Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 110 of 126
Found at i:33714254 original size:20 final size:20
Alignment explanation
Indices: 33714229--33714267 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33714219 TTGCTTTTTC
33714229 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
33714249 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
33714268 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:33714593 original size:50 final size:50
Alignment explanation
Indices: 33714476--33714648 Score: 156
Period size: 50 Copynumber: 3.5 Consensus size: 50
33714466 ACATGTCAAA
* * * * *
33714476 GCCAAGTCCCAGAAATGGTCTTACATGGGATGTT-TCCTGTAC--TACCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCCAAT
* * * *
33714525 GCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAAT
** ** * *
33714575 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAAT
33714625 GCCATG-CCCTAGACATGGTCTTAC
1 GCCATGTCCC-AGACATGGTCTTAC
33714649 GTGGTACCTA
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
48 4 0.04
49 33 0.32
50 65 0.64
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAAT
Found at i:33714649 original size:50 final size:50
Alignment explanation
Indices: 33714539--33714717 Score: 157
Period size: 50 Copynumber: 3.5 Consensus size: 50
33714529 TATCCCAAAT
* ** * * *
33714539 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCC-AGAC
1 ATGGTCTTACGTGGGACCTCTCATCTTGGTGCCAATGCCATG-CCCTAGAC
*
33714589 ATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAATGCCATGCCCTAGAC
1 ATGGTCTTACGTGGGACCTCTCATCTTGGTGCCAATGCCATGCCCTAGAC
* * ** *
33714639 ATGGTCTTACGTGGTACCTATCATAAACTCAATAATGCCAATGCCATGTCCTAGAC
1 ATGGTCTTACGTGGGACCTCTCAT---CT---TGGTGCCAATGCCATGCCCTAGAC
*
33714695 ATGGTCTTACATGGGA--TCTCATC
1 ATGGTCTTACGTGGGACCTCTCATC
33714718 CCCTTAATGT
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
49 3 0.03
50 60 0.57
51 1 0.01
53 2 0.02
54 5 0.05
56 35 0.33
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACGTGGGACCTCTCATCTTGGTGCCAATGCCATGCCCTAGAC
Found at i:33719229 original size:23 final size:21
Alignment explanation
Indices: 33719190--33719231 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
33719180 GTACTTAAAT
33719190 ACATTTTGTTGCATTTTTAGG
1 ACATTTTGTTGCATTTTTAGG
33719211 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
33719232 ATATGGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGG
Found at i:33725882 original size:49 final size:49
Alignment explanation
Indices: 33725824--33725924 Score: 193
Period size: 49 Copynumber: 2.1 Consensus size: 49
33725814 AATTTACTAT
*
33725824 ACTATTTAAAAAAGAATAAATATATAAAAAATAACATATTTTGGTATGG
1 ACTATTTAAAAAAGAATAAATATATAAAAAATAACATATTTTGATATGG
33725873 ACTATTTAAAAAAGAATAAATATATAAAAAATAACATATTTTGATATGG
1 ACTATTTAAAAAAGAATAAATATATAAAAAATAACATATTTTGATATGG
33725922 ACT
1 ACT
33725925 TAAAGCAAGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (49 bp):
ACTATTTAAAAAAGAATAAATATATAAAAAATAACATATTTTGATATGG
Found at i:33726344 original size:23 final size:21
Alignment explanation
Indices: 33726305--33726346 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
33726295 TTACTTAAGT
33726305 ACATTTTGTTGCATTTTTAGG
1 ACATTTTGTTGCATTTTTAGG
33726326 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
33726347 ATATGGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGG
Found at i:33727928 original size:46 final size:46
Alignment explanation
Indices: 33727875--33728021 Score: 145
Period size: 46 Copynumber: 3.2 Consensus size: 46
33727865 CACGTGAAAG
33727875 TAATAGTGCCTAGTTACCCACTT-GGGTTAAACCTACACGAATCGAA
1 TAATAGTGCCTAGTTACCCA-TTAGGGTTAAACCTACACGAATCGAA
** * * * *
33727921 TAATAGTGTTTGGTCT-CCCATTAGGGTTAAACCTACTCAAATTGGAA
1 TAATAGTGCCTAGT-TACCCATTAGGGTTAAACCTACACGAA-TCGAA
* * * * * *
33727968 AAATGGTGCCTAGTTACCCGTTAGGGTTGAACCTACACGAATTGGA
1 TAATAGTGCCTAGTTACCCATTAGGGTTAAACCTACACGAATCGAA
33728014 TAATAGTG
1 TAATAGTG
33728022 TTTGGTCACC
Statistics
Matches: 78, Mismatches: 19, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
45 2 0.03
46 41 0.53
47 35 0.45
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (46 bp):
TAATAGTGCCTAGTTACCCATTAGGGTTAAACCTACACGAATCGAA
Found at i:33728001 original size:47 final size:46
Alignment explanation
Indices: 33727876--33728054 Score: 137
Period size: 46 Copynumber: 3.9 Consensus size: 46
33727866 ACGTGAAAGT
* * * * *
33727876 AATAGTGCCTAGTTACCCACTT-GGGTTAAACCTACACGAA-TCGAA
1 AATAGTGCCTAGTCACCC-GTTAGGGTTGAACCTACACAAATTGGAA
** * * * * *
33727921 TAATAGTGTTTGGTCTCCCATTAGGGTTAAACCTACTCAAATTGGAAA
1 -AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAATTGG-AA
* * * *
33727969 AATGGTGCCTAGTTACCCGTTAGGGTTGAACCTACACGAATTGGAT
1 AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAATTGGAA
** * *
33728015 AATAGTGTTTGGTCACCTGTTAGGGTTGAACCTACACAAA
1 AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAA
33728055 AAATAGCCTG
Statistics
Matches: 103, Mismatches: 27, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
45 2 0.02
46 63 0.61
47 36 0.35
48 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (46 bp):
AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAATTGGAA
Found at i:33728039 original size:93 final size:93
Alignment explanation
Indices: 33727880--33728054 Score: 253
Period size: 93 Copynumber: 1.9 Consensus size: 93
33727870 GAAAGTAATA
*
33727880 GTGCCTAGTTACCCACTTGGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCTCCCATTAG
1 GTGCCTAGTTACCCACTTGGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCACCCATTAG
*
33727945 GGTTAAACCTACTCAAATTGGAAAAATG
66 GGTTAAACCTACACAAATTGGAAAAATG
* * * * **
33727973 GTGCCTAGTTACCC-GTTAGGGTTGAACCTACACGAATTGGATAATAGTGTTTGGTCACCTGTTA
1 GTGCCTAGTTACCCACTT-GGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCACCCATTA
*
33728037 GGGTTGAACCTACACAAA
65 GGGTTAAACCTACACAAA
33728055 AAATAGCCTG
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (93 bp):
GTGCCTAGTTACCCACTTGGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCACCCATTAG
GGTTAAACCTACACAAATTGGAAAAATG
Found at i:33728046 original size:46 final size:46
Alignment explanation
Indices: 33727898--33728051 Score: 164
Period size: 46 Copynumber: 3.3 Consensus size: 46
33727888 TTACCCACTT
* * * *
33727898 GGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCTCCCATTA
1 GGGTTAAACCTACACGAATTGGATAATAGTGTTTGGTCACCCGTTA
* * * * ** * *
33727944 GGGTTAAACCTACTCAAATTGGAAAAATGGTGCCTAGTTACCCGTTA
1 GGGTTAAACCTACACGAATTGG-ATAATAGTGTTTGGTCACCCGTTA
* *
33727991 GGGTTGAACCTACACGAATTGGATAATAGTGTTTGGTCACCTGTTA
1 GGGTTAAACCTACACGAATTGGATAATAGTGTTTGGTCACCCGTTA
*
33728037 GGGTTGAACCTACAC
1 GGGTTAAACCTACAC
33728052 AAAAAATAGC
Statistics
Matches: 85, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
46 50 0.59
47 35 0.41
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (46 bp):
GGGTTAAACCTACACGAATTGGATAATAGTGTTTGGTCACCCGTTA
Found at i:33728881 original size:51 final size:49
Alignment explanation
Indices: 33728817--33729108 Score: 198
Period size: 51 Copynumber: 5.8 Consensus size: 49
33728807 TATCGATGAA
*
33728817 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTATCGATAAAT-TTGGT
* * * * * *
33728868 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-
1 CACGTGTGTAGTACTTA-TGAAGGCTACTACGTGTATCGATAA-ATTTG-GT
* * * *
33728919 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGT
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTATCGATAAA-TTTGGT
* * * * * * *
33728970 TACATGTGTGGTACTAAGTGAAGGCTACTATG-GATACCGGA-AAGCTTTGGT
1 CACGTGTGTAGTACTTA-TGAAGGCTACTACGTG-TATC-GATAA-ATTTGGT
* * * * *
33729021 CATGTATGTAGTACTATATGAAGGCTACTATGTG-AGTCG-TAAAACTTGAT
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTA-TCGAT-AAATTTGGT
*
33729071 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTATC
33729109 AAATGATAAA
Statistics
Matches: 183, Mismatches: 42, Indels: 33
0.71 0.16 0.13
Matches are distributed among these distances:
50 41 0.22
51 137 0.75
52 5 0.03
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.31
Consensus pattern (49 bp):
CACGTGTGTAGTACTTATGAAGGCTACTACGTGTATCGATAAATTTGGT
Found at i:33728946 original size:102 final size:101
Alignment explanation
Indices: 33728817--33729106 Score: 340
Period size: 102 Copynumber: 2.9 Consensus size: 101
33728807 TATCGATGAA
33728817 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCG-TAAATAATGGTCACATGTGTAGTAC
*
33728882 TAAGTGAAGGCTACTATGTGTACC-GAGAAGTTTTGAG-
65 TAAGTGAAGGCTACTATGTGTACCGGA-AAGCTTTG-GT
* * * *
33728919 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACT-ATGGTTACATGTGTGGTA
1 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATC-GTAAA-TAATGGTCACATGTGTAGTA
33728983 CTAAGTGAAGGCTACTATG-GATACCGGAAAGCTTTGGT
64 CTAAGTGAAGGCTACTATGTG-TACCGGAAAGCTTTGGT
* * * * * * *
33729021 CATGTATGTAGTACTATATGAAGGCTACTATGTG-AGTCGTAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTA-TCGTAAATA-ATGGTCACATGTGTAGTA
* *
33729084 CTATGTGAAGGCTACTACGTGTA
64 CTAAGTGAAGGCTACTATGTGTA
33729107 TCAAATGATA
Statistics
Matches: 161, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
101 40 0.25
102 117 0.73
103 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCGTAAATAATGGTCACATGTGTAGTACT
AAGTGAAGGCTACTATGTGTACCGGAAAGCTTTGGT
Found at i:33730458 original size:271 final size:271
Alignment explanation
Indices: 33729968--33730510 Score: 1077
Period size: 271 Copynumber: 2.0 Consensus size: 271
33729958 CTATAAGCTT
*
33729968 ACTCCTTTTTATTTTTCTTTTGTTTTATAGTGATATTAATCAACTCGGGAATTGGACGGAGTCAG
1 ACTCCTCTTTATTTTTCTTTTGTTTTATAGTGATATTAATCAACTCGGGAATTGGACGGAGTCAG
33730033 GACATCATCCTCACTATCATCATCATCATCATCATCTTTTGGGTATTTTGCAACCAATACTTTTG
66 GACATCATCCTCACTATCATCATCATCATCATCATCTTTTGGGTATTTTGCAACCAATACTTTTG
33730098 AAAAATGGCATGTATAGATGACTTTATGTAATGTGATATAATTATGTCTGAATATATATAACTGT
131 AAAAATGGCATGTATAGATGACTTTATGTAATGTGATATAATTATGTCTGAATATATATAACTGT
33730163 AATTGGTTGAAAATATTGAAGTTGGTTGAAATTATCTTTGGAAATCTGCAGGGGGTTTTATGTAA
196 AATTGGTTGAAAATATTGAAGTTGGTTGAAATTATCTTTGGAAATCTGCAGGGGGTTTTATGTAA
33730228 AAATAAGCAGA
261 AAATAAGCAGA
33730239 ACTCCTCTTTATTTTTCTTTTGTTTTATAGTGATATTAATCAACTCGGGAATTGGACGGAGTCAG
1 ACTCCTCTTTATTTTTCTTTTGTTTTATAGTGATATTAATCAACTCGGGAATTGGACGGAGTCAG
33730304 GACATCATCCTCACTATCATCATCATCATCATCATCTTTTGGGTATTTTGCAACCAATACTTTTG
66 GACATCATCCTCACTATCATCATCATCATCATCATCTTTTGGGTATTTTGCAACCAATACTTTTG
33730369 AAAAATGGCATGTATAGATGACTTTATGTAATGTGATATAATTATGTCTGAATATATATAACTGT
131 AAAAATGGCATGTATAGATGACTTTATGTAATGTGATATAATTATGTCTGAATATATATAACTGT
33730434 AATTGGTTGAAAATATTGAAGTTGGTTGAAATTATCTTTGGAAATCTGCAGGGGGTTTTATGTAA
196 AATTGGTTGAAAATATTGAAGTTGGTTGAAATTATCTTTGGAAATCTGCAGGGGGTTTTATGTAA
33730499 AAATAAGCAGA
261 AAATAAGCAGA
33730510 A
1 A
33730511 ATGCTGCCGA
Statistics
Matches: 271, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
271 271 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (271 bp):
ACTCCTCTTTATTTTTCTTTTGTTTTATAGTGATATTAATCAACTCGGGAATTGGACGGAGTCAG
GACATCATCCTCACTATCATCATCATCATCATCATCTTTTGGGTATTTTGCAACCAATACTTTTG
AAAAATGGCATGTATAGATGACTTTATGTAATGTGATATAATTATGTCTGAATATATATAACTGT
AATTGGTTGAAAATATTGAAGTTGGTTGAAATTATCTTTGGAAATCTGCAGGGGGTTTTATGTAA
AAATAAGCAGA
Found at i:33736153 original size:51 final size:50
Alignment explanation
Indices: 33736089--33736382 Score: 249
Period size: 51 Copynumber: 5.8 Consensus size: 50
33736079 TATCGATGAA
* * *
33736089 CACGTGTGTAGTACTGTGTGAGGGCTACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-TTGGT
* * * * * *
33736140 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAA-ATTTG-GT
* * * *
33736191 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TTTGGT
* * * * * *
33736242 TACATGTGTGGTACTAAGTGAAGGCTACTA--TGGATACAGGA-AAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTAT-C--GATAA-ATTTGGT
* * * *
33736293 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCGAT-AAATTTGGT
33736343 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
33736383 ATGATAAAAA
Statistics
Matches: 188, Mismatches: 40, Indels: 30
0.73 0.16 0.12
Matches are distributed among these distances:
49 4 0.02
50 42 0.22
51 135 0.72
52 5 0.03
53 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATTTGGT
Found at i:33736265 original size:102 final size:102
Alignment explanation
Indices: 33736089--33736378 Score: 358
Period size: 102 Copynumber: 2.9 Consensus size: 102
33736079 TATCGATGAA
* *
33736089 CACGTGTGTAGTACTGTGTGAGGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACT-ATGGTCACATGTGTAGTA
* *
33736153 CTAAGTGAAGGCTACTATGTGTAC-CGAGAAGTTTTGAG-
65 CTAAGTGAAGGCTACTATGTGTACAGGA-AAGCTTTG-GT
* * *
33736191 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTGGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
33736256 TAAGTGAAGGCTACTATG-GATACAGGAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTG-TACAGGAAAGCTTTGGT
* * * * * *
33736293 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGT-AAACTATGGTCACATGTGTAGTA
* *
33736356 CTATGTGAAGGCTACTACGTGTA
65 CTAAGTGAAGGCTACTATGTGTA
33736379 TCGAATGATA
Statistics
Matches: 164, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
101 38 0.23
102 123 0.75
103 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACAGGAAAGCTTTGGT
Found at i:33739762 original size:25 final size:26
Alignment explanation
Indices: 33739714--33739772 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
33739704 TCTCATCATT
** **
33739714 ATTTTACCCCCAATAACATTTTGATG
1 ATTTTACCCCCAATAACAAATTGACC
*
33739740 ATTTTACCCCCGAT-ACAAATTGACC
1 ATTTTACCCCCAATAACAAATTGACC
33739765 ATTTTACC
1 ATTTTACC
33739773 TCTAGTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (26 bp):
ATTTTACCCCCAATAACAAATTGACC
Found at i:33739998 original size:43 final size:41
Alignment explanation
Indices: 33739937--33740026 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 41
33739927 ATGACTCATT
33739937 TCATTTCCAATTTTAGAAACCTACATTCATTTCCACAAATGAA
1 TCATTTCCAATTTTAGAAACCTACATTCATTT-C-CAAATGAA
* *
33739980 TCATTTCC-ATTTCTAGAAACCTACATTGATTTCCAAATGAT
1 TCATTTCCAATTT-TAGAAACCTACATTCATTTCCAAATGAA
33740021 TCATTT
1 TCATTT
33740027 TTTTCATTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 13 0.30
42 5 0.11
43 26 0.59
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (41 bp):
TCATTTCCAATTTTAGAAACCTACATTCATTTCCAAATGAA
Found at i:33750110 original size:26 final size:26
Alignment explanation
Indices: 33750068--33750141 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
33750058 TCTCATCATT
* * **
33750068 ATTTTACCCCCAATAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGACA
* * * *
33750094 ATTTTATCTCTGGTAAAAATTTGACA
1 ATTTTACCCCTAGTAAAATTTTGACA
33750120 ATTTTACCCCTAGTAAAATTTT
1 ATTTTACCCCTAGTAAAATTTT
33750142 TAGAAAATAT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACA
Found at i:33763686 original size:20 final size:20
Alignment explanation
Indices: 33763663--33763721 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 20
