Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 115 of 126
Found at i:35492468 original size:24 final size:24
Alignment explanation
Indices: 35492441--35492492 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
35492431 AAGCTATGAT
35492441 TTGTAAGTACAACTAGAACATTAC
1 TTGTAAGTACAACTAGAACATTAC
***
35492465 TTGTTTTTACAACTAGAACATTAC
1 TTGTAAGTACAACTAGAACATTAC
35492489 TTGT
1 TTGT
35492493 TTTTATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (24 bp):
TTGTAAGTACAACTAGAACATTAC
Found at i:35492493 original size:24 final size:24
Alignment explanation
Indices: 35492448--35492497 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
35492438 GATTTGTAAG
35492448 TACAACTAGAACATTACTTGTTTT
1 TACAACTAGAACATTACTTGTTTT
35492472 TACAACTAGAACATTACTTGTTTT
1 TACAACTAGAACATTACTTGTTTT
35492496 TA
1 TA
35492498 TTATGTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (24 bp):
TACAACTAGAACATTACTTGTTTT
Found at i:35499046 original size:40 final size:39
Alignment explanation
Indices: 35498957--35499140 Score: 173
Period size: 39 Copynumber: 4.6 Consensus size: 39
35498947 TTGAATGATG
*
35498957 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
35498995 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAT
* * *
35499036 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
*
35499075 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-TACTAAT
* *
35499114 AACCGGGCTATGTCCTGAAGGCATTTG
1 -TCCGGGCTAAGTCC-GAAGGCATTTG
35499141 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
39 56 0.46
40 55 0.45
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:35499052 original size:39 final size:41
Alignment explanation
Indices: 35498957--35499140 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
35498947 TTGAATGATG
*
35498957 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
35498996 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
35499036 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
35499075 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* * *
35499115 ACCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35499141 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 60 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:35499092 original size:79 final size:81
Alignment explanation
Indices: 35498957--35499140 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
35498947 TTGAATGATG
35498957 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
35499020 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
35499035 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
35499096 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* * *
35499115 ACCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35499141 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.64
80 22 0.24
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:35499162 original size:79 final size:79
Alignment explanation
Indices: 35499009--35499173 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
35498999 GGACTAAGAT
* ** *
35499009 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
35499074 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
35499088 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
35499150 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
35499167 CCGAAGG
1 CCGAAGG
35499174 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.63
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:35515381 original size:11 final size:12
Alignment explanation
Indices: 35515365--35515396 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
35515355 AGACTTTCCC
35515365 TTCTTTTTTT-T
1 TTCTTTTTTTCT
35515376 TTCTTTTTTTCT
1 TTCTTTTTTTCT
35515388 TT-TTTTTTT
1 TTCTTTTTTT
35515397 AAATTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.85
12 3 0.15
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (12 bp):
TTCTTTTTTTCT
Found at i:35515403 original size:19 final size:19
Alignment explanation
Indices: 35515365--35515403 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
35515355 AGACTTTCCC
***
35515365 TTCTTTTTTTTTTCTTTTT
1 TTCTTTTTTTTTTAAATTT
35515384 TTCTTTTTTTTTTAAATTT
1 TTCTTTTTTTTTTAAATTT
35515403 T
1 T
35515404 AAATTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (19 bp):
TTCTTTTTTTTTTAAATTT
Found at i:35516358 original size:23 final size:22
Alignment explanation
Indices: 35516326--35516371 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
35516316 TTTTTAATTA
35516326 TTTAAATAAAGAAATAATTTTAT
1 TTTAAATAAA-AAATAATTTTAT
* * *
35516349 TTTAATTAAATAATATTTTTAT
1 TTTAAATAAAAAATAATTTTAT
35516371 T
1 T
35516372 ATCTCAATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTAAATAAAAAATAATTTTAT
Found at i:35518739 original size:24 final size:24
Alignment explanation
Indices: 35518693--35518738 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
35518683 TTATGTGTAC
35518693 TTATTTTTTCTCTTCTTTCTTTTA
1 TTATTTTTTCTCTTCTTTCTTTTA
35518717 TTATTATTTT-TCTT-TTTCTTTT
1 TTATT-TTTTCTCTTCTTTCTTTT
35518739 TTTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.38
24 9 0.43
25 4 0.19
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (24 bp):
TTATTTTTTCTCTTCTTTCTTTTA
Found at i:35524689 original size:23 final size:22
Alignment explanation
Indices: 35524637--35524689 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
35524627 TCCACGTCTT
*
35524637 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
35524659 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
35524682 TTTCTTTT
1 TTTCTTTT
35524690 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:35529720 original size:10 final size:10
Alignment explanation
Indices: 35529705--35529783 Score: 65
Period size: 10 Copynumber: 7.9 Consensus size: 10
35529695 TTTAAAAAAC
35529705 AATAATTTTT
1 AATAATTTTT
35529715 AATAATTTTT
1 AATAATTTTT
*
35529725 -ACAATCTTTT
1 AATAAT-TTTT
**
35529735 -GCAATTTTT
1 AATAATTTTT
35529744 AATAATTATTTT
1 AATAA-T-TTTT
35529756 AATAATTTTT
1 AATAATTTTT
**
35529766 AATTTTTTTT
1 AATAATTTTT
35529776 AAT-ATTTT
1 AATAATTTT
35529784 AACATATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
9 12 0.21
10 35 0.60
11 2 0.03
12 9 0.16
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (10 bp):
AATAATTTTT
Found at i:35529769 original size:29 final size:28
Alignment explanation
Indices: 35529707--35529801 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 28
35529697 TAAAAAACAA
35529707 TAATTTTTAATAAT-TTTT-ACAATCTTT
1 TAATTTTTAATAATATTTTAACAAT-TTT
*
35529734 TGCAATTTTTAATAATTATTTTAATAATTTT
1 T--AATTTTTAATAA-TATTTTAACAATTTT
**
35529765 TAATTTTTTTTAATATTTTAACATATTTT
1 TAATTTTTAATAATATTTTAACA-ATTTT
*
35529794 TATTTTTT
1 TAATTTTT
35529802 TTAAATCGTA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
27 1 0.02
28 9 0.16
29 34 0.60
30 1 0.02
31 8 0.14
32 4 0.07
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (28 bp):
TAATTTTTAATAATATTTTAACAATTTT
Found at i:35529793 original size:20 final size:20
Alignment explanation
Indices: 35529737--35529794 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
35529727 AATCTTTTGC
*
35529737 AATTTTTAATAATTATTTTAAT
1 AATTTTAAAT-ATT-TTTTAAT
* *
35529759 AATTTTTAATTTTTTTTAAT
1 AATTTTAAATATTTTTTAAT
35529779 -ATTTTAACATATTTTT
1 AATTTTAA-ATATTTTT
35529795 ATTTTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.19
20 14 0.44
21 2 0.06
22 10 0.31
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
AATTTTAAATATTTTTTAAT
Found at i:35539953 original size:27 final size:27
Alignment explanation
Indices: 35539923--35540100 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35539913 ATATTGAGTC
* * * *
35539923 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35539950 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35539977 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35540005 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35540032 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35540059 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35540086 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35540101 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35540062 original size:82 final size:81
Alignment explanation
Indices: 35539944--35540099 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35539934 TGCTATATAA
* *
35539944 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35540009 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35540026 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35540090 CACTTAGTGC
65 CACTTAGTGC
35540100 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35563327 original size:58 final size:58
Alignment explanation
Indices: 35563251--35563406 Score: 183
Period size: 58 Copynumber: 2.7 Consensus size: 58
35563241 TCTAAAAATG
* * * * * *
35563251 GCCACGAAGGCGTCCTTTTAACAGAAATAGCCACAAAGGCATATTTTTAATAGAGAT-A
1 GCCACAAAGGCATTCTTTTAACA-AAATAGCCACAAAGGCAAACTTATAATAGAGATCA
*
35563309 GCCACAAAGGCATTCTTTTAA-ATAAGATAGCCACAAATGCAAACTTATAATAGAGATCA
1 GCCACAAAGGCATTCTTTTAACA-AA-ATAGCCACAAAGGCAAACTTATAATAGAGATCA
*
35563368 -CCACAAAGGCATTCTTTTAACTAAGATAGCCACAAAGGC
1 GCCACAAAGGCATTCTTTTAAC-AAAATAGCCACAAAGGC
35563407 TTCCTTTCAG
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
57 3 0.04
58 78 0.93
59 2 0.02
60 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (58 bp):
GCCACAAAGGCATTCTTTTAACAAAATAGCCACAAAGGCAAACTTATAATAGAGATCA
Found at i:35563413 original size:29 final size:28
Alignment explanation
Indices: 35563251--35563409 Score: 137
Period size: 29 Copynumber: 5.5 Consensus size: 28
35563241 TCTAAAAATG
* * * *
35563251 GCCACGAAGGCGTCCTTTTAACAGAAATA
1 GCCACAAAGGC-TTCTTTTAATAGAGATA
35563280 GCCACAAAGGCATAT-TTTTAATAGAGATA
1 GCCACAAAGGC-T-TCTTTTAATAGAGATA
35563309 GCCACAAAGGCATTCTTTTAAATA-AGATA
1 GCCACAAAGGC-TTCTTTT-AATAGAGATA
* ** *
35563338 GCCACAAATGCAAACTTATAATAGAGATCA
1 GCCACAAAGGC-TTCTTTTAATAGAGAT-A
35563368 -CCACAAAGGCATTCTTTTAACTA-AGATA
1 GCCACAAAGGC-TTCTTTTAA-TAGAGATA
35563396 GCCACAAAGGCTTC
1 GCCACAAAGGCTTC
35563410 CTTTCAGAGA
Statistics
Matches: 110, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
28 9 0.08
29 94 0.85
30 7 0.06
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.24
Consensus pattern (28 bp):
GCCACAAAGGCTTCTTTTAATAGAGATA
Found at i:35563430 original size:26 final size:26
Alignment explanation
Indices: 35563391--35563459 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
35563381 CTTTTAACTA
* *
35563391 AGATAGCCACAAAGGCTTCCTTTCAG
1 AGATAACCACAAAGGCTTCCATTCAG
* * *
35563417 AGATAACCATAAAGGCGTGCATTCAG
1 AGATAACCACAAAGGCTTCCATTCAG
*
35563443 AGATAACCGCAAAGGCT
1 AGATAACCACAAAGGCT
35563460 CTATAACCCC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (26 bp):
AGATAACCACAAAGGCTTCCATTCAG
Found at i:35566740 original size:26 final size:27
Alignment explanation
Indices: 35566711--35566767 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
35566701 TAAAACGGTA
35566711 ATTTTA-CCTCTAGGGGTATTTTGGTC
1 ATTTTACCCTCTAGGGGTATTTTGGTC
* *
35566737 ATTTTACCCTTTATGGGTATTTTGGTC
1 ATTTTACCCTCTAGGGGTATTTTGGTC
35566764 ATTT
1 ATTT
35566768 AATAACTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (27 bp):
ATTTTACCCTCTAGGGGTATTTTGGTC
Found at i:35577741 original size:42 final size:42
Alignment explanation
Indices: 35577682--35577819 Score: 161
Period size: 42 Copynumber: 3.1 Consensus size: 42
35577672 ATACTGACCT
35577682 TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
1 TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
*
35577724 TAAAGTAAGTCATAGCTTTCTGGTTCCACATATGTCTCGACTTCTAAATAG
1 TAAAGTAAGTCATAGCTTTCTGGTTCCACA-A-------ACGTCT-AATAG
* *
35577775 -GAAGTAAGTCATAGCTTTTTGGTTCCACAAACGTCTAATAG
1 TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
35577816 TAAA
1 TAAA
35577820 TTAAAAAATG
Statistics
Matches: 81, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
41 5 0.06
42 37 0.46
