Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 116 of 126
Found at i:35839893 original size:28 final size:28
Alignment explanation
Indices: 35839853--35839908 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
35839843 GAATAAATAC
*
35839853 TTCTTTAGAAAGAAAAAGACTAAGTGAT
1 TTCTTAAGAAAGAAAAAGACTAAGTGAT
35839881 TTCTTAAGAAAGAAAAAGACTAAGTGAT
1 TTCTTAAGAAAGAAAAAGACTAAGTGAT
35839909 GTGGCAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.18, T:0.27
Consensus pattern (28 bp):
TTCTTAAGAAAGAAAAAGACTAAGTGAT
Found at i:35848248 original size:26 final size:26
Alignment explanation
Indices: 35848210--35848445 Score: 217
Period size: 26 Copynumber: 9.1 Consensus size: 26
35848200 ATAATAGGCC
*
35848210 TAAATTATTGAAATACCCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGG
* * * *
35848236 AAAATTATCGAAATACCTTTGATGGT
1 TAAATTATCGAAATACCCTCGATGGG
* *
35848262 TAAATTACCGAAATATCCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGG
* * *
35848288 TAAATTACCTAAATACCCTCAATGGG
1 TAAATTATCGAAATACCCTCGATGGG
* *
35848314 TAAATTA-CTATAATATCCTCGATGGG
1 TAAATTATCGA-AATACCCTCGATGGG
* * *
35848340 TAAATTAGCAAAATTCCCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGG
* * *
35848366 TAAATTA-CTAAAATACCTTCAATGGG
1 TAAATTATC-GAAATACCCTCGATGGG
* *
35848392 TAAATTATCGAAATACCC-CTAAAGGG
1 TAAATTATCGAAATACCCTC-GATGGG
* * *
35848418 TAAATTATTGAAATACCCCCGAAGGG
1 TAAATTATCGAAATACCCTCGATGGG
35848444 TA
1 TA
35848446 GAATGACTGT
Statistics
Matches: 177, Mismatches: 27, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
25 5 0.03
26 168 0.95
27 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAATTATCGAAATACCCTCGATGGG
Found at i:35848344 original size:78 final size:78
Alignment explanation
Indices: 35848210--35848408 Score: 244
Period size: 78 Copynumber: 2.6 Consensus size: 78
35848200 ATAATAGGCC
* * * * * * *
35848210 TAAATTATTGAAATACCCTCGATGGGAAAATTATCGAAATACCTTTGATGGTTAAATTACCGAAA
1 TAAATTACTAAAATACCCTCAATGGGTAAATTATCGAAATACCTTCGATGGGTAAATTACCAAAA
35848275 TAT-CCTCGATGGG
66 T-TCCCTCGATGGG
* *
35848288 TAAATTACCT-AAATACCCTCAATGGGTAAATTA-CTATAATATCC-TCGATGGGTAAATTAGCA
1 TAAATTA-CTAAAATACCCTCAATGGGTAAATTATCGA-AATA-CCTTCGATGGGTAAATTACCA
35848350 AAATTCCCTCGATGGG
63 AAATTCCCTCGATGGG
*
35848366 TAAATTACTAAAATACCTTCAATGGGTAAATTATCGAAATACC
1 TAAATTACTAAAATACCCTCAATGGGTAAATTATCGAAATACC
35848409 CCTAAAGGGT
Statistics
Matches: 105, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
77 7 0.07
78 93 0.89
79 5 0.05
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (78 bp):
TAAATTACTAAAATACCCTCAATGGGTAAATTATCGAAATACCTTCGATGGGTAAATTACCAAAA
TTCCCTCGATGGG
Found at i:35848445 original size:78 final size:77
Alignment explanation
Indices: 35848210--35848445 Score: 242
Period size: 78 Copynumber: 3.0 Consensus size: 77
35848200 ATAATAGGCC
* * * ** *
35848210 TAAATTATTGAAATACCCTCGATGGGAAAATTATCGAAATACCTTTGATGGTTAAATTACCGAAA
1 TAAATTACT-AAATACCCTCAATGGGTAAATTATCGAAATACCCCTGATGGGTAAATTACCGAAA
*
35848275 TATCCTCGATGGG
65 TACCCTCGATGGG
* * * *
35848288 TAAATTACCTAAATACCCTCAATGGGTAAATTA-CTATAATA-TCCTCGATGGGTAAATTAGCAA
1 TAAATTA-CTAAATACCCTCAATGGGTAAATTATCGA-AATACCCCT-GATGGGTAAATTACCGA
*
35848351 AATTCCCTCGATGGG
63 AATACCCTCGATGGG
* * * **
35848366 TAAATTACTAAAATACCTTCAATGGGTAAATTATCGAAATACCCCTAAAGGGTAAATTATTGAAA
1 TAAATTACT-AAATACCCTCAATGGGTAAATTATCGAAATACCCCTGATGGGTAAATTACCGAAA
* *
35848431 TACCCCCGAAGGG
65 TACCCTCGATGGG
35848444 TA
1 TA
35848446 GAATGACTGT
Statistics
Matches: 129, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
77 5 0.04
78 118 0.91
79 6 0.05
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (77 bp):
TAAATTACTAAATACCCTCAATGGGTAAATTATCGAAATACCCCTGATGGGTAAATTACCGAAAT
ACCCTCGATGGG
Found at i:35848894 original size:131 final size:131
Alignment explanation
Indices: 35848660--35848922 Score: 508
Period size: 131 Copynumber: 2.0 Consensus size: 131
35848650 CTGGTGGCTT
35848660 TGCCACACATACTGAACTGGCAGCTAAGGTGCAATATTGGTGTGTGGGCTGGGTGGGTCGACTTT
1 TGCCACACATACTGAACTGGCAGCTAAGGTGCAATATTGGTGTGTGGGCTGGGTGGGTCGACTTT
*
35848725 GTCCCCACATGGTGTGTAGGGTTGGTACGGGTGGTGTGTTTGGCTGGATTTGGGTGGTTTGCATA
66 GTCCCCACATGGTGTGTAGGGTTGGTACGGGTGGTGTGTTTGGCTGGATTTGGGTGGGTTGCATA
35848790 C
131 C
*
35848791 TGCCACATATACTGAACTGGCAGCTAAGGTGCAATATTGGTGTGTGGGCTGGGTGGGTCGACTTT
1 TGCCACACATACTGAACTGGCAGCTAAGGTGCAATATTGGTGTGTGGGCTGGGTGGGTCGACTTT
35848856 GTCCCCACATGGTGTGTAGGGTTGGTACGGGTGGTGTGTTTGGCTGGATTTGGGTGGGTTGCATA
66 GTCCCCACATGGTGTGTAGGGTTGGTACGGGTGGTGTGTTTGGCTGGATTTGGGTGGGTTGCATA
35848921 C
131 C
35848922 T
1 T
35848923 ATCACCATTC
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 130 1.00
ACGTcount: A:0.15, C:0.16, G:0.38, T:0.32
Consensus pattern (131 bp):
TGCCACACATACTGAACTGGCAGCTAAGGTGCAATATTGGTGTGTGGGCTGGGTGGGTCGACTTT
GTCCCCACATGGTGTGTAGGGTTGGTACGGGTGGTGTGTTTGGCTGGATTTGGGTGGGTTGCATA
C
Found at i:35855389 original size:951 final size:951
Alignment explanation
Indices: 35853544--35855449 Score: 3120
Period size: 951 Copynumber: 2.0 Consensus size: 951
35853534 CAAGACTAGA
* * *
35853544 CTTTAGTACTGCATTCCATCCTCAGACAGATAGATAGTCAAAGAGGGTGCTTCAGATGCTGGAGG
1 CTTTAGTACTACATTCCATCCTCAGACAGATAGATAGTCAAAGAGGATGCTTCAGATACTGGAGG
35853609 ACATGTTGAGAAGTTGTGTCATTGATTTTCGAGGCAACTAGGAAGACTAGTTGCCACTGGCAAAG
66 ACATGTTGAGAAGTTGTGTCATTGATTTTCGAGGCAACTAGGAAGACTAGTTGCCACTGGCAAAG
* *
35853674 TTTGGATATAATAACATCTATCAGTCTAGTATTCAAATGGCACCGTACGAGGCATTGTATGGTCG
131 TTTCGATATAATAACACCTATCAGTCTAGTATTCAAATGGCACCGTACGAGGCATTGTATGGTCG
* *
35853739 TAGGTGTCGTACCCTTACCTGTCGGACTAAATTGGGCGAACGGTTAGTTTTGGGGCAAGAATTAG
196 TAGGTGTCGTACCCTTACCTGTCGGACTAAATTGGGCGAACGATGAGTTTTGGGGCAAGAATTAG
* *
35853804 TTTCTGATACCGAAGAAAAGGTAAAGTGATTCGAGTCCAGTTGAAGGAAGCATCTCATAGACAGA
261 TTTCTGATACCGAAGAAAAGGTAAAGTGATTCAAGGCCAGTTGAAGGAAGCATCTCATAGACAGA
*
35853869 AGTCTTATGCGGATCTGAAGCGCCCAGAGATTGAGTACTCTGTGGGGGATTTTTTTTCTCATGGT
326 AGTCTTATGCGGATCTGAAGCGCCCAGAGATTGAGTACTCTGTGGAGGATTTTTTTTCTCATGGT
*
35853934 TTCTCCTTGGAAAAAAAATACTAAGGTTTGGACAGAAAGGTAAGCTTAGCCCTACATTTATTGGG
391 TTCTACTTGGAAAAAAAATACTAAGGTTTGGACAGAAAGGTAAGCTTAGCCCTACATTTATTGGG
* * * *
35853999 CCTTACTGTAGACTGAAGCATGTGGGACCGGTCGCTTACTAACTTGAGTAGCCTCTAGAATTAGA
456 CCTTACCGTAGACTGAAGCATATGGGACCGATCGCTTACCAACTTGAGTAGCCTCTAGAATTAGA
* *
35854064 CCGAATTCAAGATGTGTTTCAATTTTCCATGTCAAGGCGTTATCGCTCTGATCCCACACACATTG
521 CCGAATTCAAGATGTGTTTCAATTTTCCATGTCAAGACGTTATCGCTCTAATCCCACACACATTG
* * *
35854129 TTCTAGTGGAGGAAATCAAAGTTAGGCCAGATTTGACCTTTGAGGAAAAACTAGTACAGATATTT
586 TTCTAATGGAGGAAATCAAAGTTAGGCCAGATTTGACCTTCGAGGAAAAACTAGTACAGATATTG
*
35854194 GATCGCGAGGTTAAGGTACTAAGGAAAAAGTTTATTCCTATAGTCAAAGTGCTTTGGCATAATCT
651 GATCGCGAGGTTAAGGTACTAAGGAAAAAGTTTATTCCTATAGTCAAAGTGCTTTGGCATAATCA
* * *
35854259 CAGTTCAGAGGAAGCCACGTGAGAACCCGAAGAGGCGATGAGATAACAATACCCTCATCTTTTCT
716 CAGTACAGAGGAAGCCACGTGAGAACCCGAAGAGGCGATGAGACAACAATACCCTCACCTTTTCT
35854324 GATCAGGTAAATTTCGAGGCTGAAATTTCGTTAAGGGGGTAGAATTGTAACGCCCCAAATAGTCA
781 GATCAGGTAAATTTCGAGGCTGAAATTTCGTTAAGGGGGTAGAATTGTAACGCCCCAAATAGTCA
* *
35854389 AGTTTTTAATTTCTGCATGTTTTCACACTAATTGCTTGTATGATTTAATGGCTAGGTGTTTTAGG
846 AGTTTTTAATTTCTGCATATTTTCACACTAATTGCTTATATGATTTAATGGCTAGGTGTTTTAGG
*
35854454 TGTGTTTGCGAGTGTCTGAGAAGCCTGGGTTCAAGTATTGG
911 TGTGTTTGCAAGTGTCTGAGAAGCCTGGGTTCAAGTATTGG
* *
35854495 CTTTAGTACTACGTTCCATCCTCAGACAGATAGATAGTCAGAGAGGATGCTTCAGATACTGGAGG
1 CTTTAGTACTACATTCCATCCTCAGACAGATAGATAGTCAAAGAGGATGCTTCAGATACTGGAGG
* * * * * * * *
35854560 ACGTGTTGAGAGGTTGTGTCATTGA-TTTCTGAGGTAGCTGGGAAGACTATTTGCCACTGGTAGA
66 ACATGTTGAGAAGTTGTGTCATTGATTTTC-GAGGCAACTAGGAAGACTAGTTGCCACTGGCAAA
35854624 GTTTACG-TATAATAACACCTATCAGTCTAGTATTCAAATGGCACCGTACGAGGCATTGTATGGT
130 GTTT-CGATATAATAACACCTATCAGTCTAGTATTCAAATGGCACCGTACGAGGCATTGTATGGT
* *
35854688 CGTAGGTGTCGTACCCTTACCTGTTGGACTGAATTGGGCGAACGATGAGTTTTGGGGCAAGAATT
194 CGTAGGTGTCGTACCCTTACCTGTCGGACTAAATTGGGCGAACGATGAGTTTTGGGGCAAGAATT
* * * * * *
35854753 CGTTTTTGATACCGAAGAAAAGGTAAAAGTGATTCAAGGCCGGTTGAAGGAAGCGTCTGATAGAT
259 AGTTTCTGATACCGAAGAAAAGGT-AAAGTGATTCAAGGCCAGTTGAAGGAAGCATCTCATAGAC
35854818 AGAAGTCTTATGCGGATCTGAAGCGCCCAGAGATTGAGTACTCTGT-GAGGATATTTTTTTCTCA
323 AGAAGTCTTATGCGGATCTGAAGCGCCCAGAGATTGAGTACTCTGTGGAGGAT-TTTTTTTCTCA
* * * * **
35854882 TGGTTTCTACTTGG-AAAAAAATATTGAGGTTTGGACAGAAGGGTAAGCTTAGCCTTAGGTTTAT
387 TGGTTTCTACTTGGAAAAAAAATACTAAGGTTTGGACAGAAAGGTAAGCTTAGCCCTACATTTAT
* *
35854946 TGGGCCTTACCGTATACTGAAGCATATGGGACCGATCGCTTACCAACTTGAGTTGCCTCTAGAAT
452 TGGGCCTTACCGTAGACTGAAGCATATGGGACCGATCGCTTACCAACTTGAGTAGCCTCTAGAAT
* * * **
35855011 TAGACCGAATTCATGATGTGTTTCACTTTTCCATGTTAAGACGTTATCGCTCTAATCCGTCACAC
517 TAGACCGAATTCAAGATGTGTTTCAATTTTCCATGTCAAGACGTTATCGCTCTAATCCCACACAC
*
35855076 GTTGTTCTAATGGAGGAAATCAAAGTTAGGCCAGATTTGACCTTCGAGGAAAAACTAGTACAGAT
582 ATTGTTCTAATGGAGGAAATCAAAGTTAGGCCAGATTTGACCTTCGAGGAAAAACTAGTACAGAT
* *
35855141 ATTGGATCGCGAGGTTAAGGTACTAAGGAAGAAGTTTATTCCTATAGTCAATGTGCTTTGGCATA
647 ATTGGATCGCGAGGTTAAGGTACTAAGGAAAAAGTTTATTCCTATAGTCAAAGTGCTTTGGCATA
* *
35855206 ATCACAGTACAGAGGAAGCCACGTGGGAACCCGAAGAGGCGAT-ACGACAATAATACCCTCACCT
712 ATCACAGTACAGAGGAAGCCACGTGAGAACCCGAAGAGGCGATGA-GACAACAATACCCTCACCT
35855270 TTTCTGATCAGGTAAATTTCGAGGCTGAAATTTCGTTAAGGGGGTAGAATTGTAACGCCCCAAAT
776 TTTCTGATCAGGTAAATTTCGAGGCTGAAATTTCGTTAAGGGGGTAGAATTGTAACGCCCCAAAT
* *
35855335 ATTCAAGTTTTTAATTTCTGCATATTTTCACACTAATTGCTTATATGCTTTAATGGCTAGGTGTT
841 AGTCAAGTTTTTAATTTCTGCATATTTTCACACTAATTGCTTATATGATTTAATGGCTAGGTGTT
* * *
35855400 TTAGGTGTGTTTGCAAGTGTTTGAGAAGCTTGGGTTCAAGTCTTGG
906 TTAGGTGTGTTTGCAAGTGTCTGAGAAGCCTGGGTTCAAGTATTGG
35855446 CTTT
1 CTTT
35855450 TGCAGAATTT
Statistics
Matches: 882, Mismatches: 68, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
950 5 0.01
951 772 0.88
952 105 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (951 bp):
CTTTAGTACTACATTCCATCCTCAGACAGATAGATAGTCAAAGAGGATGCTTCAGATACTGGAGG
ACATGTTGAGAAGTTGTGTCATTGATTTTCGAGGCAACTAGGAAGACTAGTTGCCACTGGCAAAG
TTTCGATATAATAACACCTATCAGTCTAGTATTCAAATGGCACCGTACGAGGCATTGTATGGTCG
TAGGTGTCGTACCCTTACCTGTCGGACTAAATTGGGCGAACGATGAGTTTTGGGGCAAGAATTAG
TTTCTGATACCGAAGAAAAGGTAAAGTGATTCAAGGCCAGTTGAAGGAAGCATCTCATAGACAGA
AGTCTTATGCGGATCTGAAGCGCCCAGAGATTGAGTACTCTGTGGAGGATTTTTTTTCTCATGGT
TTCTACTTGGAAAAAAAATACTAAGGTTTGGACAGAAAGGTAAGCTTAGCCCTACATTTATTGGG
CCTTACCGTAGACTGAAGCATATGGGACCGATCGCTTACCAACTTGAGTAGCCTCTAGAATTAGA
CCGAATTCAAGATGTGTTTCAATTTTCCATGTCAAGACGTTATCGCTCTAATCCCACACACATTG
TTCTAATGGAGGAAATCAAAGTTAGGCCAGATTTGACCTTCGAGGAAAAACTAGTACAGATATTG
GATCGCGAGGTTAAGGTACTAAGGAAAAAGTTTATTCCTATAGTCAAAGTGCTTTGGCATAATCA
CAGTACAGAGGAAGCCACGTGAGAACCCGAAGAGGCGATGAGACAACAATACCCTCACCTTTTCT
GATCAGGTAAATTTCGAGGCTGAAATTTCGTTAAGGGGGTAGAATTGTAACGCCCCAAATAGTCA
AGTTTTTAATTTCTGCATATTTTCACACTAATTGCTTATATGATTTAATGGCTAGGTGTTTTAGG
TGTGTTTGCAAGTGTCTGAGAAGCCTGGGTTCAAGTATTGG
Found at i:35855775 original size:10 final size:10
Alignment explanation
Indices: 35855760--35855787 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
35855750 TAAGGAAGTT
35855760 GGAGTGTGGG
1 GGAGTGTGGG
35855770 GGAGTGTGGG
1 GGAGTGTGGG
35855780 GGAGTGTG
1 GGAGTGTG
35855788 TGTGCCGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.68, T:0.21
Consensus pattern (10 bp):
GGAGTGTGGG
Found at i:35857225 original size:27 final size:27
Alignment explanation
Indices: 35857174--35857238 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
35857164 ATGGAGGAAG
* *
35857174 TACTGATACTGGTTGCTCTGGCACAAC
1 TACTGATACTGGTGGCTCTGCCACAAC
* *
35857201 TACTGTTACTGGTGGCTTTGCCACATA-
1 TACTGATACTGGTGGCTCTGCCACA-AC
35857228 TACTGA-ACTGG
1 TACTGATACTGG
35857239 AGCTATACTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.16
27 26 0.81
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGATACTGGTGGCTCTGCCACAAC
Found at i:35858324 original size:33 final size:34
Alignment explanation
Indices: 35858270--35858334 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
35858260 AAACACCACC
*