33763653 ATGTCCCTGT
33763663 TTGCACTATGGTGCCTCTGC
1 TTGCACTATGGTGCCTCTGC
* * * * *
33763683 TTGCACAATCGTGTCACTGT
1 TTGCACTATGGTGCCTCTGC
**
33763703 TTGCACTCCGGTGCCTCTG
1 TTGCACTATGGTGCCTCTG
33763722 TTAGCATATA
Statistics
Matches: 28, Mismatches: 11, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.31, G:0.24, T:0.34
Consensus pattern (20 bp):
TTGCACTATGGTGCCTCTGC
Found at i:33765708 original size:18 final size:18
Alignment explanation
Indices: 33765669--33765710 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
33765659 ATTGTGTTTC
33765669 CTTAAAATTTGATTTCTT
1 CTTAAAATTTGATTTCTT
*
33765687 -TTAAAATTATTATTT-TT
1 CTTAAAATT-TGATTTCTT
33765704 CTTAAAA
1 CTTAAAA
33765711 ACTTGAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (18 bp):
CTTAAAATTTGATTTCTT
Found at i:33770137 original size:12 final size:13
Alignment explanation
Indices: 33770113--33770137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33770103 GAGATTTAAA
33770113 TTTATCTTTTTTT
1 TTTATCTTTTTTT
33770126 TTTATCTTTTTT
1 TTTATCTTTTTT
33770138 AATGATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTATCTTTTTTT
Found at i:33777137 original size:17 final size:17
Alignment explanation
Indices: 33777115--33777162 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
33777105 AGTGCATGCA
33777115 GGCTATTTGCATGTTGC
1 GGCTATTTGCATGTTGC
33777132 GGCTATTTGCATGTTGC
1 GGCTATTTGCATGTTGC
* *
33777149 AGCTCTTGTGCATG
1 GGCTATT-TGCATG
33777163 CTACATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.12, C:0.19, G:0.29, T:0.40
Consensus pattern (17 bp):
GGCTATTTGCATGTTGC
Found at i:33779125 original size:21 final size:19
Alignment explanation
Indices: 33779096--33779134 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
33779086 ATAGTTGCAT
33779096 TTCAATTTTCATTTGGCAATA
1 TTCAATTTT-ATTT-GCAATA
*
33779117 TTCATTTTTATTTGCAAT
1 TTCAATTTTATTTGCAAT
33779135 TACAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.54
Consensus pattern (19 bp):
TTCAATTTTATTTGCAATA
Found at i:33786594 original size:61 final size:61
Alignment explanation
Indices: 33786499--33786730 Score: 464
Period size: 61 Copynumber: 3.8 Consensus size: 61
33786489 GCTGCTCTCT
33786499 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAATTCCATTTTCAA
1 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAATTCCATTTTCAA
33786560 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAATTCCATTTTCAA
1 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAATTCCATTTTCAA
33786621 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAATTCCATTTTCAA
1 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAATTCCATTTTCAA
33786682 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAA
1 CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAA
33786731 GCCTTTTATA
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 171 1.00
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.32
Consensus pattern (61 bp):
CAGCTATCATGGAACAAAATAAATAAATAAATTTCATCTCCTTCTCAAATTCCATTTTCAA
Found at i:33797407 original size:27 final size:27
Alignment explanation
Indices: 33797376--33797553 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33797366 TAAATTGTAC
33797376 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33797403 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33797429 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33797457 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33797485 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33797512 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33797539 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33797554 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33797490 original size:82 final size:81
Alignment explanation
Indices: 33797377--33797532 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33797367 AAATTGTACA
* *
33797377 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33797441 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33797458 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33797523 TGCGAGTTGA
65 TGCGAATTGA
33797533 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33797544 original size:82 final size:81
Alignment explanation
Indices: 33797373--33797553 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33797363 GATTAAATTG
* *
33797373 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33797438 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33797454 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33797518 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33797536 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33797554 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33805469 original size:27 final size:27
Alignment explanation
Indices: 33805438--33805615 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33805428 TAAATTGTAC
33805438 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33805465 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33805491 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33805519 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33805547 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33805574 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33805601 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33805616 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33805552 original size:82 final size:81
Alignment explanation
Indices: 33805439--33805594 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33805429 AAATTGTACA
* *
33805439 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33805503 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33805520 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33805585 TGCGAGTTGA
65 TGCGAATTGA
33805595 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33805606 original size:82 final size:81
Alignment explanation
Indices: 33805435--33805615 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33805425 GATTAAATTG
* *
33805435 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33805500 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33805516 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33805580 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33805598 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33805616 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33826214 original size:27 final size:27
Alignment explanation
Indices: 33826181--33826660 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
33826171 TAAATTGTGC
*
33826181 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826208 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826235 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826262 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826289 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826316 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
33826343 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
33826371 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826398 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826425 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
33826453 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
33826481 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
33826509 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
33826537 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33826564 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
33826591 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
33826619 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
33826646 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33826661 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:33826421 original size:82 final size:82
Alignment explanation
Indices: 33826181--33826660 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
33826171 TAAATTGTGC
*
33826181 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
33826245 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
33826262 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
33826326 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
33826343 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
33826408 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
33826425 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
33826490 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
33826509 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
33826574 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
33826591 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
33826656 GTGCG
66 GTGCG
33826661 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:33831353 original size:63 final size:62
Alignment explanation
Indices: 33831256--33831550 Score: 358
Period size: 63 Copynumber: 4.7 Consensus size: 62
33831246 TATGTTACAT
* *
33831256 ATAAATAAATTACGGATTTGCGGAGGTTCGGTGGATGAGTACAGGAATCAAAATTGAAAATTG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTAC-GGAATCAAAATTGAAAATTG
* * * * **
33831319 ATAAATAAATTATGGCTTTGTGAAAGTTCAGTGGATGAGTACGGTAATCAAAATTG-AAATCA
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACGG-AATCAAAATTGAAAATTG
* * * * * * *
33831381 ATGAATAAATTATGGCTTTGTGGAGGTTCCGTGTATAAGCACGAGAATCAAAATTGAAATTTG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACG-GAATCAAAATTGAAAATTG
* * *
33831444 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACAAGAATCAAAACTGAAATTTG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTAC-GGAATCAAAATTGAAAATTG
* * *
33831507 ATAAATAAATTATGGCTTTGCAGAGGATCGATGGATGAGTACGG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACGG
33831551 GAATTAGAAT
Statistics
Matches: 198, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
62 54 0.27
63 144 0.73
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (62 bp):
ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACGGAATCAAAATTGAAAATTG
Found at i:33831453 original size:125 final size:126
Alignment explanation
Indices: 33831256--33831532 Score: 353
Period size: 125 Copynumber: 2.2 Consensus size: 126
33831246 TATGTTACAT
* * * * *
33831256 ATAAATAAATTACGGATTTGCGGAGGTTCGGTGGATGAGTACAGGAATCAAAATTGAAAATTGAT
1 ATAAATAAATTATGGCTTTGCGGAGGTTCCGTGGATAAGCACAGGAATCAAAATTGAAAATTGAT
* * *
33831321 AAATAAATTATGGCTTTGTGAAAGTTCAGTGGATGAGTAC-GGTAATCAAAATTGAAA-TCA
66 AAATAAATTATGGCTTTGCGAAAGTTCAGTGGATGAGTACAAG-AATCAAAACTGAAATTCA
* * * *
33831381 ATGAATAAATTATGGCTTTGTGGAGGTTCCGTGTATAAGCAC-GAGAATCAAAATTGAAATTTGA
1 ATAAATAAATTATGGCTTTGCGGAGGTTCCGTGGATAAGCACAG-GAATCAAAATTGAAAATTGA
* * * **
33831445 TAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACAAGAATCAAAACTGAAATTTG
65 TAAATAAATTATGGCTTTGCGAAAGTTCAGTGGATGAGTACAAGAATCAAAACTGAAATTCA
*
33831507 ATAAATAAATTATGGCTTTGCAGAGG
1 ATAAATAAATTATGGCTTTGCGGAGG
33831533 ATCGATGGAT
Statistics
Matches: 129, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
124 1 0.01
125 103 0.80
126 25 0.19
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.30
Consensus pattern (126 bp):
ATAAATAAATTATGGCTTTGCGGAGGTTCCGTGGATAAGCACAGGAATCAAAATTGAAAATTGAT
AAATAAATTATGGCTTTGCGAAAGTTCAGTGGATGAGTACAAGAATCAAAACTGAAATTCA
Found at i:33844490 original size:42 final size:42
Alignment explanation
Indices: 33844401--33844495 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
33844391 GCAAGTTAGT
* * * * *
33844401 GAGTTACATGGCCTGGCACACGAGCGTGTGCGGCAATTCAGA
1 GAGTTACATGGCCTGGCACACAAACGTGTGCGCCAACTCAAA
* *
33844443 TAGTTACATGGCCTGGCACACAAACGTGTGAC-CCTACTCAAA
1 GAGTTACATGGCCTGGCACACAAACGTGTG-CGCCAACTCAAA
33844485 GAGTTACATGG
1 GAGTTACATGG
33844496 GTGAGAACAC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (42 bp):
GAGTTACATGGCCTGGCACACAAACGTGTGCGCCAACTCAAA
Found at i:33845922 original size:34 final size:35
Alignment explanation
Indices: 33845884--33845951 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
33845874 TTGAGAGAAC
**
33845884 TCTATGAGAGTTAGGG-TTTTGTTTTT-GGGTTTGT
1 TCTATGAGAACTAGGGCTTTT-TTTTTGGGGTTTGT
33845918 TCTATGAGAACTAGGGCTTTTTTTTTGGGGTTTG
1 TCTATGAGAACTAGGGCTTTTTTTTTGGGGTTTG
33845952 GTTTTATACT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
34 19 0.63
35 11 0.37
ACGTcount: A:0.13, C:0.06, G:0.31, T:0.50
Consensus pattern (35 bp):
TCTATGAGAACTAGGGCTTTTTTTTTGGGGTTTGT
Found at i:33854401 original size:43 final size:43
Alignment explanation
Indices: 33854348--33854456 Score: 209
Period size: 43 Copynumber: 2.5 Consensus size: 43
33854338 CAAACTAGTT
*
33854348 CAAACCTTGTTTACTAGGGCCATTCAATATCTTTGTAACCTCC
1 CAAACTTTGTTTACTAGGGCCATTCAATATCTTTGTAACCTCC
33854391 CAAACTTTGTTTACTAGGGCCATTCAATATCTTTGTAACCTCC
1 CAAACTTTGTTTACTAGGGCCATTCAATATCTTTGTAACCTCC
33854434 CAAACTTTGTTTACTAGGGCCAT
1 CAAACTTTGTTTACTAGGGCCAT
33854457 GCGACAAGGC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (43 bp):
CAAACTTTGTTTACTAGGGCCATTCAATATCTTTGTAACCTCC
Found at i:33860825 original size:21 final size:21
Alignment explanation
Indices: 33860767--33860830 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
33860757 TGCCAGTGAT
*
33860767 CAGAATGGCTAAGAGCCATAAA
1 CAGAATAGCTAA-AGCCATAAA
* *
33860789 CAGGATAGCTATAAGCTATAAA
1 CAGAATAGCTA-AAGCCATAAA
33860811 CAGAAT-GCTACAAGCCATAA
1 CAGAATAGCTA-AAGCCATAA
33860831 GTACAGTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 12 0.34
22 22 0.63
23 1 0.03
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.17
Consensus pattern (21 bp):
CAGAATAGCTAAAGCCATAAA
Found at i:33860895 original size:32 final size:32
Alignment explanation
Indices: 33860822--33860929 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 32
33860812 AGAATGCTAC
* * *
33860822 AAGCCATAAGTA-CAGTAATATGATTGGCAAA
1 AAGCCATCAGTAGCAGTAATATGATCGGCACA
*
33860853 AAGTCC-TCAGTAGCAGTGATATGATCGGCACA
1 AAG-CCATCAGTAGCAGTAATATGATCGGCACA
* * *
33860885 CAA-CCATCAGTAACGGTAATATGATTGGCACA
1 -AAGCCATCAGTAGCAGTAATATGATCGGCACA
33860917 AAGCCATCAGTAG
1 AAGCCATCAGTAG
33860930 TATCGCAACA
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
31 12 0.19
32 49 0.78
33 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAGCAGTAATATGATCGGCACA
Found at i:33861005 original size:27 final size:26
Alignment explanation
Indices: 33860966--33861031 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
33860956 TATTGCAATA
* *
33860966 AAGCAACCCGTAACAGT-ATATGTGGCC
1 AAGCCACCAGTAACAGTGAT-TGTGG-C
*
33860993 AAGCCACCAGTAATAGTGATTGTGGC
1 AAGCCACCAGTAACAGTGATTGTGGC
33861019 AGAGCCACCAGTA
1 A-AGCCACCAGTA
33861032 CAATACTTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 2 0.06
27 30 0.88
28 2 0.06
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.18
Consensus pattern (26 bp):
AAGCCACCAGTAACAGTGATTGTGGC
Found at i:33861171 original size:24 final size:24
Alignment explanation
Indices: 33861138--33861208 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
