGGT
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 73 1.00
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (100 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAGATGAGAGGTCCCACA
TAAGACCATGTCTGGGACACGACGTTGGCACCGAG
Found at i:33338961 original size:50 final size:50
Alignment explanation
Indices: 33338778--33338939 Score: 270
Period size: 50 Copynumber: 3.2 Consensus size: 50
33338768 CATTGAGATT
* * * * * *
33338778 ATGAGAGGTCTCGTGTAAGACCATGTTTGTGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAG
33338828 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAG
33338878 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAG
33338928 ATGAGAGGTCCC
1 ATGAGAGGTCCC
33338940 CCATAAGATC
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 106 1.00
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACACGACGTTGGCACCGAG
Found at i:33345174 original size:17 final size:17
Alignment explanation
Indices: 33345152--33345186 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
33345142 AAAGTTTAAG
33345152 GTCAAAATTGTAATTTT
1 GTCAAAATTGTAATTTT
33345169 GTCAAAATTGTAATTTT
1 GTCAAAATTGTAATTTT
33345186 G
1 G
33345187 ATGAATGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (17 bp):
GTCAAAATTGTAATTTT
Found at i:33345615 original size:50 final size:50
Alignment explanation
Indices: 33345504--33345701 Score: 155
Period size: 50 Copynumber: 3.8 Consensus size: 50
33345494 ATTTGGGTAA
* * * * *
33345504 AGAGATCCCATGTAGGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATGGGCACCA---A-A--ATG
* * *
33345560 AGAGGTCCCATGTAAGACCATGTTTAGGACATGGCGTTGGCACCAAAATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATGGGCACCAAAATG
* * * *
33345610 AGAGGTCCC-TCGTAACACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCAT-GTAAGACCATGTCTAGGACATGGCATGGGCACCAAAATG
** * * * * *
33345660 AGAACTCTCATGTAAGACCATATCTTGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATGGGCA
33345702 GTACAAGAAA
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 1 0.01
50 76 0.64
51 1 0.01
52 1 0.01
53 1 0.01
56 39 0.33
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATGGGCACCAAAATG
Found at i:33347237 original size:27 final size:27
Alignment explanation
Indices: 33347199--33347252 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
33347189 CGTCCTCATG
33347199 CTACAAGAAAACAAATTGGGAACTTTA
1 CTACAAGAAAACAAATTGGGAACTTTA
33347226 CTACAAGAAAACAAATTGGGAACTTTA
1 CTACAAGAAAACAAATTGGGAACTTTA
33347253 ATCTTTCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (27 bp):
CTACAAGAAAACAAATTGGGAACTTTA
Found at i:33350422 original size:13 final size:13
Alignment explanation
Indices: 33350404--33350433 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
33350394 CAGGTTTGAA
33350404 ACAATTTAATCAC
1 ACAATTTAATCAC
33350417 ACAATTTAATCAC
1 ACAATTTAATCAC
33350430 ACAA
1 ACAA
33350434 ATCGGGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (13 bp):
ACAATTTAATCAC
Found at i:33351987 original size:27 final size:27
Alignment explanation
Indices: 33351970--33352489 Score: 480
Period size: 27 Copynumber: 19.3 Consensus size: 27
33351960 GGGTATAACA
33351970 GTCATTTTACCCTATA-GGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
33351996 GTCCTTTTACCCTA-CGAGGGTATTTCA
1 GTCATTTTACCCTATAG-GGGTATTTCG
* ** *
33352023 GTCATTTTACCTTACGGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCG
*
33352050 GTCATTTTACCTTAT-GGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
33352076 ATCATTTTACCTTACT-GGGTTATTTCG
1 GTCATTTTACCCTA-TAGGGGTATTTCG
* * *
33352103 ATCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
33352130 GTCATTTTACCTTACAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
33352157 GTCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTCG
* *
33352184 GTCATTTTACCCTA-CGAGGTTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTCG
* * *
33352211 ATCATTTTACCTTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
33352238 GTCATTTTACCCTTTAGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
33352265 ATCATTTTACTCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * * **
33352292 ATCATTTTACCTTATAAGGGTATTTTT
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
33352319 GTCATTTTACCCTACAGGGCTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * ** *
33352346 TTAATTTTACCCTACGGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCG
* * **
33352373 ATCATTTTACGCTACGGGGGTATTTTC-
1 GTCATTTTACCCTATAGGGGTA-TTTCG
* *
33352400 GTCATTTTACCCTATGGGGGTACTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * **
33352427 GTCACTTTACCCTA-CGGGGATATTTTT
1 GTCATTTTACCCTATAGGGG-TATTTCG
*
33352454 GTCATTTTACCCTACAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
33352481 GTCATTTTA
1 GTCATTTTA
33352490 TTGACCTCAC
Statistics
Matches: 412, Mismatches: 70, Indels: 23
0.82 0.14 0.05
Matches are distributed among these distances:
26 45 0.11
27 357 0.87
28 10 0.02
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:33352190 original size:81 final size:81
Alignment explanation
Indices: 33351970--33352489 Score: 559
Period size: 81 Copynumber: 6.4 Consensus size: 81
33351960 GGGTATAACA
* * * * *
33351970 GTCATTTTACCCTATA-GGGTATTTCGGTCCTTTTACCCTACGAGGGTATTTCAGTCATTTTACC
1 GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACC
* *
33352034 TTACGGGGGTATTTCA
66 CTACGGGGGTATTTCG
* * * * *
33352050 GTCATTTTACCTTA-TGGGGTATTTCGATCATTTTACCTTACTG-GGTTATTTCGATCATTTTAC
1 GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTA-TGAGGGTATTTCGGTCATTTTAC
* *
33352113 CCTATGGGGGTATTTTG
65 CCTACGGGGGTATTTCG
33352130 GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACC
* *
33352195 CTACGAGGTTATTTCG
66 CTACGGGGGTATTTCG
* * * * **
33352211 ATCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCT-TTAGGGGTATTTCAATCATTTTAC
1 GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGA-GGGTATTTCGGTCATTTTAC
* *
33352275 TCTATGGGGGTATTTCG
65 CCTACGGGGGTATTTCG
* * * ** * * * *
33352292 ATCATTTTACCTTATAAGGGTATTTTTGTCATTTTACCCTA-CAGGGCTATTTTGTTAATTTTAC
1 GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGAGGG-TATTTCGGTCATTTTAC
*
33352356 CCTACGGGGGTATTTCA
65 CCTACGGGGGTATTTCG
* * * * *
33352373 ATCATTTTACGC-TACGGGGGTATTTTC-GTCATTTTACCCTATGGGGGTACTTCGGTCACTTTA
1 GTCATTTTAC-CTTACAGGGGTA-TTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTA
* **
33352436 CCCTACGGGGATATTTTT
64 CCCTACGGGGGTATTTCG
*
33352454 GTCATTTTACCCTACAGGGGTATTTCGGTCATTTTA
1 GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTA
33352490 TTGACCTCAC
Statistics
Matches: 370, Mismatches: 58, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
80 90 0.24
81 273 0.74
82 7 0.02
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACC
CTACGGGGGTATTTCG
Found at i:33365925 original size:50 final size:50
Alignment explanation
Indices: 33365823--33366062 Score: 171
Period size: 50 Copynumber: 4.7 Consensus size: 50
33365813 GGGAATGAGA
* * *
33365823 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTAAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGC---ACTGA-G--ATGAGAGG
**
33365879 TCTGATGTAAGACCATGTCTAGGACATGGCATTGGCACTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACTGAGATGAGAGG
** * * * **
33365929 TCCCCCGTAAGACCATGTCCAGGATATGGCA-TGCGCACTGATATGAGAAC
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTG-GCACTGAGATGAGAGG
* ** * * * * * *
33365979 TCCCATGTAAGACTACATCTAGGATATGTG-ATTGGCAGT-AAAGGAAATG
1 TCCCATGTAAGACCATGTCTAGGACATG-GCATTGGCACTGAGATGAGAGG
* * *
33366028 TCCCATGTAGGACCATGTCTGGGACATGGCTTTGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGG
33366063 TATGTTGTTA
Statistics
Matches: 147, Mismatches: 33, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
48 1 0.01
49 33 0.22
50 73 0.50
51 3 0.02
52 1 0.01
53 3 0.02
56 33 0.22
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACTGAGATGAGAGG
Found at i:33366292 original size:20 final size:20
Alignment explanation
Indices: 33366267--33366305 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33366257 TGAGTTATTT
33366267 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
33366287 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
33366306 AGAAACAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:33373990 original size:20 final size:20
Alignment explanation
Indices: 33373965--33374013 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
33373955 TGAGGTATTT
*
33373965 AAGTAAGCAAGTTAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
33373985 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
33374005 AAG-AAGCAA
1 AAGTAAGCAA
33374014 AGACCATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.55, C:0.06, G:0.24, T:0.14
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:33382083 original size:30 final size:30
Alignment explanation
Indices: 33382042--33382120 Score: 131
Period size: 30 Copynumber: 2.6 Consensus size: 30
33382032 CTAGGCCTGG
*
33382042 GCCCTATACAGTAACAGTGTGTGGGCCATA
1 GCCCAATACAGTAACAGTGTGTGGGCCATA
* *
33382072 GCCCAATACAGTAACAGAGTGTGGGCCTTA
1 GCCCAATACAGTAACAGTGTGTGGGCCATA
33382102 GCCCAATACAGTAACAGTG
1 GCCCAATACAGTAACAGTG
33382121 CAAATGCAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.20
Consensus pattern (30 bp):
GCCCAATACAGTAACAGTGTGTGGGCCATA
Found at i:33382316 original size:26 final size:25
Alignment explanation
Indices: 33382225--33382327 Score: 89
Period size: 26 Copynumber: 4.0 Consensus size: 25
33382215 ACACCAATAT
*
33382225 CGCAACAAAGCTGGCAATAATAGTAA
1 CGCAACAAAGCTGTC-ATAATAGTAA
* * *
33382251 CGCAGCAAAGTTGCCACTAATAGTAA
1 CGCAACAAAGCTGTCA-TAATAGTAA
* * * *
33382277 GGCAGCAGAGCTGTCATTATCAGTAA
1 CGCAACAAAGCTGTCATAAT-AGTAA
*
33382303 CGCAACAAAGCTGTCAGTAACAGTA
1 CGCAACAAAGCTGTCA-TAATAGTA
33382328 TTTGTAGCAA
Statistics
Matches: 61, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
25 4 0.07
26 55 0.90
27 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (25 bp):
CGCAACAAAGCTGTCATAATAGTAA
Found at i:33382537 original size:27 final size:27
Alignment explanation
Indices: 33382520--33383319 Score: 192
Period size: 27 Copynumber: 29.3 Consensus size: 27
33382510 GGGTATAACG
33382520 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCA
* * *
33382547 GTAATTTTA-CCTATCGAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTCA
* *
33382574 GCCATTTTACCCT-TCGGGGGTATTTCA
1 GTCATTTTACCCTAT-AGGGGTATTTCA
*
33382601 GTCATTTTACCC-ATCAAGGGTATTTCTA
1 GTCATTTTACCCTAT-AGGGGTATTTC-A
* * *
33382629 -TAATTTTACAC-ATTGAGGGTATTTC-
1 GTCATTTTACCCTATAG-GGGTATTTCA
* * *
33382654 GTTAATTTTACCCT-TCGGGGGATTTCA
1 G-TCATTTTACCCTATAGGGGTATTTCA
* * * *
33382681 ATAATTTTACCC-ATCAAGGGTATTTTA
1 GTCATTTTACCCTAT-AGGGGTATTTCA
* * *
33382708 GTAATTTTACCC-ATCGAGGGTATTT-T
1 GTCATTTTACCCTATAG-GGGTATTTCA
* * * * *
33382734 GATAATTTTACCCT-TCGACGATATTT-T
1 G-TCATTTTACCCTATAG-GGGTATTTCA
* *
33382761 GATAATTTTACCC-ATCGAGGGTATTTC-
1 G-TCATTTTACCCTATAG-GGGTATTTCA
* *
33382788 GATAATTTTACCC-ATCAAGGGTATTTCA
1 G-TCATTTTACCCTAT-AGGGGTATTTCA
* *
33382816 ATCATTTTACCC-ATCGAGGGTATTTC-
1 GTCATTTTACCCTATAG-GGGTATTTCA
** *
33382842 GATCATTTTAAAC-ATCGAGGGTATTTC-
1 G-TCATTTTACCCTATAG-GGGTATTTCA
* * *
33382869 GATAATTTTAGTTACTTTACCCA-ACGAGGCTATTTCA
1 G-TCA--TT--TTAC----CCTATA-G-GGGTATTTCA
* * **
33382906 GTTATTTTACCC-ATCGAGGGTATTTTG
1 GTCATTTTACCCTATAG-GGGTATTTCA
* *
33382933 GTCATTTCACCCGT-T-GAGGGTATTTTA
1 GTCATTTTACCC-TATAG-GGGTATTTCA
* * **
33382960 GTTATTTTAACC-ATTAGGGGTATTTTG
1 GTCATTTTACCCTA-TAGGGGTATTTCA
* *
33382987 GTAATTTTACCC-ATCGAGGGTATTTCA
1 GTCATTTTACCCTATAG-GGGTATTTCA
* * *
33383014 GTAATTTAACCC-ATCGAGGGTATTTC-
1 GTCATTTTACCCTATAG-GGGTATTTCA
* * *
33383040 GATAATTTTACCC-ATCGGGGGTATTTTA
1 G-TCATTTTACCCTAT-AGGGGTATTTCA
*
33383068 GTCATTTTACCC-ATCGAGGGTATTTC-
1 GTCATTTTACCCTATAG-GGGTATTTCA
* *
33383094 GATCAATTTACCC-ATCGAGGGTATTTC-
1 G-TCATTTTACCCTATAG-GGGTATTTCA
* *
33383121 GATAATTTTACCC-ATCAAGGGTATTTTC-
1 G-TCATTTTACCCTAT-AGGGGTA-TTTCA
* * *
33383149 GTAATTTTACCC-ATCGATGGTATTTC-
1 GTCATTTTACCCTATAG-GGGTATTTCA
* *
33383175 GATAATTTTACCC-ATCGGGGGTATTTC-
1 G-TCATTTTACCCTAT-AGGGGTATTTCA
* *
33383202 GATAATTTTACCC-ATCGAGGGTATTTCA
1 G-TCATTTTACCCTATAG-GGGTATTTCA
*
33383230 GTCATTTTACCC-ATCGAGGGTATTTCA
1 GTCATTTTACCCTATAG-GGGTATTTCA
* * *
33383257 GT-ATTTTTAGCC-ATCGAAGGTATTTCA
1 GTCA-TTTTACCCTATAG-GGGTATTTCA
* *