35858270 ATTCAACCTACCTTAGAACCACCACATCACCAAT
1 ATTCAACCTACCTTAGAACCACCACACCACCAAT
*
35858304 ATTCAACC-ACCTTAGCACCACCACACCACCA
1 ATTCAACCTACCTTAGAACCACCACACCACCA
35858335 CCACATTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 21 0.72
34 8 0.28
ACGTcount: A:0.37, C:0.43, G:0.03, T:0.17
Consensus pattern (34 bp):
ATTCAACCTACCTTAGAACCACCACACCACCAAT
Found at i:35867396 original size:26 final size:26
Alignment explanation
Indices: 35867360--35867611 Score: 344
Period size: 26 Copynumber: 9.7 Consensus size: 26
35867350 GTAACGGGCC
* *
35867360 TAAATTATCGAAATACACTCGATGGG
1 TAAATTATCAAAATACCCTCGATGGG
*
35867386 TAAATTATCGAAATACCCTCGATGGG
1 TAAATTATCAAAATACCCTCGATGGG
* *
35867412 TAAATTATCGAAATACCCTCGATAGG
1 TAAATTATCAAAATACCCTCGATGGG
35867438 TAAATTA-CTAAAATACCCTCGATGGG
1 TAAATTATC-AAAATACCCTCGATGGG
*
35867464 TAAATTATCGAAATACCCTCGATGGG
1 TAAATTATCAAAATACCCTCGATGGG
*
35867490 CAAATTATCAAAATACCCTCGATGGG
1 TAAATTATCAAAATACCCTCGATGGG
* * *
35867516 TAAATTATCGAAATACCTTCAATGGG
1 TAAATTATCAAAATACCCTCGATGGG
* *
35867542 TAAATTACCAAAATAACCTCGATGGG
1 TAAATTATCAAAATACCCTCGATGGG
* *
35867568 TAAATTACCAAAATACCCTCAATGGG
1 TAAATTATCAAAATACCCTCGATGGG
* *
35867594 TATATTACCAAAATACCC
1 TAAATTATCAAAATACCC
35867612 CTGAAGGGTA
Statistics
Matches: 205, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
25 1 0.00
26 203 0.99
27 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (26 bp):
TAAATTATCAAAATACCCTCGATGGG
Found at i:35867422 original size:52 final size:52
Alignment explanation
Indices: 35867360--35867648 Score: 384
Period size: 52 Copynumber: 5.5 Consensus size: 52
35867350 GTAACGGGCC
* * *
35867360 TAAATTATCGAAATACACTCGATGGGTAAATTATCGAAATACCCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGG
* *
35867412 TAAATTATCGAAATACCCTCGATAGGTAAATTACTAAAATACCCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGG
* *
35867464 TAAATTATCGAAATACCCTCGATGGGCAAATTATCAAAATACCCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGG
* * *
35867516 TAAATTATCGAAATACCTTCAATGGGTAAATTACCAAAATAACCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGG
* * * * *
35867568 TAAATTACCAAAATACCCTCAATGGGTATATTACCAAAATACCC-CTGAAGGG
1 TAAATTATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTC-GATGGG
* *
35867620 TAACATTA-CTGAAATACCCCCGAAGGGTA
1 TAA-ATTATC-GAAATACCCTCGATGGGTA
35867649 GAATGACTGT
Statistics
Matches: 210, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
51 1 0.00
52 190 0.90
53 19 0.09
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (52 bp):
TAAATTATCGAAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGG
Found at i:35867459 original size:78 final size:78
Alignment explanation
Indices: 35867370--35867648 Score: 348
Period size: 78 Copynumber: 3.6 Consensus size: 78
35867360 TAAATTATCG
* *
35867370 AAATACACTCGATGGGTAAATTATCGAAATACCCTCGATGGGTAAATTATCGAAATACCCTCGAT
1 AAATACCCTCGATGGGTAAATTATCGAAATACCCTCGATGGGTAAATTATCAAAATACCCTCGAT
*
35867435 AGGTAAATTACTA
66 GGGTAAATTACTA
*
35867448 AAATACCCTCGATGGGTAAATTATCGAAATACCCTCGATGGGCAAATTATCAAAATACCCTCGAT
1 AAATACCCTCGATGGGTAAATTATCGAAATACCCTCGATGGGTAAATTATCAAAATACCCTCGAT
*
35867513 GGGTAAATTA-TCG
66 GGGTAAATTACT-A
* * * * * * *
35867526 AAATACCTTCAATGGGTAAATTACCAAAATAACCTCGATGGGTAAATTACCAAAATACCCTCAAT
1 AAATACCCTCGATGGGTAAATTATCGAAATACCCTCGATGGGTAAATTATCAAAATACCCTCGAT
* *
35867591 GGGTATATTACCA
66 GGGTAAATTACTA
* * *
35867604 AAATACCC-CTGAAGGGTAACATTA-CTGAAATACCCCCGAAGGGTA
1 AAATACCCTC-GATGGGTAA-ATTATC-GAAATACCCTCGATGGGTA
35867649 GAATGACTGT
Statistics
Matches: 173, Mismatches: 23, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
77 2 0.01
78 152 0.88
79 19 0.11
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (78 bp):
AAATACCCTCGATGGGTAAATTATCGAAATACCCTCGATGGGTAAATTATCAAAATACCCTCGAT
GGGTAAATTACTA
Found at i:35867620 original size:26 final size:25
Alignment explanation
Indices: 35867360--35867648 Score: 202
Period size: 26 Copynumber: 11.1 Consensus size: 25
35867350 GTAACGGGCC
* * * *
35867360 TAAATTATCGAAATACACTCGATGGG
1 TAAATTACCAAAATACCCT-GAAGGG
* * *
35867386 TAAATTATCGAAATACCCTCGATGGG
1 TAAATTACCAAAATACCCT-GAAGGG
* *
35867412 TAAATTATCGAAATACCCTCGATA-GG
1 TAAATTACCAAAATACCCT-GA-AGGG
* *
35867438 TAAATTACTAAAATACCCTCGATGGG
1 TAAATTACCAAAATACCCT-GAAGGG
* * *
35867464 TAAATTATCGAAATACCCTCGATGGG
1 TAAATTACCAAAATACCCT-GAAGGG
* * *
35867490 CAAATTATCAAAATACCCTCGATGGG
1 TAAATTACCAAAATACCCT-GAAGGG
* * * *
35867516 TAAATTATCGAAATACCTTCAATGGG
1 TAAATTACCAAAATACCCTGAA-GGG
* *
35867542 TAAATTACCAAAATAACCTCGATGGG
1 TAAATTACCAAAATACCCT-GAAGGG
*
35867568 TAAATTACCAAAATACCCTCAATGGG
1 TAAATTACCAAAATACCCTGAA-GGG
*
35867594 TATATTACCAAAATACCCCTGAAGGG
1 TAAATTACCAAAATA-CCCTGAAGGG
** *
35867620 TAACATTACTGAAATACCCCCGAAGGG
1 TAA-ATTACCAAAATA-CCCTGAAGGG
35867647 TA
1 TA
35867649 GAATGACTGT
Statistics
Matches: 225, Mismatches: 31, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
25 2 0.01
26 194 0.86
27 29 0.13
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (25 bp):
TAAATTACCAAAATACCCTGAAGGG
Found at i:35867657 original size:27 final size:27
Alignment explanation
Indices: 35867604--35867666 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
35867594 TATATTACCA
* *
35867604 AAATACCCCTGAAGGGTAACATTACTG
1 AAATACCCCCGAAGGGTAACATGACTG
35867631 AAATACCCCCGAAGGGTAGA-ATGACTG
1 AAATACCCCCGAAGGGTA-ACATGACTG
**
35867658 TTATACCCC
1 AAATACCCC
35867667 TAGGAGATGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (27 bp):
AAATACCCCCGAAGGGTAACATGACTG
Found at i:35867856 original size:27 final size:27
Alignment explanation
Indices: 35867818--35867882 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
35867808 ATGGAGGAAG
35867818 TACTGATACTGGTGGCTCTGCCACAAC
1 TACTGATACTGGTGGCTCTGCCACAAC
* *
35867845 TACTGTTACTGGTGGCTTTGCCACATA-
1 TACTGATACTGGTGGCTCTGCCACA-AC
35867872 TACTGAT-CTGG
1 TACTGATACTGG
35867883 CAGCTATGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.12
27 29 0.85
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGATACTGGTGGCTCTGCCACAAC
Found at i:35875047 original size:26 final size:26
Alignment explanation
Indices: 35875010--35875182 Score: 231
Period size: 26 Copynumber: 6.7 Consensus size: 26
35875000 GTAATGGGCC
*
35875010 TAAATTATCGAAATACCCTTGATGGG
1 TAAATTATCGAAATACCCTCGATGGG
* *
35875036 TATATTACCGAAATACCCTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGG
*
35875062 TAAATTATCGAAATACCCTCAATGGG
1 TAAATTATCGAAATACCCTCGATGGG
* **
35875088 TAAATTATTGAAATACCCTCGACAGG
1 TAAATTATCGAAATACCCTCGATGGG
* * *
35875114 TAAATTACCAAAATACCTTCGATGGG
1 TAAATTATCGAAATACCCTCGATGGG
35875140 TAAATTATCGAAATACCCTC-AGTGGG
1 TAAATTATCGAAATACCCTCGA-TGGG
*
35875166 TAAATTACCGAAATACC
1 TAAATTATCGAAATACC
35875183 TCCGTAGGGT
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
25 1 0.01
26 125 0.99
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAATTATCGAAATACCCTCGATGGG
Found at i:35875139 original size:78 final size:78
Alignment explanation
Indices: 35875010--35875182 Score: 265
Period size: 78 Copynumber: 2.2 Consensus size: 78
35875000 GTAATGGGCC
* ** * *
35875010 TAAATTATCGAAATACCCTTGATGGGTATATTACCGAAATACCCTCGATGGGTAAATTATCGAAA
1 TAAATTATCGAAATACCCTCGACAGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCGAAA
35875075 TACCCTCAATGGG
66 TACCCTCAATGGG
* *
35875088 TAAATTATTGAAATACCCTCGACAGGTAAATTACCAAAATACCTTCGATGGGTAAATTATCGAAA
1 TAAATTATCGAAATACCCTCGACAGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCGAAA
*
35875153 TACCCTCAGTGGG
66 TACCCTCAATGGG
*
35875166 TAAATTACCGAAATACC
1 TAAATTATCGAAATACC
35875183 TCCGTAGGGT
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 85 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (78 bp):
TAAATTATCGAAATACCCTCGACAGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCGAAA
TACCCTCAATGGG
Found at i:35875183 original size:52 final size:52
Alignment explanation
Indices: 35875010--35875210 Score: 230
Period size: 52 Copynumber: 3.8 Consensus size: 52
35875000 GTAATGGGCC
* * *
35875010 TAAATTATCGAAATACCCTT-GATGGGTATATTACCGAAATACCCTCGATGGG
1 TAAATTACCGAAATA-CCTTCGATGGGTAAATTATCGAAATACCCTCGATGGG
* * * * **
35875062 TAAATTATCGAAATACCCTCAATGGGTAAATTATTGAAATACCCTCGACAGG
1 TAAATTACCGAAATACCTTCGATGGGTAAATTATCGAAATACCCTCGATGGG
*
35875114 TAAATTACCAAAATACCTTCGATGGGTAAATTATCGAAATACCCTC-AGTGGG
1 TAAATTACCGAAATACCTTCGATGGGTAAATTATCGAAATACCCTCGA-TGGG
*
35875166 TAAATTACCGAAATACCTCCG-TAGGGTAAAATTAGT-GAAATACCC
1 TAAATTACCGAAATACCTTCGAT-GGGT-AAATTA-TCGAAATACCC
35875211 CCAAAAGGTA
Statistics
Matches: 128, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
51 5 0.04
52 107 0.84
53 15 0.12
54 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (52 bp):
TAAATTACCGAAATACCTTCGATGGGTAAATTATCGAAATACCCTCGATGGG
Found at i:35875192 original size:26 final size:26
Alignment explanation
Indices: 35875010--35875209 Score: 160
Period size: 26 Copynumber: 7.7 Consensus size: 26
35875000 GTAATGGGCC
* *
35875010 TAAATTATCGAAATACC-CTTGATGGG
1 TAAATTACCGAAATACCTC-CGATGGG
*
35875036 TATATTACCGAAATACC-CTCGATGGG
1 TAAATTACCGAAATACCTC-CGATGGG
* *
35875062 TAAATTATCGAAATACC-CTCAATGGG
1 TAAATTACCGAAATACCTC-CGATGGG
** **
35875088 TAAATTATTGAAATACC-CTCGACAGG
1 TAAATTACCGAAATACCTC-CGATGGG
* *
35875114 TAAATTACCAAAATACCTTCGATGGG
1 TAAATTACCGAAATACCTCCGATGGG
* *
35875140 TAAATTATCGAAATACCCTCAG-TGGG
1 TAAATTACCGAAATA-CCTCCGATGGG
35875166 TAAATTACCGAAATACCTCCG-TAGGG
1 TAAATTACCGAAATACCTCCGAT-GGG
**
35875192 TAAAATTAGTGAAATACC
1 T-AAATTACCGAAATACC
35875210 CCCAAAAGGT
Statistics
Matches: 146, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
25 6 0.04
26 122 0.84
27 18 0.12
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
TAAATTACCGAAATACCTCCGATGGG
Found at i:35875646 original size:28 final size:27
Alignment explanation
Indices: 35875602--35875661 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
35875592 CTTGCACCAT
* *
35875602 ACTGATACTATATTGGGCTTAGGCCCAC
1 ACTGTTACTATAATGGGC-TAGGCCCAC
* *
35875630 ACTGTTACTATAATGGGCTGGGTCCAC
1 ACTGTTACTATAATGGGCTAGGCCCAC
35875657 ACTGT
1 ACTGT
35875662 ACTGATACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 12 0.43
28 16 0.57
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
ACTGTTACTATAATGGGCTAGGCCCAC
Found at i:35880984 original size:30 final size:30
Alignment explanation
Indices: 35880950--35881007 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35880940 CTGAGCTTTG
35880950 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
* * * *
35880980 GGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
35881008 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAA
Found at i:35881432 original size:42 final size:43
Alignment explanation
Indices: 35881370--35881562 Score: 218
Period size: 43 Copynumber: 4.5 Consensus size: 43
35881360 AGATTCCCTG
* * *
35881370 AGGGGTTGCTAAGTGCTGATTAC-CCGAATTATTGATT-TTAA
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATTATTGATTGTGAA
35881411 AGGTGGTTGCTAAGTGCTGATTCCACCGTA-TATTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCCACCGTATTA-TTGATTGTGAA
* * * * * *
35881455 AGGGGTTGCTATGTGTTGATTCC-CCGTATCACTGAATAT-AA
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATTATTGATTGTGAA
35881496 AGGTGGTTGCTAAGTGCTGATTCCACCGTATCT-TTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCCACCGTAT-TATTGATTGTGAA
*
35881540 AGGGGTTGCTATGTGCTGATTCC
1 AGGGGTTGCTAAGTGCTGATTCC
35881563 TCATATCACT
Statistics
Matches: 127, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
41 8 0.06
42 49 0.39
43 59 0.46
44 11 0.09
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (43 bp):
AGGGGTTGCTAAGTGCTGATTCCACCGTATTATTGATTGTGAA
Found at i:35881513 original size:85 final size:84
Alignment explanation
Indices: 35881370--35881607 Score: 332
Period size: 85 Copynumber: 2.8 Consensus size: 84
35881360 AGATTCCCTG
* * * * * *
35881370 AGGGGTTGCTAAGTGCTGATTACCCGAATTATTGATTTTAAAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGA-ATTAAAGGTGGTTGCTAAGTGCTGATTCC