43 1 0.01
49 1 0.01
50 32 0.40
51 5 0.06
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Consensus pattern (42 bp):
TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
Found at i:35584198 original size:18 final size:18
Alignment explanation
Indices: 35584175--35584210 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
35584165 CTTTTTTCCA
*
35584175 TATTAGTACGTCCTAGGT
1 TATTAGCACGTCCTAGGT
35584193 TATTAGCACGTCCTAGGT
1 TATTAGCACGTCCTAGGT
35584211 CTACATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (18 bp):
TATTAGCACGTCCTAGGT
Found at i:35584264 original size:37 final size:37
Alignment explanation
Indices: 35584213--35584290 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
35584203 TCCTAGGTCT
*
35584213 ACATAGTTGGTGTTC-TGTTTTGCAATGACATAATTTG
1 ACATAGTTGATGTTCAT-TTTTGCAATGACATAATTTG
35584250 ACATAGTTGATGTTCATTTTTGCAATGACATAATTTG
1 ACATAGTTGATGTTCATTTTTGCAATGACATAATTTG
35584287 ACAT
1 ACAT
35584291 TATGTTAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (37 bp):
ACATAGTTGATGTTCATTTTTGCAATGACATAATTTG
Found at i:35589939 original size:31 final size:30
Alignment explanation
Indices: 35589867--35589941 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 30
35589857 AAATATGTAT
*
35589867 TTTTTATTTTTTA-AATAA-ATTTA-ATAA
1 TTTTTATTTTTTATAATAATTTTTATATAA
**
35589894 TTATTTATGATTTATAATAATTTTTATATAA
1 TT-TTTATTTTTTATAATAATTTTTATATAA
35589925 TTTTATATTTTTTATAA
1 TTTT-TATTTTTTATAA
35589942 CTACAATTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.05
28 9 0.24
29 5 0.13
30 6 0.16
31 16 0.42
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (30 bp):
TTTTTATTTTTTATAATAATTTTTATATAA
Found at i:35590095 original size:16 final size:17
Alignment explanation
Indices: 35590074--35590112 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
35590064 TTTTAAATAA
35590074 TTATTTTAAA-TTTTAT
1 TTATTTTAAAGTTTTAT
35590090 TTA-TTTAAAGTTTTAT
1 TTATTTTAAAGTTTTAT
35590106 TTATTTT
1 TTATTTT
35590113 TTAAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.29
16 12 0.57
17 3 0.14
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TTATTTTAAAGTTTTAT
Found at i:35593919 original size:9 final size:9
Alignment explanation
Indices: 35593905--35594020 Score: 58
Period size: 10 Copynumber: 12.4 Consensus size: 9
35593895 CATATGACAA
35593905 AAAAATTAT
1 AAAAATTAT
35593914 AAAAA-T-T
1 AAAAATTAT
*
35593921 AAAAATCAAT
1 AAAAAT-TAT
*
35593931 AAAAGTTAT
1 AAAAATTAT
35593940 AAAAATT-T
1 AAAAATTAT
* *
35593948 TAAATTTACT
1 AAAAATTA-T
*
35593958 AAAAATTAGAA
1 AAAAATT--AT
*
35593969 AAAAGAATAT
1 AAAA-ATTAT
*
35593979 AAAAATTGT
1 AAAAATTAT
*
35593988 AAAATTTTAT
1 AAAA-ATTAT
* *
35593998 AAATATCAT
1 AAAAATTAT
35594007 AAAAAATTAT
1 -AAAAATTAT
35594017 AAAA
1 AAAA
35594021 TAAATTAAAA
Statistics
Matches: 77, Mismatches: 20, Indels: 20
0.66 0.17 0.17
Matches are distributed among these distances:
7 6 0.08
8 7 0.09
9 27 0.35
10 30 0.39
11 4 0.05
12 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:35594394 original size:20 final size:17
Alignment explanation
Indices: 35594363--35594418 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
35594353 AATTAAAAAA
35594363 ATTTAT-ATTTTTATTAAC
1 ATTTATAATTTTTATT--C
*
35594381 ATTTAATAATTTTTATTT
1 ATTT-ATAATTTTTATTC
35594399 ATTTATAATTTTTA-TC
1 ATTTATAATTTTTATTC
35594415 ATTT
1 ATTT
35594419 TGTCACATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 5 0.15
17 10 0.29
18 8 0.24
19 2 0.06
20 9 0.26
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTATAATTTTTATTC
Found at i:35597661 original size:27 final size:27
Alignment explanation
Indices: 35597553--35597655 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
35597543 TAACAGTCAG
*
35597553 TTTACCCTATGGGGGGTATTTCGATAAT
1 TTTACCC-ATCGGGGGTATTTCGATAAT
* *
35597581 TTTACCTATCAGGGGTATTTCGATAAT
1 TTTACCCATCGGGGGTATTTCGATAAT
* **
35597608 TTTACCCTTCTAGGGTATTTCGATAAT
1 TTTACCCATCGGGGGTATTTCGATAAT
35597635 TTTACCCATCGGGGGTATTTC
1 TTTACCCATCGGGGGTATTTC
35597656 AGTAATGTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
27 59 0.91
28 6 0.09
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTACCCATCGGGGGTATTTCGATAAT
Found at i:35599138 original size:25 final size:25
Alignment explanation
Indices: 35599100--35599153 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
35599090 TGAACCACTG
* *
35599100 ACCTCTTTATCACACC-AGTGATGCC
1 ACCTCCTTACCACACCTA-TGATGCC
*
35599125 ACCTCCTTACCACACCTATGTTGCC
1 ACCTCCTTACCACACCTATGATGCC
35599150 ACCT
1 ACCT
35599154 TGCCACTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.22, C:0.41, G:0.09, T:0.28
Consensus pattern (25 bp):
ACCTCCTTACCACACCTATGATGCC
Found at i:35604064 original size:19 final size:20
Alignment explanation
Indices: 35604040--35604088 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
35604030 ATACGCCAAG
35604040 AGAAGCTC-AAAAGTTAAAC
1 AGAAGCTCGAAAAGTTAAAC
* *
35604059 AGAAGCTCGTAAGAGTTTAAC
1 AGAAGCTCG-AAAAGTTAAAC
35604080 AGAAGCTCG
1 AGAAGCTCG
35604089 TAAGAGCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 8 0.31
21 18 0.69
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.18
Consensus pattern (20 bp):
AGAAGCTCGAAAAGTTAAAC
Found at i:35604080 original size:21 final size:21
Alignment explanation
Indices: 35604051--35604094 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
35604041 GAAGCTCAAA
35604051 AGTTAAACAGAAGCTCGTAAG
1 AGTTAAACAGAAGCTCGTAAG
*
35604072 AGTTTAACAGAAGCTCGTAAG
1 AGTTAAACAGAAGCTCGTAAG
35604093 AG
1 AG
35604095 CTGAACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (21 bp):
AGTTAAACAGAAGCTCGTAAG
Found at i:35604101 original size:21 final size:21
Alignment explanation
Indices: 35604056--35604101 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
35604046 TCAAAAGTTA
* *
35604056 AACAGAAGCTCGTAAGAGTTT
1 AACAGAAGCTCGTAAGAGCTG
35604077 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
35604098 AACA
1 AACA
35604102 AAAAGTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:35606195 original size:5 final size:5
Alignment explanation
Indices: 35606156--35606226 Score: 87
Period size: 5 Copynumber: 14.6 Consensus size: 5
35606146 TTTTTATGTT
*
35606156 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA TTATA TTA-A TTATA
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
35606204 TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTA
35606227 AATAAACTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
3 1 0.02
4 12 0.21
5 41 0.71
7 4 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:35606202 original size:34 final size:36
Alignment explanation
Indices: 35606156--35606224 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
35606146 TTTTTATGTT
35606156 TTATATATATTAT-TT-TATTATATAATATAATATA
1 TTATATATATTATATTATATTATATAATATAATATA
* *
35606190 TTATAT-TAATTATATTATATTATATTATATTATAT
1 TTATATAT-ATTATATTATATTATATAATATAATAT
35606225 TAAATAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 11 0.37
35 2 0.07
36 16 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (36 bp):
TTATATATATTATATTATATTATATAATATAATATA
Found at i:35606225 original size:34 final size:30
Alignment explanation
Indices: 35606156--35606226 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
35606146 TTTTTATGTT
*
35606156 TTATA-TATATTATTTTATTATATAATATA
1 TTATATTATATTATTATATTATATAATATA
*
35606185 ATATATTATATTAATTATATTATAT--TATA
1 TTATATTATATT-ATTATATTATATAATATA
35606214 TTATATTATATTA
1 TTATATTATATTA
35606227 AATAAACTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 1 0.03
29 19 0.51
30 6 0.16
31 11 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TTATATTATATTATTATATTATATAATATA
Found at i:35607063 original size:5 final size:5
Alignment explanation
Indices: 35607024--35607094 Score: 87
Period size: 5 Copynumber: 14.6 Consensus size: 5
35607014 TTTTTATGTT
*
35607024 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA TTATA TTA-A TTATA
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
35607072 TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTA
35607095 AATAAACTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
3 1 0.02
4 12 0.21
5 41 0.71
7 4 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:35607070 original size:34 final size:36
Alignment explanation
Indices: 35607024--35607092 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
35607014 TTTTTATGTT
35607024 TTATATATATTAT-TT-TATTATATAATATAATATA
1 TTATATATATTATATTATATTATATAATATAATATA
* *
35607058 TTATAT-TAATTATATTATATTATATTATATTATAT
1 TTATATAT-ATTATATTATATTATATAATATAATAT
35607093 TAAATAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 11 0.37
35 2 0.07
36 16 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (36 bp):
TTATATATATTATATTATATTATATAATATAATATA
Found at i:35607093 original size:34 final size:30
Alignment explanation
Indices: 35607024--35607094 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
35607014 TTTTTATGTT
*
35607024 TTATA-TATATTATTTTATTATATAATATA
1 TTATATTATATTATTATATTATATAATATA
*
35607053 ATATATTATATTAATTATATTATAT--TATA
1 TTATATTATATT-ATTATATTATATAATATA
35607082 TTATATTATATTA
1 TTATATTATATTA
35607095 AATAAACTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 1 0.03
29 19 0.51
30 6 0.16
31 11 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TTATATTATATTATTATATTATATAATATA
Found at i:35607112 original size:868 final size:868
Alignment explanation
Indices: 35605432--35607172 Score: 3475
Period size: 868 Copynumber: 2.0 Consensus size: 868
35605422 ATATTTATGA
35605432 ACTTG-CTCGGCAAATTTGGTGGCCTCAAACCACTATTTTTGATACCACTAAAAAAGCGAGTTGT
1 ACTTGTCTCGGCAAATTTGGTGGCCTCAAACCACTATTTTTGATACCACTAAAAAAGCGAGTTGT
35605496 TACACCTTTTATTGCTCTTTTGCTAATAGCTCCTCAAGGTGGTCGTCCAAGAGATAATCTTATCA
66 TACACCTTTTATTGCTCTTTTGCTAATAGCTCCTCAAGGTGGTCGTCCAAGAGATAATCTTATCA
35605561 AGGTTTTTGGCTAAAAAAAATATGGGATGCTATGCGTGGAAATGAAGAGAGGAAATGAGAGAATG
131 AGGTTTTTGGCTAAAAAAAATATGGGATGCTATGCGTGGAAATGAAGAGAGGAAATGAGAGAATG
35605626 AATGATGATTGAGAGATGTGAAGAATGAGGGATGTAGGGATGAGGGATGATAAAAATAGAGAATG
196 AATGATGATTGAGAGATGTGAAGAATGAGGGATGTAGGGATGAGGGATGATAAAAATAGAGAATG
35605691 AGTAGAGGTATTTATACTTGAAGTAGATGGTAGAGTTTACTAAAAATAGGGATTGGAATCCATCA
261 AGTAGAGGTATTTATACTTGAAGTAGATGGTAGAGTTTACTAAAAATAGGGATTGGAATCCATCA
35605756 ATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTATTTGA
326 ATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTATTTGA
35605821 GCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCACAAG
391 GCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCACAAG
35605886 CATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTTGAAG
456 CATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTTGAAG
35605951 TAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAAGATA
521 TAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAAGATA
35606016 AATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAATAAA
586 AATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAATAAA
35606081 AAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCTTAGA
651 AAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCTTAGA
35606146 TTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTATATT
716 TTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTATATT
35606211 ATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAAGTGT
781 ATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAAGTGT
35606276 AATAGTAATAATTATATAGGTAC
846 AATAGTAATAATTATATAGGTAC
35606299 ACTTGTCTCGGCAAATTTGGTGGCCTCAAACCACTATTTTTGATACCACTAAAAAAGCGAGTTGT
1 ACTTGTCTCGGCAAATTTGGTGGCCTCAAACCACTATTTTTGATACCACTAAAAAAGCGAGTTGT
35606364 TACACCTTTTATTGCTCTTTTGCTAATAGCTCCTCAAGGTGGTCGTCCAAGAGATAATCTTATCA
66 TACACCTTTTATTGCTCTTTTGCTAATAGCTCCTCAAGGTGGTCGTCCAAGAGATAATCTTATCA
35606429 AGGTTTTTGGCTAAAAAAAATATGGGATGCTATGCGTGGAAATGAAGAGAGGAAATGAGAGAATG
131 AGGTTTTTGGCTAAAAAAAATATGGGATGCTATGCGTGGAAATGAAGAGAGGAAATGAGAGAATG