33861128 AGTCATACCA
*
33861138 ATCACAGACAAATCAGTCATTTAC
1 ATCACAGACAAATCAATCATTTAC
* * * *
33861162 ATCTCGGACAAATTAATCACTTAC
1 ATCACAGACAAATCAATCATTTAC
33861186 ATCACAGACAAATCAATCATTTA
1 ATCACAGACAAATCAATCATTTA
33861209 ACTTGATGGG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (24 bp):
ATCACAGACAAATCAATCATTTAC
Found at i:33861368 original size:26 final size:27
Alignment explanation
Indices: 33861305--33861357 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
33861295 GAGGCATCAT
*
33861305 AGTCATTTTACCCTACAAGGGCATTAC
1 AGTCATTTTACCCTACAAGGGCAATAC
*
33861332 AGTCATTTTACCCTA-TAGGGCAATAC
1 AGTCATTTTACCCTACAAGGGCAATAC
33861358 GATTATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (27 bp):
AGTCATTTTACCCTACAAGGGCAATAC
Found at i:33861392 original size:27 final size:27
Alignment explanation
Indices: 33861362--33861695 Score: 310
Period size: 27 Copynumber: 12.4 Consensus size: 27
33861352 CAATACGATT
* * *
33861362 ATTTTACTCTTCGAGGGTATTTTAGTA
1 ATTTTACCCATCGAGGGTATTTTCGTA
33861389 ATTTTACCCATCGAGGGTA-TTTCGATA
1 ATTTTACCCATCGAGGGTATTTTCG-TA
*
33861416 ATTTTACCCATCAAGGGTA-TTTCGATA
1 ATTTTACCCATCGAGGGTATTTTCG-TA
*
33861443 ATTTTACCCATCGAGGATA-TTTCAGTA
1 ATTTTACCCATCGAGGGTATTTTC-GTA
* * * *
33861470 ATTTTACCTATCAACGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTTCGTA
*
33861497 ATTTTACCTATCGAGGGTA-TTTCGATA
1 ATTTTACCCATCGAGGGTATTTTCG-TA
*
33861524 ATTTTACCCATCAAGGGTA-TTTCGATA
1 ATTTTACCCATCGAGGGTATTTTCG-TA
* * *
33861551 ATTTTACCTATCGAGGATA-TTTCAATA
1 ATTTTACCCATCGAGGGTATTTTC-GTA
* *
33861578 ATTTTACCCATCGACGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTTCGTA
* *
33861605 ATTTTACCCATCTAGGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTTCGTA
* * *
33861632 ATTTTACCCTTTGGGGGTA-TTTCGATA
1 ATTTTACCCATCGAGGGTATTTTCG-TA
**
33861659 ATTTTACCTTTC-AGGGGTA-TTTCGGTA
1 ATTTTACCCATCGA-GGGTATTTTC-GTA
33861686 A-TTTACCCAT
1 ATTTTACCCAT
33861696 GAATTGCACA
Statistics
Matches: 261, Mismatches: 37, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
26 19 0.07
27 234 0.90
28 8 0.03
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTTCGTA
Found at i:33861433 original size:54 final size:54
Alignment explanation
Indices: 33861357--33861695 Score: 357
Period size: 54 Copynumber: 6.3 Consensus size: 54
33861347 TAGGGCAATA
* * * * *
33861357 CGATTATTTTACTCTTCGAGGGTATTTTAGTAATTTTACCCATCGAGGGTATTT
1 CGATAATTTTACCCATCAAGGGTATTTTCGTAATTTTACCCATCGAGGGTATTT
*
33861411 CGATAATTTTACCCATCAAGGGTA-TTTCGATAATTTTACCCATCGAGGATATTT
1 CGATAATTTTACCCATCAAGGGTATTTTCG-TAATTTTACCCATCGAGGGTATTT
* * * *
33861465 C-AGTAATTTTACCTATCAACGGTATTTTGGTAATTTTACCTATCGAGGGTATTT
1 CGA-TAATTTTACCCATCAAGGGTATTTTCGTAATTTTACCCATCGAGGGTATTT
* *
33861519 CGATAATTTTACCCATCAAGGGTA-TTTCGATAATTTTACCTATCGAGGATATTT
1 CGATAATTTTACCCATCAAGGGTATTTTCG-TAATTTTACCCATCGAGGGTATTT
* * * * *
33861573 CAATAATTTTACCCATCGACGGTATTTTGGTAATTTTACCCATCTAGGGTATTT
1 CGATAATTTTACCCATCAAGGGTATTTTCGTAATTTTACCCATCGAGGGTATTT
* * * *** **
33861627 TGGTAATTTTACCCTTTGGGGGTA-TTTCGATAATTTTACCTTTC-AGGGGTATTT
1 CGATAATTTTACCCATCAAGGGTATTTTCG-TAATTTTACCCATCGA-GGGTATTT
*
33861681 CGGTAA-TTTACCCAT
1 CGATAATTTTACCCAT
33861696 GAATTGCACA
Statistics
Matches: 243, Mismatches: 34, Indels: 17
0.83 0.12 0.06
Matches are distributed among these distances:
53 22 0.09
54 212 0.87
55 9 0.04
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (54 bp):
CGATAATTTTACCCATCAAGGGTATTTTCGTAATTTTACCCATCGAGGGTATTT
Found at i:33861680 original size:108 final size:108
Alignment explanation
Indices: 33861362--33861695 Score: 474
Period size: 108 Copynumber: 3.1 Consensus size: 108
33861352 CAATACGATT
* * * *
33861362 ATTTTACTCTTCGAGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCAT
1 ATTTTACCCATCGACGGTATTTTGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCAT
*
33861427 CAAGGGTATTTCGATAATTTTACCCATCGAGGATATTTCAGTA
66 CAAGGGTATTTCGATAATTTTACCTATCGAGGATATTTCAGTA
* * *
33861470 ATTTTACCTATCAACGGTATTTTGGTAATTTTACCTATCGAGGGTATTTCGATAATTTTACCCAT
1 ATTTTACCCATCGACGGTATTTTGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCAT
*
33861535 CAAGGGTATTTCGATAATTTTACCTATCGAGGATATTTCAATA
66 CAAGGGTATTTCGATAATTTTACCTATCGAGGATATTTCAGTA
* * * *
33861578 ATTTTACCCATCGACGGTATTTTGGTAATTTTACCCATCTAGGGTATTTTGGTAATTTTACCCTT
1 ATTTTACCCATCGACGGTATTTTGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCAT
*** * * *
33861643 TGGGGGTATTTCGATAATTTTACCTTTC-AGGGGTATTTCGGTA
66 CAAGGGTATTTCGATAATTTTACCTATCGA-GGATATTTCAGTA
33861686 A-TTTACCCAT
1 ATTTTACCCAT
33861696 GAATTGCACA
Statistics
Matches: 202, Mismatches: 23, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
107 10 0.05
108 192 0.95
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41
Consensus pattern (108 bp):
ATTTTACCCATCGACGGTATTTTGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCAT
CAAGGGTATTTCGATAATTTTACCTATCGAGGATATTTCAGTA
Found at i:33867375 original size:16 final size:18
Alignment explanation
Indices: 33867340--33867377 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
33867330 ATCCTTATTT
33867340 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
33867358 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
33867374 AAAT
1 AAAT
33867378 CCCTATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:33872123 original size:416 final size:416
Alignment explanation
Indices: 33870700--33872363 Score: 2947
Period size: 416 Copynumber: 4.0 Consensus size: 416
33870690 AAGAAAGATC
33870700 ATTTAATCGATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
1 ATTTAATCGATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
* *
33870765 GATTGAGGCGTACTTACCAATTCTTGGTTAGTATTTGGAATGTTTCTATTGACAATTTTGTTTCT
66 GATTGAGGCGTACTTACCAATTCTTGGTTAGTACTTGGAATGTTTCTATTGACAATTTCGTTTCT
* * * * * *
33870830 GGTAGAACGACAAGATAACAAGGATTGACTTTGATTCCAGAAAAAATAATAATAATTCAACAACA
131 GGTAGAACAACGAGTTAACAAGGATTGACTTTGATTCAAGAAAAAACAATAAAAATTCAACAACA
* * * * *
33870895 AAATCATGAAAATTTTGATGTAAAAGAGAGGAAAGAAGAGAAATAAATAGGGACGTGAAAGAAAT
196 AAATCATGAAAAATTTGATGTAAAAGAGAGGAAAGAAGAGAAAAAAACAAGGAGGTGAAAGAAAT
33870960 TCTATTTGGTTTTGAAGAGAACATAATCCTTGTTCAAATTGGGTAAAGTTGGATTAAAAATATAG
261 TCTATTTGGTTTTGAAGAGAACATAATCCTTGTTC-AATTGGGTAAAGTTGGATTAAAAATATAG
*
33871025 GGTTTGGGAACCATA-GGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCATAAAATTTAAAGATA
325 GGTTTGGGAACCATAGGGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCGTAAAATTTAAAGATA
33871089 AATTTAGAATAAAAATAAAACGGACGA
390 AATTTAGAATAAAAATAAAACGGACGA
* *
33871116 ATTTAATCGATCACAATATTATTGTTAGATAGAAATCATATAATGATTCGAGATCTAAACGTCGA
1 ATTTAATCGATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
*
33871181 GATTGAGACGTACTTACCAATTCTTGGTTAGTACTTGGAATGTTTCTATTGACAATTTCGTTTCT
66 GATTGAGGCGTACTTACCAATTCTTGGTTAGTACTTGGAATGTTTCTATTGACAATTTCGTTTCT
33871246 GGTAGAACAACGAGTTAACAAGGATTGACTTTGATTCAAGAAAAAACAATAAAAATTCAACAACA
131 GGTAGAACAACGAGTTAACAAGGATTGACTTTGATTCAAGAAAAAACAATAAAAATTCAACAACA
*
33871311 AAATCATGAAAAATTTGGTGTAAAAGAGAGGAAAGAAGAGAAAAAAAACAAGGAGGTGAAAGAAA
196 AAATCATGAAAAATTTGATGTAAAAGAGAGGAAAGAAGAG-AAAAAAACAAGGAGGTGAAAGAAA
*
33871376 TTCTATTTGGTTTTGCAGAGAACATAATCCTTGTTCAATTGGGTAAAGTTGGATTAAAAATATAG
260 TTCTATTTGGTTTTGAAGAGAACATAATCCTTGTTCAATTGGGTAAAGTTGGATTAAAAATATAG
* *
33871441 GGTTTGGGAACCCTAGGGCGTCAGGAGCAATTTTCCCAAAGTTTTGGGCGTAAAATTTAAAGATA
325 GGTTTGGGAACCATAGGGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCGTAAAATTTAAAGATA
*
33871506 AATTTAGAATAAAAATAAAACGGACAA
390 AATTTAGAATAAAAATAAAACGGACGA
*
33871533 ATTTAATCTATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
1 ATTTAATCGATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
33871598 GATTGAGGCGTACTTACCAATTCTTGGTTAGTACTTGGAATGTTTCTATTGACAATTTCGTTTCT
66 GATTGAGGCGTACTTACCAATTCTTGGTTAGTACTTGGAATGTTTCTATTGACAATTTCGTTTCT
33871663 GGTAGAACAACGAGTTAACAAGGATTGACTTTGATTCAAGAAAAAACAATAAAAATTCAACAACA
131 GGTAGAACAACGAGTTAACAAGGATTGACTTTGATTCAAGAAAAAACAATAAAAATTCAACAACA
*
33871728 AAATCATGAAAAATTTGGTGTAAAAGAGAGGAAAGAAGAGAAAAAAAACAAGGAGGTGAAAGAAA
196 AAATCATGAAAAATTTGATGTAAAAGAGAGGAAAGAAGAG-AAAAAAACAAGGAGGTGAAAGAAA
*
33871793 TTCTATTTGGTTTTGCAGAGAACATAATCCTTGTTCAATTGGGTAAAGTTGGATTAAAAATATAG
260 TTCTATTTGGTTTTGAAGAGAACATAATCCTTGTTCAATTGGGTAAAGTTGGATTAAAAATATAG
33871858 GGTTTGGGAACCATA-GGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCGTAAAATTTAAAGATA
325 GGTTTGGGAACCATAGGGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCGTAAAATTTAAAGATA
33871922 AATTTAGAATAAAAATAAAACGGACGA
390 AATTTAGAATAAAAATAAAACGGACGA
33871949 ATTTAATCGATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
1 ATTTAATCGATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
* *
33872014 GATTGAGGCGTACTTACCAATTCTTGGTTAGTATTTGGAATGTTTCTATTGACAATTTCATTTCT
66 GATTGAGGCGTACTTACCAATTCTTGGTTAGTACTTGGAATGTTTCTATTGACAATTTCGTTTCT
* *
33872079 GGTAGAACAATGAGTTAACAAGGATTGACTTTGATTCCAGAAAAAACAATAAAAATTCAACAACA
131 GGTAGAACAACGAGTTAACAAGGATTGACTTTGATTCAAGAAAAAACAATAAAAATTCAACAACA
* * * *
33872144 AAATCATGAAAATTTTGATGTAAAAGAGAGAAAAGAAGAG-AAAAAATAGGGAGGTGAAAGAAAT
196 AAATCATGAAAAATTTGATGTAAAAGAGAGGAAAGAAGAGAAAAAAACAAGGAGGTGAAAGAAAT
*
33872208 TCTATTTGGTTTTGAAGAGAACATAATCCTTGTTCAATTGGGTATAGTTGGATTAAAAATATAGG
261 TCTATTTGGTTTTGAAGAGAACATAATCCTTGTTCAATTGGGTAAAGTTGGATTAAAAATATAGG
* *
33872273 GTTTGGGAACCCTAGGGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCCTAAAATTTAAAGATAA
326 GTTTGGGAACCATAGGGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCGTAAAATTTAAAGATAA
*
33872338 ATTTAGAATAAAAATAAAAGGGACGA
391 ATTTAGAATAAAAATAAAACGGACGA
33872364 TTTGATGTTA
Statistics
Matches: 1201, Mismatches: 44, Indels: 7
0.96 0.04 0.01
Matches are distributed among these distances:
414 98 0.08
415 74 0.06
416 566 0.47
417 463 0.39
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (416 bp):
ATTTAATCGATCACAATATTATTGTTAGATAGAAGTCATATAGTGATTCGAGATCTAAACGTCGA
GATTGAGGCGTACTTACCAATTCTTGGTTAGTACTTGGAATGTTTCTATTGACAATTTCGTTTCT
GGTAGAACAACGAGTTAACAAGGATTGACTTTGATTCAAGAAAAAACAATAAAAATTCAACAACA
AAATCATGAAAAATTTGATGTAAAAGAGAGGAAAGAAGAGAAAAAAACAAGGAGGTGAAAGAAAT
TCTATTTGGTTTTGAAGAGAACATAATCCTTGTTCAATTGGGTAAAGTTGGATTAAAAATATAGG
GTTTGGGAACCATAGGGCGTCAAGAGCAATTTTCCCAAAGTTTTGGGCGTAAAATTTAAAGATAA
ATTTAGAATAAAAATAAAACGGACGA
Found at i:33880976 original size:59 final size:58
Alignment explanation
Indices: 33880884--33881202 Score: 297
Period size: 59 Copynumber: 5.5 Consensus size: 58
33880874 AACGGCGTAT
* *
33880884 TGACGATCATCGAATTGTGAAAAGGGATAGCTTCGGCTATCTGTTATGAAAAGGGATGG
1 TGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATC-GTTATGAAAAGGGATGG
* *
33880943 TGACGACCATTGAATTATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGG
1 TGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATC-GTTATGAAAAGGGATGG
* * * * *** * * **
33881002 TGATGACCATC-AACTATGAAAAGGGTTGGAGACGACCATCGAATTATGAAAAGGGATAC
1 TGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATCG--TTATGAAAAGGGATGG
** * * * * * * **
33881061 T-TTGGCTAACG-ATTATGAAAAGGGAT-GGTGACGGCCATCAACTATGAAAAGGGATGG
1 TGACGACCATCGAATTATGAAAAGGGATAGCT-TCGGCTATC-GTTATGAAAAGGGATGG
* *
33881118 TGATGACCATCGAATTATGAAAAGGCATAGCTTCGGCTATCGATTATGAAAAGGGATGG
1 TGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATCG-TTATGAAAAGGGATGG
33881177 TGACGACCATC-AATTATGAAAAGGGA
1 TGACGACCATCGAATTATGAAAAGGGA
33881203 CGGTGACGGC
Statistics
Matches: 208, Mismatches: 43, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
57 15 0.07
58 67 0.32
59 124 0.60
60 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (58 bp):
TGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATCGTTATGAAAAGGGATGG
Found at i:33880997 original size:29 final size:29
Alignment explanation
Indices: 33880927--33881217 Score: 232
Period size: 29 Copynumber: 10.0 Consensus size: 29
33880917 CGGCTATCTG
* *
33880927 TTATGAAAAGGGATGGTGACGACCATTGAA
1 TTATGAAAAGGGATGGTGTCGACCA-TCAA
* * *
33880957 TTATGAAAAGGGATAGCT-TCGGCTATCAA
1 TTATGAAAAGGGAT-GGTGTCGACCATCAA
33880986 TTATGAAAAGGGATGGTGAT-GACCATCAA
1 TTATGAAAAGGGATGGTG-TCGACCATCAA
* * * *
33881015 CTATGAAAAGGGTTGGAGACGACCATCGAA
1 TTATGAAAAGGGATGGTGTCGACCATC-AA
** * * * * *
33881045 TTATGAAAAGGGATACT-TTGGCTAACGA
1 TTATGAAAAGGGATGGTGTCGACCATCAA
* *
33881073 TTATGAAAAGGGATGGTGACGGCCATCAA
1 TTATGAAAAGGGATGGTGTCGACCATCAA
*
33881102 CTATGAAAAGGGATGGTGAT-GACCATCGAA
1 TTATGAAAAGGGATGGTG-TCGACCATC-AA
* * * * *
33881132 TTATGAAAAGGCATAGCT-TCGGCTATCGA
1 TTATGAAAAGGGAT-GGTGTCGACCATCAA
*
33881161 TTATGAAAAGGGATGGTGACGACCATCAA
1 TTATGAAAAGGGATGGTGTCGACCATCAA
* * *
33881190 TTATGAAAAGGGACGGTGACGGCCATCA
1 TTATGAAAAGGGATGGTGTCGACCATCA
33881218 TGATTAGACT
Statistics
Matches: 203, Mismatches: 47, Indels: 23
0.74 0.17 0.08
Matches are distributed among these distances:
28 20 0.10
29 127 0.63
30 52 0.26
31 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (29 bp):
TTATGAAAAGGGATGGTGTCGACCATCAA
Found at i:33881050 original size:88 final size:88
Alignment explanation
Indices: 33880928--33881216 Score: 454
Period size: 88 Copynumber: 3.3 Consensus size: 88
33880918 GGCTATCTGT
* *
33880928 TATGAAAAGGGATGGTGACGACCATTGAATTATGAAAAGGGATAGCTTCGGCTATCAATTATGAA
1 TATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
*
33880993 AAGGGATGGTGATGACCATCAAC
66 AAGGGATGGTGACGACCATCAAC
* * * *
33881016 TATGAAAAGGGTTGGAGACGACCATCGAATTATGAAAAGGGATA-CTTTGGCTAACGATTATGAA
1 TATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
*
33881080 AAGGGATGGTGACGGCCATCAAC
66 AAGGGATGGTGACGACCATCAAC
* *
33881103 TATGAAAAGGGATGGTGATGACCATCGAATTATGAAAAGGCATAGCTTCGGCTATCGATTATGAA
1 TATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
*
33881168 AAGGGATGGTGACGACCATCAAT
66 AAGGGATGGTGACGACCATCAAC
* *
33881191 TATGAAAAGGGACGGTGACGGCCATC
1 TATGAAAAGGGATGGTGACGACCATC
33881217 ATGATTAGAC
Statistics
Matches: 181, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 78 0.43
88 103 0.57
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.22
Consensus pattern (88 bp):
TATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
AAGGGATGGTGACGACCATCAAC
Found at i:33885145 original size:39 final size:39
Alignment explanation
Indices: 33885098--33885189 Score: 139
Period size: 39 Copynumber: 2.4 Consensus size: 39
33885088 GCTATTAGGA
33885098 GTACTGAAGTACAACAGGGGCACGTAAGTGCGATCACGG
1 GTACTGAAGTACAACAGGGGCACGTAAGTGCGATCACGG
* * * *
33885137 GTATTGAAGTACAACTGGGGCACGTAAGTGTGATCAGGG
1 GTACTGAAGTACAACAGGGGCACGTAAGTGCGATCACGG
*
33885176 GTACCGAAGTACAA
1 GTACTGAAGTACAA
33885190 TAGTTTTCTA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.32, C:0.17, G:0.33, T:0.18
Consensus pattern (39 bp):
GTACTGAAGTACAACAGGGGCACGTAAGTGCGATCACGG
Found at i:33889038 original size:27 final size:26
Alignment explanation
Indices: 33888510--33889027 Score: 500
Period size: 27 Copynumber: 19.3 Consensus size: 26
33888500 CAAAATAGGT
*
33888510 AAATGACCGAAATA-CCCCATAGGATA