35881435 ACCGTATATTTGATTGTGAA
65 ACCGTATATTTGATTGTGAA
*
35881455 AGGGGTTGCTATGTGTTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
*
35881520 ACCGTATCTTTGATTGTGAA
65 ACCGTATATTTGATTGTGAA
* * * * * *
35881540 AGGGGTTGCTATGTGCTGATTCCTCATATCACTGAATTTAATGTGGTTGCTAAGTGTTGAATCCA
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
35881605 CCG
66 CCG
35881608 AGTAATGGAT
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
84 28 0.20
85 109 0.80
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.36
Consensus pattern (84 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
CCGTATATTTGATTGTGAA
Found at i:35883724 original size:24 final size:24
Alignment explanation
Indices: 35883692--35883744 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
35883682 TTCATGTATG
*
35883692 AAAAGAGATGATCATAAGTTAAAA
1 AAAAAAGATGATCATAAGTTAAAA
35883716 AAAAAAGATGATCATAAGTTAAAA
1 AAAAAAGATGATCATAAGTTAAAA
35883740 AAAAA
1 AAAAA
35883745 GTTTATGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.64, C:0.04, G:0.13, T:0.19
Consensus pattern (24 bp):
AAAAAAGATGATCATAAGTTAAAA
Found at i:35884590 original size:24 final size:24
Alignment explanation
Indices: 35884558--35884610 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
35884548 TTCATGTATG
*
35884558 AAAAGAGATGATCATAAGTTAAAA
1 AAAAAAGATGATCATAAGTTAAAA
35884582 AAAAAAGATGATCATAAGTTAAAA
1 AAAAAAGATGATCATAAGTTAAAA
35884606 AAAAA
1 AAAAA
35884611 GTTTATGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.64, C:0.04, G:0.13, T:0.19
Consensus pattern (24 bp):
AAAAAAGATGATCATAAGTTAAAA
Found at i:35885350 original size:866 final size:866
Alignment explanation
Indices: 35883679--35885412 Score: 3468
Period size: 866 Copynumber: 2.0 Consensus size: 866
35883669 TGATATGTAC
35883679 ATTTTCATGTATGAAAAGAGATGATCATAAGTTAAAAAAAAAAGATGATCATAAGTTAAAAAAAA
1 ATTTTCATGTATGAAAAGAGATGATCATAAGTTAAAAAAAAAAGATGATCATAAGTTAAAAAAAA
35883744 AGTTTATGTTGTGATAAGCTCATCCAAACATGTTGGTGATTATATGATGCTATGTGCTCAACATA
66 AGTTTATGTTGTGATAAGCTCATCCAAACATGTTGGTGATTATATGATGCTATGTGCTCAACATA
35883809 TTTGATTAAGTGAATATGATAAGCAAATTTACTTAAATAAATGGAATGTGTGTTTATGTACATCT
131 TTTGATTAAGTGAATATGATAAGCAAATTTACTTAAATAAATGGAATGTGTGTTTATGTACATCT
35883874 GCTTGAATAAGTGAAATCAGTACGTTCATATGATAGAATCTTATGTTTAATTGTTAAATTAAAGA
196 GCTTGAATAAGTGAAATCAGTACGTTCATATGATAGAATCTTATGTTTAATTGTTAAATTAAAGA
35883939 TAATAAGATATTTTGTTTTATGTTTTTACTATTAAACCATGAATATTATAATAGCATGAAAATTG
261 TAATAAGATATTTTGTTTTATGTTTTTACTATTAAACCATGAATATTATAATAGCATGAAAATTG
35884004 AATTGGAAGATTAAATTGAATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAAT
326 AATTGGAAGATTAAATTGAATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAAT
35884069 CGACAAAAAAAACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATAT
391 CGACAAAAAAAACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATAT
35884134 ATGGGATATGGCATTGGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATA
456 ATGGGATATGGCATTGGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATA
35884199 TGTAAATATGTGTAAGACCATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAA
521 TGTAAATATGTGTAAGACCATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAA
35884264 GACGTTCTCTAATTAAATAAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTATA
586 GACGTTCTCTAATTAAATAAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTATA
35884329 TATTAATATTGAGCTCGAGTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCAT
651 TATTAATATTGAGCTCGAGTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCAT
35884394 AATACATAAATGTGTTAATTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGAT
716 AATACATAAATGTGTTAATTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGAT
35884459 AAATGCAAAGTCATATATATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCA
781 AAATGCAAAGTCATATATATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCA
35884524 CCCCCTCATTAGTATTGTTTT
846 CCCCCTCATTAGTATTGTTTT
35884545 ATTTTCATGTATGAAAAGAGATGATCATAAGTTAAAAAAAAAAGATGATCATAAGTTAAAAAAAA
1 ATTTTCATGTATGAAAAGAGATGATCATAAGTTAAAAAAAAAAGATGATCATAAGTTAAAAAAAA
35884610 AGTTTATGTTGTGATAAGCTCATCCAAACATGTTGGTGATTATATGATGCTATGTGCTCAACATA
66 AGTTTATGTTGTGATAAGCTCATCCAAACATGTTGGTGATTATATGATGCTATGTGCTCAACATA
35884675 TTTGATTAAGTGAATATGATAAGCAAATTTACTTAAATAAATGGAATGTGTGTTTATGTACATCT
131 TTTGATTAAGTGAATATGATAAGCAAATTTACTTAAATAAATGGAATGTGTGTTTATGTACATCT
35884740 GCTTGAATAAGTGAAATCAGTACGTTCATATGATAGAATCTTATGTTTAATTGTTAAATTAAAGA
196 GCTTGAATAAGTGAAATCAGTACGTTCATATGATAGAATCTTATGTTTAATTGTTAAATTAAAGA
35884805 TAATAAGATATTTTGTTTTATGTTTTTACTATTAAACCATGAATATTATAATAGCATGAAAATTG
261 TAATAAGATATTTTGTTTTATGTTTTTACTATTAAACCATGAATATTATAATAGCATGAAAATTG
35884870 AATTGGAAGATTAAATTGAATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAAT
326 AATTGGAAGATTAAATTGAATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAAT
35884935 CGACAAAAAAAACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATAT
391 CGACAAAAAAAACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATAT
35885000 ATGGGATATGGCATTGGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATA
456 ATGGGATATGGCATTGGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATA
35885065 TGTAAATATGTGTAAGACCATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAA
521 TGTAAATATGTGTAAGACCATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAA
35885130 GACGTTCTCTAATTAAATAAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTATA
586 GACGTTCTCTAATTAAATAAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTATA
35885195 TATTAATATTGAGCTCGAGTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCAT
651 TATTAATATTGAGCTCGAGTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCAT
35885260 AATACATAAATGTGTTAATTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGAT
716 AATACATAAATGTGTTAATTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGAT
35885325 AAATGCAAAGTCATATATATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCA
781 AAATGCAAAGTCATATATATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCA
35885390 CCCCCTCATTAGTATTGTTTT
846 CCCCCTCATTAGTATTGTTTT
35885411 AT
1 AT
35885413 GACGAAAATT
Statistics
Matches: 868, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
866 868 1.00
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (866 bp):
ATTTTCATGTATGAAAAGAGATGATCATAAGTTAAAAAAAAAAGATGATCATAAGTTAAAAAAAA
AGTTTATGTTGTGATAAGCTCATCCAAACATGTTGGTGATTATATGATGCTATGTGCTCAACATA
TTTGATTAAGTGAATATGATAAGCAAATTTACTTAAATAAATGGAATGTGTGTTTATGTACATCT
GCTTGAATAAGTGAAATCAGTACGTTCATATGATAGAATCTTATGTTTAATTGTTAAATTAAAGA
TAATAAGATATTTTGTTTTATGTTTTTACTATTAAACCATGAATATTATAATAGCATGAAAATTG
AATTGGAAGATTAAATTGAATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAAT
CGACAAAAAAAACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATAT
ATGGGATATGGCATTGGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATA
TGTAAATATGTGTAAGACCATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAA
GACGTTCTCTAATTAAATAAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTATA
TATTAATATTGAGCTCGAGTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCAT
AATACATAAATGTGTTAATTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGAT
AAATGCAAAGTCATATATATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCA
CCCCCTCATTAGTATTGTTTT
Found at i:35886073 original size:636 final size:635
Alignment explanation
Indices: 35884888--35886159 Score: 2517
Period size: 636 Copynumber: 2.0 Consensus size: 635
35884878 GATTAAATTG
35884888 AATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAATCGACAAAAAAAACCATGG
1 AATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAATCGACAAAAAAAACCATGG
35884953 TTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATATATGGGATATGGCATTGGT
66 TTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATATATGGGATATGGCATTGGT
35885018 GTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATATGTAAATATGTGTAAGAC
131 GTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATATGTAAATATGTGTAAGAC
35885083 CATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAAGACGTTCTCTAATTAAAT
196 CATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAAGACGTTCTCTAATTAAAT
* *
35885148 AAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTATATATTAATATTGAGCTCGA
261 AAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTAGATATTAATATTGAGCTCAA
35885213 GTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCATAATACATAAATGTGTTAA
326 GTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCATAATACATAAATGTGTTAA
35885278 TTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGATAAATGCAAAGTCATATAT
391 TTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGATAAATGCAAAGTCATATAT
35885343 ATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCACCCCCTCATTAGTATTGT
456 ATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCACCCCCTCATTAGTATTGT
35885408 TTTATGACGAAAATTATCTTGATGAGACAGATATGTTTTTCAACTGAGTTAATTCTGACAATATA
521 TTTATGACGAAAATTATCTTGATGAGACAGATATGTTTTTCAACTGAGTTAATTCTGACAATATA
35885473 GAAGTAAACACTTAAATGTTTGAGTGAAAATGTATTGATTATGAGTTGAA
586 GAAGTAAACACTTAAATGTTTGAGTGAAAATGTATTGATTATGAGTTGAA
35885523 ANATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAATCGACAAAAAAAACCATG
1 A-ATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAATCGACAAAAAAAACCATG
35885588 GTTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATATATGGGATATGGCATTGG
65 GTTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATATATGGGATATGGCATTGG
35885653 TGTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATATGTAAATATGTGTAAGA
130 TGTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATATGTAAATATGTGTAAGA
35885718 CCATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAAGACGTTCTCTAATTAAA
195 CCATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAAGACGTTCTCTAATTAAA
35885783 TAAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTAGATATTAATATTGAGCTCA
260 TAAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTAGATATTAATATTGAGCTCA
35885848 AGTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCATAATACATAAATGTGTTA
325 AGTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCATAATACATAAATGTGTTA
35885913 ATTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGATAAATGCAAAGTCATATA
390 ATTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGATAAATGCAAAGTCATATA
35885978 TATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCACCCCCTCATTAGTATTG
455 TATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCACCCCCTCATTAGTATTG
35886043 TTTTATGACGAAAATTATCTTGATGAGACAGATATGTTTTTCAACTGAGTTAATTCTGACAATAT
520 TTTTATGACGAAAATTATCTTGATGAGACAGATATGTTTTTCAACTGAGTTAATTCTGACAATAT
35886108 AGAAGTAAACACTTAAATGTTTGAGTGAAAATGTATTGATTATGAGTTGAA
585 AGAAGTAAACACTTAAATGTTTGAGTGAAAATGTATTGATTATGAGTTGAA
35886159 A
1 A
35886160 CTCATAAAGG
Statistics
Matches: 634, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
635 1 0.00
636 633 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (635 bp):
AATAGAACGCAAGAATGAGTACTTTCGTTCAGTGATATGTAATGAATCGACAAAAAAAACCATGG
TTGGACCATGGCAACATGTGATATGTGATTTCCGTATAAGACCATATATGGGATATGGCATTGGT
GTGATATGTGCTACTGTGTAAGACCATAGCTGGCTATGGCATCAATATGTAAATATGTGTAAGAC
CATAGTTGGACTATGGCATAGAGAAAACGAAGTACTCAATTTTGTAAGACGTTCTCTAATTAAAT
AAATGTCGGTAAGTAAAATGGAAGCTAAGTATTGGAATTTAATTAGATATTAATATTGAGCTCAA
GTAAGTAAATTCATTGTGTGAAATTGTGGGTGACAGAAAATATTCATAATACATAAATGTGTTAA
TTTGCTTGGAATGAATTACGTGGTTATGATGGCATTACATTGATGATAAATGCAAAGTCATATAT
ATATGTATTTGTGAGAGCAAGTTAAAAGCTTTATGACCTCAACATCACCCCCTCATTAGTATTGT
TTTATGACGAAAATTATCTTGATGAGACAGATATGTTTTTCAACTGAGTTAATTCTGACAATATA
GAAGTAAACACTTAAATGTTTGAGTGAAAATGTATTGATTATGAGTTGAA
Found at i:35889035 original size:42 final size:42
Alignment explanation
Indices: 35888984--35889222 Score: 218
Period size: 42 Copynumber: 5.6 Consensus size: 42
35888974 AAATTCTCTG
* * *
35888984 AGGGGTTGCTAAGTGCTGATTCC-CCGAATTATTGATTCTGG