35606494 AATGATGATTGAGAGATGTGAAGAATGAGGGATGTAGGGATGAGGGATGATAAAAATAGAGAATG
196 AATGATGATTGAGAGATGTGAAGAATGAGGGATGTAGGGATGAGGGATGATAAAAATAGAGAATG
35606559 AGTAGAGGTATTTATACTTGAAGTAGATGGTAGAGTTTACTAAAAATAGGGATTGGAATCCATCA
261 AGTAGAGGTATTTATACTTGAAGTAGATGGTAGAGTTTACTAAAAATAGGGATTGGAATCCATCA
35606624 ATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTATTTGA
326 ATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTATTTGA
35606689 GCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCACAAG
391 GCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCACAAG
35606754 CATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTTGAAG
456 CATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTTGAAG
35606819 TAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAAGATA
521 TAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAAGATA
35606884 AATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAATAAA
586 AATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAATAAA
35606949 AAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCTTAGA
651 AAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCTTAGA
35607014 TTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTATATT
716 TTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTATATT
35607079 ATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAAGTGT
781 ATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAAGTGT
35607144 AATAGTAATAATTATATAGGTAC
846 AATAGTAATAATTATATAGGTAC
35607167 ACTTGT
1 ACTTGT
35607173 AATAAAAATA
Statistics
Matches: 873, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
867 5 0.01
868 868 0.99
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (868 bp):
ACTTGTCTCGGCAAATTTGGTGGCCTCAAACCACTATTTTTGATACCACTAAAAAAGCGAGTTGT
TACACCTTTTATTGCTCTTTTGCTAATAGCTCCTCAAGGTGGTCGTCCAAGAGATAATCTTATCA
AGGTTTTTGGCTAAAAAAAATATGGGATGCTATGCGTGGAAATGAAGAGAGGAAATGAGAGAATG
AATGATGATTGAGAGATGTGAAGAATGAGGGATGTAGGGATGAGGGATGATAAAAATAGAGAATG
AGTAGAGGTATTTATACTTGAAGTAGATGGTAGAGTTTACTAAAAATAGGGATTGGAATCCATCA
ATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTATTTGA
GCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCACAAG
CATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTTGAAG
TAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAAGATA
AATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAATAAA
AAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCTTAGA
TTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTATATT
ATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAAGTGT
AATAGTAATAATTATATAGGTAC
Found at i:35607835 original size:5 final size:5
Alignment explanation
Indices: 35607796--35607866 Score: 87
Period size: 5 Copynumber: 14.6 Consensus size: 5
35607786 TTTTTATGTT
*
35607796 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA TTATA TTA-A TTATA
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
35607844 TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTA
35607867 AATAAACTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
3 1 0.02
4 12 0.21
5 41 0.71
7 4 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:35607842 original size:34 final size:36
Alignment explanation
Indices: 35607796--35607864 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
35607786 TTTTTATGTT
35607796 TTATATATATTAT-TT-TATTATATAATATAATATA
1 TTATATATATTATATTATATTATATAATATAATATA
* *
35607830 TTATAT-TAATTATATTATATTATATTATATTATAT
1 TTATATAT-ATTATATTATATTATATAATATAATAT
35607865 TAAATAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 11 0.37
35 2 0.07
36 16 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (36 bp):
TTATATATATTATATTATATTATATAATATAATATA
Found at i:35607865 original size:34 final size:30
Alignment explanation
Indices: 35607796--35607866 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
35607786 TTTTTATGTT
*
35607796 TTATA-TATATTATTTTATTATATAATATA
1 TTATATTATATTATTATATTATATAATATA
*
35607825 ATATATTATATTAATTATATTATAT--TATA
1 TTATATTATATT-ATTATATTATATAATATA
35607854 TTATATTATATTA
1 TTATATTATATTA
35607867 AATAAACTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 1 0.03
29 19 0.51
30 6 0.16
31 11 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TTATATTATATTATTATATTATATAATATA
Found at i:35608102 original size:772 final size:772
Alignment explanation
Indices: 35606620--35608163 Score: 3088
Period size: 772 Copynumber: 2.0 Consensus size: 772
35606610 ATTGGAATCC
35606620 ATCAATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTAT
1 ATCAATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTAT
35606685 TTGAGCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCA
66 TTGAGCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCA
35606750 CAAGCATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTT
131 CAAGCATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTT
35606815 GAAGTAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAA
196 GAAGTAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAA
35606880 GATAAATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAA
261 GATAAATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAA
35606945 TAAAAAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCT
326 TAAAAAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCT
35607010 TAGATTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTA
391 TAGATTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTA
35607075 TATTATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAA
456 TATTATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAA
35607140 GTGTAATAGTAATAATTATATAGGTACACTTGTAATAAAAATAAATATATGCTTAAATAATAAGT
521 GTGTAATAGTAATAATTATATAGGTACACTTGTAATAAAAATAAATATATGCTTAAATAATAAGT
35607205 AAAATATTTTTTTATAATAATATATTATTAATATTATTAGTTAAAATAAAAGAAATAAAGTAAAG
586 AAAATATTTTTTTATAATAATATATTATTAATATTATTAGTTAAAATAAAAGAAATAAAGTAAAG
35607270 TAAGTAAAACAAAAGAAAAAGAAACAAAGGAAGAACAGAAAAGAAATAGAGAAAGAAACGAAAAC
651 TAAGTAAAACAAAAGAAAAAGAAACAAAGGAAGAACAGAAAAGAAATAGAGAAAGAAACGAAAAC
35607335 AAGGGAAGAAAAAGGGAAAGAAAAGAAAAGGGGAAAATTGAGATTTTAAAGCTTCAA
716 AAGGGAAGAAAAAGGGAAAGAAAAGAAAAGGGGAAAATTGAGATTTTAAAGCTTCAA
35607392 ATCAATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTAT
1 ATCAATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTAT
35607457 TTGAGCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCA
66 TTGAGCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCA
35607522 CAAGCATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTT
131 CAAGCATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTT
35607587 GAAGTAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAA
196 GAAGTAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAA
35607652 GATAAATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAA
261 GATAAATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAA
35607717 TAAAAAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCT
326 TAAAAAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCT
35607782 TAGATTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTA
391 TAGATTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTA
35607847 TATTATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAA
456 TATTATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAA
35607912 GTGTAATAGTAATAATTATATAGGTACACTTGTAATAAAAATAAATATATGCTTAAATAATAAGT
521 GTGTAATAGTAATAATTATATAGGTACACTTGTAATAAAAATAAATATATGCTTAAATAATAAGT
35607977 AAAATATTTTTTTATAATAATATATTATTAATATTATTAGTTAAAATAAAAGAAATAAAGTAAAG
586 AAAATATTTTTTTATAATAATATATTATTAATATTATTAGTTAAAATAAAAGAAATAAAGTAAAG
35608042 TAAGTAAAACAAAAGAAAAAGAAACAAAGGAAGAACAGAAAAGAAATAGAGAAAGAAACGAAAAC
651 TAAGTAAAACAAAAGAAAAAGAAACAAAGGAAGAACAGAAAAGAAATAGAGAAAGAAACGAAAAC
35608107 AAGGGAAGAAAAAGGGAAAGAAAAGAAAAGGGGAAAATTGAGATTTTAAAGCTTCAA
716 AAGGGAAGAAAAAGGGAAAGAAAAGAAAAGGGGAAAATTGAGATTTTAAAGCTTCAA
35608164 GTTTAATTGG
Statistics
Matches: 772, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
772 772 1.00
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.32
Consensus pattern (772 bp):
ATCAATTTTCTCCATTGCTTGGTCGGCCACATTTTGTGGAAGAAGGTGGATGATGGTTCCTTTAT
TTGAGCATAGAATCATGCTAAATTTAGGCATGGGTTAGACGGTTTCTGTAATAACCCAAAATTCA
CAAGCATTGGAAAAGTACATTATCGAGCCTTCGTCTTAGTAAACTGAGTCATAAAAAAATTATTT
GAAGTAATTATGAGTTTAGTTGAGTGCTTAATTAGGTATTAATTGGGTGAATTTAGTTTAATTAA
GATAAATTAGGAAAAAGGATTAAATTGAATTAGGGGTAAAAGTTGAATTATAGATTAATAGAAAA
TAAAAAGGATTAAAATGGAATTAAGCCATTAAAAAGAAATGAGGCAGCATAAGTGATAAAAATCT
TAGATTTTTATGTTTTATATATATTATTTTATTATATAATATAATATATTATATTAATTATATTA
TATTATATTATATTATATTAAATAAACTAAATAGATGACAAACGTATGGTAAAGATTAAAGACAA
GTGTAATAGTAATAATTATATAGGTACACTTGTAATAAAAATAAATATATGCTTAAATAATAAGT
AAAATATTTTTTTATAATAATATATTATTAATATTATTAGTTAAAATAAAAGAAATAAAGTAAAG
TAAGTAAAACAAAAGAAAAAGAAACAAAGGAAGAACAGAAAAGAAATAGAGAAAGAAACGAAAAC
AAGGGAAGAAAAAGGGAAAGAAAAGAAAAGGGGAAAATTGAGATTTTAAAGCTTCAA
Found at i:35608548 original size:17 final size:17
Alignment explanation
Indices: 35608526--35608575 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
35608516 TTTTTATGTT
*
35608526 TTATATATATTATTTTA
1 TTATATATATTATTATA
*
35608543 TTATATA-ATATAATATA
1 TTATATATAT-TATTATA
*
35608560 TTATATCTATTATTAT
1 TTATATATATTATTAT
35608576 TTTCATGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
16 2 0.07
17 23 0.85
18 2 0.07
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATATATATTATTATA
Found at i:35608793 original size:24 final size:23
Alignment explanation
Indices: 35608752--35608798 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
35608742 TATTCATGGG
35608752 ACATTTAAAGTAAGGTAAGTAATA
1 ACATTTAAAGTAAGGTAAG-AATA
*
35608776 ACATTTGAAATTAA-GTAAGAATA
1 ACATTT-AAAGTAAGGTAAGAATA
35608799 TGTGTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (23 bp):
ACATTTAAAGTAAGGTAAGAATA
Found at i:35609770 original size:9 final size:9
Alignment explanation
Indices: 35609756--35609783 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
35609746 GAATGTGAAA
35609756 TGAATTGGT
1 TGAATTGGT
35609765 TGAATTGGT
1 TGAATTGGT
35609774 TGAATTGGT
1 TGAATTGGT
35609783 T
1 T
35609784 ATGTTTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (9 bp):
TGAATTGGT
Found at i:35615148 original size:5 final size:5
Alignment explanation
Indices: 35615104--35615184 Score: 82
Period size: 5 Copynumber: 16.6 Consensus size: 5
35615094 ATTTTTATGT
*
35615104 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA TTATA TTATA TTA-A
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
*
35615152 TTATA GTATA TTATA TTATA TTAT- TATATA TTA
1 TTATA TTATA TTATA TTATA TTATA T-TATA TTA
35615185 AATAAACTAA
Statistics
Matches: 64, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
3 1 0.02
4 13 0.20
5 45 0.70
6 1 0.02
7 4 0.06
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:35615172 original size:34 final size:33
Alignment explanation
Indices: 35615104--35615180 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 33
35615094 ATTTTTATGT
*
35615104 TTATATATATTAT-TTTATTATATAATATAATA
1 TTATATATATTATATTAATTATATAATATAATA
*
35615136 -TAT-TATATTATATTAATTATAGT-ATATTATA
1 TTATATATATTATATTAATTATA-TAATATAATA
35615167 TTATAT-TATTATAT
1 TTATATATATTATAT
35615181 ATTAAATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
30 8 0.21
31 18 0.46
32 12 0.31
33 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (33 bp):
TTATATATATTATATTAATTATATAATATAATA
Found at i:35615182 original size:34 final size:33
Alignment explanation
Indices: 35615104--35615185 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 33
35615094 ATTTTTATGT
*
35615104 TTATATATATTATTTTATTATATAATATAATATA
1 TTATATATATTA-ATTATTATATAATATAATATA
* *
35615138 TTATATTATATTAATTA-TAGTATATTATATTATA
1 TTATA-TATATTAATTATTA-TATAATATAATATA
35615172 TTATTATATATTAA
1 TTA-TATATATTAA
35615186 ATAAACTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 2 0.05
34 31 0.74
35 9 0.21
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (33 bp):