1 AAATGA-CGAAATACCCCCATAGGGTA
*
33888536 AAATGACCAAAATA-CCCCATAGGGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
* * *
33888562 GAATGACCGAAATACTCCCATAAGGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
* *
33888589 AAATGACTGAAATACTCCTATAGGGTA
1 AAATGAC-GAAATACCCCCATAGGGTA
* * *
33888616 AAATGATCGAAATAACCCTATAGGATA
1 AAATGA-CGAAATACCCCCATAGGGTA
* * *
33888643 AAATGATCGAAATAACCCAATAGAGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
*
33888670 AAATGACCGAAATACCCCCATAGAGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
* * *
33888697 GAATGATTGAAATACCCTCATAGGGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
* *
33888724 AAATGACTAAAATACCCTCATAGGGTA
1 AAATGAC-GAAATACCCCCATAGGGTA
33888751 AAATGATCGAAATACCCCCATAGGGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
* *
33888778 AAATAACCGAAATACCCCCATAGGATA
1 AAATGA-CGAAATACCCCCATAGGGTA
* * *
33888805 GAATGACTCAAATACCTCCATAGGGTA
1 AAATGAC-GAAATACCCCCATAGGGTA
*
33888832 AAATGAACGAAATACCCTCATAGGGTA
1 AAATG-ACGAAATACCCCCATAGGGTA
*
33888859 AAATGATCGAAATACCCTCATAGGGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
* * * *
33888886 AAATGACCAAAATACCCCCAAAAGATA
1 AAATGA-CGAAATACCCCCATAGGGTA
* * *
33888913 AAATGACCAAAATACCCCTATAAGGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
33888940 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGA-CGAAATACCCCCATAGGGTA
* * ** *
33888967 AAATAACCAAAATACCCCTGTAGGTTA
1 AAATGA-CGAAATACCCCCATAGGGTA
*
33888994 AAATGAACGAAATACCCCCATAGGGTT
1 AAATG-ACGAAATACCCCCATAGGGTA
33889021 AAATGAC
1 AAATGAC
33889028 TATTATACCC
Statistics
Matches: 420, Mismatches: 63, Indels: 18
0.84 0.13 0.04
Matches are distributed among these distances:
26 41 0.10
27 374 0.89
28 5 0.01
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (26 bp):
AAATGACGAAATACCCCCATAGGGTA
Found at i:33889040 original size:108 final size:108
Alignment explanation
Indices: 33888510--33889028 Score: 586
Period size: 108 Copynumber: 4.8 Consensus size: 108
33888500 CAAAATAGGT
* * * *
33888510 AAATGACCGAAATA-CCCCATAGGATAAAATGACCAAAATACCCC-ATAGGGTAGAATGACCGAA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAATGACCGAA
* * *
33888573 ATACTCCCATAAGGTAAAATGACTGAAATACTCCTATAGGGTA
66 ATACCCCCATAAGGTTAAATGACTGAAATACCCCTATAGGGTA
* * * * * * *
33888616 AAATGATCGAAATAACCCTATAGGATAAAATGATCGAAATAACCCAATAGAGTAAAATGACCGAA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAATGACCGAA
*
33888681 ATACCCCCAT-AGAG-TAGAATGATTGAAATA-CCCTCATAGGGTA
66 ATACCCCCATAAG-GTTA-AATGACTGAAATACCCCT-ATAGGGTA
** * * *
33888724 AAATGACTAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATAACCGAA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAATGACCGAA
* *
33888789 ATACCCCCAT-AGGATAGAATGACTCAAATACCTCC-ATAGGGTA
66 ATACCCCCATAAGGTTA-AATGACTGAAATACC-CCTATAGGGTA
* * *
33888832 AAATGAACGAAATACCCTCATAGGGTAAAATGATCGAAATA-CCCTCATAGGGTAAAATGACCAA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCT-ATAGGGTAAAATGACCGA
* * * ** *
33888896 AATACCCCCAAAAGATAAAATGACCAAAATACCCCTATAAGGTA
65 AATACCCCCATAAGGTTAAATGACTGAAATACCCCTATAGGGTA
* * * * * *
33888940 AAATGACCGAAATACCCCCATAGGGTAAAATAACCAAAATACCCCTGTAGGTTAAAATGAACGAA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAATGACCGAA
*
33889005 ATACCCCCATAGGGTTAAATGACT
66 ATACCCCCATAAGGTTAAATGACT
33889029 ATTATACCCC
Statistics
Matches: 350, Mismatches: 51, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
106 13 0.04
107 38 0.11
108 289 0.83
109 8 0.02
110 2 0.01
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (108 bp):
AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAATGACCGAA
ATACCCCCATAAGGTTAAATGACTGAAATACCCCTATAGGGTA
Found at i:33889581 original size:34 final size:33
Alignment explanation
Indices: 33889508--33889573 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 33
33889498 TGTTACTGTT
* **
33889508 ATGGGCGAAGGCCCCACTGATACTATTATTGAA
1 ATGGGCAAAGGCCCCACTGATACTAGCATTGAA
*
33889541 ATTGGGCAAAGGCCCTACTGATTACTAGCATTG
1 A-TGGGCAAAGGCCCCACTGA-TACTAGCATTG
33889574 TGATGGGCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 1 0.04
34 17 0.63
35 9 0.33
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (33 bp):
ATGGGCAAAGGCCCCACTGATACTAGCATTGAA
Found at i:33890505 original size:43 final size:43
Alignment explanation
Indices: 33890457--33890540 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
33890447 CATTAGGGGG
* * *
33890457 AGAGTT-ATAACAGCCCGTTTTTAGTTAAATCAAAATAGTGGAA
1 AGAGTTGA-AACAGCCCGTTTTGAGTGAAATCAAAACAGTGGAA
* *
33890500 AGAGTTGAAATAGCCCGTTTTGAGTGAAATCGAAACAGTGG
1 AGAGTTGAAACAGCCCGTTTTGAGTGAAATCAAAACAGTGG
33890541 TTTTGGGACC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (43 bp):
AGAGTTGAAACAGCCCGTTTTGAGTGAAATCAAAACAGTGGAA
Found at i:33897558 original size:40 final size:40
Alignment explanation
Indices: 33897310--33897570 Score: 193
Period size: 40 Copynumber: 6.5 Consensus size: 40
33897300 AATTATTGTA
* * * * * **
33897310 TGATTGGACAAACATGCCCCTCTTTGTACTTCGGTACAAC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* * * **
33897350 TGATTCCACATACGTGCCCTTGTTTGCACTTCAGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* * * * * *
33897390 TGACTACACATACGTACCCCTATTGGTACTTTGGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* * *
33897430 TGATTGCACATATGTTCCCCT-TTCTGTACTTTGGTACCCT
1 TGATTGCACATACGTGCCCCTGTT-TGTACTTTGGTACCCC
* * * ** * *
33897470 TGATTGCTCACACGTGCCTCTGTTTGTA-TTTCATTATCGC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTT-GGTACCCC
*
33897510 TGATTGCACATACGTGCCCCTGTTTATACTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* * * *
33897550 TAAATGCACTTTCGTGCCCCT
1 TGATTGCACATACGTGCCCCT
33897571 ATTTATGCTC
Statistics
Matches: 170, Mismatches: 47, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
39 5 0.03
40 160 0.94
41 5 0.03
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
Found at i:33902481 original size:12 final size:12
Alignment explanation
Indices: 33902464--33902490 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33902454 ATTCCGAAGT
33902464 ATATATATATAC
1 ATATATATATAC
33902476 ATATATATATAC
1 ATATATATATAC
33902488 ATA
1 ATA
33902491 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:33903005 original size:27 final size:27
Alignment explanation
Indices: 33902974--33903151 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33902964 TAAATTGTAC
33902974 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33903001 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33903027 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33903055 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33903083 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33903110 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33903137 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33903152 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33903088 original size:82 final size:81
Alignment explanation
Indices: 33902975--33903130 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33902965 AAATTGTACA
* *
33902975 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33903039 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33903056 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33903121 TGCGAGTTGA
65 TGCGAATTGA
33903131 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33903142 original size:82 final size:81
Alignment explanation
Indices: 33902971--33903151 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33902961 GATTAAATTG
* *
33902971 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33903036 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33903052 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33903116 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33903134 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33903152 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33905520 original size:16 final size:17
Alignment explanation
Indices: 33905485--33905520 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
33905475 TATTAAAATG
33905485 GTACCGTTTGAAGCTTT
1 GTACCGTTTGAAGCTTT
33905502 GTACCGTTTGAAG-TTT
1 GTACCGTTTGAAGCTTT
33905518 GTA
1 GTA
33905521 TTTGATCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (17 bp):
GTACCGTTTGAAGCTTT
Found at i:33909510 original size:17 final size:17
Alignment explanation
Indices: 33909488--33909520 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33909478 ACTATTGAAA
*
33909488 ATTAAATTCATTAATAC
1 ATTAAATTCATAAATAC
33909505 ATTAAATTCATAAATA
1 ATTAAATTCATAAATA
33909521 GTCCTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTAAATTCATAAATAC
Found at i:33910515 original size:16 final size:16
Alignment explanation
Indices: 33910470--33910517 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
33910460 GTTATTTTAT
33910470 AAGTTAAATAATAA-TA
1 AAGTTAAA-AATAAGTA
*
33910486 AAGTAAAGAAAATAAGTA
1 AAGT-TA-AAAATAAGTA
33910504 AAGTTAAAAATAAG
1 AAGTTAAAAATAAG
33910518 AAAACATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 12 0.44
17 7 0.26
18 8 0.30
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (16 bp):
AAGTTAAAAATAAGTA
Found at i:33917002 original size:17 final size:17
Alignment explanation
Indices: 33916980--33917018 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
33916970 GTGAAAACGA
33916980 GTAAATTGACATAATCG
1 GTAAATTGACATAATCG
33916997 GTAAATTGACATAATCG
1 GTAAATTGACATAATCG
33917014 GTAAA
1 GTAAA
33917019 ATACCTAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (17 bp):
GTAAATTGACATAATCG
Found at i:33917640 original size:50 final size:50
Alignment explanation
Indices: 33917528--33917723 Score: 221
Period size: 50 Copynumber: 3.8 Consensus size: 50
33917518 ATTTGGGTAA
* *
33917528 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATG
* * *
33917584 AGAGGTCTCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
33917634 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
33917684 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
33917724 TAGTACAAGA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 79 0.65
52 1 0.01
53 2 0.02
55 1 0.01
56 38 0.31
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:33924061 original size:21 final size:21
Alignment explanation
Indices: 33924019--33924062 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
33924009 TAACCTATAA
* *
33924019 AAATTGTTAACAATATTATTT
1 AAATTGTTAAAAATAATATTT
33924040 AAATTGTTAAAAAATAAT-TTT
1 AAATTGTT-AAAAATAATATTT
33924061 AA
1 AA
33924063 TGTTCAAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (21 bp):
AAATTGTTAAAAATAATATTT
Found at i:33924111 original size:16 final size:16
Alignment explanation
Indices: 33924090--33924120 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33924080 ATTTTTGTAG
*
33924090 TTTTAATATTAAATAT
1 TTTTAAGATTAAATAT
33924106 TTTTAAGATTAAATA
1 TTTTAAGATTAAATA
33924121 AAATTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAAGATTAAATAT
Found at i:33925811 original size:17 final size:17
Alignment explanation
Indices: 33925778--33925815 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
33925768 TACCTCTAGT
33925778 ATTCAATTTAGTCCAAA
1 ATTCAATTTAGTCCAAA
*
33925795 ATTCATATTTA-TGCAAA
1 ATTCA-ATTTAGTCCAAA
33925812 ATTC
1 ATTC
33925816 TCATTTTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.39
Consensus pattern (17 bp):
ATTCAATTTAGTCCAAA
Found at i:33928838 original size:703 final size:703
Alignment explanation
Indices: 33926621--33932481 Score: 5161
Period size: 703 Copynumber: 8.2 Consensus size: 703
33926611 TAAAATTTAC
* * * * * * *
33926621 TCGTCAGACTTGTGGTCCCGAAACCACTATTTTAATTTCACTAAAAACGGGCTATTACAACTCTC
1 TCGTCAGATTTGTGGTCCCGAAACCACTATTTCAACTTCACTGAAAATGGGCTGTTACAACTTTC
* * * *
33926686 CCCCTAAAGGAATTTTCATCCCCGAAAATCTTACCAAAAAATAAGTTCAAGTATTGAACTTTCAT
66 CCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCAT
** * *
33926751 AGCTTCTTCCAGTTCCCAGGCAGCCTCTTCTATTCCGTGTTGTTGCCAAAGAACTTTGACTAAAG
131 AGCTTCTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAG
* * * * * * *
33926816 TTATACTTTTATTTCTAAATTCTTTAACTTCTCGAGCTAGATTTCTGACCAGTTCTACATTGTAC
196 CTATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATCGGTTCTTCACTGTAC
* * * **
33926881 GTCATGTCAGGTTGAATTTCAACATCAACTGGTGATATTACGTGTGAAGGATCTGATCAATATTG
261 GTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGATACCG
* * * * * *
33926946 TCATAACATTGATACGTGGAATACAATATGAATCTTTTCTAACTCCGACGTCAAAGCTAACTGAT
326 TCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGAT
* ** * * *
33927011 AAGCTACTAGCCCAATTATCTCAATGATCTCAAACAACCCGATAAACGATG-GACTAAGCTTTCT
391 AAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCA-GAGACTAAGCTTTCC
* * **
33927075 TTTTCGGCCAAATCGAAGAACTTTCTTCCAAGGTAATACGTTCAGAAATACTGTGTCACCGACTT
455 TTTTCGGCCAAATC-AAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCGACTT
* * *
33927140 GAAATTCAATATCTTTTGTTTTCAAATCTGCGTAAGATTCCTGTT-GGTCCAAAGCTGCTTTCAA
519 GAAATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCT-TTCGATCCAAAGCTGCTTTCAA
* * *
33927204 GCTATCACGTATCACTTTGAACTTTTCTTCGGTTTCTCAAATCAAATCACCACCGAATAACCTTT
583 GCTATCACGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATCAAATCAACACCGAATAACTTTT
* ** * * * * *
33927269 TGTCGTTCAACTTTGTCCCGTATAATGGAATTCGACACTTTTGACCATACAAAGCT
648 TCTCACTCAGCTCTGTCCAGTATAATCGAATTCGACACTTTCGACCATACAAAGCT
* * * * ** * *
33927325 TCGTCAGATTTGTGGTCCCGAAACCACT-GTTCTGACTTTATTGAAAACCGACTGTTACAACTCT
1 TCGTCAGATTTGTGGTCCCGAAACCACTATTTC-AACTTCACTGAAAATGGGCTGTTACAACTTT
* * * * *
33927389 CCCCCTAAAGGAATTTTTGTTCCTAAAAATCTTACCAGAAAATAAATTCAAGTATTCCACTTTCA
65 CCCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCA
* * * **
33927454 TCGCTTCTTCTGGTTCCCAGGCAGCCTCTTGTATTCTGTGTCGTTGCCATCGAACTTTAACTAAA
130 TAGCTTCTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAA
*
33927519 GTTATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATCGGTTCTTCACTGTA
195 GCTATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATCGGTTCTTCACTGTA
* * * * * *
33927584 AGTCATATTAGGTTGAATTTCAACATCAACTGGGGATATTATGTGTGAAGGATCTGATTGGTATC
260 CGTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGATACC
* * * * *
33927649 GTCGTAACATCGATACGTGAAATACATTATGAATCTTTTCTAACTCTAATGGAAAACCTAACCGA
325 GTCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGA
*
33927714 TAAGCTACTAGCCCAATTCTCTCAATGATCTCAAATGGCCCAATAAACCACGGACGGACTAAGCT
390 TAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCA--GA--GACTAAGCT
* * * * * *
33927779 TTCCTTTTCAGCCAAATCAAAGAACTTTCTTCCAAGGAAATACTTTCACAAATATTGTGTTACTG
451 TTCCTTTTCGGCCAAATC-AAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCG
** * *
33927844 ACAAGAAATTCAATATCTTTTCTTTTCAAATAC-GCGGAAGATTTCTGTCGATCCAAAGCTGCTT
515 ACTTGAAATTCAATATCTTTTCTTTTCAAAT-CTGCGTAAGATTTCTTTCGATCCAAAGCTGCTT
* * * * **
33927908 TCAAGCTATCACGTATTACTTTGACATTTTCTTCGGTTTCTTAAATCAAATCAATATTGAATAAC