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATTATTGATTATGA
* *
35889025 AGGTGGTTGCTAAGTGCTGATTCCATCGTA-TATTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCCACCGTATTA-TTGATTATG-A
* * * * *
35889069 AGGGGTTGCTATGTGCTGATTCC-CCGTATCACTGAATATAA
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATTATTGATTATGA
* *
35889110 AGGTGGTTGCTAAGTGCTGATTCCATCGTA-TATTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCCACCGTATTA-TTGATTATG-A
* * * * *
35889154 AGGGGTTGCTATGTGCTGATTCC-CCGTATCACTGAATATAA
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATTATTGATTATGA
*
35889195 AGGTGGTTGCTAAGTGCTGAATCCACCG
1 AGG-GGTTGCTAAGTGCTGATTCCACCG
35889223 AGTAACAGAT
Statistics
Matches: 159, Mismatches: 27, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
41 11 0.07
42 78 0.49
43 63 0.40
44 7 0.04
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (42 bp):
AGGGGTTGCTAAGTGCTGATTCCACCGTATTATTGATTATGA
Found at i:35889127 original size:85 final size:85
Alignment explanation
Indices: 35888984--35889219 Score: 391
Period size: 85 Copynumber: 2.8 Consensus size: 85
35888974 AAATTCTCTG
* * * * * * **
35888984 AGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGATTCTGGAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
35889049 ATCGTATATTTGATTGTGAA
66 ATCGTATATTTGATTGTGAA
35889069 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
35889134 ATCGTATATTTGATTGTGAA
66 ATCGTATATTTGATTGTGAA
*
35889154 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGAATCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
35889219 A
66 A
35889220 CCGAGTAACA
Statistics
Matches: 142, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 142 1.00
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (85 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
ATCGTATATTTGATTGTGAA
Found at i:35890490 original size:15 final size:14
Alignment explanation
Indices: 35890461--35890497 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
35890451 CGACCATTAT
35890461 TTATTTA-TTTTAA
1 TTATTTATTTTTAA
35890474 TTATTTATTTGTTAA
1 TTATTTATTT-TTAA
35890489 TTA-TTATTT
1 TTATTTATTT
35890498 AAATATCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.32
14 8 0.36
15 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (14 bp):
TTATTTATTTTTAA
Found at i:35890809 original size:75 final size:71
Alignment explanation
Indices: 35890730--35890866 Score: 166
Period size: 71 Copynumber: 1.9 Consensus size: 71
35890720 TTGGTATATC
* * *
35890730 CAACTAGTGATGGGCACACATAAATATCGTCAGTTTATCCGACTAGCACAGGGCACAAAACATTG
1 CAACTAGTGATGAGCACAC-T---TATCATCAGTCTATCCGACTAGCACAGGGCACAAAACATTG
35890795 TCGATTCGTT
62 TCGATTCGTT
* * * * *
35890805 CAACTAGTGCTGAGCACACTTATCATCGGTCTATCCGACTAGCGCGGGGCACAAAACTTTGT
1 CAACTAGTGATGAGCACACTTATCATCAGTCTATCCGACTAGCACAGGGCACAAAACATTGT
35890867 TACGGTTTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
71 36 0.67
74 1 0.02
75 17 0.31
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (71 bp):
CAACTAGTGATGAGCACACTTATCATCAGTCTATCCGACTAGCACAGGGCACAAAACATTGTCGA
TTCGTT
Found at i:35891681 original size:24 final size:24
Alignment explanation
Indices: 35891650--35891695 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
35891640 GGTTATTTGC
35891650 GTTGCACATGGCC-TGAGACACGG
1 GTTGCACATGGCCATGAGACACGG
*
35891673 GTTGTCACATGGCCATGTGACAC
1 GTTG-CACATGGCCATGAGACAC
35891696 ACATGGCCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 9 0.45
25 7 0.35
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (24 bp):
GTTGCACATGGCCATGAGACACGG
Found at i:35902187 original size:41 final size:41
Alignment explanation
Indices: 35902121--35902229 Score: 130
Period size: 41 Copynumber: 2.7 Consensus size: 41
35902111 TTTAGGCTTA
* * * **
35902121 AAGTCTAGTAGGCTTAAGGCCGGTGATGTAATTCGGACTTT
1 AAGTCCAGCAGGCTTAATGCCGGTGAAATAATTCGGACTTT
*
35902162 ATGTCCAGCAGGCTTAATGCCGGTGAAATAATTCGGACTTT
1 AAGTCCAGCAGGCTTAATGCCGGTGAAATAATTCGGACTTT
* *
35902203 AAGTCTAGCAGG-TTAATTGCCGATGAA
1 AAGTCCAGCAGGCTTAA-TGCCGGTGAA
35902230 TTGAATCAGG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 4 0.07
41 54 0.93
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (41 bp):
AAGTCCAGCAGGCTTAATGCCGGTGAAATAATTCGGACTTT
Found at i:35906021 original size:21 final size:21
Alignment explanation
Indices: 35905997--35906063 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
35905987 GTCATGAAGC
35905997 ATATACACTATGAAGATGAGA
1 ATATACACTATGAAGATGAGA
** * *
35906018 ATAT-CTGGTAT--ATATGCAGC
1 ATATAC-ACTATGAAGATG-AGA
35906038 ATATACACTATGAAGATGAGA
1 ATATACACTATGAAGATGAGA
35906059 ATATA
1 ATATA
35906064 TATTAATATA
Statistics
Matches: 33, Mismatches: 8, Indels: 10
0.65 0.16 0.20
Matches are distributed among these distances:
19 4 0.12
20 10 0.30
21 15 0.45
22 4 0.12
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.28
Consensus pattern (21 bp):
ATATACACTATGAAGATGAGA
Found at i:35912138 original size:18 final size:17
Alignment explanation
Indices: 35912115--35912153 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
35912105 CTCTTTTTGC
35912115 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
35912133 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
35912151 TCT
1 TCT
35912154 GTCTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:35917179 original size:41 final size:41
Alignment explanation
Indices: 35917106--35917214 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 41
35917096 TTCAGGCCTA
* * ** **
35917106 AAGTCTAGCAGGCTTAAGGCCGATGATGTAATTTGGACTTT
1 AAGTCCAGCAGGCTTAATGCCGATGAAATAATTCAGACTTT
* *
35917147 ATGTCCAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTT
1 AAGTCCAGCAGGCTTAATGCCGATGAAATAATTCAGACTTT
* *
35917188 AAGTCTAGTAGGC-TAATTGCCGATGAA
1 AAGTCCAGCAGGCTTAA-TGCCGATGAA
35917215 TTGAATCAGA
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (41 bp):
AAGTCCAGCAGGCTTAATGCCGATGAAATAATTCAGACTTT
Found at i:35918778 original size:31 final size:29
Alignment explanation
Indices: 35918717--35918779 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 29
35918707 TTGAACTAAA
*
35918717 TTTATGAATCATTTTGAATTTTAGTTATT
1 TTTATGAATAATTTTGAATTTTAGTTATT
*
35918746 TTTAT-AATAATTTTGCATATTTTGGTCTATT
1 TTTATGAATAATTTTG-A-ATTTTAGT-TATT
35918777 TTT
1 TTT
35918780 TACAGTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 9 0.31
29 6 0.21
30 7 0.24
31 7 0.24
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (29 bp):
TTTATGAATAATTTTGAATTTTAGTTATT
Found at i:35919580 original size:33 final size:33
Alignment explanation
Indices: 35919542--35919608 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
35919532 TTTCTTGTTC
* *
35919542 AATCAACTAATCGGTACCTAGTAGGATCTTTCA
1 AATCAACTAATCGATACCCAGTAGGATCTTTCA
* * *
35919575 AATCAACTAGTTGATACCCCGTAGGATCTTTCA
1 AATCAACTAATCGATACCCAGTAGGATCTTTCA
35919608 A
1 A
35919609 TCTTCCACTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (33 bp):
AATCAACTAATCGATACCCAGTAGGATCTTTCA
Found at i:35921041 original size:27 final size:27
Alignment explanation
Indices: 35921011--35921368 Score: 216
Period size: 27 Copynumber: 13.3 Consensus size: 27
35921001 TATAACAGTT
* *
35921011 ATTTTACACTATAGGGTTATTTCAATC
1 ATTTTACCCTATAGGGTTATTTCGATC
*
35921038 ATTTTACCCTATGGGGGTT-TTTCGATC
1 ATTTTACCCTAT-AGGGTTATTTCGATC
* *
35921065 ATTCTACCCTA-ATGGGGTATTTC-AGTC
1 ATTTTACCCTATA-GGGTTATTTCGA-TC
* *
35921092 ATTTTACCATATGAGGG-TATTTTGATC
1 ATTTTACCCTAT-AGGGTTATTTCGATC
* *
35921119 ATTTTACGCTAT-GGGTGTATTTCGGTC
1 ATTTTACCCTATAGGGT-TATTTCGATC
* * *
35921146 ATTCTACCCTATAGGGGTATTTCGGTC
1 ATTTTACCCTATAGGGTTATTTCGATC
* * *
35921173 ATTCTACCCTATGAGAG-TATTTCGGTC
1 ATTTTACCCTAT-AGGGTTATTTCGATC
*** * * *
35921200 ATTTTATAATATGAAGG-TATTTTGGTC
1 ATTTTACCCTAT-AGGGTTATTTCGATC
* * * *
35921227 ATTCTACCATATGAGGG-TATTTTGGTC
1 ATTTTACCCTAT-AGGGTTATTTCGATC
* *
35921254 ATTTTATCCTATAAGGG-TATTTCGGTC
1 ATTTTACCCTAT-AGGGTTATTTCGATC
* * *
35921281 ATTTTACCCTATAGGGGTATTTCGGTT
1 ATTTTACCCTATAGGGTTATTTCGATC
* *
35921308 ATTTTACCCTATGAGGG-TATTTTGGTC
1 ATTTTACCCTAT-AGGGTTATTTCGATC
* * * * *
35921335 ATTTTA-CTTTTAGGGGTATTTTGGTC
1 ATTTTACCCTATAGGGTTATTTCGATC
35921361 ATTTTACC
1 ATTTTACC
35921369 TATTTTGGGG
Statistics
Matches: 277, Mismatches: 39, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
25 7 0.03
26 28 0.10
27 222 0.80
28 19 0.07
29 1 0.00
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTATAGGGTTATTTCGATC
Found at i:35921086 original size:54 final size:54
Alignment explanation
Indices: 35921036--35921368 Score: 340
Period size: 54 Copynumber: 6.2 Consensus size: 54
35921026 GTTATTTCAA
* * *
35921036 TCATTTTACCCTATGGGGGT-TTTTCGATCATTCTACCCTAATGGGGTATTTCAG
1 TCATTTTACCCTATGAGGGTATTTTCGGTCATTCTACCCT-ATGGGGTATTTCGG
* * * *
35921090 TCATTTTACCATATGAGGGTATTTT-GATCATTTTACGCTATGGGTGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTTCGGTCATTCTACCCTATGGG-GTATTTCGG
* *
35921144 TCATTCTACCCTAT-AGGGGTA-TTTCGGTCATTCTACCCTATGAGAGTATTTCGG
1 TCATTTTACCCTATGA-GGGTATTTTCGGTCATTCTACCCTATG-GGGTATTTCGG
*** * * *
35921198 TCATTTTATAATATGAAGGTATTTT-GGTCATTCTACCATATGAGGGTATTTTGG
1 TCATTTTACCCTATGAGGGTATTTTCGGTCATTCTACCCTATG-GGGTATTTCGG
* * *
35921252 TCATTTTATCCTATAAGGGTA-TTTCGGTCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTTCGGTCATTCTACCCTAT-GGGGTATTTCGG
* * * * *
35921306 TTATTTTACCCTATGAGGGTATTTT-GGTCATTTTA-CTTTTAGGGGTATTTTGG
1 TCATTTTACCCTATGAGGGTATTTTCGGTCATTCTACCCTAT-GGGGTATTTCGG
35921359 TCATTTTACC
1 TCATTTTACC
35921369 TATTTTGGGG
Statistics
Matches: 236, Mismatches: 33, Indels: 21
0.81 0.11 0.07
Matches are distributed among these distances:
53 36 0.15
54 187 0.79
55 13 0.06
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (54 bp):
TCATTTTACCCTATGAGGGTATTTTCGGTCATTCTACCCTATGGGGTATTTCGG
Found at i:35921120 original size:81 final size:80
Alignment explanation
Indices: 35921011--35921368 Score: 373
Period size: 81 Copynumber: 4.4 Consensus size: 80
35921001 TATAACAGTT
** * *
35921011 ATTTTACACTAT-AGGGTTATTTCAATCATTTTACCCTATGGGGGTTTTTCGATCATTCTACCCT
1 ATTTTAC-CTATGAGGG-TATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCT
*
35921075 AATG-GGGTATTTCAGTC
64 -ATGAGGGTATTTCGGTC
* * * *
35921092 ATTTTACCATATGAGGGTATTTTGATCATTTTACGCTATGGGTGTATTTCGGTCATTCTACCCTA
1 ATTTTACC-TATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTA
35921157 T-AGGGGTATTTCGGTC
65 TGA-GGGTATTTCGGTC
* * *** ** * *
35921173 ATTCTACCCTATGAGAGTATTTCGGTCATTTTATAATATGAAGGTATTTTGGTCATTCTACCATA
1 ATTTTA-CCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTA
*
35921238 TGAGGGTATTTTGGTC
65 TGAGGGTATTTCGGTC
* * * *
35921254 ATTTTATCCTATAAGGGTATTTCGGTCATTTTACCCTATAGGGGTATTTCGGTTATTTTACCCTA
1 ATTTTA-CCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTA
*
35921319 TGAGGGTATTTTGGTC
65 TGAGGGTATTTCGGTC
* * *
35921335 ATTTTA-CTTTTAGGGGTATTTTGGTCATTTTACC
1 ATTTTACCTATGA-GGGTATTTCGGTCATTTTACC
35921369 TATTTTGGGG
Statistics
Matches: 233, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
79 4 0.02
80 23 0.10
81 199 0.85
82 7 0.03
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (80 bp):
ATTTTACCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTAT
GAGGGTATTTCGGTC
Found at i:35926748 original size:21 final size:22
Alignment explanation
Indices: 35926712--35926754 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
35926702 CTTAAGAATG
*
35926712 TCTTCAGGTGTGTGTCATGACA
1 TCTTCAGGTCTGTGTCATGACA
*
35926734 TCTTCAGG-CTGTGTCGTGACA
1 TCTTCAGGTCTGTGTCATGACA
35926755 CCGAAGTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.16, C:0.21, G:0.28, T:0.35
Consensus pattern (22 bp):
TCTTCAGGTCTGTGTCATGACA
Found at i:35932085 original size:25 final size:27
Alignment explanation
Indices: 35932051--35932103 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 27
35932041 TCTTCAGGAG
35932051 AATATAAGTGCTCA-CAAGGT-ATAAA
1 AATATAAGTGCTCATCAAGGTAATAAA
* *
35932076 AATATAAGTGGTTATCAAGGTAATAAA
1 AATATAAGTGCTCATCAAGGTAATAAA