TTATATATATTAATTATTATATAATATAATATA
Found at i:35615815 original size:23 final size:23
Alignment explanation
Indices: 35615781--35615824 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
35615771 TATGGCAAGA
35615781 AATTAATTAGAAAAG-AAGTATG
1 AATTAATTAGAAAAGTAAGTATG
35615803 AATTAAGTTAGAAAAGTAAGTA
1 AATTAA-TTAGAAAAGTAAGTA
35615825 AGCTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 9 0.45
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (23 bp):
AATTAATTAGAAAAGTAAGTATG
Found at i:35616101 original size:24 final size:23
Alignment explanation
Indices: 35616060--35616106 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
35616050 TATTCATGGG
35616060 ACATTTAAAGTAAGGTAAGTAATA
1 ACATTTAAAGTAAGGTAAG-AATA
*
35616084 ACATTTGAAATTAA-GTAAGAATA
1 ACATTT-AAAGTAAGGTAAGAATA
35616107 TGTGTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (23 bp):
ACATTTAAAGTAAGGTAAGAATA
Found at i:35616612 original size:4 final size:4
Alignment explanation
Indices: 35616593--35616634 Score: 66
Period size: 4 Copynumber: 10.2 Consensus size: 4
35616583 AATTGAATTA
*
35616593 GTAT GTAAT ATAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GT-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
35616635 AATTTAAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 32 0.91
5 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:35621792 original size:22 final size:21
Alignment explanation
Indices: 35621762--35621803 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
35621752 TTGAACTAAA
35621762 ATGGTAATTTCGTAAATATTG
1 ATGGTAATTTCGTAAATATTG
* *
35621783 ATGGTTAATTTTGTTAATATT
1 ATGG-TAATTTCGTAAATATT
35621804 TTATATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (21 bp):
ATGGTAATTTCGTAAATATTG
Found at i:35621964 original size:17 final size:18
Alignment explanation
Indices: 35621944--35621982 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
35621934 TTAAAATATT
35621944 TAATT-TAAAAAAATTAA
1 TAATTATAAAAAAATTAA
35621961 TAATTAAATAAAAAAATTAA
1 TAATT--ATAAAAAAATTAA
35621981 TA
1 TA
35621983 GTTAGACGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
20 14 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAATTATAAAAAAATTAA
Found at i:35624758 original size:153 final size:151
Alignment explanation
Indices: 35624485--35625581 Score: 1437
Period size: 153 Copynumber: 7.3 Consensus size: 151
35624475 GTTTTTATTG
* * *
35624485 AAAGTAATAAAATCCGGTAAAAAAATACGAATAAAGGGCCGAAAT-AAGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTT-AAATTTA
* *
35624549 TTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
65 TTTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
*
35624614 TTCGAAAATATTATATTTTTTA
130 TTAGAAAATATTATATTTTTTA
* * *
35624636 AAAGTAATAAAATCCGGAGAAAAAAATA-GAAACAAATGACCTAAATAATAG-TTTTTTTAAATT
1 AAAGTAATAAAATCCGG-GAAAAAAATACG-AACAAAGGGCCGAAATAA-AGATTTTTTTAAATT
*
35624699 TATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATATAAAAT-AT-
63 TATTT-AAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* *
35624762 AAA--A-ATAATA-TAT-TTTTATTG
127 AAATTAGAAAATATTATATTTT-TTA
* *
35624783 AAAGTAATAAAAT-CTGG-AAAAAATACGAATAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
* * *
35624846 TTAAAAACAC--TAAATGAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAATT
66 TTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
35624909 TAGAAAATA--ATATTTTTT-
131 TAGAAAATATTATATTTTTTA
* * ** *
35624927 TAAGTAATAAAATCCATGG-AAAAAATACGAACAAAGGGCCGAAATGAGGGTTTTTTTTAAATTT
1 AAAGTAATAAAATCC-GGGAAAAAAATACGAACAAAGGGCCGAAAT-AAAGATTTTTTTAAATTT
** *
35624991 ATTTTAAAAACACAGTAAATTAATACATTTCAAACATAACATACTAAAATAATGTAAAGTAATAA
64 A-TTTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
*
35625056 AATTATAAAATATTATATTTTTTA
128 AATTAGAAAATATTATATTTTTTA
*
35625080 AAAGTAATAAAATCCGGGGAAAAAATACGAACAAAGGGCCGAAATAATAG-TTTTTTTAAAATTT
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAA-AGATTTTTTT-AAATTT
*
35625144 ATTTAAAAAACACAGTAAATTAATACATTTAAAACATAATGTACTAAAATAATGTAAAATAATAA
64 ATTT-AAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
* *
35625209 AATTAGAAAATAGTATATTTTTTT
128 AATTAGAAAATATTATATTTTTTA
* * * *
35625233 AAAGTAATAAACTCTAGGGAAAAGAATACGAACAAAGGGCCGAAATAAGGATTTTTTTAAATTTA
1 AAAGTAATAAAATC-CGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTA
* * * * *
35625298 TTTAAAAAAACACTAAATTAATACATTTAAAATATAATGTATTAAAATAATGTAAAATAATAAAA
65 TTTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
* *
35625363 TTAGAAAATAATATATTTTTATTG
130 TTAGAAAATATTATA-TTTT-TTA
* *
35625387 AAAGTAATAAAATCCGGGGAAAAAATACTAACAAAGGGCCGAAATAAAGATTTTTTT-AATTTAT
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
* * * *
35625451 TTAAAAACACATTAAATTAATACATTTAAAATATAATGTATTAAAATAATGTAAAATAA-AAAAT
66 TTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
35625515 TAGAAAATATTATATTTTTTTA
131 TAGAAAATATTATA-TTTTTTA
* * * *
35625537 AAAGTAATAAAATCTGGG-AAAAAATACGAATAGAGGGCCAAAATA
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATA
35625582 CTAACAATTG
Statistics
Matches: 847, Mismatches: 68, Indels: 64
0.87 0.07 0.07
Matches are distributed among these distances:
141 44 0.05
142 2 0.00
143 12 0.01
144 51 0.06
145 8 0.01
146 43 0.05
147 34 0.04
148 16 0.02
149 23 0.03
150 74 0.09
151 44 0.05
152 191 0.23
153 251 0.30
154 54 0.06
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (151 bp):
AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
TTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
TAGAAAATATTATATTTTTTA
Found at i:35625019 original size:444 final size:452
Alignment explanation
Indices: 35624476--35625566 Score: 1588
Period size: 444 Copynumber: 2.4 Consensus size: 452
35624466 ATTTAGTGTG
*
35624476 TTTTTATTGAAAGTAATAAAATCCGGTAAAAAAATACGAATAAAGGGCCGAAATAAGGTTTTTTT
1 TTTTTATT-AAAGTAATAAAATCCGG--AAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTT
* *
35624541 AAAATTTATTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAA
63 TAAATTTATTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAA
*
35624606 TAATAAAATTCGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGAGAAAAAAATA-GAAACA
128 TAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGG-GAAAAAAATACG-AACA
* * *
35624670 AATGACCTAAATAATAGTTTTTTT-AAATTTATTTAAAAAACACAGTAAATTAATACATTTCAAA
191 AAGGACCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAA
*
35624734 CATAATGTACTAAAATAATATAAAAT-AT-AAA-A-ATAATA-TAT-TTTTATTGAAAGTAATAA
256 CATAATGTACTAAAATAATATAAAATAATAAAATAGAAAATAGTATATTTT-TTGAAAGTAATAA
*
35624793 AATCT-GGAAAA-AATACGAATAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTT-AAAAACA
320 AATCTAGGAAAAGAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTTAAAAAACA
* *
35624855 CTAAATGAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAATTTAGAAAAT-A-
385 CTAAATGAATACATTTAAAACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAAT
35624918 ATA
450 ATA
*
35624921 TTTTT-TT-AAGTAATAAAATCCATGGAAAAAATACGAACAAAGGGCCGAAATGAGGGTTTTTTT
1 TTTTTATTAAAGTAATAAAATCC--GGAAAAAATACGAACAAAGGGCCGAAAT-AAGGTTTTTTT
* **
35624984 TAAATTTATTTTAAAAACACAGTAAATTAATACATTTCAAACATAACATACTAAAATAATGTAAA
63 TAAATTTA-TTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
* * *
35625049 GTAATAAAATTATAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGGAAAAAATACGAACAA
127 ATAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAA
*
35625114 AGGGCCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAAC
192 AGGACCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAAC
* *
35625179 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAGTAATAAA
257 ATAATGTACTAAAATAATATAAAATAATAAAA-TAGAAAATAGTATATTTTTTGAAAGTAATAAA
* *
35625244 CTCTAGGGAAAAGAATACGAACAAAGGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAAAC
321 ATCTA-GGAAAAGAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTT-AAAAAAC
* * * *
35625309 ACTAAATTAATACATTTAAAATATAATGTATTAAAATAATGTAAAATAATAAAATTAGAAAATAA
384 ACTAAATGAATACATTTAAAACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAA
35625374 TATA
449 TATA
* * *
35625378 TTTTTATTGAAAGTAATAAAATCCGGGGAAAAAATACTAACAAAGGGCCGAAATAAAGATTTTTT
1 TTTTTATT-AAAGTAATAAAATCC--GGAAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTT
* * * *
35625443 T-AATTTATTTAAAAACACATTAAATTAATACATTTAAAATATAATGTATTAAAATAATGTAAAA
63 TAAATTTATTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAA
*
35625507 TAA-AAAATTAGAAAATATTATATTTTTTTAAAAGTAATAAAATCTGGG-AAAAAATACGAA
128 TAATAAAATTAGAAAATATTATA-TTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAA
35625567 TAGAGGGCCA
Statistics
Matches: 580, Mismatches: 42, Indels: 37
0.88 0.06 0.06
Matches are distributed among these distances:
442 39 0.07
443 51 0.09
444 166 0.29
445 7 0.01
446 3 0.01
448 1 0.00
449 5 0.01
450 19 0.03
451 4 0.01
452 6 0.01
453 42 0.07
455 63 0.11
456 31 0.05
457 85 0.15
458 8 0.01
459 9 0.02
460 41 0.07
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.32
Consensus pattern (452 bp):
TTTTTATTAAAGTAATAAAATCCGGAAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTTAA
ATTTATTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAA
TAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGA
CCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAACATAA
TGTACTAAAATAATATAAAATAATAAAATAGAAAATAGTATATTTTTTGAAAGTAATAAAATCTA
GGAAAAGAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTTAAAAAACACTAAAT
GAATACATTTAAAACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAATATA
Found at i:35627224 original size:21 final size:22
Alignment explanation
Indices: 35627198--35627239 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
35627188 GGAGTTTTTG
35627198 GAAAGGAAAA-GAGAAAGGAAA
1 GAAAGGAAAATGAGAAAGGAAA
*
35627219 GAAAGGAAAATGAGAAGGGAA
1 GAAAGGAAAATGAGAAAGGAA
35627240 GGGACTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (22 bp):
GAAAGGAAAATGAGAAAGGAAA
Found at i:35630986 original size:27 final size:27
Alignment explanation
Indices: 35630956--35631021 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
35630946 CTAGACTAAT
*
35630956 GTAAAATGACTGTTATGCCCCCACGTG
1 GTAAAATGACTGTTATACCCCCACGTG
* *
35630983 GTAAAATGACTGTTATACCCCTACGTT
1 GTAAAATGACTGTTATACCCCCACGTG
*
35631010 ATAAAATGACTG
1 GTAAAATGACTG
35631022 CATGCTCTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (27 bp):
GTAAAATGACTGTTATACCCCCACGTG
Found at i:35631339 original size:33 final size:31
Alignment explanation
Indices: 35631302--35631370 Score: 104
Period size: 33 Copynumber: 2.2 Consensus size: 31
35631292 TGTTACTGTC
35631302 ACTGTAATGGGCTAAGG-CCACACTGATACTGA
1 ACTGTAATGGGCTAAGGCCCA-ACTGA-ACTGA
35631334 TACTGTAATGGGCTAAGGCCCAACTGAACTGA
1 -ACTGTAATGGGCTAAGGCCCAACTGAACTGA
35631366 ACTGT
1 ACTGT
35631371 TATTGAATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
31 5 0.14
32 5 0.14
33 22 0.63
34 3 0.09
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (31 bp):
ACTGTAATGGGCTAAGGCCCAACTGAACTGA
Found at i:35637137 original size:26 final size:26
Alignment explanation
Indices: 35637107--35637165 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
35637097 ATGAAAGCTC
35637107 CCATTTTAGATACGCCACAAAGGCTT
1 CCATTTTAGATACGCCACAAAGGCTT
* * *
35637133 TCATTTCAGATACGGCACAAAGGCTT
1 CCATTTTAGATACGCCACAAAGGCTT
35637159 CCATTTT
1 CCATTTT
35637166 TTGACGTGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
CCATTTTAGATACGCCACAAAGGCTT
Found at i:35643487 original size:13 final size:13
Alignment explanation
Indices: 35643469--35643495 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35643459 GAAATATGCC
35643469 AAAATTGCTGGAA
1 AAAATTGCTGGAA
35643482 AAAATTGCTGGAA
1 AAAATTGCTGGAA
35643495 A
1 A
35643496 TTGCTAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22
Consensus pattern (13 bp):
AAAATTGCTGGAA
Found at i:35650952 original size:13 final size:13
Alignment explanation