33383284 ATCATTTTACCC-ATCGAGGGTATTTCA
1 GTCATTTTACCCTATAG-GGGTATTTCA
33383311 GTCATTTTA
1 GTCATTTTA
33383320 GACGTTGATT
Statistics
Matches: 634, Mismatches: 86, Indels: 106
0.77 0.10 0.13
Matches are distributed among these distances:
26 39 0.06
27 550 0.87
28 19 0.03
29 2 0.00
31 3 0.00
32 4 0.01
34 2 0.00
35 1 0.00
36 13 0.02
37 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCA
Found at i:33382594 original size:54 final size:53
Alignment explanation
Indices: 33382523--33383319 Score: 747
Period size: 54 Copynumber: 14.6 Consensus size: 53
33382513 TATAACGGTC
* * ****
33382523 ATTTTACCCTATAG-GGGTATTTCAGTAATTTTACCTATCGAGGGTATTTCGGCC
1 ATTTTACCC-ATCGAGGGTATTTC-GTAATTTTACCCATCGAGGGTATTTCAATA
* * * * *
33382577 ATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCATCAAGGGTATTTCTATA
1 ATTTTACCCATCGAGGGTATTTC-GTAATTTTACCCATCGAGGGTATTTCAATA
* * * *
33382631 ATTTTACACATTGAGGGTATTTCGTTAATTTTACCCTTCG-GGGGATTTCAATA
1 ATTTTACCCATCGAGGGTATTTCG-TAATTTTACCCATCGAGGGTATTTCAATA
* * **
33382684 ATTTTACCCATCAAGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTTGATA
1 ATTTTACCCATCGAGGGTA-TTTCGTAATTTTACCCATCGAGGGTATTTCAATA
* * * * *
33382738 ATTTTACCCTTCGACGATATTTTGATAATTTTACCCATCGAGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCG-TAATTTTACCCATCGAGGGTATTTCAATA
* * * * *
33382792 ATTTTACCCATCAAGGGTATTTCAATCATTTTACCCATCGAGGGTATTTCGATC
1 ATTTTACCCATCGAGGGTATTTC-GTAATTTTACCCATCGAGGGTATTTCAATA
** * * * *
33382846 ATTTTAAACATCGAGGGTATTTCGATAATTTTAGTTACTTTACCCAACGAGGCTATTTCAGTT
1 ATTTTACCCATCGAGGGTATTTCG-T-A----A--T--TTTACCCATCGAGGGTATTTCAATA
* * * * * * * *
33382909 ATTTTACCCATCGAGGGTATTTTGGTCATTTCACCCGTTGAGGGTATTTTAGTT
1 ATTTTACCCATCGAGGGTA-TTTCGTAATTTTACCCATCGAGGGTATTTCAATA
* * * *
33382963 ATTTTAACCAT-TAGGGGTATTTTGGTAATTTTACCCATCGAGGGTATTTCAGTA
1 ATTTTACCCATCGA-GGGTA-TTTCGTAATTTTACCCATCGAGGGTATTTCAATA
* * * * *
33383017 ATTTAACCCATCGAGGGTATTTCGATAATTTTACCCATCGGGGGTATTTTAGTC
1 ATTTTACCCATCGAGGGTATTTCG-TAATTTTACCCATCGAGGGTATTTCAATA
*
33383071 ATTTTACCCATCGAGGGTATTTCGATCAA-TTTACCCATCGAGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCG-T-AATTTTACCCATCGAGGGTATTTCAATA
* * *
33383125 ATTTTACCCATCAAGGGTATTTTCGTAATTTTACCCATCGATGGTATTTCGATA
1 ATTTTACCCATCGAGGGTA-TTTCGTAATTTTACCCATCGAGGGTATTTCAATA
* * *
33383179 ATTTTACCCATCGGGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTC
1 ATTTTACCCATCGAGGGTATTTCG-TAATTTTACCCATCGAGGGTATTTCAATA
* * * *
33383233 ATTTTACCCATCGAGGGTATTTCAGTATTTTTAGCCATCGAAGGTATTTCAATC
1 ATTTTACCCATCGAGGGTATTTC-GTAATTTTACCCATCGAGGGTATTTCAATA
*
33383287 ATTTTACCCATCGAGGGTATTTCAGTCATTTTA
1 ATTTTACCCATCGAGGGTATTTC-GTAATTTTA
33383320 GACGTTGATT
Statistics
Matches: 622, Mismatches: 96, Indels: 50
0.81 0.12 0.07
Matches are distributed among these distances:
53 60 0.10
54 507 0.82
55 9 0.01
56 1 0.00
58 1 0.00
59 1 0.00
61 1 0.00
63 38 0.06
64 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (53 bp):
ATTTTACCCATCGAGGGTATTTCGTAATTTTACCCATCGAGGGTATTTCAATA
Found at i:33382633 original size:81 final size:81
Alignment explanation
Indices: 33382520--33383319 Score: 791
Period size: 81 Copynumber: 9.8 Consensus size: 81
33382510 GGGTATAACG
* * * *
33382520 GTCATTTTACCCTATAG-GGGTATTTC-AGTAATTTTACCTATCGAGGGTATTTCGGCCATTTTA
1 GTCATTTTACCC-ATCGAGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTCAGTCATTTTA
* *
33382583 CCCTTCGGGGGTATTTCA
64 CCCATCGAGGGTATTTCA
* * * * *
33382601 GTCATTTTACCCATCAAGGGTATTTCTATAATTTTACACATTGAGGGTATTTC-GTTAATTTTAC
1 GTCATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAG-TCATTTTAC
* *
33382665 CCTTCG-GGGGATTTCA
65 CCATCGAGGGTATTTCA
* * * * * *
33382681 ATAATTTTACCCATCAAGGGTATTT-TAGTAATTTTACCCATCGAGGGTATTT-TGATAATTTTA
1 GTCATTTTACCCATCGAGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTCAG-TCATTTTA
* * * *
33382744 CCCTTCGACGATATTT-T
64 CCCATCGAGGGTATTTCA
* * *
33382761 GATAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCAAGGGTATTTCAATCATTTTAC
1 G-TCATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTTTAC
33382826 CCATCGAGGGTATTTC-
65 CCATCGAGGGTATTTCA
** * *
33382842 GATCATTTTAAACATCGAGGGTATTTCGATAATTTTAGTTACTTTACCCAACGAGGCTATTTCAG
1 G-TCATTTTACCCATCGAGGGTATTTCGAT-A----A--T--TTTACCCATCGAGGGTATTTCAG
* **
33382907 TTATTTTACCCATCGAGGGTATTTTG
56 TCATTTTACCCATCGAGGGTATTTCA
* * * * * * * ** *
33382933 GTCATTTCACCCGTTGAGGGTATTT-TAGTTATTTTAACCAT-TAGGGGTATTTTGGTAATTTTA
1 GTCATTTTACCCATCGAGGGTATTTCGA-TAATTTTACCCATCGA-GGGTATTTCAGTCATTTTA
33382996 CCCATCGAGGGTATTTCA
64 CCCATCGAGGGTATTTCA
* * * *
33383014 GTAATTTAACCCATCGAGGGTATTTCGATAATTTTACCCATCGGGGGTATTTTAGTCATTTTACC
1 GTCATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTTTACC
33383079 CATCGAGGGTATTTC-
66 CATCGAGGGTATTTCA
* * *
33383094 GATCAATTTACCCATCGAGGGTATTTCGATAATTTTACCCATCAAGGGTATTTTC-GTAATTTTA
1 G-TCATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTA-TTTCAGTCATTTTA
*
33383158 CCCATCGATGGTATTTC-
64 CCCATCGAGGGTATTTCA
* *
33383175 GATAATTTTACCCATCGGGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTTTAC
1 G-TCATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTTTAC
33383240 CCATCGAGGGTATTTCA
65 CCATCGAGGGTATTTCA
* * * *
33383257 GT-ATTTTTAGCCATCGAAGGTATTTCAATCATTTTACCCATCGAGGGTATTTCAGTCATTTTA
1 GTCA-TTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTTTA
33383320 GACGTTGATT
Statistics
Matches: 608, Mismatches: 82, Indels: 58
0.81 0.11 0.08
Matches are distributed among these distances:
79 2 0.00
80 80 0.13
81 450 0.74
82 8 0.01
83 1 0.00
85 1 0.00
86 1 0.00
88 1 0.00
89 1 0.00
90 62 0.10
91 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (81 bp):
GTCATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAGTCATTTTACC
CATCGAGGGTATTTCA
Found at i:33386461 original size:27 final size:27
Alignment explanation
Indices: 33386430--33386752 Score: 278
Period size: 27 Copynumber: 11.8 Consensus size: 27
33386420 ACCCCAAAAT
*
33386430 AGGTAGAATGACCGAAATACCCCTATA
1 AGGTAAAATGACCGAAATACCCCTATA
* *
33386457 AGGTAAAATAACCGAAATA-CCTTATA
1 AGGTAAAATGACCGAAATACCCCTATA
* * ** *
33386483 GGGTTAAATGACTAAAATACCTCTATA
1 AGGTAAAATGACCGAAATACCCCTATA
*
33386510 AGGTAAAATGACTGAAATACCCCTATA
1 AGGTAAAATGACCGAAATACCCCTATA
**
33386537 AGGTAAAATGACTAAAATACCCCTATA
1 AGGTAAAATGACCGAAATACCCCTATA
* * * *
33386564 GGGTAAAATGACCAAAATACCCTTGTA
1 AGGTAAAATGACCGAAATACCCCTATA
* * *
33386591 GGGTAAAATGACTGAAATA-CCCTCGTA
1 AGGTAAAATGACCGAAATACCCCT-ATA
* **
33386618 GGGTAAAATGACCGAAATACCCCCGT-
1 AGGTAAAATGACCGAAATACCCCTATA
* * *
33386644 AGTGTAAAATGACTGAAATACCACTGTA
1 AG-GTAAAATGACCGAAATACCCCTATA
* *
33386672 GGGTAAAATGACCGAAATACCCCCTCCCCGT-
1 AGGTAAAATGACCGAAATA-CCCCT----ATA
*
33386703 AGGATAAAATGACCGAAATACCACC-GTA
1 AGG-TAAAATGACCGAAATACC-CCTATA
*
33386731 AGGTAAAATGACCAAAATACCC
1 AGGTAAAATGACCGAAATACCC
33386753 TCCTAGGGTA
Statistics
Matches: 250, Mismatches: 33, Indels: 27
0.81 0.11 0.09
Matches are distributed among these distances:
26 25 0.10
27 190 0.76
28 11 0.04
31 4 0.02
32 20 0.08
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
AGGTAAAATGACCGAAATACCCCTATA
Found at i:33386601 original size:81 final size:82
Alignment explanation
Indices: 33386431--33386766 Score: 339
Period size: 81 Copynumber: 4.1 Consensus size: 82
33386421 CCCCAAAATA
* * * *
33386431 GGTAGAATGACCGAAATACCCCT-ATAAGGTAAAATAACCGAAATA-CCTTATAGGGTTAAATGA
1 GGTAAAATGACCGAAATACCCCTCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGA
* * *
33386494 CTAAAATA-CCTCTATAA
66 CCAAAATACCCT-TGTAG
* **
33386511 GGTAAAATGACTGAAATACCCCT-ATAAGGTAAAATGACTAAAATACCCCTATAGGGTAAAATGA
1 GGTAAAATGACCGAAATACCCCTCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGA
33386575 CCAAAATACCCTTGTAG
66 CCAAAATACCCTTGTAG
* * * ** *
33386592 GGTAAAATGACTGAAATA-CCCTCGTAGGGTAAAATGACCGAAATACCCCCGTAGTGTAAAATGA
1 GGTAAAATGACCGAAATACCCCTCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGA
**
33386656 CTGAAATACCAC-TGTAG
66 CCAAAATACC-CTTGTAG
*
33386673 GGTAAAATGACCGAAATACCCCCTCCCCGT-AGGATAAAATGACCGAAATACCACCGTA-A-GGT
1 GGTAAAATGACCGAAATA-CCCCT---CATAAGG-TAAAATGACCGAAATACC-CC-TATAGGGT
**
33386735 AAAATGACCAAAATACCCTCCTAG
59 AAAATGACCAAAATACCCTTGTAG
33386759 GGTAAAAT
1 GGTAAAAT
33386767 AACTATTATA
Statistics
Matches: 215, Mismatches: 28, Indels: 20
0.82 0.11 0.08
Matches are distributed among these distances:
80 44 0.20
81 108 0.50
82 4 0.02
83 4 0.02
85 3 0.01
86 49 0.23
87 3 0.01
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (82 bp):
GGTAAAATGACCGAAATACCCCTCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGA
CCAAAATACCCTTGTAG
Found at i:33386695 original size:54 final size:54
Alignment explanation
Indices: 33386431--33386766 Score: 318
Period size: 54 Copynumber: 6.1 Consensus size: 54
33386421 CCCCAAAATA
* * * * ***
33386431 GGTAGAATGACCGAAATACCCCTATAAGGTAAAATAACCGAAATA-CCTTATAG
1 GGTAAAATGACTGAAATACCACTATAAGGTAAAATGACCGAAATACCCCCGTAG
* * * * ** *
33386484 GGTTAAATGACTAAAATACCTCTATAAGGTAAAATGACTGAAATACCCCTATAA
1 GGTAAAATGACTGAAATACCACTATAAGGTAAAATGACCGAAATACCCCCGTAG
* * * * **
33386538 GGTAAAATGACTAAAATACCCCTATAGGGTAAAATGACCAAAATACCCTTGTAG
1 GGTAAAATGACTGAAATACCACTATAAGGTAAAATGACCGAAATACCCCCGTAG
* *
33386592 GGTAAAATGACTGAAATACC-CTCGTAGGGTAAAATGACCGAAATACCCCCGTAG
1 GGTAAAATGACTGAAATACCACT-ATAAGGTAAAATGACCGAAATACCCCCGTAG
* * *
33386646 TGTAAAATGACTGAAATACCACTGTAGGGTAAAATGACCGAAATACCCCCTCCCCGTAG
1 GGTAAAATGACTGAAATACCACTATAAGGTAAAATGACCGAAATA----C-CCCCGTAG
* * ** *
33386705 GATAAAATGACCGAAATACCACCGTAAGGTAAAATGACCAAAATACCCTCC-TAG
1 GGTAAAATGACTGAAATACCACTATAAGGTAAAATGACCGAAATACCC-CCGTAG
33386759 GGTAAAAT
1 GGTAAAAT
33386767 AACTATTATA
Statistics
Matches: 244, Mismatches: 30, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
53 40 0.16
54 151 0.62
55 5 0.02
58 1 0.00
59 47 0.19
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (54 bp):
GGTAAAATGACTGAAATACCACTATAAGGTAAAATGACCGAAATACCCCCGTAG
Found at i:33387163 original size:28 final size:28
Alignment explanation
Indices: 33387119--33387173 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
33387109 TGCACTGTAC
33387119 TGTTACTGTATTAGGCTAAGGCCCACAT
1 TGTTACTGTATTAGGCTAAGGCCCACAT
* *
33387147 TGTTATTGTATTGGGCTAAGGCCCACA
1 TGTTACTGTATTAGGCTAAGGCCCACA
33387174 ACTGCAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (28 bp):
TGTTACTGTATTAGGCTAAGGCCCACAT
Found at i:33395722 original size:41 final size:41
Alignment explanation
Indices: 33395643--33395723 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
33395633 TTGCGAGCTG
* *
33395643 TACAGAGAAGAACATTCATTATGGTTATTAATCCAGAGTTC
1 TACAGAGAAGAACATTCATTATGGCTATTAATACAGAGTTC
*
33395684 TACAGAGAAGAACGA-TCATTATGGCTATTAATATAGAGTT
1 TACAGAGAAGAAC-ATTCATTATGGCTATTAATACAGAGTT
33395724 TTGTAGACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 35 0.97
42 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (41 bp):
TACAGAGAAGAACATTCATTATGGCTATTAATACAGAGTTC
Found at i:33402316 original size:11 final size:11
Alignment explanation
Indices: 33402300--33402337 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
33402290 TCCTTCATTC
33402300 ATCATCCCTCA
1 ATCATCCCTCA
33402311 ATCATCCCTCA
1 ATCATCCCTCA
*
33402322 ATCATTCCTCA
1 ATCATCCCTCA
*
33402333 TTCAT
1 ATCAT
33402338 TCTCATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.26, C:0.39, G:0.00, T:0.34
Consensus pattern (11 bp):
ATCATCCCTCA
Found at i:33402338 original size:11 final size:11
Alignment explanation
Indices: 33402286--33402354 Score: 52
Period size: 11 Copynumber: 6.1 Consensus size: 11
33402276 TAAGACCCTC
33402286 TCATTCCTTCAT
1 TCATTCC-TCAT
*
33402298 TCATCATCCCTCAA
1 TCAT--T-CCTCAT
* *
33402312 TCATCCCTCAA
1 TCATTCCTCAT
33402323 TCATTCCTCAT
1 TCATTCCTCAT
33402334 TCATT-CTCA-
1 TCATTCCTCAT
*
33402343 TCATTCATCAT
1 TCATTCCTCAT
33402354 T
1 T
33402355 TTCTTTTTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.11
10 7 0.15
11 21 0.45
12 4 0.09
14 8 0.17
15 2 0.04
ACGTcount: A:0.23, C:0.36, G:0.00, T:0.41
Consensus pattern (11 bp):
TCATTCCTCAT
Found at i:33404358 original size:27 final size:27
Alignment explanation
Indices: 33404327--33404504 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33404317 TAAATTGTAC