35932103 A
1 A
35932104 TTCAATGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 12 0.50
26 6 0.25
27 6 0.25
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.26
Consensus pattern (27 bp):
AATATAAGTGCTCATCAAGGTAATAAA
Found at i:35947439 original size:16 final size:16
Alignment explanation
Indices: 35947418--35947449 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35947408 GTTTTGTTGC
*
35947418 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
35947434 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
35947450 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:35947740 original size:51 final size:50
Alignment explanation
Indices: 35947677--35947867 Score: 226
Period size: 51 Copynumber: 3.8 Consensus size: 50
35947667 CCGGTTCACA
* *
35947677 TAGTAGCTTGCACATAGTACTACACATGTGACCATCACTACCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCG-TACACG
* * * *
35947728 TAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATCA-CTATCC-GTACACG
* * * *
35947779 TAGTAGCCTGTACATAGTACTACACCTGCGACCTATCACT-TTCGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTATCCGTACACG
35947829 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
35947868 TTCACTTTCA
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
49 6 0.05
50 37 0.32
51 68 0.58
52 5 0.04
53 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGTACACG
Found at i:35947842 original size:101 final size:102
Alignment explanation
Indices: 35947675--35947859 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
35947665 TACCGGTTCA
* *
35947675 CATAGTAGCTTGCACATAGTACTACACATGTGACCATCACTACCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTACCCGATACACGTAGTAGCCTGCA
35947740 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* * **
35947777 CATAGTAGCCTGTACATAGTACTACACCTGCGACCTATCACT-TTCG-TACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTACCCGATACACGTAGTAGCCTGC
*
35947840 ACATAGTACTACACATGTGA
65 ACATAGTACTACACACGTGA
35947860 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 36 0.48
102 33 0.44
103 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTACCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:35947883 original size:101 final size:102
Alignment explanation
Indices: 35947667--35947859 Score: 273
Period size: 102 Copynumber: 1.9 Consensus size: 102
35947657 ATTAATGATA
* *
35947667 CCGGTTCACATAGTAGCTTGCACATAGTACTACACATGTGACCATCACTACCCGATACACGTAGT
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTACCCGATACACGTAGT
*
35947732 AGCCTGCACATAGTACTACACACGTGATCGAAGCTAT
66 AGCCTGCACATAGTACTACACACGTGATCCAAGCTAT
* * * * **
35947769 CCGGTACGCATAGTAGCCTGTACATAGTACTACACCTGCGACCTATCACT-TTCG-TACACGTAG
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTACCCGATACACGTAG
*
35947832 TAGCCTGCACATAGTACTACACATGTGA
65 TAGCCTGCACATAGTACTACACACGTGA
35947860 CCATCACTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 36 0.44
102 39 0.48
103 6 0.07
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (102 bp):
CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTACCCGATACACGTAGT
AGCCTGCACATAGTACTACACACGTGATCCAAGCTAT
Found at i:35948865 original size:184 final size:184
Alignment explanation
Indices: 35948556--35948925 Score: 740
Period size: 184 Copynumber: 2.0 Consensus size: 184
35948546 GCTGATTTCG
35948556 TTAACCATGGAGAAGATGGACAAATTTTTAGCTATTTTGGCCTGTTTAATTCTTTTAATTACTAA
1 TTAACCATGGAGAAGATGGACAAATTTTTAGCTATTTTGGCCTGTTTAATTCTTTTAATTACTAA
35948621 ATGACCAAAATGCCCCAAACTTAAAAATTTCCTATTTCACTTATCTCTTATCCATTTTCTTCCAA
66 ATGACCAAAATGCCCCAAACTTAAAAATTTCCTATTTCACTTATCTCTTATCCATTTTCTTCCAA
35948686 AAACCAATGGTCTAATTACCATTTAAGGACTTCCAATTTAAAATTTCATAACAA
131 AAACCAATGGTCTAATTACCATTTAAGGACTTCCAATTTAAAATTTCATAACAA
35948740 TTAACCATGGAGAAGATGGACAAATTTTTAGCTATTTTGGCCTGTTTAATTCTTTTAATTACTAA
1 TTAACCATGGAGAAGATGGACAAATTTTTAGCTATTTTGGCCTGTTTAATTCTTTTAATTACTAA
35948805 ATGACCAAAATGCCCCAAACTTAAAAATTTCCTATTTCACTTATCTCTTATCCATTTTCTTCCAA
66 ATGACCAAAATGCCCCAAACTTAAAAATTTCCTATTTCACTTATCTCTTATCCATTTTCTTCCAA
35948870 AAACCAATGGTCTAATTACCATTTAAGGACTTCCAATTTAAAATTTCATAACAA
131 AAACCAATGGTCTAATTACCATTTAAGGACTTCCAATTTAAAATTTCATAACAA
35948924 TT
1 TT
35948926 GGACACTTCT
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 186 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (184 bp):
TTAACCATGGAGAAGATGGACAAATTTTTAGCTATTTTGGCCTGTTTAATTCTTTTAATTACTAA
ATGACCAAAATGCCCCAAACTTAAAAATTTCCTATTTCACTTATCTCTTATCCATTTTCTTCCAA
AAACCAATGGTCTAATTACCATTTAAGGACTTCCAATTTAAAATTTCATAACAA
Found at i:35955836 original size:17 final size:18
Alignment explanation
Indices: 35955814--35955849 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
35955804 CTAAAATTTT
*
35955814 ATATTT-ATATTTTTTAA
1 ATATTTCATATATTTTAA
35955831 ATATTTCATATATTTTAA
1 ATATTTCATATATTTTAA
35955849 A
1 A
35955850 AAAATTCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
ATATTTCATATATTTTAA
Found at i:35956200 original size:43 final size:43
Alignment explanation
Indices: 35956083--35956200 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 43
35956073 GTGGGAAAAT
* * * * *
35956083 GCCGCTATAAAACATGATTTTTAGCGGCGCTTTTCATACAAAC
1 GCCGCTTTAGAACATGATATTTAACGGCACTTTTCATACAAAC
** * *
35956126 GCCGCTTTAGAACATGATATTTAACAACACTTTTCCTACAAAT
1 GCCGCTTTAGAACATGATATTTAACGGCACTTTTCATACAAAC
* * *
35956169 GCTG-TTGTAGAATATGATCTTTAACGGCACTT
1 GCCGCTT-TAGAACATGATATTTAACGGCACTT
35956201 GTATGAAGAA
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 2 0.03
43 58 0.97
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (43 bp):
GCCGCTTTAGAACATGATATTTAACGGCACTTTTCATACAAAC
Found at i:35956301 original size:43 final size:43
Alignment explanation
Indices: 35956247--35956352 Score: 160
Period size: 43 Copynumber: 2.5 Consensus size: 43
35956237 AAACGATGCA
*
35956247 AAAGATCATGTTCTTTAGCGGCGTTTGTAGTAAAAG-ATCCGCT
1 AAAGATCATGTTCTATAGCGGCGTTTGTAGTAAAAGCAT-CGCT
* * *
35956290 AAAGATTATGTTCTATAGCGGCGTTTTTAGTAAAAGCATCGTT
1 AAAGATCATGTTCTATAGCGGCGTTTGTAGTAAAAGCATCGCT
35956333 AAAGATCATGTTCTATAGCG
1 AAAGATCATGTTCTATAGCG
35956353 ACATTTGTGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 55 0.96
44 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (43 bp):
AAAGATCATGTTCTATAGCGGCGTTTGTAGTAAAAGCATCGCT
Found at i:35962192 original size:16 final size:16
Alignment explanation
Indices: 35962172--35962202 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
35962162 ATAACAATAT
35962172 TTTTTTATAT-ACAAG
1 TTTTTTATATGACAAG
35962187 TTTTTTATATGACAAG
1 TTTTTTATATGACAAG
35962203 AAATAGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (16 bp):
TTTTTTATATGACAAG
Found at i:35967447 original size:6 final size:7
Alignment explanation
Indices: 35967432--35967458 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
35967422 TTTTTGTCCA
35967432 TTTTATT
1 TTTTATT
35967439 TTTTATT
1 TTTTATT
35967446 TTTTATT
1 TTTTATT
35967453 TTTTAT
1 TTTTAT
35967459 ATCCTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:35972602 original size:26 final size:26
Alignment explanation
Indices: 35972564--35972632 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
35972554 TTTACATTAT
* *
35972564 TACTCACACGAGCTGTGAAATGTGCC
1 TACTCACAAGAGCTGTGAAATGGGCC
*
35972590 TACTCACAAGAGCTATGAAATGGGCC
1 TACTCACAAGAGCTGTGAAATGGGCC
*
35972616 TGCTCACAAGAGCTGTG
1 TACTCACAAGAGCTGTG
35972633 GGTCAGAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.22
Consensus pattern (26 bp):
TACTCACAAGAGCTGTGAAATGGGCC
Found at i:35976709 original size:25 final size:25
Alignment explanation
Indices: 35976661--35976722 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
35976651 CAGGTAAGGC
* *
35976661 TCCTTCTTCTTCTTCCGTTTTTCAT
1 TCCTTCTTCTTCTTACGTTCTTCAT
* *
35976686 TCCTTTTTCTTCTTATGTTCTTCA-
1 TCCTTCTTCTTCTTACGTTCTTCAT
35976710 T-CTTC-TCTTCTTA
1 TCCTTCTTCTTCTTA
35976723 GCATATTCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
22 8 0.25
23 3 0.09
24 1 0.03
25 20 0.62
ACGTcount: A:0.06, C:0.29, G:0.03, T:0.61
Consensus pattern (25 bp):
TCCTTCTTCTTCTTACGTTCTTCAT
Found at i:35979007 original size:15 final size:15
Alignment explanation
Indices: 35978968--35979020 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 15
35978958 GAACATTTGG
35978968 AATTTAATTAGATAAAA
1 AATTT-ATTA-ATAAAA
35978985 AACTTTTATTAATAAAA
1 AA--TTTATTAATAAAA
*
35979002 AATTTATTTATAAATA
1 AATTTATTAATAAA-A
35979018 AAT
1 AAT
35979021 CATTGGAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 10 0.31
18 4 0.12
19 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AATTTATTAATAAAA
Found at i:35979094 original size:22 final size:20
Alignment explanation
Indices: 35979051--35979089 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
35979041 TAATTTAAAA
35979051 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
35979071 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
35979090 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:35979213 original size:20 final size:20
Alignment explanation
Indices: 35979188--35979227 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
35979178 AATATTTTAC
*
35979188 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
35979208 AGTAAAACATTTTTCAGAAA
1 AGTAAAACATTTTACAGAAA
35979228 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:35979229 original size:34 final size:35
Alignment explanation
Indices: 35979176--35979242 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
35979166 CAAACACTAG
*
35979176 AAAATATTTTACAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTACAGTAAATCATTTTACAGAAAAGT
* *
35979211 AAAACATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTACAGTAAATCATTTTACAGAAAA
35979243 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTACAGTAAATCATTTTACAGAAAAGT
Found at i:35979234 original size:14 final size:14
Alignment explanation
Indices: 35979211--35979250 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
35979201 ACAGAAAAGT
*
35979211 AAAACATTTTTCAG
1 AAAACATTTTACAG
* *
35979225 AAATCATTTTACGG
1 AAAACATTTTACAG
35979239 AAAACATTTTAC
1 AAAACATTTTAC
35979251 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:35993123 original size:20 final size:21
Alignment explanation
Indices: 35993098--35993136 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
35993088 TAATTCAAAT
*
35993098 TCAAATTATTATT-TTTAATA
1 TCAAATTATAATTATTTAATA
35993118 TCAAATTATAATTATTTAA
1 TCAAATTATAATTATTTAA
35993137 ATATGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (21 bp):
TCAAATTATAATTATTTAATA
Found at i:35993825 original size:26 final size:26
Alignment explanation
Indices: 35993785--35993835 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35993775 GAGTTGGACC
*
35993785 ATGTGAGGTTGAAACATGTTTTATTA
1 ATGTGAGGTTCAAACATGTTTTATTA
*
35993811 ATGTGGGGTTCAAACATGTTTTATT
1 ATGTGAGGTTCAAACATGTTTTATT
35993836 GTTGTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (26 bp):
ATGTGAGGTTCAAACATGTTTTATTA
Found at i:35995368 original size:18 final size:18
Alignment explanation
Indices: 35995332--35995369 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
35995322 CCAAAATCTT
*
35995332 ATTTTAATTCTTTTGTAC
1 ATTTTAATTCTTTTATAC
35995350 ATTTTAATT-TTATTATAC
1 ATTTTAATTCTT-TTATAC
35995368 AT
1 AT
35995370 ATTTTATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTTTAATTCTTTTATAC
Found at i:35996571 original size:22 final size:22
Alignment explanation
Indices: 35996546--35996594 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
35996536 TGTTTTCTCC
35996546 TTATTTTGCTACCATTTTGCTT-
1 TTATTTTGCTACCATTTTG-TTG
* * *
35996568 TTATGTTGTTACTATTTTGTTG
1 TTATTTTGCTACCATTTTGTTG
35996590 TTATT
1 TTATT
35996595 GTTTGGATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.14, C:0.10, G:0.12, T:0.63
Consensus pattern (22 bp):
TTATTTTGCTACCATTTTGTTG
Found at i:35996660 original size:30 final size:30
Alignment explanation
Indices: 35996626--35996685 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