Indices: 35650934--35650959 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35650924 TGTGAAGTGC
35650934 AAAAAAAATTCAA
1 AAAAAAAATTCAA
35650947 AAAAAAAATTCAA
1 AAAAAAAATTCAA
35650960 GTTGCATTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:35651022 original size:18 final size:18
Alignment explanation
Indices: 35650999--35651040 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
35650989 TGAAGTATTG
35650999 AAAAAAATGAAAATTCAA
1 AAAAAAATGAAAATTCAA
*
35651017 AAAAAAATGAAACTTCAA
1 AAAAAAATGAAAATTCAA
35651035 AAAAAA
1 AAAAAA
35651041 GTGTTGGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAAAAATGAAAATTCAA
Found at i:35655106 original size:27 final size:27
Alignment explanation
Indices: 35655072--35655125 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
35655062 ACTTTGCCAA
*
35655072 CTTCATCAACCAAGGGGGCTATGACTT
1 CTTCATCAACCAAGAGGGCTATGACTT
35655099 CTTCATCAACCAAGAGGGCTATGACTT
1 CTTCATCAACCAAGAGGGCTATGACTT
35655126 TGAAAGATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (27 bp):
CTTCATCAACCAAGAGGGCTATGACTT
Found at i:35657856 original size:20 final size:20
Alignment explanation
Indices: 35657831--35657887 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
35657821 ATGTAATAGT
* *
35657831 CTAAGACAGATTTAATTGAA
1 CTAAGACACATTAAATTGAA
*
35657851 CTAAGACACATTAAATTGGCAG
1 CTAAGACACATTAAATT-G-AA
35657873 C-AAGACACATTAAAT
1 CTAAGACACATTAAAT
35657888 GGATGTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.47
21 15 0.47
22 2 0.06
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.25
Consensus pattern (20 bp):
CTAAGACACATTAAATTGAA
Found at i:35671075 original size:20 final size:20
Alignment explanation
Indices: 35671018--35671065 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
35671008 TTTAGCTCGG
** *
35671018 TTCAGCTCCCATGAGTTTAA
1 TTCAGCTCAGATGAGCTTAA
*
35671038 TTCAGCTCAGATGTGCTTAA
1 TTCAGCTCAGATGAGCTTAA
35671058 TTCAGCTC
1 TTCAGCTC
35671066 GTTTGAGCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (20 bp):
TTCAGCTCAGATGAGCTTAA
Found at i:35673767 original size:18 final size:18
Alignment explanation
Indices: 35673744--35673801 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
35673734 TGGAGAAATG
* *
35673744 AAAGAAAAATACATTGAA
1 AAAGAAAAAGAAATTGAA
*
35673762 AAAGAAAAAGAAATTGCA
1 AAAGAAAAAGAAATTGAA
* *
35673780 AAAGAAAAGGGAATTGAA
1 AAAGAAAAAGAAATTGAA
35673798 AAAG
1 AAAG
35673802 TGAGTGAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.66, C:0.03, G:0.19, T:0.12
Consensus pattern (18 bp):
AAAGAAAAAGAAATTGAA
Found at i:35673800 original size:30 final size:29
Alignment explanation
Indices: 35673765--35673845 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
35673755 CATTGAAAAA
*
35673765 GAAAAAGAAATTGCAAAAG-AAAAGGGAATT
1 GAAAAAGAAATTG-AAAAGAAAAAGAG-ATT
** *
35673795 GAAAAAGTGAGTGAAAAGGAAAAAGAGATT
1 GAAAAAGAAATTGAAAA-GAAAAAGAGATT
35673825 GAAAAAGAAATTGAAAGAGAA
1 GAAAAAGAAATTGAAA-AGAA
35673846 GAAAAAGAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
29 4 0.10
30 30 0.73
31 7 0.17
ACGTcount: A:0.60, C:0.01, G:0.26, T:0.12
Consensus pattern (29 bp):
GAAAAAGAAATTGAAAAGAAAAAGAGATT
Found at i:35673816 original size:18 final size:18
Alignment explanation
Indices: 35673795--35673834 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
35673785 AAAGGGAATT
* *
35673795 GAAAAAGTGAGTGAAAAG
1 GAAAAAGAGAGTGAAAAA
*
35673813 GAAAAAGAGATTGAAAAA
1 GAAAAAGAGAGTGAAAAA
35673831 GAAA
1 GAAA
35673835 TTGAAAGAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.28, T:0.10
Consensus pattern (18 bp):
GAAAAAGAGAGTGAAAAA
Found at i:35686590 original size:39 final size:40
Alignment explanation
Indices: 35686490--35686674 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
35686480 TCGAATGATG
* * * *
35686490 TCCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
35686529 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
35686570 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
35686609 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
35686648 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
35686675 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 37 0.30
40 78 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:35686705 original size:79 final size:79
Alignment explanation
Indices: 35686542--35686707 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
35686532 CAGACTAAGA
* **
35686542 TCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
*
35686607 AATCCGGGCTAAGT
66 AATCCGGGCTAAAT
* * *
35686621 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
* *
35686684 CTATATCC-GGTTAAAT
63 CTAAATCCGGGCTAAAT
35686700 TCCGAAGG
1 TCCGAAGG
35686708 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
AATCCGGGCTAAAT
Found at i:35692583 original size:18 final size:20
Alignment explanation
Indices: 35692548--35692597 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
35692538 CCTGCCCACG
35692548 ACCCCTTGGCTGCAGCTGACC
1 ACCCCTTGGCTG-AGCTGACC
*
35692569 ACCCCTTGG-TG-GCTGAGC
1 ACCCCTTGGCTGAGCTGACC
35692587 ACCACCTTGGC
1 ACC-CCTTGGC
35692598 CTACAACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 9 0.35
19 6 0.23
20 2 0.08
21 9 0.35
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.20
Consensus pattern (20 bp):
ACCCCTTGGCTGAGCTGACC
Found at i:35694067 original size:17 final size:18
Alignment explanation
Indices: 35694045--35694078 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35694035 CACATTGAAG
35694045 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
35694062 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
35694079 CTTTCTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:35695222 original size:57 final size:58
Alignment explanation
Indices: 35695158--35695304 Score: 164
Period size: 57 Copynumber: 2.6 Consensus size: 58
35695148 TACATACATG
*
35695158 CATATGGCCCACTAGGCCCAA-TCTCA-TCTATATGGCCCATTCGGCCCAAT-TCATGTT
1 CATATGGCCCACTAGGCCCAATTCACATTC-ATATGGCCCATTCGGCCCAATCTCAT-TT
* * *
35695215 CATATGGCCCA-TCAGGCCCAATTCACATTCATATGGTCCATTGGGCCCAATCTTATTT
1 CATATGGCCCACT-AGGCCCAATTCACATTCATATGGCCCATTCGGCCCAATCTCATTT
*
35695273 -ATATGGCCCATCT-GGCCCAAATCACA-TCATAT
1 CATATGGCCCA-CTAGGCCCAATTCACATTCATAT
35695305 TCATGCTCAC
Statistics
Matches: 79, Mismatches: 5, Indels: 13
0.81 0.05 0.13
Matches are distributed among these distances:
56 7 0.09
57 41 0.52
58 25 0.32
59 6 0.08
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (58 bp):
CATATGGCCCACTAGGCCCAATTCACATTCATATGGCCCATTCGGCCCAATCTCATTT
Found at i:35695224 original size:29 final size:28
Alignment explanation
Indices: 35695158--35695292 Score: 125
Period size: 29 Copynumber: 4.7 Consensus size: 28
35695148 TACATACATG
* *
35695158 CATATGGCCCACTAGGCCCAATCTCATCT
1 CATATGGCCCA-TCGGCCCAATCTCATTT
35695187 -ATATGGCCCATTCGGCCCAAT-TCATGTT
1 CATATGGCCCA-TCGGCCCAATCTCAT-TT
*
35695215 CATATGGCCCATCAGGCCCAAT-TCACATT
1 CATATGGCCCATC-GGCCCAATCTCA-TTT
* * *
35695244 CATATGGTCCATTGGGCCCAATCTTATTT
1 CATATGGCCCA-TCGGCCCAATCTCATTT
35695273 -ATATGGCCCATCTGGCCCAA
1 CATATGGCCCATC-GGCCCAA
35695293 ATCACATCAT
Statistics
Matches: 89, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
27 5 0.06
28 38 0.43
29 43 0.48
30 3 0.03
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (28 bp):
CATATGGCCCATCGGCCCAATCTCATTT
Found at i:35695385 original size:17 final size:17
Alignment explanation
Indices: 35695363--35695415 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
35695353 TTGCCTAATA
35695363 TGGGCCCAATAGCCCAT
1 TGGGCCCAATAGCCCAT
* *
35695380 TGGGCCCAACAGCCCCT
1 TGGGCCCAATAGCCCAT
*
35695397 TGGGCCCATTTAGCCCAT
1 TGGGCCCA-ATAGCCCAT
35695415 T
1 T
35695416 CCTGCCCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 23 0.77
18 7 0.23
ACGTcount: A:0.19, C:0.38, G:0.23, T:0.21
Consensus pattern (17 bp):
TGGGCCCAATAGCCCAT
Found at i:35705247 original size:40 final size:40
Alignment explanation
Indices: 35705123--35705347 Score: 220
Period size: 40 Copynumber: 5.6 Consensus size: 40
35705113 TATTCGAATG
*
35705123 ATATCCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTA-GTGACT
* * * * * * *
35705164 ATAACCGGACTAAGATCCGAAGGCAATCGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
35705204 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
35705244 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * * * * *
35705284 ATATCCAGGCTATGTCCCGAAGGCATTTATGGTGGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
35705324 ACATCAGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
35705348 CTTGTGCAAG
Statistics
Matches: 148, Mismatches: 33, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
39 1 0.01
40 120 0.81
41 26 0.18
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:35715354 original size:231 final size:231
Alignment explanation
Indices: 35714942--35715400 Score: 697
Period size: 231 Copynumber: 2.0 Consensus size: 231
35714932 TCATATGCCA
* * *
35714942 ATCTACATATTTTTTTCTATAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTTAAATTCTC
1 ATCTACATATTTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTC
* * *
35715007 CCCTGTTACAGGGTGCGACTACACTGACCTTCATGCATTACGATTTGGATATCTCCCTGCACAGA
66 CCATGTTACAGGGTGCGACTACACTGACCTTCACGCATTACGACTTGGATATCTCCCTGCACAGA
* ** *
35715072 GCTTCAGTACTGATTCCGTTTGTTTATATAGAAACTAGACTCAGAGAGGAATCTATACATATATG
131 GCTTCAATACTGATGACGTTTGTTTATATAGAAACTACACTCAGAGAGGAATCTATACATATATG
35715137 GCATGACTCCTAATTATCTCTGGTTAATTTATACCC
196 GCATGACTCCTAATTATCTCTGGTTAATTTATACCC
*
35715173 ATCTACATATTTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTGCAGTTTATTAGTCAAAGTCTC
1 ATCTACATATTTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTC
* * ** * *
35715238 CCATGTTACAGGGAT-CGACTACCCTGGCCTTTGCGCATTACGACTTGGATATCTCCTTGTACAG
66 CCATGTTACAGGG-TGCGACTACACTGACCTTCACGCATTACGACTTGGATATCTCCCTGCACAG
* * *
35715302 GGC-TCTAATACTGATGACGTTTGTTTCTATAGAAACTACACTCAGGGAGGAATCTATACATATA
130 AGCTTC-AATACTGATGACGTTTGTTTATATAGAAACTACACTCAGAGAGGAATCTATACATATA
*
35715366 TGGTATGACTCCTAATTATCTCTGGTTAATTTATA
194 TGGCATGACTCCTAATTATCTCTGGTTAATTTATA
35715401 ATGAATTTCC
Statistics
Matches: 205, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
230 2 0.01
231 202 0.99
232 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (231 bp):
ATCTACATATTTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTC
CCATGTTACAGGGTGCGACTACACTGACCTTCACGCATTACGACTTGGATATCTCCCTGCACAGA
GCTTCAATACTGATGACGTTTGTTTATATAGAAACTACACTCAGAGAGGAATCTATACATATATG
GCATGACTCCTAATTATCTCTGGTTAATTTATACCC
Found at i:35726460 original size:16 final size:16
Alignment explanation
Indices: 35726439--35726470 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
35726429 CAAATCCGAG
35726439 ATCCCAATGGATTATA
1 ATCCCAATGGATTATA
35726455 ATCCCAATGGATTATA
1 ATCCCAATGGATTATA
35726471 GAACTTGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (16 bp):
ATCCCAATGGATTATA
Found at i:35727718 original size:47 final size:47
Alignment explanation
Indices: 35727660--35727755 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
35727650 TTTTTGTTGT
35727660 TTCCCTACATAAAAAGCCATGTTACCATCGTTTTAAATTTTATATTA
1 TTCCCTACATAAAAAGCCATGTTACCATCGTTTTAAATTTTATATTA
* * * *
35727707 TTCCCTACATAATAAGTCATGTTACCATCTTTTTAAATTTTATCTTA
1 TTCCCTACATAAAAAGCCATGTTACCATCGTTTTAAATTTTATATTA
35727754 TT
1 TT
35727756 TTTGCACCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.31, C:0.19, G:0.05, T:0.45
Consensus pattern (47 bp):
TTCCCTACATAAAAAGCCATGTTACCATCGTTTTAAATTTTATATTA
Found at i:35730112 original size:27 final size:27
Alignment explanation
Indices: 35730082--35730260 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
35730072 ATATTGAGCC
* * * *
35730082 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
35730109 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
35730136 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
35730164 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