579 TCAAGCTATCACGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATCAAATCAACACCGAATAAC
* * * * * *
33927973 TTTTTCTCACTTAGCTCTATCCATTATAATGGAATTCGACACTTTTGACCATACCAAGCT
644 TTTTTCTCACTCAGCTCTGTCCAGTATAATCGAATTCGACACTTTCGACCATACAAAGCT
* * * * * * ** * *
33928033 TCATCAGATTTGTGGTCTCAAAACCACTGTTCCGACTTCACTGAAAATCAGTTGTTACAACTCTC
1 TCGTCAGATTTGTGGTCCCGAAACCACTATTTCAACTTCACTGAAAATGGGCTGTTACAACTTTC
* ** * * * * *
33928098 CCCCTAAAGGAATTTTCATCCCTGAAAATCGTACTAGAAAATAAATTCAAGTATTGGACTTTTAT
66 CCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCAT
* * *
33928163 AGCTTCTTCTGGTTCCTAGGAAGCCTCTTGTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAG
131 AGCTTCTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAG
33928228 CTATACTTTTATTTCTCAATTCTTTAACTT-TCCGAGCTAGAATTCTGATCGGTTCTTCACTGTA
196 CTATACTTTTATTTCTCAATTCTTTAACTTCT-CGAGCTAGAATTCTGATCGGTTCTTCACTGTA
* * * *
33928292 CGTCATATCTGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTAATTGGTACC
260 CGTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGATACC
* *
33928357 GT-GTAACATCGATATGTGGAATACATTATGAATCTTTTCTAAATCTGACGGCAAAGCTAACCGA
325 GTCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGA
* * * *
33928421 TAAGCTACTGGCCCAATTTTCACAATGATCTCAAACGGCCTAATAAACCAGAGACTAAGCTTTCC
390 TAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCAGAGACTAAGCTTTCC
* **
33928486 TTTTCCGCCAAATCGAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGTTGACTT
455 TTTTCGGCCAAATC-AAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCGACTT
* * *
33928551 GAAATTCAATATCTTTTCTTTTCAAATCTGCATAATATTTCTTTTGATCCAAAGCTGCATTT-AA
519 GAAATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTTTCGATCCAAAGCTGC-TTTCAA
* * * * * * *
33928615 GCTCTCACGTATCACTTTGACCATTTATTAGGTTTCTTACATCAAATCAACACTGAATAACTTTT
583 GCTATCACGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATCAAATCAACACCGAATAACTTTT
*
33928680 TCTCACTCAGCTCTGTCCAGTATAATCGAATTCGACACTTTCGACCATACAAATCT
648 TCTCACTCAGCTCTGTCCAGTATAATCGAATTCGACACTTTCGACCATACAAAGCT
* ** * * * * *
33928736 TCGTC-GAATATGTGGTCTTGAAACCACTATTTCAATTTCTCTTAAAATGGGTTGTTAAAACTTT
1 TCGTCAG-ATTTGTGGTCCCGAAACCACTATTTCAACTTCACTGAAAATGGGCTGTTACAACTTT
* ** * *
33928800 TCCCCTAAAATAATTTTCGTCCCCAAAAATCTTACTAGAAAATAAGTTCAAGTATTGCAGTTTCA
65 CCCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCA
* * *
33928865 TAG-TTACTTCTGGGTCCCAGGCAGCCTCTTCTATTCCATGT-GATTGCCAGAGAACTTTAACTA
130 TAGCTT-CTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCG-TTGCCAAAGAACTTTAACTA
* * * * * *
33928928 AAGCTATATTTTTATTCCTTAATTCTTTAACTTC-CTGAGCTAAAATTCTGACCAGTTCTTCACT
193 AAGCTATACTTTTATTTCTCAATTCTTTAACTTCTC-GAGCTAGAATTCTGATCGGTTCTTCACT
* * * * * * *
33928992 TTACGTTATATTAGGATAAATTTCAACATCAACTAGGGATATTACGTGTGAAGGATCTGATCGGT
257 GTACGTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGAT
* * *
33929057 ACCATCGTAACATCGATACGTGAAATACATTATGAATCTTTTCTAACTCTAACGGCAAAGCTAAC
322 ACCGTCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAAC
* ** * * * * *
33929122 TGATAAGCTGTTGGCCCAATTCCCTCAATGATCTCAAACGGCCTAATAAACCATAGACTCAGCTT
387 CGATAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCAGAGACTAAGCTT
* * * * * * *
33929187 TCCTTTTTGGCCAAATCACATAACTTTCTTCCAAGGCAATACTTTTAGATATATTATGTCGCCGA
452 TCCTTTTCGGCCAAATCA-AGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCGA
* * * * *
33929252 CTTGAAATTCAATATCTTTTATTTTCAAATCTGTGTAATATTT-TTGTCGATCCAAAGTTTCTTT
516 CTTGAAATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTT-TCGATCCAAAGCTGCTTT
* * * ***** *
33929316 CAAGCAATCACGTATCACTTTGACCTTTTCTTTGGTTTCTCAAATAAAATCATTTTTGTTGATCC
580 CAAGCTATCACGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATCAAATCAACACCG--AAT--
* * * * * * * * *** ***** * *
33929381 AAACCTGGTTTC-AAGCT-ATCAC-GTATCATTTTGA-CCTTTTCTTTGGTTTC-TCGAGT-CAA
641 -AA-CT-TTTTCTCA-CTCAGCTCTGT-CCAGTATAATCGAATTCGACACTTTCGACCA-TACAA
* *
33929440 ATCA
700 AGCT
* ** * ** * ** * * * * * * * * **
33929444 ACACCAAATAACTT-TTTTCTCG-CTCAACTCTGTCCAGTATAACAG-AATTCGACACT-TTCGA
1 TCGTCAGAT---TTGTGGTCCCGAAACCACTATTTCAACT-TCACTGAAAAT-G-GGCTGTT--A
*** ** * * * **
33929505 CCATACAAAGCTTCCT-CA--AATTTGTGGTCCCGAAACCAGCATTCCGACTTCACTGAAAACGG
58 -CA-AC-TTTCCCCCTAAAGGAATTT-TCGTCCCCAAA--A--A-TCTTAC--CA--GAAAA---
* * * * * * * * * ***
33929567 GT-TGTTACAACT-CTCCTCCTACA-AGAATT-TT-T-G-TCCC-TG-AAAATCTTACAAGAAAA
107 -TAAGTT-CAAGTATTGCACTTTCATAG-CTTCTTCTGGTTCCCAGGCAGCCTCTT-C-------
* * * * * * ** *** ** *
33929623 AAAGTTCAAGTTTGCACTT-TCATAGCTTCTTCCGGCTACAAGGC-AGCCTCTTCTACTCCTTGT
161 -TA-TTC-CGTGT-C-GTTGCCAAAG-AACTT-TAACTA-AA-GCTATACT-TT-TA-T--TTCT
** *** ** * * *
33929686 CGTTTCCAGAGAACTTTAACTAAAGCTATACTTTTATTTCTTAATTC-TTTAGCTTCATGAGCTA
212 CAATT-C-TTTAAC-TT--CTCGAGCTAGA-----A-TTC-TGA-TCGGTT--CTTC---A-CT-
* * * * * * *
33929750 GAATTTTAATCAGTTC-T-TCACTGTACGTCATATCAAGTAGAATGTCAACATCAACTGGG-GAT
257 G-----T-A-C-G-TCATATCA-GGT-TG-AATTTC-A--A-CA--TCAAC-T----GGGGATAT
***** * *
33929812 ATTACATGTGAAGGATCTGATCGATACCGTCGTAATATCAATACGTGGAATACATTATGAATCTT
299 -TACGTG-TGAAGGATCTGATCGATACCGTCGTAACATCGATACGTGGAATACATTATGAATCTT
* * * *
33929877 TTCTAACTCTGATGACAAAGCTAACAGATAAGCTACTAGCCCAATTCTCTAAATGATCTCAAACG
362 TTCTAACTCTGACGGCAAAGCTAACCGATAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACG
* * * *
33929942 GCCCGATAAACCATAGACTAAGCTTTCCTTTTCGGCCAAATCAACGAACTTTTTTCCAAGGAAAT
427 GCCCAATAAACCAGAGACTAAGCTTTCCTTTTCGGCCAAATCAA-GAACTTTCTTCCAAGGCAAT
* * * ** *
33930007 ACATTCAGAAATACTGTGTCGCCAACTCAAAATTCAATATCTTCTCTTTTCAAATCTGCGTAAGA
491 ACTTTCAGAAATACTGTGTTGCCGACTTGAAATTCAATATCTTTTCTTTTCAAATCTGCGTAAGA
* * * *
33930072 TTT-TTGTTGATCCAAAGCTGCTTTCAAGCTATCAAGTATGACTTTGACCTTTTCTTCGGTTTGT
556 TTTCTT-TCGATCCAAAGCTGCTTTCAAGCTATCACGTATCACTTTGACCTTTTCTTCGGTTTCT
* * * * * **
33930136 CAAATAAAATCAACACCGAATAACATTTTCTCGCGCAGCTTTGTTTAGTATAA-CGGAATTCGAC
620 CAAATCAAATCAACACCGAATAACTTTTTCTCACTCAGCTCTGTCCAGTATAATC-GAATTCGAC
*
33930200 ACTTTCAACCATACAAAGCT
684 ACTTTCGACCATACAAAGCT
* * * * * *
33930220 TCGTCAGATTTGTGGTCCTGAAACCACTGTTCCGACTTCACTAAAAATGGGCTGTTACAACTCTC
1 TCGTCAGATTTGTGGTCCCGAAACCACTATTTCAACTTCACTGAAAATGGGCTGTTACAACTTTC
* * * * * *
33930285 TCCTTAAAGGAATTTTCAT-CCCAAAAATCTTCCCAAAAAATAAGTTCAAGTATTGTACTTTCAT
66 CCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCAT
* * ** * * * *
33930349 AGCTTATTCTGGTTCCTAGGCAGCCTAATCTATCCCGTGTCATTACCAGAGAACTTTAACTAAAG
131 AGCTTCTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAG
* *
33930414 -TATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTACAATTCTGATCGATTCTTCACTGTAC
196 CTATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATCGGTTCTTCACTGTAC
* * * * **
33930478 GTCATATCAGGTTGAATGTCAACATCAACTGGGGATATTACATGTGAAGGATCTAATTGATATTG
261 GTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGATACCG
* * * * * * *
33930543 TTGTAACATTGATACATAGAATACATTATGAATCTTTTCTACCTCTTACGACAAAGCTAACC-AT
326 TCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGA-
** * ** * * *
33930607 TAAGCTACTATTCCAATTCTCTCAATGACCTCAAATAGCCCGATAAACCACATACTAAGCTTTCC
390 TAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCAGAGACTAAGCTTTCC
*
33930672 ATTTT-GGCCAAATCGAAGAACTTTCTTCCAAGGCAATACTTTCTGAAATACTGTGTTGCCGACT
455 -TTTTCGGCCAAATC-AAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCGACT
* * * * *
33930736 TGAAATTCAATATCTTTTCTTTTCAAATCTGTGAAAGATTTCTATCGATCCAAGGTTGCTTTCAA
518 TGAAATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTTTCGATCCAAAGCTGCTTTCAA
*
33930801 GCTATCACGTATCACTTTG-CACTTTTCTTCGGTTTCTCAAATCAAATCAACACCAAATAACTTT
583 GCTATCACGTATCACTTTGAC-CTTTTCTTCGGTTTCTCAAATCAAATCAACACCGAATAACTTT
* * * * * * *
33930865 TTCTCGCTCAGCTCTTTCTAGTCTAA-CAGAATTCGACA-TTGTTGATGC-TACAAAGAT
647 TTCTCACTCAGCTCTGTCCAGTATAATC-GAATTCGACACTT-TCGA-CCATACAAAGCT
* * * * * * * *
33930922 TCGTCAGATATGTGTTCCTGAAACAACTATTCCGACTTCACTGAAAACGGGCTGTTACAACTCTC
1 TCGTCAGATTTGTGGTCCCGAAACCACTATTTCAACTTCACTGAAAATGGGCTGTTACAACTTTC
* * * * * * *
33930987 CTCCTAAAAGAATTTTCGTTCCCGACAATCTTACTAGAAAATAAGTTCAAGTATTGCACTTTTAT
66 CCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCAT
* ** * * * ** * *
33931052 AGCTTATTCCAGTTTCCAGGTAGCCTTTTCTATTATGTGTCATTGCCAAAGAACTATAAACTAAA
131 AGCTTCTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACT-TTAACTAAA
* * * * * *
33931117 GCTATACTTTTATTTCTCAATGCCTTAACTTCCCGAGCTAGACTTTTGATCGGTTCTTCAGTGTA
195 GCTATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATCGGTTCTTCACTGTA
* * * * * * *
33931182 CGTCATTTTAGGTTGAATTTCAACACCAATTGGGGATATTACGTGTGAAGGTTCTAATCAATACC
260 CGTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGATACC
* * * * * * *
33931247 GTCGTAACATCGATGCGTAGAATACATTATGAATCTTTCCTAACTCTAACGGAAAACCTAACTGA
325 GTCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGA
* * * *
33931312 TAAGCTACTGGCTCAATTCTCTCAATGATCTCGAATGGCCCAATAAACCACGGATGGACTAAGCT
390 TAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCA--GA--GACTAAGCT
* * * * * * * *
33931377 TTCCTTTTCGACCAAATCAAAGAACTTTCTTCCATGGAAATAATTTGAAAAATATTGTGTTGCTG
451 TTCCTTTTCGGCCAAATC-AAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCG
** * * * * * * * *
33931442 ACTCAAAATTCAGTATCTTTTCTTCTCAAATTTGTGAAAGATTTCTATCGATCCAAAGCAGTTTT
515 ACTTGAAATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTTTCGATCCAAAGCTGCTTT
* ** * **
33931507 CAAGCTATCACGTATCACTTTGACATTTTCTTCAATTTCTCAAATCAAATCAATACTTAATAACT
580 CAAGCTATCACGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATCAAATCAACACCGAATAACT
* * * * ** ** *
33931572 TTTTCTCACTCAACTCTATCTAGTATAATGGAATTTAACACTTTTTACCATAAAAAGCT
645 TTTTCTCACTCAGCTCTGTCCAGTATAATCGAATTCGACACTTTCGACCATACAAAGCT
* * * * ** * *
33931631 TCATCAGATTTGTAGTCCCGAAACCATTGTTTTGACTTCACTGAAAACGGGTTGTTACAACTTTC
1 TCGTCAGATTTGTGGTCCCGAAACCACTATTTCAACTTCACTGAAAATGGGCTGTTACAACTTTC
* * * *
33931696 CCCCTAAAGTAATTTTTGTCCCTAAAAATC-TACCAGAAAATAAGTTCAAGTATTACACTTTCAT
66 CCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCAT
* *** * * * *
33931760 AGCTTCTTCTAGTTCCCAAATAGCCTCTTCTATTCTGTGTCATTACCAAAAAACTTTAACTAAAG
131 AGCTTCTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAG
* * * * * *
33931825 TTATACTTTTATTTCTCAATTTTTTAACTACCCGAGCTAGAATTTTGATCGGTTTTTCACTGTAC
196 CTATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATCGGTTCTTCACTGTAC
* ** *
33931890 GTCATATCAAGTTGAATTTCAACATCAACAAGGGATATTACTTGTGAAGGATCTGATCGATACCG
261 GTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGATACCG
* * * * * *
33931955 TTGTAACATTGATACGTAGAATACATTATGAATCTTTTCTAACTCTGATGACAAAGCTAACCGTT
326 TCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGAT
* *
33932020 AAGCTACTAGCCCAATTCACTTAATGATCTCAAACGGCCCAATAAACCAGAGACTAAGCTTTCCT
391 AAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCAGAGACTAAGCTTTCCT
* ** * * *
33932085 TTTCAGCCAAATCAATGAACTTTCTTTGAAGGCAATAATTTTAGAAATTCTGTGTTGCCGACTTG
456 TTTCGGCCAAATCAA-GAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCGACTTG
**
33932150 AAATTCAATATCTTTTCTTTTCAAATCTATGTAAGATTT-TTGTCGATCCAAAGCTGCTTTCAAG
520 AAATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTT-TCGATCCAAAGCTGCTTTCAAG
* *
33932214 CTATCACGTATCACTTTGACCTTTTGTTTGGTTTCTCAAATCAAATCAACACCGAATAACTTTTT
584 CTATCACGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATCAAATCAACACCGAATAACTTTTT
* * * * *
33932279 CTCGCTCA-CATCTGTCCAGTAAAATGGAATTCGACACTTTCAACCATACAAAGAT
649 CTCACTCAGC-TCTGTCCAGTATAATCGAATTCGACACTTTCGACCATACAAAGCT
* * * * * * *
33932334 TTGTTAGATTTGTGGACTCGAAGCCACTA-TTCTAACTTCATTGAAAATGGGCTGTTACAACTCT
1 TCGTCAGATTTGTGGTCCCGAAACCACTATTTC-AACTTCACTGAAAATGGGCTGTTACAACTTT
* * *
33932398 CCCCCTAAAGGAATTTTCGTCACTAAAAATCTTACCAGAAGATAAGTTCAAGTATTGCACTTTCA
65 CCCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCA
*
33932463 TAGCTTCTTCTAGTTCCCA
130 TAGCTTCTTCTGGTTCCCA
33932482 AGAAACCTCT
Statistics
Matches: 4155, Mismatches: 820, Indels: 364
0.78 0.15 0.07
Matches are distributed among these distances:
701 4 0.00
702 413 0.10
703 888 0.21
704 701 0.17
705 208 0.05
706 3 0.00
707 321 0.08
708 611 0.15
709 316 0.08
710 25 0.01
711 9 0.00
712 6 0.00
713 11 0.00
714 7 0.00
715 7 0.00
716 4 0.00
717 5 0.00
718 5 0.00
719 6 0.00
720 3 0.00
721 4 0.00
722 6 0.00
723 1 0.00
724 5 0.00
725 10 0.00
726 8 0.00
728 1 0.00
729 7 0.00
730 4 0.00
731 8 0.00
732 8 0.00
733 4 0.00
734 4 0.00
735 4 0.00
736 2 0.00
737 1 0.00
738 8 0.00
739 4 0.00
740 3 0.00
741 6 0.00
742 3 0.00
743 6 0.00
744 7 0.00
745 1 0.00
746 2 0.00
747 2 0.00
748 4 0.00
749 3 0.00
750 6 0.00
751 9 0.00
752 6 0.00
753 7 0.00
754 2 0.00
755 1 0.00
756 1 0.00
757 7 0.00
758 10 0.00
759 4 0.00
760 1 0.00
761 5 0.00
762 3 0.00
763 5 0.00
764 4 0.00
765 6 0.00
766 4 0.00
767 1 0.00
768 5 0.00
769 5 0.00
770 8 0.00
771 5 0.00
772 7 0.00
773 9 0.00
774 24 0.01
775 24 0.01
776 12 0.00
778 4 0.00
779 5 0.00
780 286 0.07
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (703 bp):
TCGTCAGATTTGTGGTCCCGAAACCACTATTTCAACTTCACTGAAAATGGGCTGTTACAACTTTC
CCCCTAAAGGAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCAT
AGCTTCTTCTGGTTCCCAGGCAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAG
CTATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATCGGTTCTTCACTGTAC
GTCATATCAGGTTGAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCGATACCG
TCGTAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGAT
AAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCCCAATAAACCAGAGACTAAGCTTTCCT
TTTCGGCCAAATCAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTTGCCGACTTGA
AATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTTTCGATCCAAAGCTGCTTTCAAGCT
ATCACGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATCAAATCAACACCGAATAACTTTTTCT
CACTCAGCTCTGTCCAGTATAATCGAATTCGACACTTTCGACCATACAAAGCT
Found at i:33930098 original size:780 final size:780
Alignment explanation
Indices: 33928594--33930147 Score: 2068
Period size: 780 Copynumber: 2.0 Consensus size: 780
33928584 AATATTTCTT
* *
33928594 TTGATCCAAAGCTGCATTTAAGCTCTCACGTATCACTTTGACCATTTATTAGGTTTCTTACATCA
1 TTGATCCAAACCTGCATTTAAGCTATCACGTATCACTTTGACCATTTATTAGGTTTCTTACATCA
** *
33928659 AATCAACACTGAATAACTTTTTCTCACTCAGCTCTGTCCAGTATAATCGAATTCGACACTTTCGA
66 AATCAACACCAAATAACTTTTTCTCACTCAACTCTGTCCAGTATAATCGAATTCGACACTTTCGA
* * * ** * * * * *
33928724 CCATACAAATCTTCGTCGAATATGTGGTCTTGAAACCACTATTTCAATTTCTCTTAAAATGGGTT
131 CCATACAAAGCTTCCTCAAATATGTGGTCCCGAAACCACTATTCCAACTTCACTGAAAACGGGTT
* * * *
33928789 GTTAAAACTTTTCCCCTAAAATAATTTTCGTCCCCAAAAATCTTACTAGAAAATAAGTTCAAGTA
196 GTTAAAACTTCTCCCCTAAAAGAATTTTCGTCCCCAAAAATCTTACAAGAAAAAAAGTTCAAGTA
* * * * * *
33928854 TTGCAGTTTCATAGTTACTTCTGGGTCCCAGGCAGCCTCTTCTATTCCATGTGATTGCCAGAGAA
261 TTGCACTTTCATAGTTACTTCCGGCTACAAGGCAGCCTCTTCTACTCCATGTGATTGCCAGAGAA
* * *
33928919 CTTTAACTAAAGCTATATTTTTATTCCTTAATTCTTTAACTTCCTGAGCTAAAATTCTGACCAGT
326 CTTTAACTAAAGCTATACTTTTATTCCTTAATTCTTTAACTTCATGAGCTAAAATTCTAACCAGT
* * * * * *
33928984 TCTTCACTTTACGTTATATTAGGATAAATTTCAACATCAACTAGGGATATTACGTGTGAAGGATC