35996616 TATTTTATTC
*
35996626 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGCTATTATTTTAAAGACATTTG
* *
35996656 TTAATTTTGCTATTATTTTAGAGGCATTTG
1 TTAATTTTGCTATTATTTTAAAGACATTTG
35996686 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.55
Consensus pattern (30 bp):
TTAATTTTGCTATTATTTTAAAGACATTTG
Found at i:35997930 original size:21 final size:21
Alignment explanation
Indices: 35997906--35997946 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
35997896 ATCTATAGAC
35997906 TCTAAAGACTAAACCTTAAAA
1 TCTAAAGACTAAACCTTAAAA
* * *
35997927 TCTAAATATTAAATCTTAAA
1 TCTAAAGACTAAACCTTAAA
35997947 TTTTATCCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (21 bp):
TCTAAAGACTAAACCTTAAAA
Found at i:35998314 original size:39 final size:39
Alignment explanation
Indices: 35998271--35998355 Score: 88
Period size: 39 Copynumber: 2.2 Consensus size: 39
35998261 AATCATCTCA
*
35998271 ATATAATTT-TATAAAATATAATTT-AAATTTATAAAGAAT
1 ATATAATTTATATAAAA-ACAATTTAAAATTT-TAAAGAAT
* *
35998310 ATAT-ATTTATATATAAACAATTTGAAAATTTTAAAGATT
1 ATATAATTTATATAAAAACAATTT-AAAATTTTAAAGAAT
35998349 A-ATAATT
1 ATATAATT
35998356 CTATGCCAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
38 12 0.31
39 21 0.54
40 6 0.15
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.44
Consensus pattern (39 bp):
ATATAATTTATATAAAAACAATTTAAAATTTTAAAGAAT
Found at i:36009804 original size:110 final size:112
Alignment explanation
Indices: 36009638--36009852 Score: 276
Period size: 116 Copynumber: 1.9 Consensus size: 112
36009628 AATTGATGTA
* * * * *
36009638 GAAAACTTGAAATTGATATTGATATTGAATACAAAGTAATTGAAACATATTTAATA-TAT-A-TT
1 GAAAACTTGAAACTGAAATTGATATTGAATACAAAGTAACTGAAAAATATTAAATATTATAAGTT
* *
36009700 TTTTAAATTTTATATAAAGGACATACATTTTGTAACTTAAGCTAGTG
66 TTTTAAATTTAATATAAAGGACATAAATTTTGTAACTTAAGCTAGTG
*
36009747 GAAAA-TTGAAACTGAAATTGATATTGAATATACAAAGTAACTGAAAAATATTAAATATTTTTGT
1 GAAAACTTGAAACTGAAATTGATATTG-A-ATACAAAGTAACTGAAAAATATTAAATA---TTAT
*
36009811 AAGTTTTTTTAATTTAATATAAAGGACATAAATTTTGTAACT
61 AAGTTTTTTAAATTTAATATAAAGGACATAAATTTTGTAACT
36009853 CAAGTAAGTT
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
108 19 0.21
109 6 0.07
110 25 0.28
114 2 0.02
115 1 0.01
116 36 0.40
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.39
Consensus pattern (112 bp):
GAAAACTTGAAACTGAAATTGATATTGAATACAAAGTAACTGAAAAATATTAAATATTATAAGTT
TTTTAAATTTAATATAAAGGACATAAATTTTGTAACTTAAGCTAGTG
Found at i:36011867 original size:14 final size:13
Alignment explanation
Indices: 36011838--36011881 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
36011828 GTTTGTTTCG
36011838 ATTTTTTATATTA
1 ATTTTTTATATTA
*
36011851 ATTTTTTATTTTA
1 ATTTTTTATATTA
* * *
36011864 AATTTTTAAATTT
1 ATTTTTTATATTA
36011877 ATTTT
1 ATTTT
36011882 GATAAAATGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTTTTATATTA
Found at i:36011929 original size:40 final size:39
Alignment explanation
Indices: 36011854--36011929 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 39
36011844 TATATTAATT
* * *
36011854 TTTTATTTTAAATTTTTAAATTTATTTTGATAAAATGAA
1 TTTTATTTTAAACTTTTAAATTTATTTTAAAAAAATGAA
*
36011893 TTTTGTTTTATAACTTTTAAATATTA-TTTAAAAAAAT
1 TTTTATTTTA-AACTTTTAAAT-TTATTTTAAAAAAAT
36011930 TTCAATGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
39 9 0.29
40 19 0.61
41 3 0.10
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (39 bp):
TTTTATTTTAAACTTTTAAATTTATTTTAAAAAAATGAA
Found at i:36012878 original size:21 final size:20
Alignment explanation
Indices: 36012837--36012878 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
36012827 TTTTATTAGT
*
36012837 ATTAAAATTTATTTGGCATC
1 ATTAAAATTAATTTGGCATC
*
36012857 ATTAAAATTAAGTTTTGCATC
1 ATTAAAATTAA-TTTGGCATC
36012878 A
1 A
36012879 AAATATTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (20 bp):
ATTAAAATTAATTTGGCATC
Found at i:36018081 original size:49 final size:50
Alignment explanation
Indices: 36018017--36018292 Score: 178
Period size: 50 Copynumber: 5.4 Consensus size: 50
36018007 CAAAGCTATG
* * * *
36018017 TCCCAAACATAGTCTTACATGAGATGTT-TCTTGTA-CTGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGAGA-GTTCTCATATAGCTGCCAATGCCATA
* * * * *
36018066 TCCCAGATATGGTCTTACATGGGAGTTCTCATATAGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
** * ** * * * * *
36018116 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
* ** * * * * *
36018166 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
* * ** * *
36018216 TCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCAT-A--T--A-GCTGCCAATGCCATA
36018272 TCCCAGACATGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
36018293 GGATCTCTTT
Statistics
Matches: 193, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
48 3 0.02
49 25 0.13
50 131 0.68
53 1 0.01
56 33 0.17
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGCCATA
Found at i:36018120 original size:50 final size:50
Alignment explanation
Indices: 36018053--36018300 Score: 298
Period size: 50 Copynumber: 4.8 Consensus size: 50
36018043 TTTCTTGTAC
* * **
36018053 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* ** * *
36018103 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * *
36018153 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * *
36018203 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GG
*
36018259 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36018301 TTACCCAAAT
Statistics
Matches: 172, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
50 131 0.76
53 1 0.01
56 40 0.23
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:36018416 original size:13 final size:13
Alignment explanation
Indices: 36018395--36018426 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36018385 GCTTGGATCA
*
36018395 TCATCAAATAAAT
1 TCATAAAATAAAT
36018408 TCATAAAATAAAT
1 TCATAAAATAAAT
36018421 TCATAA
1 TCATAA
36018427 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:36018673 original size:30 final size:30
Alignment explanation
Indices: 36018638--36018695 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36018628 CCTCGACTCT
*
36018638 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
36018668 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
36018696 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:36025741 original size:50 final size:50
Alignment explanation
Indices: 36025668--36025905 Score: 199
Period size: 50 Copynumber: 4.7 Consensus size: 50
36025658 TCTTGTACTA
* * ** * *
36025668 CCAATGCCATATCCCAGATATGGTCTTACATGGAAGTTCTCTTATAGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTAGGTG
* * ** * *
36025718 CCCATGTCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTAGGTG
* * * *
36025768 CCAACGCCATGTCCTAGACATGGT-TTACATGGGACCTCTCATCTTGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTAGGTG
* * * * * *
36025817 CCAATGCCTTGTCCCAGACATAGTCTTACATGGGACCTTTCATAATCTCAATGATA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGAACC--TC-TCATCT--A-GGTG
* *
36025873 CCAATGCTATGTCCCAGACATGGTCGTACATGG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGG
36025906 GATCTCATCC
Statistics
Matches: 150, Mismatches: 31, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
49 42 0.28
50 70 0.47
52 2 0.01
53 5 0.03
56 31 0.21
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTAGGTG
Found at i:36025796 original size:99 final size:100
Alignment explanation
Indices: 36025668--36025859 Score: 224
Period size: 99 Copynumber: 1.9 Consensus size: 100
36025658 TCTTGTACTA
* * ** * * *
36025668 CCAATGCCATATCCCAGATATGGTCTTACATGGAAGTTCTCTTATAGGTGCCCATGTCATGTCCC
1 CCAACGCCATATCCCAGACATGGTCTTACATGGAACCTCTCATATAGGTGCCAATGCCATGTCCC
* *
36025733 AGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
66 AGACATAGTCTTACAGGGGACCTCTCATCTCGGTG
* * * * * *
36025768 CCAACGCCATGTCCTAGACATGGT-TTACATGGGACCTCTCATCTTGGTGCCAATGCCTTGTCCC
1 CCAACGCCATATCCCAGACATGGTCTTACATGGAACCTCTCATATAGGTGCCAATGCCATGTCCC
* *
36025832 AGACATAGTCTTACATGGGACCTTTCAT
66 AGACATAGTCTTACAGGGGACCTCTCAT
36025860 AATCTCAATG
Statistics
Matches: 75, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
99 55 0.73
100 20 0.27
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (100 bp):
CCAACGCCATATCCCAGACATGGTCTTACATGGAACCTCTCATATAGGTGCCAATGCCATGTCCC
AGACATAGTCTTACAGGGGACCTCTCATCTCGGTG
Found at i:36032489 original size:52 final size:53
Alignment explanation
Indices: 36032369--36032519 Score: 137
Period size: 53 Copynumber: 2.9 Consensus size: 53
36032359 ACGTTAAAGG
* * * * * * * *
36032369 ACCATATTGTGTAAGACCGTAACTAGTG-GATTATTG-CATCTTTTGGAAAGAAG
1 ACCATATCGTATAAGACCATAACTGGTGAG-TTA-TGACATCATATGGAAAAAAA
* * * * * *
36032422 ACCATATTGTGTAAGACCATAATTGG-GGGTTGTGGCATCATATGGAAAAAAA
1 ACCATATCGTATAAGACCATAACTGGTGAGTTATGACATCATATGGAAAAAAA
36032474 ACCATATCGTATAAGACCATAACTGGTGAGTTATGACATCATATGG
1 ACCATATCGTATAAGACCATAACTGGTGAGTTATGACATCATATGG
36032520 GAAGGACTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
51 2 0.02
52 39 0.48
53 40 0.49
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (53 bp):
ACCATATCGTATAAGACCATAACTGGTGAGTTATGACATCATATGGAAAAAAA
Found at i:36032739 original size:57 final size:56
Alignment explanation
Indices: 36032644--36032821 Score: 180
Period size: 57 Copynumber: 3.1 Consensus size: 56
36032634 AAATAACAAC
* * * *
36032644 CTTTGTGGCAAAACTCTAGGAAGGTAAGCTTTTGTGGTGAACCTGTAAAAGGATAGT
1 CTTTGTGGAAAAACTCT-GGAAGGTAAGCCTTTGTGGTGAACCTATAAAAGGACAGT
* * *
36032701 CTTTGTGGAAAAAGTCTGGAATGGTAAGCCTTTATGGTGAACCTATTAAAGGACAGT
1 CTTTGTGGAAAAACTCTGGAA-GGTAAGCCTTTGTGGTGAACCTATAAAAGGACAGT
* * * * * * *
36032758 CTTTATGGTAAAACTCTAGAAAGGTAACCCTTTGTGGCGAACC-ATTTAAAGGAC-GC
1 CTTTGTGGAAAAACTCT-GGAAGGTAAGCCTTTGTGGTGAACCTA-TAAAAGGACAGT
36032814 CTTTGTGG
1 CTTTGTGG
36032822 TGAGACTCTA
Statistics
Matches: 102, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
56 13 0.13
57 86 0.84
58 3 0.03
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (56 bp):
CTTTGTGGAAAAACTCTGGAAGGTAAGCCTTTGTGGTGAACCTATAAAAGGACAGT
Found at i:36041062 original size:56 final size:56
Alignment explanation
Indices: 36040958--36041211 Score: 405
Period size: 56 Copynumber: 4.7 Consensus size: 56
36040948 GGTAAAGAAA
*
36040958 TCCCATGTAAGACCATGTCTGGGA-ATGGCATTGGCATCATTGAGATTATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
36041013 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
36041069 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
* * *
36041125 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-GATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
* *
36041175 TCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36041212 CCGAGATGAG
Statistics
Matches: 192, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
50 42 0.22
51 2 0.01
55 25 0.13
56 123 0.64
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (56 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
Found at i:36041154 original size:112 final size:106
Alignment explanation
Indices: 36040958--36041311 Score: 393
Period size: 100 Copynumber: 3.3 Consensus size: 106
36040948 GGTAAAGAAA
*
36040958 TCCCATGTAAGACCATGTCTGGGA-ATGGCATTGGCATCATTGAGATTATGAAAGGTCCCATGTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGGTCCCATGTA
*
36041022 AGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
66 AGACCATGTCTGGGACATGGCATTGGCA-C----AGA-GATGAAAGG
36041069 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGGTCCCATGTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGGTCCCATGTA
* *
36041134 AGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
66 AGACCATGTCTGGGACATGGCATTGGCACAGAGATGAAAGG
* * * * * *
36041175 TCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C----CGA-GATGAGAGGTGCCC-CGT
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGGT-CCCATGT
* * ** * *
36041233 AAGACCATGTCTGGGACATGGCATGGGCTCCTATATGAGAA-C
65 AAGACCATGTCTGGGACATGGCATTGGCACAGAGATGA-AAGG
* * * *