35730191 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
35730218 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
35730245 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
35730261 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:35730221 original size:82 final size:81
Alignment explanation
Indices: 35730108--35730258 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
35730098 TATAATCATC
* *
35730108 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
35730173 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
35730190 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
35730254 AGTGC
65 AGTGC
35730259 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:35730824 original size:13 final size:13
Alignment explanation
Indices: 35730806--35730830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35730796 TACTAAATTT
35730806 TCATGGATTCAAG
1 TCATGGATTCAAG
35730819 TCATGGATTCAA
1 TCATGGATTCAA
35730831 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:35734437 original size:35 final size:35
Alignment explanation
Indices: 35734387--35734480 Score: 143
Period size: 35 Copynumber: 2.7 Consensus size: 35
35734377 GATAATCAAT
* *
35734387 TTCACATGTTAAGCATGCTACTATACTAATTTTGA
1 TTCACATGTTAAGCATGCCACTATACTAATTCTGA
* *
35734422 TTCGCATGTTAAGCATGCCAGTATACTAATTCTGA
1 TTCACATGTTAAGCATGCCACTATACTAATTCTGA
*
35734457 TTCACATGTAAAGCATGCCACTAT
1 TTCACATGTTAAGCATGCCACTAT
35734481 GTTAAATCGT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (35 bp):
TTCACATGTTAAGCATGCCACTATACTAATTCTGA
Found at i:35737361 original size:69 final size:69
Alignment explanation
Indices: 35737168--35737344 Score: 237
Period size: 69 Copynumber: 2.6 Consensus size: 69
35737158 AAATATAGAT
* * *
35737168 TGTAAGACCATAGCTCAGCTATGACAACCATTAGAGTCCGCCGGGACAATAAACACAGGGAATAT
1 TGTAAGACCATAGCTCAACTATGACAACCAATAGAGTCCGCTGGGACAATAAACACAGGGAATAT
35737233 AAGG
66 AAGG
* * * ** * *
35737237 TGTAAGACCATAGCTCAACTAAGAAAACCAATTGAGTTTGTTGGGACAATAAACACTGGGAATAT
1 TGTAAGACCATAGCTCAACTATGACAACCAATAGAGTCCGCTGGGACAATAAACACAGGGAATAT
35737302 AAGG
66 AAGG
* * *
35737306 TGTAAGACCATAGCTCAACTATGGCAACGAGTAGAGTCC
1 TGTAAGACCATAGCTCAACTATGACAACCAATAGAGTCC
35737345 ACTATGACGC
Statistics
Matches: 90, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
69 90 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (69 bp):
TGTAAGACCATAGCTCAACTATGACAACCAATAGAGTCCGCTGGGACAATAAACACAGGGAATAT
AAGG
Found at i:35745281 original size:19 final size:19
Alignment explanation
Indices: 35745257--35745298 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
35745247 ATAATTCTCG
* *
35745257 GTTTTGCGCTTTTAGTAGT
1 GTTTTGCGCTTCTAGCAGT
35745276 GTTTTGCGCTTCTAGCAGT
1 GTTTTGCGCTTCTAGCAGT
35745295 GTTT
1 GTTT
35745299 GCTGAGCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.14, G:0.26, T:0.50
Consensus pattern (19 bp):
GTTTTGCGCTTCTAGCAGT
Found at i:35749528 original size:49 final size:49
Alignment explanation
Indices: 35749337--35750572 Score: 2126
Period size: 49 Copynumber: 25.5 Consensus size: 49
35749327 ATTGTGATAA
* *
35749337 GGCCGATGTGATGAATGTGAAAGTGT--ATATATGTGATGAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
** *
35749384 GGCCGATGTGATGAATGTGAAAGTGT--ATATGCGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
* **
35749431 GGCTGATGTGATGAATGTGAAAGTGT--ATATGCGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
*
35749478 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749527 GGCCGATGTGATGAATGTGAAAGTGT--ATATATGTGATAAGGGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAA--GGCTTAAT
35749576 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749625 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749674 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749723 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749772 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749821 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749870 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749919 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35749968 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35750017 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35750066 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35750115 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35750164 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35750213 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
35750262 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
* * *
35750311 GGCCGATGTGATGAATGTGAAAGTGT--ATATGTGCGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
*
35750358 AGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
**
35750407 GGCCGATGTGATGAATGTGAAAGTGT--ATATGCGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
**
35750454 GGCCGATGTGATGAATGTGAAAGTGT--ATATGCGTGATAAGGCTTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
* * ** *
35750501 GGCCGATGTGATGAATGTGAAAGTGT--ATATATGTGACAGGGCCGAGT
1 GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
* *
35750548 GGCCAATGTGATGGATGTGAAAGTG
1 GGCCGATGTGATGAATGTGAAAGTG
35750573 CATAAATGTG
Statistics
Matches: 1154, Mismatches: 27, Indels: 16
0.96 0.02 0.01
Matches are distributed among these distances:
47 299 0.26
49 842 0.73
51 13 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (49 bp):
GGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCTTAAT
Found at i:35754700 original size:8 final size:8
Alignment explanation
Indices: 35754682--35754715 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
35754672 TAACCCAGAT
35754682 TTCTT-TG
1 TTCTTCTG
*
35754689 TTCTTATG
1 TTCTTCTG
35754697 TTCTTCTG
1 TTCTTCTG
35754705 TTCTTCTG
1 TTCTTCTG
35754713 TTC
1 TTC
35754716 AAATTGATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 5 0.20
8 20 0.80
ACGTcount: A:0.03, C:0.21, G:0.12, T:0.65
Consensus pattern (8 bp):
TTCTTCTG
Found at i:35757398 original size:13 final size:13
Alignment explanation
Indices: 35757380--35757406 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35757370 CTACTAATTA
35757380 TTTGTTACCTCAT
1 TTTGTTACCTCAT
35757393 TTTGTTACCTCAT
1 TTTGTTACCTCAT
35757406 T
1 T
35757407 CAACACACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.56
Consensus pattern (13 bp):
TTTGTTACCTCAT
Found at i:35761225 original size:79 final size:81
Alignment explanation
Indices: 35761089--35761273 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
35761079 TTGAATGATG
* *
35761089 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
35761153 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
35761168 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
35761230 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
35761248 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35761274 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:35761287 original size:40 final size:40
Alignment explanation
Indices: 35761090--35761273 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
35761080 TGAATGATGT
* * * *
35761090 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
35761130 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
35761170 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
35761208 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35761249 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
35761274 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:35761295 original size:79 final size:79
Alignment explanation
Indices: 35761142--35761306 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
35761132 GGACTAAGAT
* * **
35761142 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
35761207 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
35761221 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
35761284 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
35761300 CCGAAGG
1 CCGAAGG
35761307 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35768742 original size:40 final size:40
Alignment explanation
Indices: 35768503--35768728 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
35768493 TTGAATGATG
* * * * *
35768503 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
35768543 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
35768583 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
35768623 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
35768663 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
35768704 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
35768729 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 162 0.95
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35772015 original size:76 final size:76
Alignment explanation
Indices: 35771883--35772039 Score: 190
Period size: 76 Copynumber: 2.1 Consensus size: 76
35771873 TCTGTGTGCT
* * * * * *
35771883 AGGCCATATGCTAGGCCATGTAACTCACTGAGTTAAAAAACTAGGAAACTCCCAAATGACATACG
1 AGGCCATATCCTAGGCCATGTAACTCACAGACTTAAAAAACTAAGAAACTCCCAAATGAAACACG
*
35771948 GGCGTGTCGCC
66 GGCATGTCGCC
* * * * *
35771959 AGGCCATGTCCTA-GCCTATGTAACTCACAGACTTGAAACACTAAGAAACTCTCAAATGAAACAT
1 AGGCCATATCCTAGGCC-ATGTAACTCACAGACTTAAAAAACTAAGAAACTCCCAAATGAAACAC
35772023 GGGCATGTCGCC
65 GGGCATGTCGCC
35772035 AGGCC
1 AGGCC
35772040 GTGTGTATCA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
75 3 0.04
76 65 0.96
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (76 bp):
AGGCCATATCCTAGGCCATGTAACTCACAGACTTAAAAAACTAAGAAACTCCCAAATGAAACACG
GGCATGTCGCC
Found at i:35772539 original size:24 final size:24
Alignment explanation
Indices: 35772507--35772555 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
35772497 AAATAGACAT
*
35772507 CCATCTTAAGACATCCAAAACAAG
1 CCATATTAAGACATCCAAAACAAG
35772531 CCATATTAAGACATCCAAAACAAG
1 CCATATTAAGACATCCAAAACAAG
35772555 C
1 C
35772556 AAGAACAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.29, G:0.08, T:0.16
Consensus pattern (24 bp):
CCATATTAAGACATCCAAAACAAG
Found at i:35773372 original size:16 final size:17
Alignment explanation
Indices: 35773341--35773373 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
35773331 TTATTCAAAT
*
35773341 TTCATATTCATGTATCA
1 TTCATATTCATATATCA
35773358 TTCAT-TTCATATATCA
1 TTCATATTCATATATCA
35773374 ATATATCATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.30, C:0.18, G:0.03, T:0.48
Consensus pattern (17 bp):
TTCATATTCATATATCA
Found at i:35773380 original size:24 final size:22
Alignment explanation
Indices: 35773339--35773382 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
35773329 AATTATTCAA
*
35773339 ATTTCATATTCATGTATCATTC
1 ATTTCATATTCATATATCATTC
35773361 ATTTCATATATCAATATATCAT
1 ATTTCATAT-TC-ATATATCAT
35773383 GTAAAATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 2 0.11
24 8 0.42
ACGTcount: A:0.34, C:0.16, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTTCATATTCATATATCATTC
Found at i:35773604 original size:24 final size:25
Alignment explanation
Indices: 35773552--35773629 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
35773542 GTACATGTAT
* * *
35773552 GCTCATACGAGCTCTAAATTGGTAT
1 GCTCATACGAGCTGTAAATCGGTAA
*
35773577 GCTCTTACGAGCTGTAAA-CGGTAA
1 GCTCATACGAGCTGTAAATCGGTAA
35773601 GCTCATACGAGCTG-AATATCGGTAA
1 GCTCATACGAGCTGTAA-ATCGGTAA
35773626 GCTC
1 GCTC
35773630 TCTCAAGTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 2 0.04
24 18 0.39
25 26 0.57
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (25 bp):
GCTCATACGAGCTGTAAATCGGTAA
Found at i:35783484 original size:11 final size:10
Alignment explanation
Indices: 35783457--35783483 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
35783447 GTAGGTTCGT
35783457 AAAAAAATTC
1 AAAAAAATTC
35783467 AAAAAAATTC
1 AAAAAAATTC
35783477 AAAAAAA
1 AAAAAAA
35783484 AGAATAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:35784642 original size:36 final size:33
Alignment explanation