33404327 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33404354 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33404380 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33404408 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33404436 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33404463 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33404490 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33404505 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33404441 original size:82 final size:81
Alignment explanation
Indices: 33404328--33404483 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33404318 AAATTGTACA
* *
33404328 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33404392 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33404409 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33404474 TGCGAGTTGA
65 TGCGAATTGA
33404484 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33404495 original size:82 final size:81
Alignment explanation
Indices: 33404324--33404504 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33404314 GATTAAATTG
* *
33404324 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33404389 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33404405 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33404469 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33404487 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33404505 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33406963 original size:30 final size:30
Alignment explanation
Indices: 33406906--33406963 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
33406896 ACCAGTGATG
*
33406906 TTTCAAATACTACAAACTATGGACCAATCT
1 TTTCAAATACTACAAACGATGGACCAATCT
* *
33406936 TTTCAAATACTACAAACGGTGGGCCAAT
1 TTTCAAATACTACAAACGATGGACCAAT
33406964 TTAGTGGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (30 bp):
TTTCAAATACTACAAACGATGGACCAATCT
Found at i:33407751 original size:319 final size:319
Alignment explanation
Indices: 33407348--33407981 Score: 1214
Period size: 319 Copynumber: 2.0 Consensus size: 319
33407338 AAAAATTTTT
33407348 TTTTTCCAGACACTGCCCAGTCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAAC
1 TTTTTCCAGACACTGCCCAGTCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAAC
*
33407413 TCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTATACTCATGTCCCCACCTATGTATTTTTTTC
66 TCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTC
33407478 TAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGAGTCG
131 TAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGAGTCG
*
33407543 ACTACACTGACCTTTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCC
196 ACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATGCC
*
33407608 GTTTATTTCTATGGAAACTATACTCAGAGAGGAATCCATACATATATCGTATGACAAAA
261 GTTTATTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATCGTATGACAAAA
33407667 TTTTTCCAGACACTGCCCAGTCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAAC
1 TTTTTCCAGACACTGCCCAGTCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAAC
33407732 TCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTC
66 TCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTC
*
33407797 TAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGGTCG
131 TAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGAGTCG
33407862 ACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATGCC
196 ACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATGCC
* *
33407927 GTTTGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATGGTATGAC
261 GTTTATTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATCGTATGAC
33407982 CCCTAATTAT
Statistics
Matches: 309, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
319 309 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (319 bp):
TTTTTCCAGACACTGCCCAGTCTGAGTACTAGTCGCTTCAAAAATCATATCTTGAGTTTCACAAC
TCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTC
TAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGAGTCG
ACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATGCC
GTTTATTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATCGTATGACAAAA
Found at i:33409082 original size:40 final size:39
Alignment explanation
Indices: 33408984--33409246 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
33408974 TCCTCGTTCA
* * * *
33408984 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33409023 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33409062 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33409102 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33409142 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33409182 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33409223 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33409247 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33409206 original size:120 final size:119
Alignment explanation
Indices: 33408984--33409246 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
33408974 TCCTCGTTCA
* * *
33408984 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
33409049 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
33409102 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
33409167 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
33409223 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33409247 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:33409255 original size:41 final size:41
Alignment explanation
Indices: 33409178--33409255 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33409168 TTTGTATCTC
* * *
33409178 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33409219 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33409256 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33416978 original size:39 final size:40
Alignment explanation
Indices: 33416933--33417104 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
33416923 GCTCCTCGTT
* * *
33416933 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
33416973 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
33417012 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
33417052 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
33417092 CAAATGCCTTCGG
1 CAAATGCCTTCGG
33417105 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:33417033 original size:40 final size:39
Alignment explanation
Indices: 33416935--33417157 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
33416925 TCCTCGTTCA
* * * *
33416935 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33416974 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33417013 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33417053 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33417093 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33417134 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33417158 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33417117 original size:80 final size:79
Alignment explanation
Indices: 33416933--33417157 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
33416923 GCTCCTCGTT
* * * * *
33416933 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
33416997 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
33417012 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
33417077 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
33417092 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
33417156 GA
63 GA
33417158 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:33417166 original size:41 final size:41
Alignment explanation
Indices: 33417089--33417166 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33417079 TTTGTATCTC
* * *
33417089 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33417130 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33417167 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33421723 original size:17 final size:17
Alignment explanation
Indices: 33421701--33421735 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
33421691 AAAAGCATTT
33421701 TGGAAGCTTTTGAAGAG
1 TGGAAGCTTTTGAAGAG
33421718 TGGAAGCTTTTGAAGAG
1 TGGAAGCTTTTGAAGAG
33421735 T
1 T
33421736 TAAAGAAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.31
Consensus pattern (17 bp):
TGGAAGCTTTTGAAGAG
Found at i:33421869 original size:158 final size:158
Alignment explanation
Indices: 33421640--33421957 Score: 636
Period size: 158 Copynumber: 2.0 Consensus size: 158
33421630 TCTCGAAAAT
33421640 TTCTAAACTGTTGTGTTTGTTGATAGAGAAAGATACAGTGTTTGATTTCAAAAAAGCATTTTGGA
1 TTCTAAACTGTTGTGTTTGTTGATAGAGAAAGATACAGTGTTTGATTTCAAAAAAGCATTTTGGA
33421705 AGCTTTTGAAGAGTGGAAGCTTTTGAAGAGTTAAAGAAGCAGTAAAACTCAGCCCCAATAATCAT
66 AGCTTTTGAAGAGTGGAAGCTTTTGAAGAGTTAAAGAAGCAGTAAAACTCAGCCCCAATAATCAT
33421770 TACACTTGATTGGAACTCACATTTTAAG
131 TACACTTGATTGGAACTCACATTTTAAG
33421798 TTCTAAACTGTTGTGTTTGTTGATAGAGAAAGATACAGTGTTTGATTTCAAAAAAGCATTTTGGA
1 TTCTAAACTGTTGTGTTTGTTGATAGAGAAAGATACAGTGTTTGATTTCAAAAAAGCATTTTGGA
33421863 AGCTTTTGAAGAGTGGAAGCTTTTGAAGAGTTAAAGAAGCAGTAAAACTCAGCCCCAATAATCAT
66 AGCTTTTGAAGAGTGGAAGCTTTTGAAGAGTTAAAGAAGCAGTAAAACTCAGCCCCAATAATCAT
33421928 TACACTTGATTGGAACTCACATTTTAAG
131 TACACTTGATTGGAACTCACATTTTAAG
33421956 TT
1 TT
33421958 GATGTGCGAT
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
158 160 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (158 bp):
TTCTAAACTGTTGTGTTTGTTGATAGAGAAAGATACAGTGTTTGATTTCAAAAAAGCATTTTGGA
AGCTTTTGAAGAGTGGAAGCTTTTGAAGAGTTAAAGAAGCAGTAAAACTCAGCCCCAATAATCAT
TACACTTGATTGGAACTCACATTTTAAG
Found at i:33421881 original size:17 final size:17
Alignment explanation
Indices: 33421859--33421893 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
33421849 AAAAGCATTT
33421859 TGGAAGCTTTTGAAGAG
1 TGGAAGCTTTTGAAGAG
33421876 TGGAAGCTTTTGAAGAG
1 TGGAAGCTTTTGAAGAG
33421893 T
1 T
33421894 TAAAGAAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.31
Consensus pattern (17 bp):
TGGAAGCTTTTGAAGAG
Found at i:33435677 original size:120 final size:118
Alignment explanation
Indices: 33435459--33435703 Score: 350
Period size: 120 Copynumber: 2.1 Consensus size: 118
33435449 GGACTAAGAT
*
33435459 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
* ** *
33435524 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* *
33435578 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA
* * *
33435643 TAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
65 -AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
33435697 CCGAAGG
1 CCGAAGG
33435704 TACGTGATTT
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
119 51 0.45
120 60 0.53
121 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:33435684 original size:40 final size:40
Alignment explanation
Indices: 33435406--33435670 Score: 367
Period size: 40 Copynumber: 6.7 Consensus size: 40
33435396 TTGAATGATG
* * * * *
33435406 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
33435446 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33435486 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33435525 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33435565 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33435605 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
33435646 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
33435671 AACGAGTAGC
Statistics
Matches: 207, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 35 0.17
40 162 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33456215 original size:28 final size:26
Alignment explanation
Indices: 33456171--33456222 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
33456161 ATATTATTAA
33456171 TATAATATATAAATGTTATAATAATG
1 TATAATATATAAATGTTATAATAATG
*
33456197 TATAATATATTATTATGTTATAATAA
1 TATAATATA-TA-AATGTTATAATAA
33456223 ACATTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 9 0.39
27 2 0.09
28 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (26 bp):
TATAATATATAAATGTTATAATAATG
Found at i:33472056 original size:27 final size:27
Alignment explanation
Indices: 33472026--33472203 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33472016 ATATTGAGTC
* * * *
33472026 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
33472053 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33472080 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
33472108 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33472135 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