36041275 TCCCATGTAAGACCATATCTAGGATATGGAATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36041312 GTACAAGAAA
Statistics
Matches: 218, Mismatches: 22, Indels: 17
0.85 0.09 0.07
Matches are distributed among these distances:
100 75 0.34
101 6 0.03
105 1 0.00
106 42 0.19
107 2 0.01
111 25 0.11
112 67 0.31
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (106 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGGTCCCATGTA
AGACCATGTCTGGGACATGGCATTGGCACAGAGATGAAAGG
Found at i:36041176 original size:50 final size:50
Alignment explanation
Indices: 36040958--36041360 Score: 348
Period size: 50 Copynumber: 7.7 Consensus size: 50
36040948 GGTAAAGAAA
*
36040958 TCCCATGTAAGACCATGTCTGGGA-ATGGCATTGGCATCATTGAGATTATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAAAGG
* *
36041013 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-GATGAAAGG
* *
36041069 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-GATGAAAGG
*
36041125 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAAAGG
* * *
36041175 TCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAAAGG
* * * * * *
36041225 TGCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCTCCTATATGAGAA-C
1 T-CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA-AAGG
* * * * * * **
36041275 TCCCATGTAAGACCATATCTAGGATATGGAATTGGCA--GTACAAGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAAAGG
* * *
36041324 TCCAATGTAAGACCATGTCTGGGATATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36041361 TGTTATTATC
Statistics
Matches: 305, Mismatches: 34, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
48 2 0.01
49 39 0.13
50 117 0.38
51 5 0.02
55 25 0.08
56 115 0.38
58 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAAAGG
Found at i:36047029 original size:29 final size:30
Alignment explanation
Indices: 36046992--36047048 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
36046982 TCTGAGCTTT
36046992 GGGGCAAAAGT-GTAATTATGT-AAAGTTTA
1 GGGGCAAAA-TCGTAATTATGTCAAAGTTTA
*
36047021 GGGGCAAAATCGTAATTTTGTCAAAGTT
1 GGGGCAAAATCGTAATTATGTCAAAGTT
36047049 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 1 0.04
29 18 0.72
30 6 0.24
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (30 bp):
GGGGCAAAATCGTAATTATGTCAAAGTTTA
Found at i:36047503 original size:50 final size:50
Alignment explanation
Indices: 36047387--36047834 Score: 277
Period size: 50 Copynumber: 8.8 Consensus size: 50
36047377 ACATTAAGAG
* * **
36047387 GAGAGGTCCCATGTAAGACCATATCTGGGACATGACATTGGCATCATTAAGATT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-T
* * * *
36047441 ATAGAGGCCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAT
1 -GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * *
36047492 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTAGCATCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * * * * * * *
36047542 GAGAGGTCTCC-CGTAAGA--ATGTATCGG--AT-ACAAATGTCA-GGACATT
1 GAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGC-ATTGGCACCGAGA-T
* * ** *** ** * * *
36047588 AAGAATGTATCA-G-ATTTTCCAAATCTGGGACATGACATTGGCATCATTAAGATTAT
1 GAG-AGGTCCCATGTA-AGACCATGTCTGGGACATGGCATTGGCA-C----CGA-GAT
*
36047644 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
**
36047694 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * * *
36047744 GAGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCTATAT
1 GAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * * * *
36047794 GAGAACTCCCATGTAAGACCATATTTGGGATATGGAATTGG
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
36047835 TAGTACAAGA
Statistics
Matches: 305, Mismatches: 66, Indels: 49
0.73 0.16 0.12
Matches are distributed among these distances:
45 5 0.02
46 10 0.03
47 3 0.01
48 12 0.04
49 2 0.01
50 188 0.62
51 9 0.03
52 3 0.01
54 1 0.00
55 43 0.14
56 27 0.09
57 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:36048712 original size:98 final size:98
Alignment explanation
Indices: 36048538--36048720 Score: 224
Period size: 98 Copynumber: 1.9 Consensus size: 98
36048528 TGAGATTTTG
** * * * * * **
36048538 AGAGGTCCCTTGTAAGACCATGTCTGGGATAGGGCGTTGGCACCGAGGTGAGAGGTCCCACGTAA
1 AGAGGTCCCCCGTAAGACCATGTCTAGGACAGGGCATGGGCACCGAGATGAGAACTCCCACGTAA
*
36048603 GACTCTGTCTGGGAGATGGCGGTGGCACCGGGA
66 GACTCTATCTGGGAGATGGCGGTGGCACCGGGA
* * *
36048636 AGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAA
1 AGAGGTCCCCCGTAAGACCATGTCTAGGACAGGGCATGGGCACCGAGATGAGAACTCCCACGTAA
*
36048701 GAC-CATATCTGGGATATGGC
66 GACTC-TATCTGGGAGATGGC
36048721 ATTGGCAGGA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
97 1 0.01
98 69 0.99
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (98 bp):
AGAGGTCCCCCGTAAGACCATGTCTAGGACAGGGCATGGGCACCGAGATGAGAACTCCCACGTAA
GACTCTATCTGGGAGATGGCGGTGGCACCGGGA
Found at i:36048720 original size:50 final size:49
Alignment explanation
Indices: 36048647--36048778 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
36048637 GAGGTCCCCC
* * * *
36048647 GTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAAC-TCCCAT
1 GTAAGACCATGTCTGGGATATGGCATGGGCA-CGACAAGA-AACATCCCAT
* * *
36048697 GTAAGACCATATCTGGGATATGGCATTGGCAGGACAAGAAACATCCCAT
1 GTAAGACCATGTCTGGGATATGGCATGGGCACGACAAGAAACATCCCAT
* *
36048746 GTAAGACCATGTCTGGGATATGGCTTTGGCACG
1 GTAAGACCATGTCTGGGATATGGCATGGGCACG
36048779 TTATTATCAG
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
48 3 0.04
49 41 0.58
50 27 0.38
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGATATGGCATGGGCACGACAAGAAACATCCCAT
Found at i:36048761 original size:49 final size:50
Alignment explanation
Indices: 36048543--36048777 Score: 192
Period size: 50 Copynumber: 4.8 Consensus size: 50
36048533 TTTTGAGAGG
* * * *** **
36048543 TCCCTTGTAAGACCATGTCTGGGATAGGGCGTTGGCACCGAGGTGAGAGG
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGACAAGAGAAC
* * ** ** *
36048593 TCCCACGTAAGACTC-TGTCTGGGAGATGGCGGTGGCACCGGGAAGAG--G
1 TCCCATGTAAGAC-CATGTCTGGGATATGGCATTGGCACCGACAAGAGAAC
** * * * * *
36048641 TCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGACAAGAGAAC
* *
36048691 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GGACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGACAAGAGAAC
*
36048739 ATCCCATGTAAGACCATGTCTGGGATATGGCTTTGGCAC
1 -TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCAC
36048778 GTTATTATCA
Statistics
Matches: 150, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
47 1 0.01
48 40 0.27
49 40 0.27
50 68 0.45
51 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGACAAGAGAAC
Found at i:36050417 original size:29 final size:30
Alignment explanation
Indices: 36050380--36050436 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
36050370 TCTGAGCTTT
36050380 GGGGCAAAAGTGTAATTATGT-AAAGTTTA
1 GGGGCAAAAGTGTAATTATGTCAAAGTTTA
* *
36050409 GGGGCAAAATTGTAATTTTGTCAAAGTT
1 GGGGCAAAAGTGTAATTATGTCAAAGTT
36050437 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.33
Consensus pattern (30 bp):
GGGGCAAAAGTGTAATTATGTCAAAGTTTA
Found at i:36050889 original size:50 final size:50
Alignment explanation
Indices: 36050775--36051201 Score: 271
Period size: 50 Copynumber: 8.4 Consensus size: 50
36050765 TTAAGAGGAA
* * * * *
36050775 AGGTCCCATGTAAGACCATATCTGGGACATGACATTGGCATCATTAAGATTATGAG
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C----CGA-GATGAG
* *
36050831 AGGCCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG
* *
36050881 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTAGCATCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG
* * * * ** * * * *
36050931 AGGTCTCC-CGTAAGA--ATGTATCGG--AT-ACAAATGTCA-GGACATTAAG
1 AGGTC-CCATGTAAGACCATGTCTGGGACATGGC-GTTGGCACCGAGA-TGAG
* ** *** ** * * * *
36050977 AATGTATCA-G-ATTTTCCAAATCTGGGACATGACATTGGCATCATTAAGATTATGAG
1 -AGGTCCCATGTA-AGACCATGTCTGGGACATGGCGTTGGCA-C----CGA-GATGAG
36051033 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG
*
36051083 AGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAG
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG
* * * * *
36051133 AGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAG
1 AGGTC-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG
**
36051183 AACTCCCATGTAAGACCAT
1 AGGTCCCATGTAAGACCAT
36051202 ATTTGGGATA
Statistics
Matches: 290, Mismatches: 59, Indels: 50
0.73 0.15 0.13
Matches are distributed among these distances:
45 5 0.02
46 10 0.03
47 3 0.01
48 12 0.04
49 2 0.01
50 177 0.61
51 10 0.03
55 7 0.02
56 62 0.21
57 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG
Found at i:36051980 original size:50 final size:49
Alignment explanation
Indices: 36051922--36052113 Score: 208
Period size: 50 Copynumber: 3.9 Consensus size: 49
36051912 ATTGAGATCT
* * *
36051922 TGAGAGGTCCCATGTAAGACCATGTTTGGGACAGGGCGTTGGCACCGAGG
1 TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-G
36051972 TGAGAGGTCCCACGTAAGACTC-TGTCTGGGACATGGCGTTGGCACCGAG
1 TGAGAGGTCCCACGTAAGAC-CATGTCTGGGACATGGCGTTGGCACCGAG
* * * * * *
36052021 -AAGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATA
1 TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-G
** * * * *
36052070 TGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCA
36052114 GTACAAGAAA
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 40 0.33
49 1 0.01
50 77 0.64
51 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (49 bp):
TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:36052046 original size:48 final size:48
Alignment explanation
Indices: 36051924--36052162 Score: 194
Period size: 50 Copynumber: 4.9 Consensus size: 48
36051914 TGAGATCTTG
* * * * *
36051924 AGAGGTCCCATGTAAGACCATGTTTGGGACAGGGCGTTGGCACCGAGGTG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-G-A
*
36051974 AGAGGTCCCACGTAAGACTC-TGTCTGGGACATGGCGTTGGCACCGAGA
1 AGAGGTCCCACGTAAGAC-CATGTCTGGGACATGGCATTGGCACCGAGA
* * * *
36052022 AGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATA
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGA
** * * * * *
36052070 TGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACAAGA
1 --AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGAGA
** * * * *
36052122 A-ACATCCCATGTAAGACTATGTCTGGGACATTGCTTTGGCA
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
36052163 TGTTATTATC
Statistics
Matches: 156, Mismatches: 27, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
47 1 0.01
48 41 0.26
49 34 0.22
50 76 0.49
51 1 0.01
52 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (48 bp):
AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGA
Found at i:36052098 original size:98 final size:98
Alignment explanation
Indices: 36051924--36052113 Score: 229
Period size: 98 Copynumber: 1.9 Consensus size: 98
36051914 TGAGATCTTG
* * * * * * **
36051924 AGAGGTCCCATGTAAGACCATGTTTGGGACAGGGCGTTGGCACCGAGGTGAGAGGTCCCACGTAA
1 AGAGGTCCCACGTAAGACCATGTCTAGGACAGGGCATGGGCACCGAGATGAGAACTCCCACGTAA
* *
36051989 GACTCTGTCTGGGACATGGCGTTGGCACCGAGA
66 GACTCTATCTGGGACATGGCATTGGCACCGAGA
* * * *
36052022 AGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAA
1 AGAGGTCCCACGTAAGACCATGTCTAGGACAGGGCATGGGCACCGAGATGAGAACTCCCACGTAA
*
36052087 GAC-CATATCTGGGATATGGCATTGGCA
66 GACTC-TATCTGGGACATGGCATTGGCA
36052114 GTACAAGAAA
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
97 1 0.01
98 75 0.99
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (98 bp):
AGAGGTCCCACGTAAGACCATGTCTAGGACAGGGCATGGGCACCGAGATGAGAACTCCCACGTAA
GACTCTATCTGGGACATGGCATTGGCACCGAGA
Found at i:36054227 original size:56 final size:50
Alignment explanation
Indices: 36054159--36054296 Score: 168
Period size: 56 Copynumber: 2.6 Consensus size: 50
36054149 TTAAGAGGAT
* * *
36054159 GAGGTCCCATGTAAGACCATATCTAGGACATGACATTGGCATCATTAAGATTATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGC-TC--CAAGA--A-GA
* * *
36054215 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCTCCGAGAAGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCTCCAAGAAGA
36054265 GAGGTCCCATGTAAGACCATGTCTGGGACATG