Indices: 35784578--35784658 Score: 81
Period size: 36 Copynumber: 2.3 Consensus size: 33
35784568 GAACAAAAAT
**
35784578 GTTAGAAAGAAGAGAAAATTGAAAAAGAAAATGA
1 GTTAGAAA-AAGAGAAAATAAAAAAAGAAAATGA
*
35784612 GTTAGAAAAAGAAGCAAAATAAAAAGAAGAAAGTGA
1 GTTAGAAAAAG-AG-AAAATAAAAA-AAGAAAATGA
**
35784648 GCGAGAAAAAG
1 GTTAGAAAAAG
35784659 CGAGAAATGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
33 3 0.08
34 10 0.26
35 8 0.21
36 18 0.46
ACGTcount: A:0.62, C:0.02, G:0.25, T:0.11
Consensus pattern (33 bp):
GTTAGAAAAAGAGAAAATAAAAAAAGAAAATGA
Found at i:35808750 original size:21 final size:22
Alignment explanation
Indices: 35808700--35808750 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
35808690 AATATACAAG
* *
35808700 TAAAAT-AATAATAGTATAATA
1 TAAAATAAATAATAGTAAAACA
**
35808721 TAATGTAAATAATA-TAAAACA
1 TAAAATAAATAATAGTAAAACA
35808742 TAAAATAAA
1 TAAAATAAA
35808751 CAAAGCCATG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (22 bp):
TAAAATAAATAATAGTAAAACA
Found at i:35809584 original size:28 final size:28
Alignment explanation
Indices: 35809544--35809697 Score: 227
Period size: 28 Copynumber: 5.5 Consensus size: 28
35809534 TGACTTTCGA
*
35809544 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
35809572 CACTAAGTGTGCGAGTTTAATTGTAAAT
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
35809600 CACTAAGTGCGCGAGTTTAATTGTAAAT
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
35809628 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * **
35809656 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
35809684 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
35809698 ACTTATTAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 115 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:35810475 original size:47 final size:47
Alignment explanation
Indices: 35810424--35810823 Score: 387
Period size: 47 Copynumber: 8.6 Consensus size: 47
35810414 TTTTATGCTA
* * *
35810424 AAATGCTG-CTCAAATTGGTATATATATGCTACCCAATTTTGGTGAAT
1 AAATGCTGTC-CAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
** * ** *
35810471 AAATGCAATCCAATTTTGTATATACGTGCTGTCAAATTTT-GTGTAA-
1 AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTG-AAT
* * * *
35810517 AAGTGTTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAAT
1 AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
* * ** * *
35810564 AAATGTTGTCCAATTTTGTATATGCATGCTGTCAAATTTT-GTGTAT
1 AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
* * * * * *
35810610 AAGTGCTATCCAAATTGGTATATATCTGCTGCCCAATTTTGGTGAGT
1 AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
* * * *
35810657 AAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTT-GTGCAT
1 AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
* * * *
35810703 AAGTGCTGTCCAAATTGGTATTTATATGCTGCCCAATTTTGGTGAAT
1 AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
* * * * *
35810750 AAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGATGTAT
1 AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
* *
35810797 AAATGTTGTCCAACTTTGTATATATAT
1 AAATGCTGTCCAAATTTGTATATATAT
35810824 ATGCTGCTCA
Statistics
Matches: 278, Mismatches: 69, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
46 107 0.38
47 170 0.61
48 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (47 bp):
AAATGCTGTCCAAATTTGTATATATATGCTGCCAAATTTTGGTGAAT
Found at i:35810554 original size:93 final size:93
Alignment explanation
Indices: 35810422--35810837 Score: 604
Period size: 93 Copynumber: 4.5 Consensus size: 93
35810412 ATTTTTATGC
* **
35810422 TAAAA-TGCTG-CTCAAATTGGTATATATATGCTACCCAATTTTGGTGAATAAATGCAATCCAAT
1 TAAAAGTGCTGTC-CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAAT
*
35810485 TTTGTATATACGTGCTGTCAAATTTTGTG
65 TTTGTATATACATGCTGTCAAATTTTGTG
* *
35810514 TAAAAGTGTTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATT
1 TAAAAGTGCTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATT
*
35810579 TTGTATATGCATGCTGTCAAATTTTGTG
66 TTGTATATACATGCTGTCAAATTTTGTG
* * * *
35810607 TATAAGTGCTATCCAAATTGGTATATATCTGCTGCCCAATTTTGGTGAGTAAATGCTGTCCAATT
1 TAAAAGTGCTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATT
35810672 TTGTATATACATGCTGTCAAATTTTGTG
66 TTGTATATACATGCTGTCAAATTTTGTG
* * *
35810700 CATAAGTGCTGTCCAAATTGGTATTTATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATT
1 TAAAAGTGCTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATT
35810765 TTGTATATACATGCTGTCAAATTTTGATG
66 TTGTATATACATGCTGTCAAATTTTG-TG
* * * *
35810794 TATAAA-TGTTGTCCAACTTTGTATATATATATGCTGCTCAATTT
1 TA-AAAGTGCTGTCCAA-ATTG-GTATATATATGCTGCCCAATTT
35810838 CTGATGTATA
Statistics
Matches: 292, Mismatches: 26, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
92 5 0.02
93 250 0.86
94 13 0.04
95 5 0.02
96 19 0.07
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (93 bp):
TAAAAGTGCTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATT
TTGTATATACATGCTGTCAAATTTTGTG
Found at i:35810806 original size:24 final size:24
Alignment explanation
Indices: 35810456--35810848 Score: 202
Period size: 23 Copynumber: 16.7 Consensus size: 24
35810446 TATATGCTAC
* * **
35810456 CCAATTTTGGTGAATAAATGCAAT
1 CCAATTTTGATGTATAAATGCTGT
* **
35810480 CCAATTTTG-TATATACGTGCTGT
1 CCAATTTTGATGTATAAATGCTGT
* *
35810503 CAAATTTTG-TGTA-AAAGTGTTGT
1 CCAATTTTGATGTATAAA-TGCTGT
* * * * *
35810526 CCAA-ATTGGTATATATATGCTGC
1 CCAATTTTGATGTATAAATGCTGT
* * *
35810549 CCAATTTTGGTGAATAAATGTTGT
1 CCAATTTTGATGTATAAATGCTGT
* **
35810573 CCAATTTTG-TATATGCATGCTGT
1 CCAATTTTGATGTATAAATGCTGT
* * *
35810596 CAAATTTTG-TGTATAAGTGCTAT
1 CCAATTTTGATGTATAAATGCTGT
* * * ** *
35810619 CCAA-ATTGGTATATATCTGCTGC
1 CCAATTTTGATGTATAAATGCTGT
*
35810642 CCAATTTTGGTG-AGTAAATGCTGT
1 CCAATTTTGATGTA-TAAATGCTGT
* *
35810666 CCAATTTTG-TATATACATGCTGT
1 CCAATTTTGATGTATAAATGCTGT
* * *
35810689 CAAATTTTG-TGCATAAGTGCTGT
1 CCAATTTTGATGTATAAATGCTGT
* * * *
35810712 CCAAATTGGTAT-T-TATATGCTGC
1 CCAATTTTG-ATGTATAAATGCTGT
* *
35810735 CCAATTTTGGTGAATAAATGCTGT
1 CCAATTTTGATGTATAAATGCTGT
* *
35810759 CCAATTTTG-TATATACATGCTGT
1 CCAATTTTGATGTATAAATGCTGT
* *
35810782 CAAATTTTGATGTATAAATGTTGT
1 CCAATTTTGATGTATAAATGCTGT
* * *
35810806 CCAACTTTGTATATATATATGCTG-
1 CCAATTTTG-ATGTATAAATGCTGT
35810830 CTCAATTTCTGATGTATAA
1 C-CAATTT-TGATGTATAA
35810849 GAGCTGTTCA
Statistics
Matches: 272, Mismatches: 81, Indels: 31
0.71 0.21 0.08
Matches are distributed among these distances:
22 8 0.03
23 148 0.54
24 91 0.33
25 23 0.08
26 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (24 bp):
CCAATTTTGATGTATAAATGCTGT
Found at i:35812371 original size:237 final size:237
Alignment explanation
Indices: 35811979--35812464 Score: 963
Period size: 237 Copynumber: 2.1 Consensus size: 237
35811969 CTACTATCAG
35811979 TTGCGAGTTAAAGACTCTGATGTGCCAAAGATTGCTTTATGAATGAGGTACAGACATTATGAGTT
1 TTGCGAGTTAAAGACTCTGATGTGCCAAAGATTGCTTTATGAATGAGGTACAGACATTATGAGTT
35812044 TCTAGTTATGCCTTTCGGACTTACTAATGCACCTGCTATTTTCATGGACTTAATGAATTGGATCT
66 TCTAGTTATGCCTTTCGGACTTACTAATGCACCTGCTATTTTCATGGACTTAATGAATTGGATCT
35812109 TTAGACAGTATCTGGATCGATTTGTGGTAGTATTTATAGATGACATTTTGATCTACTCTCGTGAC
131 TTAGACAGTATCTGGATCGATTTGTGGTAGTATTTATAGATGACATTTTGATCTACTCTCGTGAC
35812174 GAAACTGAGCATGTCGAACATCTGAGACTTGTGTTACAAACT
196 GAAACTGAGCATGTCGAACATCTGAGACTTGTGTTACAAACT
35812216 TTGCGAGTTAAAGACTCTGATGTGCCAAAGATTGCTTTATGAATGAGGTACAGACATTATGAGTT
1 TTGCGAGTTAAAGACTCTGATGTGCCAAAGATTGCTTTATGAATGAGGTACAGACATTATGAGTT
35812281 TCTAGTTATGCCTTTCGGACTTACTAATGCACCTGCTATTTTCATGGACTTAATGAATTGGATCT
66 TCTAGTTATGCCTTTCGGACTTACTAATGCACCTGCTATTTTCATGGACTTAATGAATTGGATCT
35812346 TTAGACAGTATCTGGATCGATTTGTGGTAGTATTTATAGATGACATTTTGATCTACTCTCGTGAC
131 TTAGACAGTATCTGGATCGATTTGTGGTAGTATTTATAGATGACATTTTGATCTACTCTCGTGAC
35812411 GAAACTGAGCATGTCGAACATCTGAGACTTGTGTTACAAACT
196 GAAACTGAGCATGTCGAACATCTGAGACTTGTGTTACAAACT
*
35812453 TTGCGAGATAAA
1 TTGCGAGTTAAA
35812465 CAGTTGTATG
Statistics
Matches: 248, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
237 248 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (237 bp):
TTGCGAGTTAAAGACTCTGATGTGCCAAAGATTGCTTTATGAATGAGGTACAGACATTATGAGTT
TCTAGTTATGCCTTTCGGACTTACTAATGCACCTGCTATTTTCATGGACTTAATGAATTGGATCT
TTAGACAGTATCTGGATCGATTTGTGGTAGTATTTATAGATGACATTTTGATCTACTCTCGTGAC
GAAACTGAGCATGTCGAACATCTGAGACTTGTGTTACAAACT
Found at i:35816481 original size:29 final size:29
Alignment explanation
Indices: 35816418--35816485 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
35816408 TAATCAACCG
*
35816418 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
35816447 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
35816476 CGCACACTTA
1 CGCACACTTA
35816486 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:35816598 original size:174 final size:174
Alignment explanation
Indices: 35816307--35816634 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
35816297 AACTCAAGGT
* * *
35816307 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
35816372 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
35816437 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
35816481 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
35816546 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
35816611 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
35816635 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:35816626 original size:29 final size:30
Alignment explanation
Indices: 35816587--35816665 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
35816577 CTTAATAATC
35816587 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
35816617 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
35816646 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
35816666 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:35822944 original size:22 final size:23
Alignment explanation
Indices: 35822928--35822972 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
35822918 AATTCATGCC
35822928 ACAAAATATACCAATTCATCATCA
1 ACAAAATATACCAATTCATCA-CA
*
35822952 ACAAAATGTACCAATTCATCA
1 ACAAAATATACCAATTCATCA
35822973 ACCTTATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (23 bp):
ACAAAATATACCAATTCATCACA
Found at i:35822972 original size:21 final size:21
Alignment explanation
Indices: 35822918--35822974 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
35822908 ATTATCATAT
*
35822918 AATTCATGCCACAAAATATACC
1 AATTCAT-CAACAAAATATACC
*
35822940 AATTCATCATCAACAAAATGTACC
1 AA-T--TCATCAACAAAATATACC
35822964 AATTCATCAAC
1 AATTCATCAAC
35822975 CTTATACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 8 0.27
22 2 0.07
23 2 0.07
24 14 0.47
25 4 0.13
ACGTcount: A:0.46, C:0.26, G:0.04, T:0.25
Consensus pattern (21 bp):
AATTCATCAACAAAATATACC
Found at i:35823915 original size:42 final size:42
Alignment explanation
Indices: 35823883--35823986 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
35823873 TAGCTTAGCT
35823883 ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
* * *
35823925 ATGGTCTTACACGAATCTCATATCGATGCAAATGTCCCAGTC
1 ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
*
35823967 ATGGTCTTACATGAATCTCA
1 ATGGTCTTACACGAATCTCA
35823987 CATCCCGATA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
Found at i:35826802 original size:29 final size:29
Alignment explanation
Indices: 35826739--35826806 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
35826729 TAATCACCCA
* *
35826739 CGCACACTCAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
35826768 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
35826797 CGCACACTTA
1 CGCACACTTA
35826807 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:35826948 original size:29 final size:30
Alignment explanation
Indices: 35826909--35826987 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
35826899 CTTAATAATC
35826909 AACCGCGCACACTTAGTGCCATGTAC-TGTA
1 AACC-CGCACACTTAGTGCCATGTACATGTA
* *
35826939 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATGTA
35826968 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
35826988 ATCTCATGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 32 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATGTA
Found at i:35829483 original size:28 final size:28
Alignment explanation
Indices: 35829438--35829562 Score: 178
Period size: 28 Copynumber: 4.5 Consensus size: 28
35829428 GACTTTCGAT
* *
35829438 ACTAAGTGTGCAAATTTAATTGTAAAGC
1 ACTAAGTGTGCGAGTTTAATTGTAAAGC
35829466 ACTAAGTGTGCGAGTTTAATTGTAAAGC
1 ACTAAGTGTGCGAGTTTAATTGTAAAGC
* *
35829494 ACTAAGTTTGCGAGTTTAATGGTAAAGC
1 ACTAAGTGTGCGAGTTTAATTGTAAAGC
* * **
35829522 ACTAAGTGTGCGAGTTTGATTATTGAGC
1 ACTAAGTGTGCGAGTTTAATTGTAAAGC
35829550 ACTAAGTGTGCGA
1 ACTAAGTGTGCGA
35829563 ACTTTTTAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTAATTGTAAAGC
Found at i:35830315 original size:23 final size:22
Alignment explanation
Indices: 35830289--35830686 Score: 130
Period size: 23 Copynumber: 17.1 Consensus size: 22
35830279 TTATGCTAAA
35830289 ATGCTGCTCAAATTGGTATATAT
1 ATGCTG-TCAAATTGGTATATAT
** * *
35830312 ATGCTACCCAATTTTGGTGA-ATAA
1 ATGCT-GTCAA-ATTGGT-ATATAT
* * * *
35830336 ATGTTGTCCAATTTTGTATATAC
1 ATGCTGT-CAAATTGGTATATAT
*
35830359 GTGCTGTCAAATTGTGTATA-A-
1 ATGCTGTCAAATTG-GTATATAT
*
35830380 GTGCTGTCCAAATTGGTATATAT
1 ATGCTGT-CAAATTGGTATATAT
* * *
35830403 ATGCTGCCCAATCTTGGTGA-ATAA
1 ATGCTG-TCAA-ATTGGT-ATATAT
* * **
35830427 ATGCTGTCCAATTTTGTATATGC
1 ATGCTGT-CAAATTGGTATATAT
* *
35830450 ATGCTGTCAAATTTTGTGTATA-
1 ATGCTGTCAAA-TTGGTATATAT
35830472 AGTGCTGTCCAAATTGGTATATAT
1 A-TGCTGT-CAAATTGGTATATAT
* * *
35830496 ATGCTGCCCAATTTTGGTGA-ATAA
1 ATGCTG-TCAA-ATTGGT-ATATAT
* * **
35830520 ATGCTGTCCAATTTTGTATATGC
1 ATGCTGT-CAAATTGGTATATAT
* *
35830543 ATGCTGTCAAATTTTGTGTATA-
1 ATGCTGTCAAA-TTGGTATATAT
35830565 AGTGCTGTCCAAATTGGTATATAT
1 A-TGCTGT-CAAATTGGTATATAT
* * *
35830589 ATGCTGCCCAATTTTGGTGA-ATAA
1 ATGCTG-TCAA-ATTGGT-ATATAT
* *
35830613 ATGCTGTCCAATTTTGG-ATATAC
1 ATGCTGT-CAA-ATTGGTATATAT
* *
35830636 ATGCTGTCAAATTTTGGTGTATAA
1 ATGCTGTCAAA--TTGGTATATAT
*
35830660 ATGCTGTCCAATTTTGGTTATATAT
1 ATGCTGT-CAA-ATTGG-TATATAT
35830685 AT
1 AT
35830687 ATGCGGCTCA
Statistics
Matches: 287, Mismatches: 50, Indels: 74
0.70 0.12 0.18
Matches are distributed among these distances:
21 12 0.04
22 29 0.10
23 135 0.47
24 97 0.34
25 14 0.05
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (22 bp):
ATGCTGTCAAATTGGTATATAT
Found at i:35830338 original size:47 final size:47
Alignment explanation
Indices: 35830287--35830670 Score: 413
Period size: 47 Copynumber: 8.3 Consensus size: 47
35830277 TTTTATGCTA
* *
35830287 AAATGCTG-CTCAAATTGGTATATATATGCTACCCAATTTTGGTGAAT
1 AAATGCTGTC-CAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
* * * * * * *
35830334 AAATGTTGTCCAATTTTGTATATACGTGCTG-TCAA-ATT-GTGTAT
1 AAATGCTGTCCAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
* * *
35830378 AAGTGCTGTCCAAATTGGTATATATATGCTGCCCAATCTTGGTGAAT
1 AAATGCTGTCCAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
* * * * * *
35830425 AAATGCTGTCCAATTTTGTATATGCATGCTGTCAAATTTT-GTGTAT
1 AAATGCTGTCCAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
* *
35830471 AAGTGCTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAAT
1 AAATGCTGTCCAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
* * * * * *
35830518 AAATGCTGTCCAATTTTGTATATGCATGCTGTCAAATTTT-GTGTAT
1 AAATGCTGTCCAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
* *
35830564 AAGTGCTGTCCAAATTGGTATATATATGCTGCCCAATTTTGGTGAAT
1 AAATGCTGTCCAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
* * * *
35830611 AAATGCTGTCCAATTTTGG-ATATACATGCTGTCAAATTTTGGTGTAT
1 AAATGCTGTCCAA-ATTGGTATATACATGCTGCCCAATTTTGGTGAAT
35830658 AAATGCTGTCCAA
1 AAATGCTGTCCAA
35830671 TTTTGGTTAT
Statistics
Matches: 273, Mismatches: 57, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
44 30 0.11
45 5 0.02
46 81 0.30
47 152 0.56
48 5 0.02
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (47 bp):
AAATGCTGTCCAAATTGGTATATACATGCTGCCCAATTTTGGTGAAT
Found at i:35830378 original size:21 final size:22
Alignment explanation
Indices: 35830340--35830585 Score: 132
Period size: 23 Copynumber: 10.8 Consensus size: 22
35830330 GAATAAATGT
*
35830340 TGTCC-AATTTTGTATATACGTGC
1 TGTCCAAATTGTGTATA-A-GTGC
35830363 TGT-CAAATTGTGTATAAGTGC
1 TGTCCAAATTGTGTATAAGTGC
*
35830384 TGTCCAAATTG-GTATATATATGC
1 TGTCCAAATTGTGTATA-A-GTGC
* * * *
35830407 TGCCCAATCTTGGTGAATAAATGC
1 TGTCCAA-ATT-GTGTATAAGTGC
* *
35830431 TGTCC-AATTTTGTATATGCATGC
1 TGTCCAAATTGTGTATAAG--TGC
35830454 TGT-CAAATTTTGTGTATAAGTGC
1 TGTCCAAA--TTGTGTATAAGTGC
*
35830477 TGTCCAAATTG-GTATATATATGC
1 TGTCCAAATTGTGTATA-A-GTGC
* * * *
35830500 TGCCCAATTTTGGTGAATAAATGC
1 TGTCCAA-ATT-GTGTATAAGTGC
* *
35830524 TGTCC-AATTTTGTATATGCATGC
1 TGTCCAAATTGTGTATAAG--TGC
35830547 TGT-CAAATTTTGTGTATAAGTGC
1 TGTCCAAA--TTGTGTATAAGTGC
35830570 TGTCCAAATTG-GTATA
1 TGTCCAAATTGTGTATA
35830586 TATATGCTGC
Statistics
Matches: 174, Mismatches: 25, Indels: 50
0.70 0.10 0.20
Matches are distributed among these distances:
21 32 0.18
22 23 0.13
23 61 0.35
24 28 0.16
25 22 0.13
26 8 0.05
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (22 bp):
TGTCCAAATTGTGTATAAGTGC
Found at i:35830490 original size:93 final size:93
Alignment explanation
Indices: 35830297--35830686 Score: 658
Period size: 93 Copynumber: 4.2 Consensus size: 93
35830287 AAATGCTGCT
* * *
35830297 CAAATTGGTATATATATGCTACCCAATTTTGGTGAATAAATGTTGTCCAATTTTGTATATACGTG
1 CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATG
35830362 CTGTCAAA--TTGTGTATAAGTGCTGTC
66 CTGTCAAATTTTGTGTATAAGTGCTGTC
* *
35830388 CAAATTGGTATATATATGCTGCCCAATCTTGGTGAATAAATGCTGTCCAATTTTGTATATGCATG
1 CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATG
35830453 CTGTCAAATTTTGTGTATAAGTGCTGTC
66 CTGTCAAATTTTGTGTATAAGTGCTGTC
*
35830481 CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATGCATG
1 CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATG
35830546 CTGTCAAATTTTGTGTATAAGTGCTGTC
66 CTGTCAAATTTTGTGTATAAGTGCTGTC
*
35830574 CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGGATATACATG
1 CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATG
*
35830639 CTGTCAAATTTTGGTGTATAAATGCTGTC
66 CTGTCAAATTTT-GTGTATAAGTGCTGTC
*
35830668 CAATTTTGGTTATATATAT
1 CAA-ATTGG-TATATATAT
35830687 ATGCGGCTCA
Statistics
Matches: 284, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
91 68 0.24
93 185 0.65
94 18 0.06
95 4 0.01
96 9 0.03
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (93 bp):
CAAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATG
CTGTCAAATTTTGTGTATAAGTGCTGTC
Found at i:35837672 original size:859 final size:859
Alignment explanation
Indices: 35836014--35837730 Score: 3407
Period size: 859 Copynumber: 2.0 Consensus size: 859
35836004 AAAGAACTGG
35836014 AAATATATCAAGGACGAATGAGATGCCCTTAAAAAATATTTTGGAGATTGAATTATTCGATGTAT
1 AAATATATCAAGGACGAATGAGATGCCCTTAAAAAATATTTTGGAGATTGAATTATTCGATGTAT
35836079 GGGGCATTGACTTCTTAGGCCTGTTTCCTTCTTCGTATGGGAAAAAATACATCTTAGTTGCTGTG
66 GGGGCATTGACTTCTTAGGCCTGTTTCCTTCTTCGTATGGGAAAAAATACATCTTAGTTGCTGTG
35836144 GACTATGTATCCAAGTGGGTTGAAGCTGAAGCATACCCTACAAATGATGCTAAGGTAGTCATGCG
131 GACTATGTATCCAAGTGGGTTGAAGCTGAAGCATACCCTACAAATGATGCTAAGGTAGTCATGCG
35836209 ATTTTTACATAAACATGTGTTTACACGATTTGGGACACCAAGAGCTATTATTAATGATGAAGGGT
196 ATTTTTACATAAACATGTGTTTACACGATTTGGGACACCAAGAGCTATTATTAATGATGAAGGGT
35836274 CTAACTTTGTGAACAAATGACTTAAGTGGTTGCTTGAAAAATATGATGTAAGGCACAATATTGCT
261 CTAACTTTGTGAACAAATGACTTAAGTGGTTGCTTGAAAAATATGATGTAAGGCACAATATTGCT
35836339 ACTGGTTATCACCCCCAATCCAATGGGCAAGTTGAAAGAGTGAACCGTGAAATCAAAGGTATCCT
326 ACTGGTTATCACCCCCAATCCAATGGGCAAGTTGAAAGAGTGAACCGTGAAATCAAAGGTATCCT
35836404 TAAAAAAATAGTACGCCCTAGCAGAAAAGATTGGACTCGAAGGCTCGAAGATGCATTATGGGCCT
391 TAAAAAAATAGTACGCCCTAGCAGAAAAGATTGGACTCGAAGGCTCGAAGATGCATTATGGGCCT
*
35836469 ATCAAACAGCATTTAAGACTCCATTAGGGACTCCTTATCGGTTAGTCTTTGGAAAGGCATGTCAT
456 ATCAAACAACATTTAAGACTCCATTAGGGACTCCTTATCGGTTAGTCTTTGGAAAGGCATGTCAT
35836534 TTGCCATTAGAATTGGAGAATAAAGCTCACTGGGCTTTCAAGCAGTTGAACTTTGATCTTAAGCA
521 TTGCCATTAGAATTGGAGAATAAAGCTCACTGGGCTTTCAAGCAGTTGAACTTTGATCTTAAGCA
35836599 AGTCGGTGAGAAAGGATGTTACAACTTGATGAGTTGGAAGAGCTGAGGTTATTTTCCTATGAGAA
586 AGTCGGTGAGAAAGGATGTTACAACTTGATGAGTTGGAAGAGCTGAGGTTATTTTCCTATGAGAA
35836664 TGCTAAAATATGCAAAGAATGATCAAAGAGGTGGCATGATACTCATATACAACTTTGCGAGTTTA
651 TGCTAAAATATGCAAAGAATGATCAAAGAGGTGGCATGATACTCATATACAACTTTGCGAGTTTA
*
35836729 AAGAATGCCAGAAGGTGTTGTTGTTTAATTCAAGGCTGAAGTTATTTCCTGGGAAGCTAAAATCT
716 AAGAATGCCAGAAGGTGTTGTTGTTTAATTCAAGGCTGAAGTTATTTCCTGGGAAGCTAAAATCC
*
35836794 CGATGGAAAGGACCCTATACCATTTACCGAGTTTATTCTTATGGAGATATTGAATTATACAACAA
781 CGATGGAAAGGACCCTATACCATTTACCAAGTTTATTCTTATGGAGATATTGAATTATACAACAA
35836859 TTATGGAGGTACAA
846 TTATGGAGGTACAA
35836873 AAATATATCAAGGACGAATGAGATGCCCTTAAAAAATATTTTGGAGATTGAATTATTCGATGTAT
1 AAATATATCAAGGACGAATGAGATGCCCTTAAAAAATATTTTGGAGATTGAATTATTCGATGTAT
35836938 GGGGCATTGACTTCTTAGGCCTGTTTCCTTCTTCGTATGGGAAAAAATACATCTTAGTTGCTGTG
66 GGGGCATTGACTTCTTAGGCCTGTTTCCTTCTTCGTATGGGAAAAAATACATCTTAGTTGCTGTG
35837003 GACTATGTATCCAAGTGGGTTGAAGCTGAAGCATACCCTACAAATGATGCTAAGGTAGTCATGCG
131 GACTATGTATCCAAGTGGGTTGAAGCTGAAGCATACCCTACAAATGATGCTAAGGTAGTCATGCG
35837068 ATTTTTACATAAACATGTGTTTACACGATTTGGGACACCAAGAGCTATTATTAATGATGAAGGGT
196 ATTTTTACATAAACATGTGTTTACACGATTTGGGACACCAAGAGCTATTATTAATGATGAAGGGT
35837133 CTAACTTTGTGAACAAATGACTTAAGTGGTTGCTTGAAAAATATGATGTAAGGCACAATATTGCT
261 CTAACTTTGTGAACAAATGACTTAAGTGGTTGCTTGAAAAATATGATGTAAGGCACAATATTGCT
35837198 ACTGGTTATCACCCCCAATCCAATGGGCAAGTTGAAAGAGTGAACCGTGAAATCAAAGGTATCCT
326 ACTGGTTATCACCCCCAATCCAATGGGCAAGTTGAAAGAGTGAACCGTGAAATCAAAGGTATCCT
35837263 TAAAAAAATAGTACGCCCTAGCAGAAAAGATTGGACTCGAAGGCTCGAAGATGCATTATGGGCCT
391 TAAAAAAATAGTACGCCCTAGCAGAAAAGATTGGACTCGAAGGCTCGAAGATGCATTATGGGCCT
35837328 ATCAAACAACATTTAAGACTCCATTAGGGACTCCTTATCGGTTAGTCTTTGGAAAGGCATGTCAT
456 ATCAAACAACATTTAAGACTCCATTAGGGACTCCTTATCGGTTAGTCTTTGGAAAGGCATGTCAT
35837393 TTGCCATTAGAATTGGAGAATAAAGCTCACTGGGCTTTCAAGCAGTTGAACTTTGATCTTAAGCA
521 TTGCCATTAGAATTGGAGAATAAAGCTCACTGGGCTTTCAAGCAGTTGAACTTTGATCTTAAGCA
35837458 AGTCGGTGAGAAAGGATGTTACAACTTGATGAGTTGGAAGAGCTGAGGTTATTTTCCTATGAGAA
586 AGTCGGTGAGAAAGGATGTTACAACTTGATGAGTTGGAAGAGCTGAGGTTATTTTCCTATGAGAA
35837523 TGCTAAAATATGCAAAGAATGATCAAAGAGGTGGCATGATACTCATATACAACTTTGCGAGTTTA
651 TGCTAAAATATGCAAAGAATGATCAAAGAGGTGGCATGATACTCATATACAACTTTGCGAGTTTA
35837588 AAGAATGCCAGAAGGTGTTGTTGTTTAATTCAAGGCTGAAGTTATTTCCTGGGAAGCTAAAATCC
716 AAGAATGCCAGAAGGTGTTGTTGTTTAATTCAAGGCTGAAGTTATTTCCTGGGAAGCTAAAATCC
35837653 CGATGGAAAGGACCCTATACCATTTACCAAGTTTATTCTTATGGAGATATTGAATTATACAACAA
781 CGATGGAAAGGACCCTATACCATTTACCAAGTTTATTCTTATGGAGATATTGAATTATACAACAA
35837718 TTATGGAGGTACA
846 TTATGGAGGTACA
35837731 TTTAAAGTTA
Statistics
Matches: 855, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
859 855 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29
Consensus pattern (859 bp):
AAATATATCAAGGACGAATGAGATGCCCTTAAAAAATATTTTGGAGATTGAATTATTCGATGTAT
GGGGCATTGACTTCTTAGGCCTGTTTCCTTCTTCGTATGGGAAAAAATACATCTTAGTTGCTGTG
GACTATGTATCCAAGTGGGTTGAAGCTGAAGCATACCCTACAAATGATGCTAAGGTAGTCATGCG
ATTTTTACATAAACATGTGTTTACACGATTTGGGACACCAAGAGCTATTATTAATGATGAAGGGT
CTAACTTTGTGAACAAATGACTTAAGTGGTTGCTTGAAAAATATGATGTAAGGCACAATATTGCT
ACTGGTTATCACCCCCAATCCAATGGGCAAGTTGAAAGAGTGAACCGTGAAATCAAAGGTATCCT
TAAAAAAATAGTACGCCCTAGCAGAAAAGATTGGACTCGAAGGCTCGAAGATGCATTATGGGCCT
ATCAAACAACATTTAAGACTCCATTAGGGACTCCTTATCGGTTAGTCTTTGGAAAGGCATGTCAT
TTGCCATTAGAATTGGAGAATAAAGCTCACTGGGCTTTCAAGCAGTTGAACTTTGATCTTAAGCA
AGTCGGTGAGAAAGGATGTTACAACTTGATGAGTTGGAAGAGCTGAGGTTATTTTCCTATGAGAA
TGCTAAAATATGCAAAGAATGATCAAAGAGGTGGCATGATACTCATATACAACTTTGCGAGTTTA
AAGAATGCCAGAAGGTGTTGTTGTTTAATTCAAGGCTGAAGTTATTTCCTGGGAAGCTAAAATCC
CGATGGAAAGGACCCTATACCATTTACCAAGTTTATTCTTATGGAGATATTGAATTATACAACAA
TTATGGAGGTACAA
Done.