33472162 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33472189 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33472204 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33472165 original size:82 final size:81
Alignment explanation
Indices: 33472047--33472202 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33472037 TGCTATATAA
* *
33472047 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33472112 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33472129 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33472193 CACTTAGTGC
65 CACTTAGTGC
33472203 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33481074 original size:23 final size:23
Alignment explanation
Indices: 33481048--33481106 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 23
33481038 ACTTATGAGT
*
33481048 TTCCTGTTATAGCCCAGATAAGC
1 TTCCTGTTATAGCCCAAATAAGC
* * *
33481071 TTCCTGTTACATGGCTCAAATGAGC
1 TTCCTGTT--ATAGCCCAAATAAGC
33481096 TTCCTGTTATA
1 TTCCTGTTATA
33481107 TGGCTCGAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
23 10 0.34
25 19 0.66
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (23 bp):
TTCCTGTTATAGCCCAAATAAGC
Found at i:33483229 original size:40 final size:40
Alignment explanation
Indices: 33483181--33484104 Score: 1469
Period size: 40 Copynumber: 22.8 Consensus size: 40
33483171 GTTTCTTCTG
*
33483181 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
* ***
33483221 TCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGG-TGCGA
* * ** * *
33483264 TCCGCTCCACTGCAACTTTAGGGAGATAGGA-TTGGTTTCTTCTGA
1 TCTGCTCCACTACTGC-TTAGGGAGATAAGACTTGG----TGC-GA
33483309 -CTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
* ***
33483348 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TG-GTGCGA
* * ** * *
33483391 TCCGCTCCACTGCAACTTTAGGGAGATAGGA-TTGGTTTCTTCTG-
1 TCTGCTCCACTACTGC-TTAGGGAGATAAGACTTGG----TGC-GA
33483435 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483475 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483515 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483555 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483595 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483635 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483675 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483715 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483755 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483795 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483835 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483875 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483915 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483955 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33483995 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33484035 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
33484075 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
33484105 TCTACCATCT
Statistics
Matches: 825, Mismatches: 38, Indels: 42
0.91 0.04 0.05
Matches are distributed among these distances:
39 3 0.00
40 692 0.84
41 9 0.01
42 6 0.01
43 53 0.06
44 61 0.07
45 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTGCGA
Found at i:33484155 original size:44 final size:44
Alignment explanation
Indices: 33483436--33484192 Score: 207
Period size: 40 Copynumber: 18.7 Consensus size: 44
33483426 TTTCTTCTGT
* * * *
33483436 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483476 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483516 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483556 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483596 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483636 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483676 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483716 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483756 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483796 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483836 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483876 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483916 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483956 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33483996 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* * * *
33484036 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGGTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTCGAC
* *
33484076 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGAC
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGAC
*
33484120 CTGCTCCACTACTGCTTAGGGAGATAGGATTTACCATCTTCGAC
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGAC
33484164 CTGCTCCACTACTGCTTAGGGAGATAGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGA
33484193 CTGGTGGCTT
Statistics
Matches: 705, Mismatches: 7, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
40 629 0.89
41 2 0.00
44 73 0.10
45 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (44 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGAC
Found at i:33484345 original size:175 final size:173
Alignment explanation
Indices: 33484199--33484550 Score: 456
Period size: 175 Copynumber: 2.0 Consensus size: 173
33484189 AGGACTGGTG
* * *
33484199 GCTTAAATCTACTTCATTACTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGAA
1 GCTTAAATCT-CTTC--CACTGTAATCTCAAGGAAATAAGACCTGATACGATCTACTCTACTGAA
*
33484264 AATTTAGAGAGATAAGATCCTTT-ATTTTAATCCGCTCCACTGTAATCTCA-AGAAGATAGGATT
63 AATTCAGAGAGATAAGAT-CTTTGATTTTAATCCGCTCCACTGTAATCTCAGAG-AGATAGGATT
*
33484327 ACTAGCTTTAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT
126 ACTAGCTTCAATCTGCTCCAC-GTAATCTCAGGGAGATAAGATCTG-AAT
* *** * * * * * *
33484377 TCTTCGGTCTGTTCCACTGTAATCTCAAGGAAATAAGATCTGATGCGATCTACTCTGCTGTAACT
1 GCTTAAATCTCTTCCACTGTAATCTCAAGGAAATAAGACCTGATACGATCTACTCTACTGAAAAT
*
33484442 TCAGAGAGATAAGATCTTTGGTTTTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAG
66 TCAGAGAGATAAGATCTTTGATTTTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAG
*
33484507 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAGATCTGAA
131 CTTCAATCTGCTCCAC-GTAATCTCAGGGAGAT-AAGATCTGAA
33484551 ATTCTTCGGT
Statistics
Matches: 154, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
174 4 0.03
175 131 0.85
176 10 0.06
177 3 0.02
178 6 0.04
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (173 bp):
GCTTAAATCTCTTCCACTGTAATCTCAAGGAAATAAGACCTGATACGATCTACTCTACTGAAAAT
TCAGAGAGATAAGATCTTTGATTTTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAG
CTTCAATCTGCTCCACGTAATCTCAGGGAGATAAGATCTGAAT
Found at i:33484365 original size:44 final size:44
Alignment explanation
Indices: 33484292--33485123 Score: 292
Period size: 44 Copynumber: 18.8 Consensus size: 44
33484282 CCTTTATTTT
* * * * *
33484292 AATCCGCTCCACTGTAATCTCAAGAAGATAGGATTACTAGCTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
33484336 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-GCTTC
** * * * * *
33484382 GGTCTGTTCCACTGTAATCTCAAGGAAATAAGA-T-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * ** * * * * *
33484423 GATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCT-TTGGTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTC
* * *
33484467 AATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
33484511 AATCTGCTCCGCTGTAATCTCAGGGAGATAAAGATCTGA-AATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGAT-AAGAT-T-ACTA-GCTTC
** * * * * *
33484558 GGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCATA--TTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTAC-TAGCTTC
* * * ** *
33484602 AACCTGCCCCACTGTAA-CTTCAGGGAGATAAGGTTTGTGGCTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTAGCTTC
* ** * *
33484646 GATCTGCTCTTCTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-GCTTC
** * * * * *
33484692 GGTCTGTTCCACTGTAATCTCAAGGAAATAAGA-T-CT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * ** * ** * * *
33484733 GATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATTTTTGGTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTAGCTTC
* * *
33484777 AATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
33484821 AATCTGCTCCGCTGTAATCTCAGGGAGATAAAGATCTGA-AATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGAT-AAGAT-T-ACTA-GCTTC
** * * * * *
33484868 GGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCATA--TTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTAC-TAGCTTC
* * * * * *
33484912 AACCTGCCCCACTATAA-CTTCAGGAAGATAAGGTT-CGTGGCTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAGCTTC
* * * *
33484956 GATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-GCTTC
** * * * * *
33485002 GGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCATA--TTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTAC-TAGCTTC
* * * * * *
33485046 AACCTGCCCCACTATAA-CTTCAGGAAGATAAGGTT-CGTGGCTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAGCTTC
* *
33485090 GATCTGCTCCTCTGTAATCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT
33485124 CTGAAATTCT
Statistics
Matches: 569, Mismatches: 167, Indels: 104
0.68 0.20 0.12
Matches are distributed among these distances:
40 2 0.00
41 50 0.09
42 6 0.01
43 13 0.02
44 312 0.55
45 17 0.03
46 109 0.19
47 60 0.11
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:33484665 original size:310 final size:310
Alignment explanation
Indices: 33484337--33485006 Score: 1286
Period size: 310 Copynumber: 2.2 Consensus size: 310
33484327 ACTAGCTTTA
*
33484337 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
1 ATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
33484402 CAAGGAAATAAGATCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTGGTTTT
66 CAAGGAAATAAGATCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTGGTTTT
33484467 AATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
131 AATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
33484532 AGGGAGATAAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCA
196 AGGGAGATAAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCA
* * *
33484597 TATTCAACCTGCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCG
261 TATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGTTCGTGGCTTCG
*
33484647 ATCTGCTCTTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
1 ATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
*
33484712 CAAGGAAATAAGATCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATTTTTGGTTTT
66 CAAGGAAATAAGATCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTGGTTTT
33484777 AATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
131 AATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
33484842 AGGGAGATAAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCA
196 AGGGAGATAAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCA
33484907 TATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGTTCGTGGCTTCG
261 TATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGTTCGTGGCTTCG
33484957 ATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 ATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
33485007 ACTCCACTAT
Statistics
Matches: 353, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
310 353 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (310 bp):
ATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
CAAGGAAATAAGATCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTGGTTTT
AATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTTAGGGAGATAAGACTTGCA
TATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGTTCGTGGCTTCG
Found at i:33485035 original size:134 final size:134
Alignment explanation
Indices: 33484816--33485212 Score: 749
Period size: 134 Copynumber: 3.0 Consensus size: 134
33484806 AGGATTACTA
* *
33484816 GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAGATCTGAAATTCTTCGGTCTACTCCACT
1 GCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT-AAGATCTGAAATTCTTCGGTCTACTCCACT
33484881 ATAACCTTAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGT
65 ATAACCTTAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGT
33484946 TCGTG
130 TCGTG
33484951 GCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTA
1 GCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTA
33485016 TAACCTTAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGTT
66 TAACCTTAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGTT
33485081 CGTG
131 CGTG
33485085 GCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTA
1 GCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTA
* *
33485150 TAACCTTAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAGATAAGG
66 TAACCTTAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGG
33485213 CTTTATGCGA
Statistics
Matches: 258, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
134 226 0.88
135 32 0.12
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (134 bp):
GCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTA
TAACCTTAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTATAACTTCAGGAAGATAAGGTT
CGTG
Found at i:33485207 original size:44 final size:44
Alignment explanation
Indices: 33484874--33485294 Score: 196
Period size: 44 Copynumber: 9.5 Consensus size: 44
33484864 CTTCGGTCTA
33484874 CTCCACTATAACCTT-AGGGAGATAAGACTTGCATATTCAACCTG
1 CTCCACTATAA-CTTCAGGGAGATAAGACTTGCATATTCAACCTG
* * * * * * *
33484918 CCCCACTATAACTTCAGGAAGATAAG-GTT-CGTGGCTTCGATCTG
1 CTCCACTATAACTTCAGGGAGATAAGACTTGCAT--ATTCAACCTG
* * * ** *
33484962 CTCCTCTGTAA-TCTCAGGGAGATAAGA-TCTG-AAATTCTTCGGTCTA
1 CTCCACTATAACT-TCAGGGAGATAAGACT-TGCATATTCAAC---CTG
33485008 CTCCACTATAACCTT-AGGGAGATAAGACTTGCATATTCAACCTG
1 CTCCACTATAA-CTTCAGGGAGATAAGACTTGCATATTCAACCTG
* * * * * * *
33485052 CCCCACTATAACTTCAGGAAGATAAG-GTT-CGTGGCTTCGATCTG
1 CTCCACTATAACTTCAGGGAGATAAGACTTGCAT--ATTCAACCTG
* * * ** *
33485096 CTCCTCTGTAA-TCTCAGGGAGATAAGA-TCTG-AAATTCTTCGGTCTA
1 CTCCACTATAACT-TCAGGGAGATAAGACT-TGCATATTCAAC---CTG
33485142 CTCCACTATAACCTT-AGGGAGATAAGACTTGCATATTCAACCTG
1 CTCCACTATAA-CTTCAGGGAGATAAGACTTGCATATTCAACCTG
* * * * *
33485186 CCCCACTGTAACTTCAGGGAGATAAGGCTT---TATGCGACCTG
1 CTCCACTATAACTTCAGGGAGATAAGACTTGCATATTCAACCTG
* * * * * *
33485227 CTCTACTGTAACTTCAGAGAGATAGGATCCTT-TAT-TTTAATCC-G
1 CTCCACTATAACTTCAGGGAGATAAGA--CTTGCATATTCAA-CCTG
33485271 CTCCACTATAACTTCAGGGAGATA
1 CTCCACTATAACTTCAGGGAGATA
33485295 GGATAGTGTC
Statistics
Matches: 279, Mismatches: 64, Indels: 68
0.68 0.16 0.17
Matches are distributed among these distances:
41 31 0.11
42 4 0.01
43 24 0.09
44 147 0.53
45 5 0.02
46 50 0.18
47 16 0.06
48 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
CTCCACTATAACTTCAGGGAGATAAGACTTGCATATTCAACCTG
Found at i:33486627 original size:7 final size:7
Alignment explanation
Indices: 33486615--33486661 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
33486605 TTAGCCTCTC
33486615 CATTTTT
1 CATTTTT
33486622 CA-TTTT
1 CATTTTT
*
33486628 CTTTTTT
1 CATTTTT
*
33486635 CAATTTT
1 CATTTTT
*
33486642 CA-TTCT
1 CATTTTT
33486648 CATTTTT
1 CATTTTT
33486655 CATTTTT
1 CATTTTT
33486662 TCAGAGTGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
6 10 0.30
7 23 0.70
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:33486661 original size:20 final size:20
Alignment explanation
Indices: 33486615--33486661 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
33486605 TTAGCCTCTC
* *
33486615 CATTTTTCATTTTCTTTTTT
1 CATTTTTCATTCTCATTTTT
*
33486635 CAATTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
33486655 CATTTTT
1 CATTTTT
33486662 TCAGAGTGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:33488381 original size:26 final size:28
Alignment explanation
Indices: 33488352--33488407 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 28
33488342 TGAAATAATC
*
33488352 AGAAATAATTATTCAAAAA-GAATG-AA
1 AGAAATAATTACTCAAAAAGGAATGCAA
* *
33488378 AG-AATATTTGCTCAAAAAGGAATGCAA
1 AGAAATAATTACTCAAAAAGGAATGCAA
33488405 AGA
1 AGA
33488408 TGTATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
25 13 0.54
26 7 0.29
27 4 0.17
ACGTcount: A:0.55, C:0.07, G:0.16, T:0.21
Consensus pattern (28 bp):
AGAAATAATTACTCAAAAAGGAATGCAA
Found at i:33496724 original size:29 final size:29
Alignment explanation
Indices: 33496661--33496728 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
33496651 TAATCAACCG
33496661 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
33496690 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
33496719 CGCACACTTA
1 CGCACACTTA
33496729 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:33496841 original size:174 final size:174
Alignment explanation
Indices: 33496550--33496877 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
33496540 AACTCAAGGT
* *
33496550 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
33496615 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
33496680 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
33496724 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
33496789 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
33496854 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
33496878 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:33496869 original size:29 final size:30
Alignment explanation
Indices: 33496830--33496908 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
33496820 CTTAATAATC
33496830 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
33496860 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
33496889 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
33496909 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:33501221 original size:7 final size:7
Alignment explanation
Indices: 33501206--33501253 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
33501196 GTTCAGATTC
33501206 AAAAA-A
1 AAAAACA
33501212 AAAAAC-
1 AAAAACA
33501218 AAAAACA
1 AAAAACA
33501225 AAAAACA
1 AAAAACA
33501232 AAAAAC-
1 AAAAACA
33501238 -AAAACA
1 AAAAACA
*
33501244 AAAAATA
1 AAAAACA
33501251 AAA
1 AAA
33501254 GTGAAAGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
5 5 0.14
6 11 0.30
7 21 0.57
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (7 bp):
AAAAACA
Found at i:33501222 original size:12 final size:12
Alignment explanation
Indices: 33501205--33501253 Score: 71
Period size: 12 Copynumber: 3.9 Consensus size: 12
33501195 AGTTCAGATT
33501205 CAAAAAAAAAAA
1 CAAAAAAAAAAA
33501217 CAAAAACAAAAAA
1 CAAAAA-AAAAAA
*
33501230 CAAAAAACAAAA
1 CAAAAAAAAAAA
33501242 CAAAAAATAAAA
1 CAAAAAA-AAAA
33501254 GTGAAAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
12 18 0.55
13 15 0.45
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:33503857 original size:44 final size:43
Alignment explanation
Indices: 33503804--33504160 Score: 248
Period size: 44 Copynumber: 8.3 Consensus size: 43
33503794 TCCCTCAACA
*
33503804 GCAGCTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTT
1 GCAG-TGGAGCAGATTAAAGCC-ATAATCTTATCTCCCTGAAGTT
* * * *
33503849 GCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
1 GCAGTGGAGCAGATTAAAGCCATA-ATCTTATCTCCCTGAAGTT
* * *** * *
33503893 GCAG-AGAGTAGATCGCA-TCA-AATCTTATCTCTCTGAAGTT
1 GCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCTGAAGTT
* * *
33503933 GTAGTGGAGCAGACTAAGTAAG-CA-AGTCTTATC-CTCCTGAAGTT
1 GCAGTGGAGCAGA-TTA--AAGCCATAATCTTATCTC-CCTGAAGTT
* * * * *
33503977 GCAATGGGGCAGATTCAAGATGGCA-AGTCTTATCTCCCTAAAGTT
1 GCAGTGGAGCAGATT-AA-A-GCCATAATCTTATCTCCCTGAAGTT
* *
33504022 GCAATGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTT
1 GCAGTGGAGCAGATTAAAGCC-ATAATCTTATCTCCCTGAAGTT
* * * *
33504066 GCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
1 GCAGTGGAGCAGATTAAAGCCATA-ATCTTATCTCCCTGAAGTT
* * * * *
33504110 GCAG-AGAGCAGATCACA-TC-TAGTCTTATCTCCCTGAAGTT
1 GCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCTGAAGTT
*
33504150 GCAGTGAAGCA
1 GCAGTGGAGCA
33504161 AACTAAATAA
Statistics
Matches: 250, Mismatches: 46, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
40 43 0.17
41 13 0.05
42 6 0.02
43 25 0.10
44 125 0.50
45 37 0.15
46 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
GCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCTGAAGTT
Found at i:33503879 original size:132 final size:132
Alignment explanation
Indices: 33502516--33503813 Score: 2353
Period size: 132 Copynumber: 9.7 Consensus size: 132
33502506 CTGCATTGAC
* ** *
33502516 AGTGGAGCAGATTGAAGACGGCAAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * *
33502581 CAAGCCTTGTCTCCCTGAGCAGCAGCGAAGAAGGTTGAAGATTGTAGATCTTATCTCCTTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33502646 GT
131 GT
33502648 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
33502713 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33502778 GT
131 GT
33502780 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
33502845 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33502910 GT
131 GT
33502912 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
33502977 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33503042 GT
131 GT
33503044 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
33503109 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33503174 GT
131 GT
33503176 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
33503241 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33503306 GT
131 GT
33503308 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
33503373 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33503438 GT
131 GT
33503440 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
33503505 CAAGCCTTGTCTCCCTCAACAGCAGCGGAGAAGGTTGAAGATTGTAGATCCTATCTCCCTGAAGT
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCC------
33503570 TGCAGTGGAGTGCAGT
125 T--A----A--GCAGT
33503586 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
33503651 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
33503716 GT
131 GT
33503718 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
33503783 CAAGCCTTGTCTCCCTCAACAGCAGCTGGAG
66 CAAGCCTTGTCTCCCTCAGCAGCAGC-GGAG
33503814 CAGATTAAAG
Statistics
Matches: 1136, Mismatches: 15, Indels: 29
0.96 0.01 0.02
Matches are distributed among these distances:
132 1000 0.88
133 4 0.00
134 1 0.00
138 2 0.00
140 2 0.00
144 1 0.00
146 126 0.11
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
GT
Found at i:33504091 original size:217 final size:217
Alignment explanation
Indices: 33503809--33504218 Score: 703
Period size: 217 Copynumber: 1.9 Consensus size: 217
33503799 CAACAGCAGC
33503809 TGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAG
1 TGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAG
* * * *
33503874 ATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGCATCAAATCTTATCTCTCTGAAGTTGTAGTG
66 ATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAAATCTTATCTCCCTGAAGTTGCAGTG
* * * * *
33503939 GAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAATGGGGCAGATTCAAGATGGCAAG
131 AAGCAAACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTCAAGATGGCAAG
33504004 TCTTATCTCCCTAAAGTTGCAA
196 TCTTATCTCCCTAAAGTTGCAA
33504026 TGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAG
1 TGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAG
* *
33504091 ATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTG
66 ATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAAATCTTATCTCCCTGAAGTTGCAGTG
* *
33504156 AAGCAAACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCA
131 AAGCAAACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTCAAGATGGCA
33504219 TTAATTCCTA
Statistics
Matches: 180, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
217 180 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (217 bp):
TGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAG
ATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAAATCTTATCTCCCTGAAGTTGCAGTG
AAGCAAACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTCAAGATGGCAAG
TCTTATCTCCCTAAAGTTGCAA
Found at i:33504459 original size:40 final size:40
Alignment explanation
Indices: 33504384--33505225 Score: 1627
Period size: 40 Copynumber: 21.1 Consensus size: 40
33504374 AATTTTTGAG
* *
33504384 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
*