391 TCTTCACTGTACGTCATATCAAGATAAATGTCAACATCAACTAGGGATATTACATGTGAAGGATC
* * *
33929049 TGATCGGTACCATCGTAACATCGATACGTGAAATACATTATGAATCTTTTCTAACTCTAACGGCA
456 TGATCGATACCATCGTAACATCAATACGTGAAATACATTATGAATCTTTTCTAACTCTAACGACA
* ** * * *
33929114 AAGCTAACTGATAAGCTGTTGGCCCAATTCCCTCAATGATCTCAAACGGCCTAATAAACCATAGA
521 AAGCTAACAGATAAGCTACTAGCCCAATTCCCTAAATGATCTCAAACGGCCCAATAAACCATAGA
* * * * * * * *
33929179 CTCAGCTTTCCTTTTTGGCCAAATCACATAACTTTCTTCCAAGGCAATACTTTTAGATATATTAT
586 CTAAGCTTTCCTTTTCGGCCAAATCACAGAACTTTCTTCCAAGGAAATACATTCAGAAATACTAT
* ** * * *
33929244 GTCGCCGACTTGAAATTCAATATCTTTTATTTTCAAATCTGTGTAATATTTTTGTCGATCCAAAG
651 GTCGCCAACTCAAAATTCAATATCTTCTATTTTCAAATCTGCGTAAGATTTTTGTCGATCCAAAG
* * * *
33929309 TTTCTTTCAAGCAATCACGTATCACTTTGACCTTTTCTTTGGTTTCTCAAATAAAATCATTTTTG
716 CTGCTTTCAAGCAATCAAGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATAAAATCATTTTTG
* * * * *
33929374 TTGATCCAAACCTG-GTTTCAAGCTATCACGTATCATTTTGACCTTTTCTTTGGTTTC-T-CGAG
1 TTGATCCAAACCTGCATTT-AAGCTATCACGTATCACTTTGACCATTTATTAGGTTTCTTAC-A-
*
33929436 TCAAATCAACACCAAATAACTTTTTTCTCGCTCAACTCTGTCCAGTATAA-CAGAATTCGACACT
63 TCAAATCAACACCAAATAAC-TTTTTCTCACTCAACTCTGTCCAGTATAATC-GAATTCGACACT
* *
33929500 TTCGACCATACAAAGCTTCCTCAAATTTGTGGTCCCGAAACCAGC-ATTCCGACTTCACTGAAAA
126 TTCGACCATACAAAGCTTCCTCAAATATGTGGTCCCGAAACCA-CTATTCCAACTTCACTGAAAA
* * * **
33929564 CGGGTTGTTACAAC-TCTCCTCCTACAAGAATTTTTGTCCCTGAAAATCTTACAAGAAAAAAAGT
190 CGGGTTGTTAAAACTTCTCC-CCTAAAAGAATTTTCGTCCCCAAAAATCTTACAAGAAAAAAAGT
*
33929628 TCAAGT-TTGCACTTTCATAGCTT-CTTCCGGCTACAAGGCAGCCTCTTCTACTCCTTGTCG-TT
254 TCAAGTATTGCACTTTCATAG-TTACTTCCGGCTACAAGGCAGCCTCTTCTACTCCATGT-GATT
* * * *
33929690 TCCAGAGAACTTTAACTAAAGCTATACTTTTATTTCTTAATTCTTTAGCTTCATGAGCTAGAATT
317 GCCAGAGAACTTTAACTAAAGCTATACTTTTATTCCTTAATTCTTTAACTTCATGAGCTAAAATT
* * *
33929755 TTAATCAGTTCTTCACTGTACGTCATATCAAG-TAGAATGTCAACATCAACTGGGGATATTACAT
382 CTAACCAGTTCTTCACTGTACGTCATATCAAGATA-AATGTCAACATCAACTAGGGATATTACAT
* * *
33929819 GTGAAGGATCTGATCGATACCGTCGTAATATCAATACGTGGAATACATTATGAATCTTTTCTAAC
446 GTGAAGGATCTGATCGATACCATCGTAACATCAATACGTGAAATACATTATGAATCTTTTCTAAC
* * * *
33929884 TCTGATGACAAAGCTAACAGATAAGCTACTAGCCCAATTCTCTAAATGATCTCAAACGGCCCGAT
511 TCTAACGACAAAGCTAACAGATAAGCTACTAGCCCAATTCCCTAAATGATCTCAAACGGCCCAAT
*
33929949 AAACCATAGACTAAGCTTTCCTTTTCGGCCAAATCA-ACGAACTTTTTTCCAAGGAAATACATTC
576 AAACCATAGACTAAGCTTTCCTTTTCGGCCAAATCACA-GAACTTTCTTCCAAGGAAATACATTC
* *
33930013 AGAAATACTGTGTCGCCAACTCAAAATTCAATATCTTCTCTTTTCAAATCTGCGTAAGATTTTTG
640 AGAAATACTATGTCGCCAACTCAAAATTCAATATCTTCTATTTTCAAATCTGCGTAAGATTTTTG
* * * *
33930078 TTGATCCAAAGCTGCTTTCAAGCTATCAAGTATGACTTTGACCTTTTCTTCGGTTTGTCAAATAA
705 TCGATCCAAAGCTGCTTTCAAGCAATCAAGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATAA
33930143 AATCA
770 AATCA
33930148 ACACCGAATA
Statistics
Matches: 667, Mismatches: 96, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
778 1 0.00
779 8 0.01
780 509 0.76
781 148 0.22
782 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (780 bp):
TTGATCCAAACCTGCATTTAAGCTATCACGTATCACTTTGACCATTTATTAGGTTTCTTACATCA
AATCAACACCAAATAACTTTTTCTCACTCAACTCTGTCCAGTATAATCGAATTCGACACTTTCGA
CCATACAAAGCTTCCTCAAATATGTGGTCCCGAAACCACTATTCCAACTTCACTGAAAACGGGTT
GTTAAAACTTCTCCCCTAAAAGAATTTTCGTCCCCAAAAATCTTACAAGAAAAAAAGTTCAAGTA
TTGCACTTTCATAGTTACTTCCGGCTACAAGGCAGCCTCTTCTACTCCATGTGATTGCCAGAGAA
CTTTAACTAAAGCTATACTTTTATTCCTTAATTCTTTAACTTCATGAGCTAAAATTCTAACCAGT
TCTTCACTGTACGTCATATCAAGATAAATGTCAACATCAACTAGGGATATTACATGTGAAGGATC
TGATCGATACCATCGTAACATCAATACGTGAAATACATTATGAATCTTTTCTAACTCTAACGACA
AAGCTAACAGATAAGCTACTAGCCCAATTCCCTAAATGATCTCAAACGGCCCAATAAACCATAGA
CTAAGCTTTCCTTTTCGGCCAAATCACAGAACTTTCTTCCAAGGAAATACATTCAGAAATACTAT
GTCGCCAACTCAAAATTCAATATCTTCTATTTTCAAATCTGCGTAAGATTTTTGTCGATCCAAAG
CTGCTTTCAAGCAATCAAGTATCACTTTGACCTTTTCTTCGGTTTCTCAAATAAAATCATTTTTG
Found at i:33934661 original size:699 final size:700
Alignment explanation
Indices: 33932497--33935318 Score: 3508
Period size: 699 Copynumber: 4.0 Consensus size: 700
33932487 CCTCTTCTCT
* * * *
33932497 TTTTAATTT-TCAATTTTTTAACTTCCCGAGCTAGAATTCTGATCGGTTCTTCACAGTACATCAT
1 TTTT-ATTTCTCAATTCTTTAACTTCCCGAGCAAGAATTCTGATCGGTTCTTCACTGTACGTCAT
* * * * * *
33932561 ATCAGGTTGAATTT-AAGCATAAACTAGGGATATTATGA-GTGAAGAATCTGATCGATACCGTCG
65 ATCAGGTTGAATTTCAA-CATCAACTGGGGATATTA-CATCTGAAGGATCTGATCGATACCATCG
* * *
33932624 CAACATCGAGACGTGGAATACATTATGAATCTTTTCTAACTCTAAT-GACAAAGCTAACTGATAA
128 TAACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGATAG-CAAAGCTAACTGATAA
* * * * * * ** ***
33932688 TCTACTGGCCC-ATTCTTTCAATAATCTCAAAAGGCCTGATAAACCA-AGGGCTAAGCTTTCCTT
192 GCTACTGACCCAATTCTCTAAATAATCTCAAATGGCCCGATAAACCACA-AACTAAGCTTTTAGT
*** * ** * * * * *
33932751 TTTGGGTACATTGAAGAACTTTCTTCCAAGGTAATAATTTTAGAAACACTGTGTCGCCT-ACTTG
256 TTTGCCCAAATCAAATAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCG-CTGACTTG
* * * * *
33932815 GAATTTAATATATTTTCGTTTCAAATCTGCATAAGATTTCTATTGATCCAAAGCCAT--TTTCAA
320 AAATTCAATAT-TTTT--TTTCAAATCAGCATAAG-TTTTTGTTGATCCAAA-CC-TGGTTTCAA
* * * * *
33932878 GCTATCACGTATCACTTTGACATTTTCATCAGTTTCTCAAATCAAATCAACATCGAATAACTTTT
379 GCTATCACGTATCATTTTGACATTTTCTTCGGTTTCTCAAATCAAATCAACACCAAATAACTTTT
* * * * ** * * *
33932943 TCACACTCAGCACTATTGAGTATAACGGAATTCGAAACTTTTGACCATACAAAGCTTCGTCAAAT
444 TCTCGCTCAACTCTATCCAGTATAACAGAATTCGACACTTTCGACCATACAAAGCTTCGTCAAAT
* ** * * ** * * *
33933008 TTATGGTCCCGAAACCACTGTTTTGACTTCACTGAAAATGGGCTATTACAACTCTCCCCCTAAAG
509 TTAAGGTATCGAAACCACTGTTCTGATTTCACTGAAAATAAGTTGTTACAACTCTCACCCTAAAG
* ** * * * ** *
33933073 GAATTTTCATCCCTGAAAATCTTACCATAAAATAAGTTCAAGTATTGCACTTTCATATTTTATTC
574 GAAATTTCATCCCCAAAAACCTTACCAGAAAATAACTTCAAGTATTGCACTTTCATAGCTTCTTC
* * * * * ** * * * *
33933138 TGGTTCCCAGGAAGTCTATTCTATTCTGTGTCGTTACTAGAGAACTTTAACTAAAGTTATAC
639 CGATTCCCAGGTAGCCTCTTCTATTCCATGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
* * * *
33933200 TTTTATTTCTCAATTCATTAACTACCCGAGCTAGAATTTTGATCGGTTCTTCACTGTACGTCATA
1 TTTTATTTCTCAATTCTTTAACTTCCCGAGCAAGAATTCTGATCGGTTCTTCACTGTACGTCATA
* * * * * * *
33933265 TCAAGTTAAATTTCAACATCAACTGGGGATATTACGTGTGAAGGATCTGATCAACACCATTGTAA
66 TCAGGTTGAATTTCAACATCAACTGGGGATATTACATCTGAAGGATCTGATCGATACCATCGTAA
* * *
33933330 CATCGATACGTGGAATACATTATGAATATTTTCTAACTCCGATGGCAAAGCTAACTGATAAGCTA
131 CATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGATAGCAAAGCTAACTGATAAGCTA
* * * ** *
33933395 CTGACCCAATTCTCTCAATAATCTCAAATGGCTCGATAAACCTCGGATTAAGCTTTT--TTTTCG
196 CTGACCCAATTCTCTAAATAATCTCAAATGGCCCGATAAACCACAAACTAAGCTTTTAGTTTT-G
* * * * *
33933458 GCCAAATC-AATGTACTTTCTTCCAAGGCAATACTTTCAGAAATATTGTGTCACCGACTTGAAAT
260 CCCAAATCAAAT-AACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAAAT
** * * * *** *
33933522 TCAATATCTTTTCTTTTCAAATTTGCATAAAATTTATGTCGATCCATTGCTGCTTTCAAGCTATC
324 TCAATA--TTTT-TTTTCAAATCAGCAT-AAGTTTTTGTTGATCCAAACCTGGTTTCAAGCTATC
* * * ** *
33933587 ACGTTTCATTTTGACATTTTCTTCGATTTCTCAAATCAAATCAATACTGAATAACTTTTTCTTGC
385 ACGTATCATTTTGACATTTTCTTCGGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCTCGC
* * ** * * *** **
33933652 TCAGCTCTATCTAGTATAATGGAATTCTACACTTTTGACCATACAAAGCTTCGTTGGATTTGTGG
450 TCAACTCTATCCAGTATAACAGAATTCGACACTTTCGACCATACAAAGCTTCGTCAAATTTAAGG
* * * * * *** ** * *
33933717 TCTCAAAACCATTATTTTGATTTCACTGAAAAGGGGTTGTTACAAAACTCCCCCTAAA-GAATTT
515 TATCGAAACCACTGTTCTGATTTCACTGAAAATAAGTTGTTACAACTCTCACCCTAAAGGAAATT
* ** * ** * * *
33933781 TCGTCCTAAAAAATCTTACCAGAAAATATGTTCAAGTATTGCACTTTCATAGCTTCTTTCGGTTT
580 TCATCCCCAAAAACCTTACCAGAAAATAACTTCAAGTATTGCACTTTCATAGCTTCTTCCGATTC
* * *
33933846 CCACGCAGCCTCTTCTATTCCTTGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
645 CCAGGTAGCCTCTTCTATTCCATGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
* * *
33933902 TTTTATTTCTCAATTCTTTAACTTCTCGTGCAAGAATTCTGATCGGTT-TGTCACTGTATGTCAT
1 TTTTATTTCTCAATTCTTTAACTTCCCGAGCAAGAATTCTGATCGGTTCT-TCACTGTACGTCAT
* *
33933966 ATCAGGTTGAATTTCCACATCAATTGGGGATATTACATCTGAAGGATCTGATCGATACCATCGTA
65 ATCAGGTTGAATTTCAACATCAACTGGGGATATTACATCTGAAGGATCTGATCGATACCATCGTA
* **
33934031 ACATCGATACGTGGAATACATTATTAATCTTTTCTAACTCTGATAGTGAAGCTAA-TGATAAGCT
130 ACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGATAGCAAAGCTAACTGATAAGCT
* *
33934095 ACTGACCCAATTCTCTAAATGATCTTAAATGGCCCGATAAACCACAAACTAAGCTTTTAGTTTTG
195 ACTGACCCAATTCTCTAAATAATCTCAAATGGCCCGATAAACCACAAACTAAGCTTTTAGTTTTG
33934160 CCCAAATCAAATAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAAATT
260 CCCAAATCAAATAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAAATT
*
33934225 CAAT-TTTTTTTTCAAATCAGCGTAAGTTTTTGTTGATCCAAACCTGGTTTCAAGCTATCACGTA
325 CAATATTTTTTTTCAAATCAGCATAAGTTTTTGTTGATCCAAACCTGGTTTCAAGCTATCACGTA
* * * *
33934289 TCATTTTGACCTTTTCTTTGGTTTCTCGAGTCAAATCAACACCAAATAACTTTTTTCTCGCTCAA
390 TCATTTTGACATTTTCTTCGGTTTCTCAAATCAAATCAACACCAAATAAC-TTTTTCTCGCTCAA
* *
33934354 CTCTGTCCAGTATAACAGAATTCGACACTTTCGACCATACAAAGCTTTGTCAAATTTAAGGTATC
454 CTCTATCCAGTATAACAGAATTCGACACTTTCGACCATACAAAGCTTCGTCAAATTTAAGGTATC
* *
33934419 GAAACCACTGTCTCT-ATTTCATTGAAAATAAGTTGTTACAACTCTTACCCTAAAGGAAATTTCA
519 GAAACCACTGT-TCTGATTTCACTGAAAATAAGTTGTTACAACTCTCACCCTAAAGGAAATTTCA
33934483 TCCCCAAAAACCTTACCAGAAAATAACTTCAAGTATTGCACTTTCATAGCTTCTTCCGATTCCCA
583 TCCCCAAAAACCTTACCAGAAAATAACTTCAAGTATTGCACTTTCATAGCTTCTTCCGATTCCCA
33934548 GGTAGCCTCTTCTATTCCATGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
648 GGTAGCCTCTTCTATTCCATGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
* * *
33934601 TTTTATTTCTCAATTCTTTAACTTCTCGTGCAAGAATTCTGATCGGTT-TGTCACTGTATGTCAT
1 TTTTATTTCTCAATTCTTTAACTTCCCGAGCAAGAATTCTGATCGGTTCT-TCACTGTACGTCAT
* *
33934665 ATCAGGTTGAATTTCCACATCAATTGGGGATATTACATCTGAAGGATCTGATCGATACCATCGTA
65 ATCAGGTTGAATTTCAACATCAACTGGGGATATTACATCTGAAGGATCTGATCGATACCATCGTA
* **
33934730 ACATCGATACGTGGAATACATTATTAATCTTTTCTAACTCTGATAGTGAAGCTAA-TGATAAGCT
130 ACATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGATAGCAAAGCTAACTGATAAGCT
* *
33934794 ACTGACCCAATTCTCTAAATGATCTTAAATGGCCCGATAAACCACAAACTAAGCTTTTAGTTTTG
195 ACTGACCCAATTCTCTAAATAATCTCAAATGGCCCGATAAACCACAAACTAAGCTTTTAGTTTTG
33934859 CCCAAATCAAATAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAAATT
260 CCCAAATCAAATAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAAATT
*
33934924 CAAT-TTTTTTTTCAAATCAGCGTAAGTTTTTGTTGATCCAAACCTGGTTTCAAGCTATCACGTA
325 CAATATTTTTTTTCAAATCAGCATAAGTTTTTGTTGATCCAAACCTGGTTTCAAGCTATCACGTA
* * * *
33934988 TCATTTTGACCTTTTCTTTGGTTTCTCGAGTCAAATCAACACCAAATAACTTTTTTCTCGCTCAA
390 TCATTTTGACATTTTCTTCGGTTTCTCAAATCAAATCAACACCAAATAAC-TTTTTCTCGCTCAA
* *
33935053 CTCTGTCCAGTATAACAGAATTCGACACTTTCGACCATACAAAGCTTTGTCAAATTTAAGGTATC
454 CTCTATCCAGTATAACAGAATTCGACACTTTCGACCATACAAAGCTTCGTCAAATTTAAGGTATC
* *
33935118 GAAACCACTGTCTCT-ATTTCATTGAAAATAAGTTGTTACAACTCTTACCCTAAAGGAAATTTCA
519 GAAACCACTGT-TCTGATTTCACTGAAAATAAGTTGTTACAACTCTCACCCTAAAGGAAATTTCA
33935182 TCCCCAAAAACCTTACCAGAAAATAACTTCAAGTATTGCACTTTCATAGCTTCTTCCGATTCCCA
583 TCCCCAAAAACCTTACCAGAAAATAACTTCAAGTATTGCACTTTCATAGCTTCTTCCGATTCCCA
33935247 GGTAGCCTCTTCTATTCCATGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
648 GGTAGCCTCTTCTATTCCATGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
33935300 TTTTATTTCTCAATTCTTT
1 TTTTATTTCTCAATTCTTT
33935319 TATTCCGTGT
Statistics
Matches: 1894, Mismatches: 203, Indels: 48
0.88 0.09 0.02
Matches are distributed among these distances:
697 75 0.04
698 115 0.06
699 838 0.44
701 61 0.03
702 338 0.18
703 418 0.22
704 47 0.02
705 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.35
Consensus pattern (700 bp):
TTTTATTTCTCAATTCTTTAACTTCCCGAGCAAGAATTCTGATCGGTTCTTCACTGTACGTCATA
TCAGGTTGAATTTCAACATCAACTGGGGATATTACATCTGAAGGATCTGATCGATACCATCGTAA
CATCGATACGTGGAATACATTATGAATCTTTTCTAACTCTGATAGCAAAGCTAACTGATAAGCTA
CTGACCCAATTCTCTAAATAATCTCAAATGGCCCGATAAACCACAAACTAAGCTTTTAGTTTTGC
CCAAATCAAATAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAAATTC
AATATTTTTTTTCAAATCAGCATAAGTTTTTGTTGATCCAAACCTGGTTTCAAGCTATCACGTAT
CATTTTGACATTTTCTTCGGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCTCGCTCAACT
CTATCCAGTATAACAGAATTCGACACTTTCGACCATACAAAGCTTCGTCAAATTTAAGGTATCGA
AACCACTGTTCTGATTTCACTGAAAATAAGTTGTTACAACTCTCACCCTAAAGGAAATTTCATCC
CCAAAAACCTTACCAGAAAATAACTTCAAGTATTGCACTTTCATAGCTTCTTCCGATTCCCAGGT
AGCCTCTTCTATTCCATGTCATTGCCAGAGAACTTTAACTAAAGCTATAC
Found at i:33938429 original size:2 final size:2
Alignment explanation
Indices: 33938422--33938453 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
33938412 ATAAACATTC
33938422 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33938454 GTTTAGCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33939031 original size:14 final size:14
Alignment explanation
Indices: 33939012--33939052 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
33939002 CATTTCTTGG
33939012 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
*
33939026 TCGGTTCGGTTCAC
1 TCGGTTCAGTTCAC
33939040 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
33939053 ATTGGACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:33941612 original size:43 final size:43
Alignment explanation
Indices: 33941546--33941674 Score: 188
Period size: 43 Copynumber: 3.0 Consensus size: 43
33941536 TTTTTTTAGG
33941546 CCTTTAGCGACGCTTTCCCCAAAAACGCCGCTAAAGATCATGA
1 CCTTTAGCGACGCTTTCCCCAAAAACGCCGCTAAAGATCATGA
* * * *
33941589 CCTTTAGCGACGCTTTCCTCAAAAATGCCGCTAAAGAACAAGA
1 CCTTTAGCGACGCTTTCCCCAAAAACGCCGCTAAAGATCATGA
* *
33941632 CCTTTAGCGA-GACTTTCCCCAAAAACGCCGTTAAAGGTCATGA
1 CCTTTAGCGACG-CTTTCCCCAAAAACGCCGCTAAAGATCATGA
33941675 AAAATTTTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 74 0.99
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
CCTTTAGCGACGCTTTCCCCAAAAACGCCGCTAAAGATCATGA
Found at i:33946272 original size:8 final size:7
Alignment explanation
Indices: 33946254--33946366 Score: 72
Period size: 7 Copynumber: 16.1 Consensus size: 7
33946244 ACTAATTTAT
33946254 CTAAACC
1 CTAAACC
33946261 CTAAACCC
1 CTAAA-CC
33946269 CT-AACC
1 CTAAACC
*
33946275 CT--TCTC
1 CTAAAC-C
33946281 CTAAACC
1 CTAAACC
* *
33946288 TTAAATC
1 CTAAACC
* *
33946295 ATAAAAC
1 CTAAACC
*
33946302 ATAAACC
1 CTAAACC
33946309 CTAAACCC
1 CTAAA-CC
33946317 CT-AACC
1 CTAAACC
*
33946323 ATAAACC
1 CTAAACC
33946330 CTAAACCC
1 CTAAA-CC
*
33946338 CTAACCC
1 CTAAACC
*
33946345 CTAACCC
1 CTAAACC
33946352 CTAAACC
1 CTAAACC
*
33946359 TTAAACC
1 CTAAACC
33946366 C
1 C
33946367 CACCCCTTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
5 1 0.01
6 10 0.12
7 59 0.69
8 15 0.18
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:33946325 original size:21 final size:22
Alignment explanation
Indices: 33946301--33946358 Score: 91
Period size: 21 Copynumber: 2.7 Consensus size: 22
33946291 AATCATAAAA
33946301 CATAAACCCTAAACCCCTAA-C
1 CATAAACCCTAAACCCCTAACC
33946322 CATAAACCCTAAACCCCTAACC
1 CATAAACCCTAAACCCCTAACC
* *
33946344 CCTAACCCCTAAACC
1 CATAAACCCTAAACC