33504422 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504462 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504502 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504542 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504582 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504622 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504662 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504702 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504742 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504782 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504822 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504862 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504902 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504942 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33504982 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33505022 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33505062 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33505102 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33505142 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
33505182 GATATGCAATCCTAGATATG-TGATATGCAATCTTAGATAT
1 GATATGCAATCCTAGATATGAT-ATATGCAATCTTAGATAT
33505222 GATA
1 GATA
33505226 NNNNNNNNNN
Statistics
Matches: 799, Mismatches: 2, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
38 20 0.03
39 1 0.00
40 778 0.97
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (40 bp):
GATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
Found at i:33510933 original size:51 final size:50
Alignment explanation
Indices: 33510814--33510998 Score: 160
Period size: 51 Copynumber: 3.7 Consensus size: 50
33510804 AAAGTGATGG
* * * * * *
33510814 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGCCAGA-A-TGATTAG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-A-TAA
* * *
33510864 TCGCACGTGTAGTACTATGTACAGGCTACTATGCGTACCGGATAGCT-TCAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAG-TAT-AA
* * * * **
33510915 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-ATAA
*
33510966 TCACATGTGTAGTACTATCTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
33510999 TGAACCGATA
Statistics
Matches: 108, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
50 36 0.33
51 70 0.65
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTATAA
Found at i:33511233 original size:8 final size:8
Alignment explanation
Indices: 33511220--33511244 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33511210 ATAATGATTG
33511220 AAAGTGAA
1 AAAGTGAA
33511228 AAAGTGAA
1 AAAGTGAA
33511236 AAAGTGAA
1 AAAGTGAA
33511244 A
1 A
33511245 TTATGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (8 bp):
AAAGTGAA
Found at i:33511251 original size:16 final size:16
Alignment explanation
Indices: 33511232--33511263 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33511222 AGTGAAAAAG
*
33511232 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
33511248 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
33511264 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:33524662 original size:30 final size:30
Alignment explanation
Indices: 33524605--33524666 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
33524595 GCTTTTTGAA
* *
33524605 AATATTTACAAAAAAAGGCATCTAATTTTT
1 AATATTTACAAAAAAAGGCACCAAATTTTT
*
33524635 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAAAGGC-ACCAAATTTTT
33524665 AA
1 AA
33524667 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAAAGGCACCAAATTTTT
Found at i:33528213 original size:66 final size:67
Alignment explanation
Indices: 33528107--33528238 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 67
33528097 TTTCTCTTCG
*
33528107 TTTCTATCATGAACCTCTTAATGACTGAAGTGGTAATG-TTTTTTCTCTACTATTTAGGTGTAGG
1 TTTCTATCATGAACCTCTTAATGACTAAAGTGGTAATGTTTTTTTCTCTACTATTTAGGTGTAGG
33528171 GA
66 GA
*
33528173 TTTCTATCATGAACCTCTTAATGACTAAAGTGGTAATGTTTTTTTCTCTGCTATTTAGGTGTAGG
1 TTTCTATCATGAACCTCTTAATGACTAAAGTGGTAATGTTTTTTTCTCTACTATTTAGGTGTAGG
33528238 G
66 G
33528239 GAAGGCTCAG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
66 37 0.59
67 26 0.41
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (67 bp):
TTTCTATCATGAACCTCTTAATGACTAAAGTGGTAATGTTTTTTTCTCTACTATTTAGGTGTAGG
GA
Found at i:33538347 original size:13 final size:13
Alignment explanation
Indices: 33538305--33538348 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
33538295 CATATTTATA
*
33538305 TTCATATAAATAT
1 TTCATATAAACAT
*
33538318 TTCATATAAACAC
1 TTCATATAAACAT
*
33538331 TTCATATAACCAT
1 TTCATATAAACAT
33538344 TTCAT
1 TTCAT
33538349 TTATTTCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (13 bp):
TTCATATAAACAT
Found at i:33559929 original size:22 final size:22
Alignment explanation
Indices: 33559904--33559948 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
33559894 CTTAAGTCCT
*
33559904 TTATCTCTGGATTGAACACAAG
1 TTATCTCTGGAATGAACACAAG
*
33559926 TTATCTCTGGAATGGACACAAG
1 TTATCTCTGGAATGAACACAAG
33559948 T
1 T
33559949 CATGGAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (22 bp):
TTATCTCTGGAATGAACACAAG
Found at i:33565195 original size:13 final size:13
Alignment explanation
Indices: 33565153--33565196 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
33565143 CATATTTATA
*
33565153 TTCATATAAATAT
1 TTCATATAAACAT
*
33565166 TTCATATAAACAC
1 TTCATATAAACAT
*
33565179 TTCATATAACCAT
1 TTCATATAAACAT
33565192 TTCAT
1 TTCAT
33565197 TTATTTCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (13 bp):
TTCATATAAACAT
Found at i:33581971 original size:22 final size:21
Alignment explanation
Indices: 33581946--33582013 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 21
33581936 TACACATTTC
33581946 ATCACATAACATTCAAGCATAT
1 ATCACA-AACATTCAAGCATAT
*
33581968 ATCACAATAC--TC-A-TATA-
1 ATCACAA-ACATTCAAGCATAT
*
33581985 ATCAAACAACATTCAAGCATAT
1 ATCACA-AACATTCAAGCATAT
33582007 ATCACAA
1 ATCACAA
33582014 TACTTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 15
0.65 0.07 0.28
Matches are distributed among these distances:
17 7 0.20
18 4 0.11
19 3 0.09
20 3 0.09
21 5 0.14
22 13 0.37
ACGTcount: A:0.49, C:0.24, G:0.03, T:0.25
Consensus pattern (21 bp):
ATCACAAACATTCAAGCATAT
Found at i:33582017 original size:39 final size:39
Alignment explanation
Indices: 33581924--33582017 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 39
33581914 CACTTTTAAA
* * * * * *
33581924 CATATATCACATTACACATTTCATCACATAACATTCAAG
1 CATATATCACAATACTCATATAATCAAACAACATTCAAG
33581963 CATATATCACAATACTCATATAATCAAACAACATTCAAG
1 CATATATCACAATACTCATATAATCAAACAACATTCAAG
33582002 CATATATCACAATACT
1 CATATATCACAATACT
33582018 TAAAAACATG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.45, C:0.24, G:0.02, T:0.29
Consensus pattern (39 bp):
CATATATCACAATACTCATATAATCAAACAACATTCAAG
Found at i:33595247 original size:19 final size:19
Alignment explanation
Indices: 33595223--33595261 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33595213 TAAAATTAAT
33595223 TTTTCTAAAAATATT-TTTA
1 TTTTCT-AAAATATTATTTA
*
33595242 TTTTCTAGAATATTATTTA
1 TTTTCTAAAATATTATTTA
33595261 T
1 T
33595262 CAATCTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTTCTAAAATATTATTTA
Found at i:33598638 original size:3 final size:3
Alignment explanation
Indices: 33598630--33598670 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
33598620 GTTACTTTAA
*
33598630 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAA TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
33598671 AGCTTTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:33608671 original size:123 final size:125
Alignment explanation
Indices: 33608243--33609380 Score: 1606
Period size: 126 Copynumber: 9.1 Consensus size: 125
33608233 AAGGCCAAGC
*
33608243 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
33608308 TCCTGCTTGAAGC-TTTTTTGACACTATTTTTTCAGAACCATATTCTCAAAATTATTTTTT
66 TCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-TTTTTT
* * ** *
33608368 CAGCAACTACTGTAGAAAAAGAGCGTTCATATGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGC
1 -AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
** * * ****
33608433 ATCCTGCTTGAAGCTTTTTTTTTACACTATTTTTTCAGAATCGTCTTCTCAAAAAAAAATTTT
65 ATCCTGCTTGAAGC-GCTTTTTGACACTATTTTTTCAGAACCGTCTTCTC-AAAATTTTTTTT
*
33608496 AGGAACTAATGTAGAAAAA-AGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
33608560 TCCTGCTTGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTC-AAATTTTTTTT
66 TCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTTTTTTT
*
33608618 AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
33608683 TCCTGCTTGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTC-AAATTTTTTTT
66 TCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTTTTTTT
*
33608741 AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
33608806 TCCTGCTTGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTC-AAATTTTTTTT
66 TCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTTTTTTT
* *
33608864 AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * * *
33608928 TTCTGCTTGAAGC-ATTTTTGACACTA-TTTTTCAAAACCATCTTCTCAAAATTATTTTTT
66 TCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-TTTTTT
*
33608987 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGC
1 -AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
33609051 ATTCTGCTTGAAGC-ATTTTTGACACTA-TTTTTCAAAACCATCTTCTCAAAATTATTTTTT
65 ATCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-TTTTTT
* *
33609111 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
1 -AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * *
33609176 ATCCTGCTTGAAGCG-TTTTTGACATTATTTTTTCAAAACCGTCTTTTCAAAATTTATTTTT
65 ATCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTT-TTTTT
* * * * ** * *
33609237 CAGAAACTCCTGTAGAAAAATAGCGTCCATGTGACAGCTTTTTTCAGTACTTTTGCTAACAGTGC
1 -AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
** * *
33609302 ATATTGCTTGAAGCG-TTTTTGTCACTATTTTTTTAGAACCGTCTTCTCAAAATTAATTTTTT
65 ATCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT--TTTTTT
* *
33609364 AGAAACTACTATAGAAA
1 AGGAACTACTGTAGAAA
33609381 TAAAAACAAA
Statistics
Matches: 941, Mismatches: 57, Indels: 28
0.92 0.06 0.03
Matches are distributed among these distances:
121 23 0.02
122 75 0.08
123 269 0.29
124 186 0.20
125 53 0.06
126 274 0.29
127 22 0.02
128 35 0.04
129 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (125 bp):
AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
TCCTGCTTGAAGCGCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTTTTTTT
Found at i:33609038 original size:124 final size:125
Alignment explanation
Indices: 33608243--33609380 Score: 1620
Period size: 123 Copynumber: 9.1 Consensus size: 125
33608233 AAGGCCAAGC
*
33608243 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
33608308 TCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCATATTCTCAAAATTATTTTTT
66 TCCTGCTTGAAGCCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * ** *
33608368 CAGCAACTACTGTAGAAAAAGAGCGTTCATATGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGC
1 -AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * ** **
33608433 ATCCTGCTTGAAGCTTTTTTTTTACACTATTTTTTCAGAATCGTCTTCTCAAAAAAAAATTTT
65 ATCCTGCTTGAAGC--CTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
*
33608496 AGGAACTAATGTAGAAAAA-AGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
33608560 TCCTGCTTGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTC-AAATT-TTTTTT
66 TCCTGCTTGAAGC-CTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
*
33608618 AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
33608683 TCCTGCTTGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTC-AAATT-TTTTTT
66 TCCTGCTTGAAGC-CTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
*
33608741 AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
33608806 TCCTGCTTGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTC-AAATT-TTTTTT
66 TCCTGCTTGAAGC-CTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
33608864 AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * * *
33608928 TTCTGCTTGAAGCATTTTTGACACTA-TTTTTCAAAACCATCTTCTCAAAATTATTTTTT
66 TCCTGCTTGAAGCCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
*
33608987 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGC
1 -AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
33609051 ATTCTGCTTGAAGCATTTTTGACACTA-TTTTTCAAAACCATCTTCTCAAAATTATTTTTT
65 ATCCTGCTTGAAGCCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
33609111 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
1 -AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * * *
33609176 ATCCTGCTTGAAGCGTTTTTGACATTATTTTTTCAAAACCGTCTTTTCAAAATTTATTTTTC
65 ATCCTGCTTGAAGCCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAA-TTATTTTTT
* * * * ** * *
33609238 AGAAACTCCTGTAGAAAAATAGCGTCCATGTGACAGCTTTTTTCAGTACTTTTGCTAACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
** * * *
33609303 TATTGCTTGAAGCGTTTTTGTCACTATTTTTTTAGAACCGTCTTCTCAAAATTAATTTTTT
66 TCCTGCTTGAAGCCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTTT
* *
33609364 AGAAACTACTATAGAAA
1 AGGAACTACTGTAGAAA
33609381 TAAAAACAAA
Statistics
Matches: 941, Mismatches: 60, Indels: 22
0.92 0.06 0.02
Matches are distributed among these distances:
121 23 0.02
122 72 0.08
123 272 0.29
124 186 0.20
125 54 0.06
126 270 0.29
127 25 0.03
128 39 0.04
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (125 bp):
AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
TCCTGCTTGAAGCCTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:33609479 original size:33 final size:31
Alignment explanation
Indices: 33609442--33609563 Score: 129
Period size: 33 Copynumber: 3.7 Consensus size: 31
33609432 ACCCTTTTAC
*
33609442 AAAAACCCTAAAACCTAAACACAATTATTTTTT
1 AAAAACCCT-AAACCTAAATA-AATTATTTTTT
* *
33609475 AAAAACCCTAAACCTTAATTTAATTAATTTTCTT
1 AAAAACCCTAAACC-TAAATAAATT-ATTTT-TT
*
33609509 AAAAACCCTAAACCTAATTTAAA-TATTTTTT
1 AAAAACCCTAAACCTAA-ATAAATTATTTTTT
*
33609540 AAAATCCCTAAACCCTAAATAAAT
1 AAAAACCCTAAA-CCTAAATAAAT
33609564 AAATTCCTAA
Statistics
Matches: 77, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
31 17 0.22
32 19 0.25
33 21 0.27
34 20 0.26
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAAACCCTAAACCTAAATAAATTATTTTTT
Found at i:33609516 original size:34 final size:31
Alignment explanation
Indices: 33609464--33609553 Score: 135
Period size: 34 Copynumber: 2.8 Consensus size: 31
33609454 ACCTAAACAC
33609464 AATTATTTTTTAAAAACCCTAAACCTTAATTT
1 AATTATTTTTTAAAAACCCTAAACC-TAATTT
33609496 AATTAATTTTCTTAAAAACCCTAAACCTAATTT
1 AATT-ATTTT-TTAAAAACCCTAAACCTAATTT
* *
33609529 AAATATTTTTTAAAATCCCTAAACC
1 AATTATTTTTTAAAAACCCTAAACC
33609554 CTAAATAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
31 15 0.28
32 9 0.17
33 14 0.26
34 16 0.30
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (31 bp):
AATTATTTTTTAAAAACCCTAAACCTAATTT
Found at i:33609631 original size:8 final size:7
Alignment explanation
Indices: 33609586--33609633 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 7
33609576 TATTTTAACA
33609586 AAACCCT
1 AAACCCT
33609593 -AACCCT
1 AAACCCT
33609599 -AACCCT
1 AAACCCT
33609605 AAACCACT
1 AAACC-CT
33609613 AAAACCCT
1 -AAACCCT
33609621 AAACCCAT
1 AAACCC-T
33609629 AAACC
1 AAACC
33609634 ATAGGCATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 12 0.32
7 10 0.27
8 10 0.27
9 5 0.14
ACGTcount: A:0.46, C:0.42, G:0.00, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:33612881 original size:15 final size:16
Alignment explanation
Indices: 33612863--33612896 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
33612853 AGATTAAATT
33612863 AATTAA-CTAAATACA
1 AATTAACCTAAATACA
*
33612878 AATTAACCTAAATGCA
1 AATTAACCTAAATACA
33612894 AAT
1 AAT
33612897 GAGATGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATACA
Found at i:33616034 original size:14 final size:15
Alignment explanation
Indices: 33616006--33616039 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
33615996 GCGCCTTCGT
33616006 AAAA-CGCCGCTAAA
1 AAAACCGCCGCTAAA
33616020 AAAACCGCCGC-AAA
1 AAAACCGCCGCTAAA
33616034 AAAACC
1 AAAACC
33616040 TAAGCCCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.53, C:0.32, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAACCGCCGCTAAA
Found at i:33616137 original size:42 final size:41
Alignment explanation
Indices: 33616074--33616284 Score: 199
Period size: 41 Copynumber: 5.1 Consensus size: 41
33616064 CCTTTCTGGG
* * *
33616074 CTTTAGCAGCGTTTTTTAAAAAAGCACCGCTAATGCTCAGAT
1 CTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * *
33616116 CTTTAGCGGTGTTTTTGAAAAAGTGCCACTAATGCTTAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * *
33616157 CTTTAG-GAGCGTTTTTGAAAAGGCGCAGCTAATGCTCAAAT
1 CTTTAGCG-GCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * **
33616198 CTTTAGCTGCGTTTTTGGAAAAGCGCCGCTAATGCTCGGGG
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * ** * *
33616239 CTTTAGTGGCGTTTTTTAAGAAGCGCATCTAATGCTCGGAG
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
33616280 CTTTA
1 CTTTA
33616285 ACATTTTATC
Statistics
Matches: 137, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 1 0.01
41 127 0.93
42 9 0.07
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
Found at i:33616310 original size:20 final size:19
Alignment explanation
Indices: 33616287--33616328 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
33616277 GAGCTTTAAC
*
33616287 ATTTTATCTGTTTATTTACT
1 ATTTAATCTGTTTATTTA-T
*
33616307 ATTTAATTTGTTTATTTAT
1 ATTTAATCTGTTTATTTAT
33616326 ATT
1 ATT
33616329 AATTAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (19 bp):
ATTTAATCTGTTTATTTAT
Found at i:33616425 original size:26 final size:26
Alignment explanation
Indices: 33616377--33616427 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
33616367 AAAATGGATA
** * *
33616377 AATTTGAAATAATGACACGTAGAAAT
1 AATTTGAAATAAAAAAACATAGAAAT
33616403 AATTTGAAATAAAAAAACATAGAAA
1 AATTTGAAATAAAAAAACATAGAAA
33616428 AATATTTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (26 bp):
AATTTGAAATAAAAAAACATAGAAAT
Found at i:33616741 original size:14 final size:14
Alignment explanation
Indices: 33616724--33616763 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
33616714 GGGTTGTGAT
33616724 TTAGGGGTTAAGGG
1 TTAGGGGTTAAGGG
*
33616738 TTAGGGGTTAGGGG
1 TTAGGGGTTAAGGG
33616752 TTA-GGGTTAAGG
1 TTAGGGGTTAAGG
33616764 ATTTAAGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (14 bp):
TTAGGGGTTAAGGG
Found at i:33618455 original size:2 final size:2
Alignment explanation
Indices: 33618448--33618477 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
33618438 AACAAGTATC
33618448 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
33618478 GAGTGCCGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:33622294 original size:43 final size:43
Alignment explanation
Indices: 33622181--33622345 Score: 190
Period size: 43 Copynumber: 3.9 Consensus size: 43
33622171 GTTATGTTTT
* ** * * *
33622181 TAGCGGCGTTTTTTCGAAAAGCGCCGCTAAAGGT-TTGTTCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* *
33622223 TAGCGGCGTTTGTCGG-AAAGCACCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
** *
33622265 TAGCGGCAATTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
33622308 TAGCGGCGTTTTTGGGAAAAACGCTGCTAAAGGTCATG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
33622346 ACGTTGTCAA
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
41 16 0.16
42 31 0.30
43 56 0.54
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
Found at i:33625563 original size:15 final size:16
Alignment explanation
Indices: 33625545--33625578 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
33625535 AGATTCAATT
33625545 AATTAA-CTAAATGCA
1 AATTAACCTAAATGCA
33625560 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
33625576 AAT
1 AAT
33625579 GAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:33630534 original size:25 final size:25
Alignment explanation
Indices: 33630487--33630535 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
33630477 GAACGAATTT
*
33630487 TCATAAAATTTTACCGAGGGTAAAA
1 TCATAAAATTTTACCGAGAGTAAAA
*
33630512 TCATCAAAATTTTA-CTAGAGTAAA
1 TCAT-AAAATTTTACCGAGAGTAAA
33630536 TTTGGGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (25 bp):
TCATAAAATTTTACCGAGAGTAAAA
Found at i:33631193 original size:28 final size:28
Alignment explanation
Indices: 33631116--33631203 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
33631106 TAAACGTAGG
* *
33631116 TACTGTCTCGGTGAACTTACTTCATGTT
1 TACTGTCTCGGTAAACTTACTTCGTGTT
* *
33631144 TACTGTCACTGTAAACTTACTTCGTGTT
1 TACTGTCTCGGTAAACTTACTTCGTGTT
* * * *
33631172 TACTGTCTCGGCAAAATCACTTTGTGTT
1 TACTGTCTCGGTAAACTTACTTCGTGTT
33631200 TACT
1 TACT
33631204 ATCTTGACAG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (28 bp):
TACTGTCTCGGTAAACTTACTTCGTGTT
Found at i:33634019 original size:30 final size:30
Alignment explanation
Indices: 33633983--33634043 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
33633973 AATGCTTAGT
33633983 AAGTTCGTATAAGAGAAACTTAAACTTCTC
1 AAGTTCGTATAAGAGAAACTTAAACTTCTC
33634013 AAGTTCGTATAAGAGAAACTTAAACTTCTC
1 AAGTTCGTATAAGAGAAACTTAAACTTCTC
33634043 A
1 A
33634044 TTCCTTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (30 bp):
AAGTTCGTATAAGAGAAACTTAAACTTCTC
Found at i:33642323 original size:42 final size:43
Alignment explanation
Indices: 33642234--33642332 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
33642224 AAGACAGGGG
* * * **
33642234 ACACATGGCCGTGTCCCAGCCCGTGTAACTCACTGAGTTGGGT
1 ACACACGGCCGTGTCCCAGCCCGTGTAACACACTGACTTGAAT
33642277 -CACACGGCCGTGTCCCAAG-CCGTGTAACACACTGACTT-AAT
1 ACACACGGCCGTGTCCC-AGCCCGTGTAACACACTGACTTGAAT
*
33642318 ACACACGACCGTGTC
1 ACACACGGCCGTGTC
33642333 TTAGACCATG
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
41 1 0.02
42 45 0.94
43 2 0.04
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.20
Consensus pattern (43 bp):
ACACACGGCCGTGTCCCAGCCCGTGTAACACACTGACTTGAAT
Found at i:33644341 original size:11 final size:11
Alignment explanation
Indices: 33644326--33644355 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
33644316 TTTATTCTTC
33644326 ATTTAATTTTG
1 ATTTAATTTTG
*
33644337 TTTTAATTTTG
1 ATTTAATTTTG
33644348 ATTTAATT
1 ATTTAATT
33644356 ACAAAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTG
Found at i:33650545 original size:25 final size:26
Alignment explanation
Indices: 33650494--33650546 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
33650484 ATTTAAATTA
33650494 AAAAAAATAGATATGATAACTTATTT
1 AAAAAAATAGATATGATAACTTATTT
*
33650520 AAAAAAATAGATATGATAA-TTTTTT
1 AAAAAAATAGATATGATAACTTATTT
33650545 AA
1 AA
33650547 TGTTGTCTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.36
Consensus pattern (26 bp):
AAAAAAATAGATATGATAACTTATTT
Found at i:33651230 original size:17 final size:18
Alignment explanation
Indices: 33651210--33651251 Score: 70
Period size: 16 Copynumber: 2.4 Consensus size: 18
33651200 AGAATTTTTG
33651210 AAAAATAATTATTT-TAT
1 AAAAATAATTATTTATAT
33651227 -AAAATAATTATTTATAT
1 AAAAATAATTATTTATAT
33651244 AAAAATAA
1 AAAAATAA
33651252 ATGGATCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.57
17 3 0.13
18 7 0.30
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAATAATTATTTATAT
Found at i:33651592 original size:69 final size:69
Alignment explanation
Indices: 33651519--33651656 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
33651509 AGGATTTTAG
*
33651519 GTATTGTTTGATAAACTGAAAAATTAAATACTAAAAAAATTGAATGTTGAAAAATAAGTATTGAC
1 GTATTGTTTGATAAACTGAAAAATTAAATACTAAAAAAATTGAATGTTGAAAAATAAGTATTGAA
33651584 AAAT
66 AAAT
33651588 GTATTGTTTGATAAACTGAAAAATTAAATACTAAAAAAATTGAATGTTGAAAAATAAGTATTGAA
1 GTATTGTTTGATAAACTGAAAAATTAAATACTAAAAAAATTGAATGTTGAAAAATAAGTATTGAA
33651653 AAAT
66 AAAT
33651657 TAAGTACTAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.51, C:0.04, G:0.13, T:0.32
Consensus pattern (69 bp):
GTATTGTTTGATAAACTGAAAAATTAAATACTAAAAAAATTGAATGTTGAAAAATAAGTATTGAA
AAAT
Found at i:33651651 original size:14 final size:15
Alignment explanation
Indices: 33651634--33651662 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33651624 AAATTGAATG
33651634 TTGAAAAA-TAAGTA
1 TTGAAAAATTAAGTA
33651648 TTGAAAAATTAAGTA
1 TTGAAAAATTAAGTA
33651663 CTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (15 bp):
TTGAAAAATTAAGTA
Found at i:33652279 original size:86 final size:86
Alignment explanation
Indices: 33652134--33652304 Score: 342
Period size: 86 Copynumber: 2.0 Consensus size: 86
33652124 TAGAATGTTC
33652134 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
1 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
33652199 AAGAAATAGTATATTGCATTA
66 AAGAAATAGTATATTGCATTA
33652220 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
1 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
33652285 AAGAAATAGTATATTGCATT