33946359 TTAAACCCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
21 20 0.59
22 14 0.41
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.14
Consensus pattern (22 bp):
CATAAACCCTAAACCCCTAACC
Found at i:33946325 original size:28 final size:28
Alignment explanation
Indices: 33946294--33946384 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
33946284 AACCTTAAAT
33946294 CATAAAACATAAA-CCCTAAACCCCTAAC
1 CATAAAACATAAACCCCT-AACCCCTAAC
* *
33946322 CATAAACCCTAAACCCCTAACCCCTAACC
1 CATAAAACATAAACCCCTAACCCCTAA-C
* * *
33946351 CCTAAACCTTAAACCCC--ACCCCTTAAAC
1 CATAAAACATAAACCCCTAACCCC-T-AAC
33946379 CATAAA
1 CATAAA
33946385 CCTTAATTCA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
27 5 0.09
28 27 0.50
29 22 0.41
ACGTcount: A:0.43, C:0.42, G:0.00, T:0.15
Consensus pattern (28 bp):
CATAAAACATAAACCCCTAACCCCTAAC
Found at i:33946379 original size:21 final size:20
Alignment explanation
Indices: 33946348--33946386 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
33946338 CTAACCCCTA
*
33946348 ACCCCTAAACCTTAAACCCC
1 ACCCCTAAACCATAAACCCC
33946368 ACCCCTTAAACCATAAACC
1 ACCCC-TAAACCATAAACC
33946387 TTAATTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (20 bp):
ACCCCTAAACCATAAACCCC
Found at i:33946388 original size:14 final size:14
Alignment explanation
Indices: 33946280--33946390 Score: 71
Period size: 14 Copynumber: 7.9 Consensus size: 14
33946270 TAACCCTTCT
*
33946280 CCTAAACCTTAAAT
1 CCTAAACCTTAAAC
* * *
33946294 CATAAAACATAAAC
1 CCTAAACCTTAAAC
*
33946308 CCTAAACCCCT-AAC
1 CCTAAA-CCTTAAAC
* *
33946322 CATAAACCCTAAACC
1 CCTAAACCTTAAA-C
* * *
33946337 CCTAACCCCTAACC
1 CCTAAACCTTAAAC
33946351 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
* **
33946365 CCCACCCCTTAAAC
1 CCTAAACCTTAAAC
*
33946379 CATAAACCTTAA
1 CCTAAACCTTAA
33946391 TTCATAATCC
Statistics
Matches: 73, Mismatches: 21, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
13 4 0.05
14 56 0.77
15 13 0.18
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.18
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:33947273 original size:96 final size:96
Alignment explanation
Indices: 33947118--33947293 Score: 352
Period size: 96 Copynumber: 1.8 Consensus size: 96
33947108 AATATAAATT
33947118 TAAGGGTTAAAAAGATAAAAATTAAATAAAGGGTTGTAACGATTTTTTTGTAAAGTTAGAAGGAT
1 TAAGGGTTAAAAAGATAAAAATTAAATAAAGGGTTGTAACGATTTTTTTGTAAAGTTAGAAGGAT
33947183 AAATAAATCATTATGAGCTGCCAATATAAGG
66 AAATAAATCATTATGAGCTGCCAATATAAGG
33947214 TAAGGGTTAAAAAGATAAAAATTAAATAAAGGGTTGTAACGATTTTTTTGTAAAGTTAGAAGGAT
1 TAAGGGTTAAAAAGATAAAAATTAAATAAAGGGTTGTAACGATTTTTTTGTAAAGTTAGAAGGAT
33947279 AAATAAATCATTATG
66 AAATAAATCATTATG
33947294 TCTATTTTAT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.31
Consensus pattern (96 bp):
TAAGGGTTAAAAAGATAAAAATTAAATAAAGGGTTGTAACGATTTTTTTGTAAAGTTAGAAGGAT
AAATAAATCATTATGAGCTGCCAATATAAGG
Found at i:33947621 original size:41 final size:40
Alignment explanation
Indices: 33947500--33947741 Score: 227
Period size: 41 Copynumber: 6.0 Consensus size: 40
33947490 CTAAAAGTAA
* *** * *
33947500 AGCATTAGCGGTGCTTTTTCAAAAACGTCGCTAAATCCCT
1 AGCATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCT
* * *
33947540 -GTTCATTAGCGGCGCTT-CCTAAAAACACCGCTAAATCCCT
1 AG--CATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCT
* **
33947580 ATTCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCT
1 A-GCATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCT
* * * * *
33947621 AAGAATTAGCGACGCTTCCCCAGAAATGCCGCTAAAGCCCCG
1 -AGCATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAG-CCCT
*
33947663 AGCATTAGCGGCGCTTCCCCAAAAATGCCGCTAAAGCCCT
1 AGCATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCT
* * *
33947703 GAGCATTAGCAGTGCTTCCCTAAAAACGCCGCTAAAGCC
1 -AGCATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCC
33947742 TCGAAAGCTC
Statistics
Matches: 166, Mismatches: 28, Indels: 15
0.79 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 35 0.21
41 126 0.76
42 4 0.02
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (40 bp):
AGCATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCT
Found at i:33947629 original size:81 final size:82
Alignment explanation
Indices: 33947500--33947741 Score: 272
Period size: 82 Copynumber: 3.0 Consensus size: 82
33947490 CTAAAAGTAA
* * * * **
33947500 AGCATTAGCGGTGCTTTTTCAAAAACGTCGCTAAATCCCTGTTCATTAGCGGCGCTT-CCTAAAA
1 AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCCTAAAA
* * *
33947564 ACACCGCTAAA-TCCCT
66 ACGCCGCTAAAGCCCCG
* * * * * *
33947580 ATTCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTAAGAATTAGCGACGCTTCCCCAGA
1 A-GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCCTAAA
*
33947645 AATGCCGCTAAAGCCCCG
65 AACGCCGCTAAAGCCCCG
** * * *
33947663 AGCATTAGCGGCGCTTCCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCAGTGCTTCCCTAAAA
1 AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCCTAAAA
33947728 ACGCCGCTAAAGCC
66 ACGCCGCTAAAGCC
33947742 TCGAAAGCTC
Statistics
Matches: 131, Mismatches: 28, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
80 1 0.01
81 46 0.35
82 80 0.61
83 4 0.03
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (82 bp):
AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCCTAAAA
ACGCCGCTAAAGCCCCG
Found at i:33950908 original size:74 final size:74
Alignment explanation
Indices: 33950814--33950953 Score: 253
Period size: 74 Copynumber: 1.9 Consensus size: 74
33950804 ACACGCTATT
*
33950814 TAGATTCAATTCATACCCGTACAGAATAATTCAATATCATTAACAGTTATCATACGCAATATACA
1 TAGATACAATTCATACCCGTACAGAATAATTCAATATCATTAACAGTTATCATACGCAATATACA
33950879 CCGACCATC
66 CCGACCATC
* *
33950888 TAGATACAGTTCATATCCGTACAGAATAATTCAATATCATTAACAGTTATCATACGCAATATACA
1 TAGATACAATTCATACCCGTACAGAATAATTCAATATCATTAACAGTTATCATACGCAATATACA
33950953 C
66 C
33950954 ACAAATTTTT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (74 bp):
TAGATACAATTCATACCCGTACAGAATAATTCAATATCATTAACAGTTATCATACGCAATATACA
CCGACCATC
Found at i:33967872 original size:3 final size:3
Alignment explanation
Indices: 33967864--33967898 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
33967854 ATTCCCCTGC
33967864 ACA ACA ACA A-A A-A ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
33967899 AAACCCCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:33970358 original size:21 final size:22
Alignment explanation
Indices: 33970332--33970375 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
33970322 CTTCATTTTT
*
33970332 AAAAATTAA-TTTTAATTGTTA
1 AAAAATAAATTTTTAATTGTTA
*
33970353 AAAAATAAATTTTTAATTTTTA
1 AAAAATAAATTTTTAATTGTTA
33970375 A
1 A
33970376 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AAAAATAAATTTTTAATTGTTA
Found at i:33970860 original size:91 final size:91
Alignment explanation
Indices: 33970700--33970880 Score: 326
Period size: 91 Copynumber: 2.0 Consensus size: 91
33970690 TGAAGTAATT
33970700 TACTTGGAATTTTTACCAACAAAAAGAGTTGGTCTACCAGATGGCGAAGAAAATAGAAGGACAAC
1 TACTTGGAATTTTTACCAACAAAAAGAGTTGGTCTACCAGATGGCGAAGAAAATAGAAGGACAAC
33970765 ATCAACTTCACACAATATATTAAGTA
66 ATCAACTTCACACAATATATTAAGTA
* * *
33970791 TACTTGGAATTTTTACCAACAAAAAGAGTTGGTCTACCAGATGGTGAAGAAAATAGAAGGGCAAG
1 TACTTGGAATTTTTACCAACAAAAAGAGTTGGTCTACCAGATGGCGAAGAAAATAGAAGGACAAC
*
33970856 ATCAACTTCACACAGTATATTAAGT
66 ATCAACTTCACACAATATATTAAGT
33970881 TCTTTAGCTT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.25
Consensus pattern (91 bp):
TACTTGGAATTTTTACCAACAAAAAGAGTTGGTCTACCAGATGGCGAAGAAAATAGAAGGACAAC
ATCAACTTCACACAATATATTAAGTA
Found at i:33971308 original size:87 final size:87
Alignment explanation
Indices: 33971193--33971365 Score: 256
Period size: 87 Copynumber: 2.0 Consensus size: 87
33971183 GCCTAAAATT
* * *
33971193 TTCGGGTTCTTCTCTTTTTGAACATTGATGTTTTTCATTTTCCCTTTAGAGAATGAGAAAATTAA
1 TTCGGGTTCTTCTCTTTTTGAACATTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAAATTAA
* *
33971258 AAATAATGTGCGTGCGATGATA
66 AAATAACGTACGTGCGATGATA
* * * *
33971280 TTCGGGTTCTTCTCTTTTTGTACTTTGATGTTTTTCACTTTCCATTTATAGAATAAGAAAATTGA
1 TTCGGGTTCTTCTCTTTTTGAACATTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAAATTAA
*
33971345 AAATAACGTATGTGCGATGAT
66 AAATAACGTACGTGCGATGAT
33971366 GGGACCACAT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (87 bp):
TTCGGGTTCTTCTCTTTTTGAACATTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAAATTAA
AAATAACGTACGTGCGATGATA
Found at i:33971730 original size:84 final size:84
Alignment explanation
Indices: 33971631--33971797 Score: 289
Period size: 84 Copynumber: 2.0 Consensus size: 84
33971621 AACCTAATTA
* **
33971631 TTTTATATATTTGAACTTGATCTGCTTCGAATATGATACAACATTCAACTTCAAAATTTATTTCA
1 TTTTACATATTTGAACTCAATCTGCTTCGAATATGATACAACATTCAACTTCAAAATTTATTTCA
33971696 AAATAATTTTTCCGGCACG
66 AAATAATTTTTCCGGCACG
*
33971715 TTTTACATATTTGAACTCAATCTGGTTCGAATATGATACAACATTCAACTTCAAAATTTATTTCA
1 TTTTACATATTTGAACTCAATCTGCTTCGAATATGATACAACATTCAACTTCAAAATTTATTTCA
*
33971780 AAATAATTTTTCTGGCAC
66 AAATAATTTTTCCGGCAC
33971798 ACTTAAAATT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (84 bp):
TTTTACATATTTGAACTCAATCTGCTTCGAATATGATACAACATTCAACTTCAAAATTTATTTCA
AAATAATTTTTCCGGCACG
Found at i:33972098 original size:93 final size:93
Alignment explanation
Indices: 33971939--33972125 Score: 356
Period size: 93 Copynumber: 2.0 Consensus size: 93
33971929 TTACTTTTTA
33971939 GTCACTAAACTTCAATAAGTTATGATATGATGACTAATGTTATCAATTTGTTACGTTTTGGAAAC
1 GTCACTAAACTTCAATAAGTTATGATATGATGACTAATGTTATCAATTTGTTACGTTTTGGAAAC
33972004 TAAGACGTCAACTTTGTAACAGTAAATT
66 TAAGACGTCAACTTTGTAACAGTAAATT
*
33972032 GTCACTAAACTTCAATAAGTTATGATATGATTACTAATGTTATCAATTTGTTACGTTTTGGAAAC
1 GTCACTAAACTTCAATAAGTTATGATATGATGACTAATGTTATCAATTTGTTACGTTTTGGAAAC
*
33972097 TAAGACGTCAACTTTGTAACAGTCAATT
66 TAAGACGTCAACTTTGTAACAGTAAATT
33972125 G
1 G
33972126 CGTGACACGT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 92 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (93 bp):
GTCACTAAACTTCAATAAGTTATGATATGATGACTAATGTTATCAATTTGTTACGTTTTGGAAAC
TAAGACGTCAACTTTGTAACAGTAAATT
Found at i:33972688 original size:91 final size:91
Alignment explanation
Indices: 33972531--33972712 Score: 310
Period size: 91 Copynumber: 2.0 Consensus size: 91
33972521 GCGTACTGCT
*
33972531 GCTTAATATTACTTTAAACGATAGATAACCAGTGAGTCAATATTTACTTTCATTTTACTTTGCGT
1 GCTTAATATTACTTTAAACGATAGATAACCAGTGAGTCAATATTTACTTTCATTTTACTTTACGT
33972596 GCAAAAACCGTTGAGGACAATATATA
66 GCAAAAACCGTTGAGGACAATATATA
* * * *
33972622 GCTTAATGTTACTTTAAACGATAGATAACCAGTGATTCAATATTTTCTTTCATTTTATTTTACGT
1 GCTTAATATTACTTTAAACGATAGATAACCAGTGAGTCAATATTTACTTTCATTTTACTTTACGT
*
33972687 GCAAAATCCGTTGAGGACAATATATA
66 GCAAAAACCGTTGAGGACAATATATA
33972713 AAATAGATTG
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 85 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (91 bp):
GCTTAATATTACTTTAAACGATAGATAACCAGTGAGTCAATATTTACTTTCATTTTACTTTACGT
GCAAAAACCGTTGAGGACAATATATA
Found at i:33974293 original size:27 final size:27
Alignment explanation
Indices: 33974263--33974440 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
33974253 TTATTGAGCC
* *
33974263 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
33974290 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
33974317 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
33974345 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
33974372 CGCACACTTAGTGC-ATCAT-ATCCATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* *
33974399 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
33974426 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33974441 GTACAATTTA
Statistics
Matches: 128, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 101 0.79
28 26 0.20
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:33974355 original size:55 final size:55
Alignment explanation
Indices: 33974263--33974439 Score: 209
Period size: 54 Copynumber: 3.3 Consensus size: 55
33974253 TTATTGAGCC
* * * * *
33974263 CGCACACTCAGTGCTAT-ATAAT-CAACTCGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCCATCAT-ATCCATCTCGCACACTTAGTGCAACATAGTCAAAT
** * *
33974317 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCAACATAGTCAAAT
* *
33974372 CGCACACTTAGTG-CATCATATCCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCAACATAGTCAAAT
33974426 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33974440 TGTACAATTT
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.01
54 60 0.58
55 43 0.41
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:33974402 original size:82 final size:81
Alignment explanation
Indices: 33974284--33974439 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
33974274 TGCTATATAA
* *
33974284 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCCA-ATCGCA
33974349 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* ** *
33974366 TCAATTCGCACACTTAGTGC-ATCAT-ATCCATTTCGCACACTTAGTGCAACATAGTCGAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAAT-CAAATCGCACACTTAGTGCAACATAGTCCAATCGC
33974429 ACACTTAGTGC
64 ACACTTAGTGC
33974440 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCCAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33978638 original size:115 final size:116
Alignment explanation
Indices: 33978434--33978661 Score: 404
Period size: 115 Copynumber: 2.0 Consensus size: 116
33978424 CTTTATTTTT
* * *
33978434 TATGTGCTTTTTTAAATTCTTTTTTTTTTGGTTTTCAAAGGAAAAACCAATGGTATTTATATATG
1 TATGTGCGTTTTTAAATTC-TTTTTTTCTGGCTTTCAAAGGAAAAACCAATGGTATTTATATATG
*
33978499 TAAATATTAGTTGTAATCATTTATTATGTAATTATTAGGAGAATCTAACTTC
65 TAAATATGAGTTGTAATCATTTATTATGTAATTATTAGGAGAATCTAACTTC
33978551 TATGTGCGTTTTTAAATTC-TTTTTTCTGGCTTTCAAAGGAAAAACCAATGGTATTTATATATGT
1 TATGTGCGTTTTTAAATTCTTTTTTTCTGGCTTTCAAAGGAAAAACCAATGGTATTTATATATGT
33978615 AAATATGAGTTGTAATCATTTATTATGTAATTATTAGGAGAATCTAA
66 AAATATGAGTTGTAATCATTTATTATGTAATTATTAGGAGAATCTAA
33978662 GCTTATTTAA
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
115 89 0.83
117 18 0.17
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (116 bp):
TATGTGCGTTTTTAAATTCTTTTTTTCTGGCTTTCAAAGGAAAAACCAATGGTATTTATATATGT
AAATATGAGTTGTAATCATTTATTATGTAATTATTAGGAGAATCTAACTTC
Found at i:33978940 original size:110 final size:110
Alignment explanation
Indices: 33978747--33978962 Score: 432
Period size: 110 Copynumber: 2.0 Consensus size: 110
33978737 ATTTTGCCAA
33978747 AAATATCTGGGTACTTCTCTTTTTGTACTTTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAA
1 AAATATCTGGGTACTTCTCTTTTTGTACTTTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAA
33978812 ATTTAAAATAACGTGCGTGCGAAGATGGCACCACATTGGCTCCAT
66 ATTTAAAATAACGTGCGTGCGAAGATGGCACCACATTGGCTCCAT
33978857 AAATATCTGGGTACTTCTCTTTTTGTACTTTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAA
1 AAATATCTGGGTACTTCTCTTTTTGTACTTTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAA
33978922 ATTTAAAATAACGTGCGTGCGAAGATGGCACCACATTGGCT
66 ATTTAAAATAACGTGCGTGCGAAGATGGCACCACATTGGCT
33978963 GATTTTTTTT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 106 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (110 bp):
AAATATCTGGGTACTTCTCTTTTTGTACTTTGATGTTTTTCACTTTCCATTTAGAGAATAAGAAA
ATTTAAAATAACGTGCGTGCGAAGATGGCACCACATTGGCTCCAT
Found at i:33980890 original size:95 final size:97
Alignment explanation
Indices: 33980780--33980972 Score: 266
Period size: 95 Copynumber: 2.0 Consensus size: 97
33980770 GAAAGCTCAA
* * * * *
33980780 CCTCTGATTCTCTTTCTTTGATTTGCTGCTCGATTG-TAAATTGATTCTGAG-AAAA-ATAAAAA
1 CCTCTAATTCTCTTTCTCTAATTTGCTGCTCCATTGCT-AATTGATTCTGAGAAAAACAAAAAAA
* *
33980842 AAATTGTTTAGTTTCATGCTTAACAATTTCATG
65 AAATTGTTCAGTTTCATGCTTAAAAATTTCATG
* *
33980875 CCTCTAATTCTCTTTCTCTAATTTGCTGCTCCATTGCTATTTGATTCTGTGAAAAACAAAAAAAA
1 CCTCTAATTCTCTTTCTCTAATTTGCTGCTCCATTGCTAATTGATTCTGAGAAAAACAAAAAAAA
*
33980940 AATTGTTCAGTTTTATGCTTAAAAATTTCATG
66 AATTGTTCAGTTTCATGCTTAAAAATTTCATG
33980972 C
1 C
33980973 ATTGAAACTT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
95 43 0.51
96 5 0.06
97 37 0.44
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (97 bp):
CCTCTAATTCTCTTTCTCTAATTTGCTGCTCCATTGCTAATTGATTCTGAGAAAAACAAAAAAAA
AATTGTTCAGTTTCATGCTTAAAAATTTCATG
Found at i:33983471 original size:211 final size:211
Alignment explanation
Indices: 33983107--33983516 Score: 687
Period size: 211 Copynumber: 1.9 Consensus size: 211
33983097 AATAAAAAAA
* *
33983107 CTTGTACCAAATATAGCATCCTATGAAATAACATATTAACCTAATTATTTTATATATTTGAACTC
1 CTTGTACCAAATATAACATCCTATGAAATAACATATTAACCTAATTACTTTATATATTTGAACTC
* * * ** * * *
33983172 GATCTACTTCGAATATGATACAACATTCAACTTCAAAATTTCTTTCAAAATAATTTTTTCGGCTC
66 GAACTACATCGAATATGATACAACATTAAACTTCAAAATTGATTTCAAAATAAATTTTCCGGCAC
*
33983237 TCTTATAATTTTACAAAATATTTTATGTTGAACTCTTCCATCCCAATAAAAATGTCACAATTCAC
131 TCTTATAATTTTACAAAATATTTTATGTTAAACTCTTCCATCCCAATAAAAATGTCACAATTCAC
33983302 TTTTGTATACATGGGG
196 TTTTGTATACATGGGG
*
33983318 CTTGTACCAAATATAACATCCTATGAAATAACATATTAACCTATTTACTTTATATATTTGAACTC
1 CTTGTACCAAATATAACATCCTATGAAATAACATATTAACCTAATTACTTTATATATTTGAACTC
*
33983383 GAACTGCATCGAATATGATACAACATTAAACTTCAAAATTGATTTCAAAATAAATTTTCCGGCAC
66 GAACTACATCGAATATGATACAACATTAAACTTCAAAATTGATTTCAAAATAAATTTTCCGGCAC
33983448 TCTTA-ATATTTTACAAAATATTTTATGTTAAACTCTTCCATCCCAATAAAAATGTCACAATTCA
131 TCTTATA-ATTTTACAAAATATTTTATGTTAAACTCTTCCATCCCAATAAAAATGTCACAATTCA
33983512 CTTTT
195 CTTTT
33983517 TAAATATGGT
Statistics
Matches: 185, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
210 1 0.01
211 184 0.99
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.38
Consensus pattern (211 bp):
CTTGTACCAAATATAACATCCTATGAAATAACATATTAACCTAATTACTTTATATATTTGAACTC
GAACTACATCGAATATGATACAACATTAAACTTCAAAATTGATTTCAAAATAAATTTTCCGGCAC
TCTTATAATTTTACAAAATATTTTATGTTAAACTCTTCCATCCCAATAAAAATGTCACAATTCAC
TTTTGTATACATGGGG
Found at i:33983998 original size:86 final size:86
Alignment explanation
Indices: 33983853--33984016 Score: 310
Period size: 86 Copynumber: 1.9 Consensus size: 86
33983843 TGACAAGTGT
*
33983853 CATATTAGTCTTTCAATCGATTTTTTCAATCTCGATTAGACTAAGCATGTGTTAAGATTATCCAC
1 CATATTAGTCTTTCAATCGATTTTTTCAATCTCGATTAGACTAAGAATGTGTTAAGATTATCCAC
33983918 TAATATAAGTTGTACTGGTGA
66 TAATATAAGTTGTACTGGTGA
*
33983939 CATATTAGTCTTTCAATCGATTTTTTCAATCTCGATTAGACTTAGAATGTGTTAAGATTATCCAC
1 CATATTAGTCTTTCAATCGATTTTTTCAATCTCGATTAGACTAAGAATGTGTTAAGATTATCCAC
33984004 TAATATAAGTTGT
66 TAATATAAGTTGT
33984017 GTTTACGCAT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 76 1.00
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (86 bp):
CATATTAGTCTTTCAATCGATTTTTTCAATCTCGATTAGACTAAGAATGTGTTAAGATTATCCAC
TAATATAAGTTGTACTGGTGA
Found at i:33984800 original size:3 final size:3
Alignment explanation
Indices: 33984792--33984823 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
33984782 ATTCCCCTGC
33984792 ACA ACA ACA A-A A-A ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
33984824 AACCCCCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:33986556 original size:23 final size:25
Alignment explanation
Indices: 33986498--33986558 Score: 76
Period size: 23 Copynumber: 2.6 Consensus size: 25
33986488 TATAGAAATG
33986498 TATAATAAAATAAAATAATAATACC
1 TATAATAAAATAAAATAATAATACC
* *
33986523 TA-AA-AACATAAAATAAT-AT-CT
1 TATAATAAAATAAAATAATAATACC
33986544 TATAATAAAATAAAA
1 TATAATAAAATAAAA
33986559 GGATCTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 3 0.10
22 4 0.13
23 20 0.65
24 2 0.06
25 2 0.06
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (25 bp):
TATAATAAAATAAAATAATAATACC
Found at i:33986620 original size:3 final size:3
Alignment explanation
Indices: 33986612--33986654 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
33986602 AATAAAAGAC
* * *
33986612 TAA TAA TAA TAA TAA TAA TGAC TAA TAA AAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
33986655 ATCAATTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:33986637 original size:22 final size:20
Alignment explanation
Indices: 33986593--33986648 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 20
33986583 AAAAAATAAA
33986593 AATATAAAA-AATAAAAGACT
1 AATA-AAAATAATAAAAGACT
*
33986613 AATAATAATAATAATAATGACT
1 AATAAAAATAATAA-AA-GACT
33986635 AATAAAAATAATAA
1 AATAAAAATAATAA
33986649 CAATAAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.10
20 9 0.29
21 2 0.06
22 17 0.55
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (20 bp):
AATAAAAATAATAAAAGACT
Found at i:33987900 original size:20 final size:20
Alignment explanation
Indices: 33987853--33987900 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
33987843 CAACATCTTC
* *
33987853 ATTTTTAAAAATTACTTTTA
1 ATTTTTAAAAAATAATTTTA
* *
33987873 ATTGTTAAAAAATAATTTTT
1 ATTTTTAAAAAATAATTTTA
33987893 ATTTTTAA
1 ATTTTTAA
33987901 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTTTTAAAAAATAATTTTA
Found at i:33990466 original size:3 final size:3
Alignment explanation
Indices: 33990458--33990491 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
33990448 ATTCCCCTCC
33990458 ACA ACA ACA A-A A-A ACA ACA ACA ACA ACA ACA ACA
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
33990492 GCAAAAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:33994891 original size:17 final size:17
Alignment explanation
Indices: 33994869--33994901 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33994859 CACTAACATG
*
33994869 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
33994886 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
33994902 GTGTACTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:33995390 original size:21 final size:21
Alignment explanation
Indices: 33995364--33995417 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
33995354 TCATCATCAG
* *
33995364 CAACTTCTTCTTTTTCAGCAA
1 CAACTTCTTCTTCTACAGCAA
* *
33995385 CAACTTCCTCTTCTACAGCAG
1 CAACTTCTTCTTCTACAGCAA
33995406 CAACTTTCTTCT
1 CAAC-TTCTTCT
33995418 CAACAATAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (21 bp):
CAACTTCTTCTTCTACAGCAA
Found at i:34008649 original size:15 final size:15
Alignment explanation
Indices: 34008631--34008661 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
34008621 AAAACAGAGT
34008631 AATAATAATCAGAAG
1 AATAATAATCAGAAG
34008646 AATAATAATCAGAAG
1 AATAATAATCAGAAG
34008661 A
1 A
34008662 CTCTAGATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.13, T:0.19
Consensus pattern (15 bp):
AATAATAATCAGAAG
Found at i:34017233 original size:21 final size:23
Alignment explanation
Indices: 34017190--34017237 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
34017180 TTTTTTCAAC
*
34017190 ATAAATATTAATTATTAATTTAA
1 ATAAATATAAATTATTAATTTAA
*
34017213 ATAAAT-TAAATTTTTAA-TTAA
1 ATAAATATAAATTATTAATTTAA
34017234 ATAA
1 ATAA
34017238 TTTTCTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 9 0.39
23 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAAATATAAATTATTAATTTAA
Found at i:34021229 original size:5 final size:5
Alignment explanation
Indices: 34021219--34021246 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
34021209 TGAAGCATAT
34021219 AATTC AATTC AATTC AATTC AATTC AAT
1 AATTC AATTC AATTC AATTC AATTC AAT
34021247 CACTCGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (5 bp):
AATTC
Found at i:34023203 original size:18 final size:19
Alignment explanation
Indices: 34023180--34023215 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
34023170 CATTTTGCAC
*
34023180 AACATTTCAA-TTGACATT
1 AACATTCCAACTTGACATT
34023198 AACATTCCAACTTGACAT
1 AACATTCCAACTTGACAT
34023216 ATTATAACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (19 bp):
AACATTCCAACTTGACATT
Found at i:34025181 original size:40 final size:40
Alignment explanation
Indices: 34025083--34025385 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
34025073 TCCTCGTTCA
* * * * *
34025083 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34025122 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34025162 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34025202 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
34025242 AATGCCTTTGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34025282 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * * *
34025322 AAGGCCTTC-GGATCATAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34025362 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34025386 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.16
40 191 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34027293 original size:31 final size:31
Alignment explanation
Indices: 34027233--34027382 Score: 187
Period size: 31 Copynumber: 4.9 Consensus size: 31
34027223 GGGCATCAAC
*
34027233 CATTCATA-TTTACATATTCATACCTTGTAAT
1 CATTCATACTTT-CATATTCATACCATGTAAT
* * *
34027264 CATACATACTTTCATAGTCATGCCATGTAAT
1 CATTCATACTTTCATATTCATACCATGTAAT
*
34027295 CATTCATA-TTTCATATTCATACCTTGTAAT
1 CATTCATACTTTCATATTCATACCATGTAAT
* * *
34027325 CATTCATACTTTTATATACATACCCTGTAAT
1 CATTCATACTTTCATATTCATACCATGTAAT
* *
34027356 CATTCATATTTTTATATTCATACCATG
1 CATTCATACTTTCATATTCATACCATG
34027383 CATTATCACA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
30 27 0.26
31 73 0.71
32 3 0.03
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.43
Consensus pattern (31 bp):
CATTCATACTTTCATATTCATACCATGTAAT
Found at i:34027316 original size:61 final size:61
Alignment explanation
Indices: 34027233--34027379 Score: 215
Period size: 61 Copynumber: 2.4 Consensus size: 61
34027223 GGGCATCAAC
*
34027233 CATTCATATTTACATATTCATACCTTGTAATCATACATACTTTCATAGT-CATGCCATGTAAT
1 CATTCATATTT-CATATTCATACCTTGTAATCATACATACTTTCATA-TACATACCATGTAAT
* * *
34027295 CATTCATATTTCATATTCATACCTTGTAATCATTCATACTTTTATATACATACCCTGTAAT
1 CATTCATATTTCATATTCATACCTTGTAATCATACATACTTTCATATACATACCATGTAAT
*
34027356 CATTCATATTTTTATATTCATACC
1 CATTCATA-TTTCATATTCATACC
34027380 ATGCATTATC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
60 1 0.01
61 52 0.67
62 25 0.32
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.44
Consensus pattern (61 bp):
CATTCATATTTCATATTCATACCTTGTAATCATACATACTTTCATATACATACCATGTAAT
Found at i:34027329 original size:17 final size:17
Alignment explanation
Indices: 34027248--34027363 Score: 81
Period size: 17 Copynumber: 7.4 Consensus size: 17
34027238 ATATTTACAT
34027248 ATTCATACCTTGTAATC
1 ATTCATACCTTGTAATC
* *
34027265 ATACATA-CTT-TCAT-
1 ATTCATACCTTGTAATC
* * *
34027279 AGTCATGCCATGTAATC
1 ATTCATACCTTGTAATC
*
34027296 ATTCATA--TT-TCAT-
1 ATTCATACCTTGTAATC
34027309 ATTCATACCTTGTAATC
1 ATTCATACCTTGTAATC
*
34027326 ATTCATA-CTT-TTAT-
1 ATTCATACCTTGTAATC
* *
34027340 ATACATACCCTGTAATC
1 ATTCATACCTTGTAATC
34027357 ATTCATA
1 ATTCATA
34027364 TTTTTATATT
Statistics
Matches: 72, Mismatches: 17, Indels: 20
0.66 0.16 0.18
Matches are distributed among these distances:
13 7 0.10
14 13 0.18
15 13 0.18
16 15 0.21
17 24 0.33
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (17 bp):
ATTCATACCTTGTAATC
Found at i:34028975 original size:18 final size:18
Alignment explanation
Indices: 34028924--34028975 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 18
34028914 ATTCATCCAG
* *
34028924 TATCGATACTTTTCTTAAGG
1 TATCGATA--TTTCCTAAGA
34028944 TATCGATGTATTTCCTAAGA
1 TATCGA--TATTTCCTAAGA
34028964 TATCGATATTTC
1 TATCGATATTTC
34028976 TGCTCCAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 6 0.21
20 20 0.71
22 2 0.07
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.44
Consensus pattern (18 bp):
TATCGATATTTCCTAAGA
Found at i:34034258 original size:26 final size:26
Alignment explanation
Indices: 34034218--34034284 Score: 125
Period size: 26 Copynumber: 2.5 Consensus size: 26
34034208 AAAAGTCTTT
34034218 TTGAGTTTTTCTTTTTAAGAATTTCTC
1 TTGAG-TTTTCTTTTTAAGAATTTCTC
34034245 TTGAGTTTTCTTTTTAAGAATTTCTC
1 TTGAGTTTTCTTTTTAAGAATTTCTC
34034271 TTGAGTTTTCTTTT
1 TTGAGTTTTCTTTT
34034285 AGAAGAGTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 35 0.88
27 5 0.12
ACGTcount: A:0.16, C:0.10, G:0.12, T:0.61
Consensus pattern (26 bp):
TTGAGTTTTCTTTTTAAGAATTTCTC
Found at i:34035390 original size:13 final size:13
Alignment explanation
Indices: 34035374--34035398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34035364 CAAGTATTCA
34035374 ACCCAACCCAATT
1 ACCCAACCCAATT
34035387 ACCCAACCCAAT
1 ACCCAACCCAAT
34035399 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:34035452 original size:6 final size:6
Alignment explanation
Indices: 34035443--34035467 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
34035433 AAAATTCTAC
34035443 AACTAA AACTAA AACTAA AACTAA A
1 AACTAA AACTAA AACTAA AACTAA A
34035468 GTCTAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
AACTAA
Found at i:34035521 original size:9 final size:9
Alignment explanation
Indices: 34035507--34035582 Score: 91
Period size: 9 Copynumber: 8.4 Consensus size: 9
34035497 ATAGTGATTC
34035507 AATTCGGTT
1 AATTCGGTT
*
34035516 AATTCGGGT
1 AATTCGGTT
*
34035525 AATTTGGTT
1 AATTCGGTT
34035534 AATTCAGG-T
1 AATTC-GGTT
*
34035543 AATTCGATT
1 AATTCGGTT
*
34035552 AATTCGGGT
1 AATTCGGTT
*
34035561 AATTAGGTT
1 AATTCGGTT
34035570 AATTCGGTT
1 AATTCGGTT
34035579 AATT
1 AATT
34035583 TTTAAACAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
8 1 0.02
9 52 0.95
10 2 0.04
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (9 bp):
AATTCGGTT
Found at i:34035533 original size:18 final size:18
Alignment explanation
Indices: 34035507--34035582 Score: 107
Period size: 18 Copynumber: 4.2 Consensus size: 18
34035497 ATAGTGATTC
34035507 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGGT
* *
34035525 AATTTGGTTAATTCAGGT
1 AATTCGGTTAATTCGGGT
*
34035543 AATTCGATTAATTCGGGT
1 AATTCGGTTAATTCGGGT
* *
34035561 AATTAGGTTAATTCGGTT
1 AATTCGGTTAATTCGGGT
34035579 AATT
1 AATT
34035583 TTTAAACAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (18 bp):
AATTCGGTTAATTCGGGT
Done.