66 AAGAAATAGTATATTGCATT
33652305 TCAATGACAC
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.44
Consensus pattern (86 bp):
ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
AAGAAATAGTATATTGCATTA
Found at i:33653897 original size:12 final size:12
Alignment explanation
Indices: 33653880--33653904 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33653870 TGCACCAAGT
33653880 AGGGTCTCAGGA
1 AGGGTCTCAGGA
33653892 AGGGTCTCAGGA
1 AGGGTCTCAGGA
33653904 A
1 A
33653905 AGGGAAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.40, T:0.16
Consensus pattern (12 bp):
AGGGTCTCAGGA
Found at i:33663911 original size:30 final size:30
Alignment explanation
Indices: 33663877--33663935 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
33663867 TCCGAGCTTT
33663877 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * * *
33663907 GGGGAAAAATTGTAATTTTGCCAAAGTTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTTT
33663936 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:33664296 original size:26 final size:26
Alignment explanation
Indices: 33664260--33664309 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33664250 TTGGATAAAA
33664260 AGGGGTCGCTAAGTGCAGATTCCCTG
1 AGGGGTCGCTAAGTGCAGATTCCCTG
* *
33664286 AGGGGTTGCTAAGTGCTGATTCCC
1 AGGGGTCGCTAAGTGCAGATTCCC
33664310 CAAATTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.22, G:0.34, T:0.26
Consensus pattern (26 bp):
AGGGGTCGCTAAGTGCAGATTCCCTG
Found at i:33664336 original size:42 final size:42
Alignment explanation
Indices: 33664289--33664515 Score: 223
Period size: 43 Copynumber: 5.4 Consensus size: 42
33664279 TTCCCTGAGG
** *
33664289 GGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
* *
33664331 GGTTGCTAAGTGCTGATTCCATCGTA-TATTTGATTGTGAAAAG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATTA-TTGATTGT-AAAGGT
* * * * *
33664374 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
* *
33664416 AGTTGCTAAGTGCTGATTCCACCGCATCT-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGATTGT-AAAGGT
* *
33664459 GGTTGCTATGTGCTGATTCCCCGTATCATTGAATT-T-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTG-ATTGTAAAGGT
33664500 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
33664516 ATCCACCGAG
Statistics
Matches: 150, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
40 4 0.03
41 19 0.13
42 58 0.39
43 60 0.40
44 9 0.06
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
Found at i:33664431 original size:85 final size:84
Alignment explanation
Indices: 33664288--33664523 Score: 337
Period size: 85 Copynumber: 2.8 Consensus size: 84
33664278 ATTCCCTGAG
* ** * * *
33664288 GGGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGTGGTTGCTAAGTGCTGATTCCAT
1 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCCAC
*
33664353 CGTATATTTGATTGTGAAAA
65 CGCATATTTGATTGTGAAAA
* *
33664373 GGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTAGTTGCTAAGTGCTGATTCCAC
1 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCCAC
* *
33664438 CGCATCTTTGATTGTGAAAG
65 CGCATATTTGATTGTGAAAA
* *
33664458 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTTAAGGTGGTTGCTAAGTGCTGAATCCACC
1 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCACC
33664523 G
66 G
33664524 AGTAACGGAT
Statistics
Matches: 135, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
84 28 0.21
85 107 0.79
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (84 bp):
GGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCACC
GCATATTTGATTGTGAAAA
Found at i:33667735 original size:68 final size:68
Alignment explanation
Indices: 33667622--33667811 Score: 272
Period size: 68 Copynumber: 2.8 Consensus size: 68
33667612 AATCATAGGT
* *
33667622 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGACAACAAATGAAGTCTGCCAGGATAG
1 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTCTGCCAGGAAAG
33667687 GAA
66 GAA
* * * ** * *
33667690 ACATGAAACCATATTGTGTAATACCATAGTTGATCTATGGTAACAAATGAAGTCTGCTAGGAAAG
1 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTCTGCCAGGAAAG
*
33667755 TAA
66 GAA
* *
33667758 ACATGGCACCATATTGTGTAAGACCATAGCTGGGCTATTGCAACAAATGAAGTC
1 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTC
33667812 CACTAAAATG
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 104 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (68 bp):
ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTCTGCCAGGAAAG
GAA
Found at i:33671412 original size:50 final size:50
Alignment explanation
Indices: 33671260--33671450 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 50
33671250 GGTGATGAGA
33671260 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGACTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-----GA-TATGAGAGG
* * * * * * *
33671316 TTCCATGGAAAAACATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGAGG
** ** **
33671366 TCCCCCGTAAGACCATGTCTGGGACATGGCAAGGGCATCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGAGG
* * *
33671416 TCTCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
33671451 TAGTACAGGA
Statistics
Matches: 108, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
50 73 0.68
51 2 0.02
56 33 0.31
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGAGG
Found at i:33678665 original size:28 final size:28
Alignment explanation
Indices: 33678614--33678669 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
33678604 TTTGGATCCA
* *
33678614 TACTTGTAAGATAGTCTTAACGGACTCC
1 TACTTATAAGATAGTCCTAACGGACTCC
**
33678642 TACTTATAAGATAGTCCTGGCGGACTCC
1 TACTTATAAGATAGTCCTAACGGACTCC
33678670 CATATGGAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (28 bp):
TACTTATAAGATAGTCCTAACGGACTCC
Found at i:33692426 original size:49 final size:49
Alignment explanation
Indices: 33692373--33692693 Score: 522
Period size: 49 Copynumber: 6.6 Consensus size: 49
33692363 TTAGGATTCT
33692373 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
33692422 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
33692471 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
33692520 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
33692569 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
* * * *
33692618 ATGTGATGAAAGTGAACA-TG--TATATGTGTGATAGGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCA
33692665 ATGTGATGAAAATGTGAAAGTGTATATAT
1 ATGTGATG--AATGTGAAAGTGTATATAT
33692694 NNNNNNNNNN
Statistics
Matches: 259, Mismatches: 7, Indels: 10
0.94 0.03 0.04
Matches are distributed among these distances:
47 33 0.13
48 1 0.00
49 219 0.85
50 1 0.00
51 5 0.02
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
Found at i:33694958 original size:40 final size:40
Alignment explanation
Indices: 33694921--33695146 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
33694911 GCTACTCGTT
* *
33694921 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
33694961 CAAATGCCTTCGGGACTTAACCCGGACTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
33695001 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
33695041 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
33695081 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
33695122 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33695147 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33698310 original size:40 final size:40
Alignment explanation
Indices: 33698249--33698529 Score: 395
Period size: 40 Copynumber: 7.0 Consensus size: 40
33698239 AGGTCTCGAC
33698249 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
33698288 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
33698328 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
33698368 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
33698408 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
33698448 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
33698488 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
33698528 GA
1 GA
33698530 CGTGTATTCG
Statistics
Matches: 217, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 210 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:33699559 original size:20 final size:20
Alignment explanation
Indices: 33699534--33699575 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
33699524 AGTCGGAAAG
33699534 CGGTTTCGAGACCGCTAAAC
1 CGGTTTCGAGACCGCTAAAC
33699554 CGGTTTCGAGACCGCTAAAC
1 CGGTTTCGAGACCGCTAAAC
33699574 CG
1 CG
33699576 AGTCACCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (20 bp):
CGGTTTCGAGACCGCTAAAC
Found at i:33708441 original size:64 final size:64
Alignment explanation
Indices: 33708340--33708471 Score: 255
Period size: 64 Copynumber: 2.1 Consensus size: 64
33708330 TCACTTCATA
*
33708340 AAAAAATTCCCTAATGGCTCGAGCTTCTCAAGGTGACTGTCGAGCCGATTTTTACCCTTTGTAC
1 AAAAAATTCCCTAATGGCTCGACCTTCTCAAGGTGACTGTCGAGCCGATTTTTACCCTTTGTAC
33708404 AAAAAATTCCCTAATGGCTCGACCTTCTCAAGGTGACTGTCGAGCCGATTTTTACCCTTTGTAC
1 AAAAAATTCCCTAATGGCTCGACCTTCTCAAGGTGACTGTCGAGCCGATTTTTACCCTTTGTAC
33708468 AAAA
1 AAAA
33708472 CTATCGAAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (64 bp):
AAAAAATTCCCTAATGGCTCGACCTTCTCAAGGTGACTGTCGAGCCGATTTTTACCCTTTGTAC
Found at i:33709545 original size:28 final size:28
Alignment explanation
Indices: 33709512--33709751 Score: 178
Period size: 28 Copynumber: 8.6 Consensus size: 28
33709502 TCGAATGTTT
* * * *
33709512 CCATAATGGCTTCCTTCATTAGAGCTTG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* ** *
33709540 CCATAACGGCAACCTTCATCAGTGATCG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * *
33709568 CCACAAAGGCATCCTTCATCAGGGATCG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * *
33709596 CCACAAAGGCTCCCTTCATCAGAGATCA
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* ** * *
33709624 CCATAATGGCTTCCTTCATTGGGGATTG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * * *
33709652 CCACAAAGGCTTTCTTCAACAGAGATTG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * *
33709680 CCATAATGGCTTCCATT-ATCA-AGGGTCA
1 CCATAAAGGCTTCC-TTCATCAGA-GATCG
* * *
33709708 CCACAAAGGCTTCCTTCATCAAAGATCA
1 CCATAAAGGCTTCCTTCATCAGAGATCG
*
33709736 CCAAAAAGGCTTCCTT
1 CCATAAAGGCTTCCTT
33709752 TTCTTGGTGT
Statistics
Matches: 167, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
27 3 0.02
28 161 0.96
29 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (28 bp):
CCATAAAGGCTTCCTTCATCAGAGATCG
Found at i:33709616 original size:56 final size:56
Alignment explanation
Indices: 33709552--33709751 Score: 215
Period size: 56 Copynumber: 3.6 Consensus size: 56
33709542 ATAACGGCAA
* * * * *
33709552 CCTTCATCAGTGATCGCCACAAAGGCATCCTTCATCAGGGATCGCCACAAAGGCTC
1 CCTTCATCAGAGATCACCATAAAGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
* ** *
33709608 CCTTCATCAGAGATCACCATAATGGCTTCCTTCATTGGGGATTGCCACAAAGGCTT
1 CCTTCATCAGAGATCACCATAAAGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
* * ** * *
33709664 TCTTCAACAGAGATTGCCATAATGGCTTCCATT-ATCAAGGG-TCACCACAAAGGCTT
1 CCTTCATCAGAGATCACCATAAAGGCTTCC-TTCATC-AGGGATCGCCACAAAGGCTT
* *
33709720 CCTTCATCAAAGATCACCAAAAAGGCTTCCTT
1 CCTTCATCAGAGATCACCATAAAGGCTTCCTT
33709752 TTCTTGGTGT
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
55 2 0.02
56 111 0.94
57 5 0.04
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (56 bp):
CCTTCATCAGAGATCACCATAAAGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
Found at i:33709641 original size:84 final size:84
Alignment explanation
Indices: 33709552--33709751 Score: 197
Period size: 84 Copynumber: 2.4 Consensus size: 84
33709542 ATAACGGCAA
* * * * *
33709552 CCTTCATCAGTGATCGCCACAAAGGCATCCTTCATCAGGGATCGCCACAAAGGC-TCCCTTCATC
1 CCTTCATCAGAGATCGCCACAAAGGCTTCCTTCAACAGAGATCGCCACAAAGGCTTCCATT-ATC
* *
33709616 -AGAGATCACCATAATGGCTT
65 AAG-GATCACCACAAAGGCTT
** * * * * * *
33709636 CCTTCATTGGGGATTGCCACAAAGGCTTTCTTCAACAGAGATTGCCATAATGGCTTCCATTATCA
1 CCTTCATCAGAGATCGCCACAAAGGCTTCCTTCAACAGAGATCGCCACAAAGGCTTCCATTATCA
*
33709701 AGGGTCACCACAAAGGCTT
66 AGGATCACCACAAAGGCTT
* * *
33709720 CCTTCATCAAAGATCACCAAAAAGGCTTCCTT
1 CCTTCATCAGAGATCGCCACAAAGGCTTCCTT
33709752 TTCTTGGTGT
Statistics
Matches: 91, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
84 84 0.92
85 7 0.08
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (84 bp):
CCTTCATCAGAGATCGCCACAAAGGCTTCCTTCAACAGAGATCGCCACAAAGGCTTCCATTATCA
AGGATCACCACAAAGGCTT
Done.