1 GAGGTCCCATGTAAGACCATGTCTGGGACATG
36054297 GCGTTAGCAC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
50 34 0.45
51 1 0.01
53 3 0.04
55 2 0.03
56 36 0.47
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCTCCAAGAAGA
Found at i:36054267 original size:50 final size:50
Alignment explanation
Indices: 36054159--36054348 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 50
36054149 TTAAGAGGAT
* * * * **
36054159 GAGGTCCCATGTAAGACCATATCTAGGACATGACATTGGCATCATTAAGATTATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGC-TC--CGAGA--A-GA
36054215 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCTCCGAGAAGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCTCCGAGAAGA
* * *
36054265 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTAGCACCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCTCCGAGAAGA
* * * *
36054315 GAGGTCTC-TCGTAAGAACATTTGTGGGACATGGC
1 GAGGTCCCAT-GTAAGACCATGTCTGGGACATGGC
36054349 ATGGGCACCT
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 1 0.01
50 77 0.64
51 1 0.01
53 3 0.03
55 2 0.02
56 36 0.30
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCTCCGAGAAGA
Found at i:36054357 original size:50 final size:50
Alignment explanation
Indices: 36054211--36054392 Score: 197
Period size: 50 Copynumber: 3.6 Consensus size: 50
36054201 CATTAAGATT
*
36054211 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCTCCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* *
36054261 AAGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTAGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * * * * * * *
36054311 ATGAGAGGTCTC-TCGTAAGAACATTTGTGGGACATGGCATGGGCACCTAT
1 ATGAGAGGTCCCAT-GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
** * *
36054361 ATGAGAACTCCCA-GATAAGGCCATATCTGGGA
1 ATGAGAGGTCCCATG-TAAGACCATGTCTGGGA
36054393 TATTGAATTG
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.02
50 107 0.98
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:36055181 original size:50 final size:50
Alignment explanation
Indices: 36055106--36055286 Score: 157
Period size: 50 Copynumber: 3.6 Consensus size: 50
36055096 ATGGAGATTT
* * *
36055106 TGAGAGGTCCCATGTAAGACCATGTCTGGGATAGGGCGTTGGCACCAAGG
1 TGAGAGGGCCCATGTAAGACCATGTCTGGGACAGGGCGTTGGCACCAAGA
* * * *
36055156 TGAGAGGGCCCATGTAAGTCTATGTCTGGGACATGGCGTTGGCACCGAGA
1 TGAGAGGGCCCATGTAAGACCATGTCTGGGACAGGGCGTTGGCACCAAGA
* * * * * * * * *
36055206 TGAGAGGTTCCC-CGTAAGATCATGTCTAGGACATGGCATGGGCACCGATA
1 TGAGAGG-GCCCATGTAAGACCATGTCTGGGACAGGGCGTTGGCACCAAGA
*** * *
36055256 TGAGAACTCCCATGTAAGACTATATCTGGGA
1 TGAGAGGGCCCATGTAAGACCATGTCTGGGA
36055287 TATTGCATTG
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 4 0.04
50 99 0.93
51 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.22
Consensus pattern (50 bp):
TGAGAGGGCCCATGTAAGACCATGTCTGGGACAGGGCGTTGGCACCAAGA
Found at i:36058489 original size:25 final size:26
Alignment explanation
Indices: 36058419--36058490 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 26
36058409 AGTTTTACTA
* *
36058419 TAGTCTCAGTATACACTAT-TTTAAG
1 TAGTCTCAGTATATACTATCTATAAG
*
36058444 T-GTTTTCAGTATATAGTCTATCTAT-AG
1 TAG-TCTCAGTATATA--CTATCTATAAG
36058471 TAGTCTCAGTATATACTATC
1 TAGTCTCAGTATATACTATC
36058491 ACTATATAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
24 1 0.03
25 16 0.42
27 18 0.47
28 3 0.08
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.43
Consensus pattern (26 bp):
TAGTCTCAGTATATACTATCTATAAG
Found at i:36058495 original size:27 final size:25
Alignment explanation
Indices: 36058449--36058502 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 25
36058439 TTAAGTGTTT
36058449 TCAGTATATAGTCTATCTATAGTAGTC
1 TCAGTATATAG-CTATCTATA-TAGTC
36058476 TCAGTATATA-CTATCACTATATAGTC
1 TCAGTATATAGCTAT--CTATATAGTC
36058502 T
1 T
36058503 ATCTATAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 4 0.16
26 6 0.24
27 15 0.60
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (25 bp):
TCAGTATATAGCTATCTATATAGTC
Found at i:36058508 original size:13 final size:13
Alignment explanation
Indices: 36058453--36058516 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
36058443 GTGTTTTCAG
36058453 TATATAGTCTATC
1 TATATAGTCTATC
*
36058466 TATAGTAGTCTCA-G
1 TATA-TAGTCT-ATC
36058480 TATATA--CTATCAC
1 TATATAGTCTAT--C
36058493 TATATAGTCTATC
1 TATATAGTCTATC
36058506 TATAGTAGTCT
1 TATA-TAGTCT
36058517 TAGTATATAC
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
10 1 0.02
11 2 0.05
13 17 0.41
14 16 0.39
15 5 0.12
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (13 bp):
TATATAGTCTATC
Found at i:36058508 original size:40 final size:40
Alignment explanation
Indices: 36058453--36058530 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
36058443 GTGTTTTCAG
36058453 TATATAGTCTATCTATAGTAGTCTCAGTATATACTATCAC
1 TATATAGTCTATCTATAGTAGTCTCAGTATATACTATCAC
*
36058493 TATATAGTCTATCTATAGTAGTCTTAGTATATACTATC
1 TATATAGTCTATCTATAGTAGTCTCAGTATATACTATC
36058531 TATAGCAGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.42
Consensus pattern (40 bp):
TATATAGTCTATCTATAGTAGTCTCAGTATATACTATCAC
Found at i:36058549 original size:25 final size:25
Alignment explanation
Indices: 36058501--36058555 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
36058491 ACTATATAGT
* *
36058501 CTATCTATAGTAGTCTTAGTATATA
1 CTATCTATAGCAGTCTTAGGATATA
*
36058526 CTATCTATAGCAGT-TTCAGGATATG
1 CTATCTATAGCAGTCTT-AGGATATA
36058551 CTATC
1 CTATC
36058556 AAGGACAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (25 bp):
CTATCTATAGCAGTCTTAGGATATA
Found at i:36058927 original size:18 final size:16
Alignment explanation
Indices: 36058885--36058927 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 16
36058875 TGTCGTTCGT
36058885 TTTCAAAATATTATTCA
1 TTTC-AAATATTATTCA
36058902 TTTACAAATCATTATTCAA
1 TTT-CAAAT-ATTATTC-A
36058921 TTTCAAA
1 TTTCAAA
36058928 ATGTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 7 0.30
18 12 0.52
19 4 0.17
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTCAAATATTATTCA
Found at i:36058929 original size:19 final size:17
Alignment explanation
Indices: 36058885--36058929 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
36058875 TGTCGTTCGT
36058885 TTTCAAAATATTATTCA
1 TTTCAAAATATTATTCA
36058902 TTT-ACAAATCATTATTCAA
1 TTTCA-AAAT-ATTATTC-A
36058921 TTTCAAAAT
1 TTTCAAAAT
36058930 GTTTTATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.04
17 7 0.29
18 7 0.29
19 8 0.33
20 1 0.04
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTCAAAATATTATTCA
Found at i:36081099 original size:15 final size:15
Alignment explanation
Indices: 36081075--36081119 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
36081065 CTTTGAGTAA
36081075 AAAAATGTGAAAAATG
1 AAAAA-GTGAAAAATG
36081091 AAAAAGTG-AAAATG
1 AAAAAGTGAAAAATG
*
36081105 AAAAA-TAAAAAATG
1 AAAAAGTGAAAAATG
36081119 A
1 A
36081120 TGAAAAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 1 0.04
14 18 0.67
15 3 0.11
16 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (15 bp):
AAAAAGTGAAAAATG
Found at i:36081114 original size:6 final size:7
Alignment explanation
Indices: 36081082--36081119 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
36081072 TAAAAAAATG
36081082 TGAAAAA
1 TGAAAAA
36081089 TGAAAAA
1 TGAAAAA
36081096 GTG-AAAA
1 -TGAAAAA
36081103 TGAAAAA
1 TGAAAAA
*
36081110 TAAAAAA
1 TGAAAAA
36081117 TGA
1 TGA
36081120 TGAAAAAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 2 0.07
7 23 0.85
8 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:36081116 original size:14 final size:14
Alignment explanation
Indices: 36081084--36081135 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
36081074 AAAAAATGTG
36081084 AAAAATGAAAAAGT
1 AAAAATGAAAAAGT
*
36081098 GAAAATGAAAAA-T
1 AAAAATGAAAAAGT
36081111 AAAAAATGATGAAAAAGT
1 --AAAA--ATGAAAAAGT
36081129 AAAAATG
1 AAAAATG
36081136 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
13 1 0.03
14 14 0.45
15 3 0.10
16 4 0.13
17 8 0.26
18 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
AAAAATGAAAAAGT
Found at i:36081135 original size:17 final size:17
Alignment explanation
Indices: 36081074--36081133 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 17
36081064 CCTTTGAGTA
36081074 AAAAAATG-TGAAAAAT
1 AAAAAATGATGAAAAAT
*
36081090 GAAAAAGTGAAAATGAAAAAT
1 -AAAAAATG---ATGAAAAAT
36081111 AAAAAATGATGAAAAAGT
1 AAAAAATGATGAAAAA-T
36081129 AAAAA
1 AAAAA
36081134 TGGAGAGGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 15 0.42
18 6 0.17
20 7 0.19
21 8 0.22
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (17 bp):
AAAAAATGATGAAAAAT
Found at i:36082593 original size:100 final size:100
Alignment explanation
Indices: 36082405--36083176 Score: 938
Period size: 100 Copynumber: 7.7 Consensus size: 100
36082395 TACCAATTTA
* * * *
36082405 ACTTCCTAGGCAATCCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTG
1 ACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTG
*
36082470 CAGTTAAAAAGATTAAAGCTACAATAGCGAATCTT
66 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
* * * *
36082505 ACTCCCCAGGCGACGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACTTTG
1 ACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTG
* *
36082570 CAGTTACAAAGATTAAAGCTACAACAGCAAATCTT
66 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
* * * * * * * *
36082605 ATTTCCCTGGTGGTGCAGTGGAACAGATTAAAGTCACATCAGTGAATCTGGCTTCCCCGACATTA
1 ACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTG
36082670 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
66 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
* * *
36082705 ACTCCCCAGGCGATGCAGTGGAATAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACATTG
1 ACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTG
*
36082770 CAGTTAAAAAGATTAAAGCTACAACAGTGAATCTT
66 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
** * * * *
36082805 ACTAACCAGGCGACGCAGTGGAATAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCAACTTTG
1 ACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTG
* * *
36082870 CAGTTAAAAAGATTAATGCTAAAATAGCGAATCTT
66 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
* * * * ** *
36082905 ATTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCCACAAT-GGCAAACCTTGCTTCCCCGACATT
1 ACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCCGACATT
36082969 GCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
65 GCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
* * * * * * * * *
36083005 ACTTCTCAAGCGGTGCAGTGGAACAAATTAACGTCAAAAT-AGTGAATCTTGCTTCCCCGAAATT
1 ACTTCCCAGGCGATGCAGTGGAACAGATTAAAG-CCACATCGGTGAATCTTGCTTCCCCGACATT
* *
36083069 ACAGTTAAAAAGATTAAAGCTACAATAGCGAATCTT
65 GCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
* * * * * * * * ** *
36083105 ACTTCCCAAGC-AGTGTAGTGGAACCGATTGAAGCTACAGCAGCGAATCTTATTTCCCCGACATC
1 ACTTCCCAGGCGA-TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATT
*
36083169 ACAGTTAA
65 GCAGTTAA
36083177 GTAGATCAAA
Statistics
Matches: 574, Mismatches: 94, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
99 3 0.01
100 567 0.99
101 4 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (100 bp):
ACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTG
CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTT
Found at i:36082962 original size:300 final size:300
Alignment explanation
Indices: 36082420--36083107 Score: 1038
Period size: 300 Copynumber: 2.3 Consensus size: 300
36082410 CTAGGCAATC
36082420 CAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
1 CAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
**
36082485 AAGCTACAATAGCGAATCTTACTCCCCAGGCGACGCAGTGGAACAGATTAAAGCCACATCGGTGA
66 AAGCTACAATAGCGAATCTTACTAACCAGGCGACGCAGTGGAACAGATTAAAGCCACATCGGTGA
** * *
36082550 ATCTTGCTTCCCTGACTTTGCAGTTACAAAGATTAAAGCTACAACAGCAAATCTTATTTCCCTGG
131 ATCTTGCTTCCCCAACTTTGCAGTTAAAAAGATTAAAGCTAAAACAGCAAATCTTATTTCCCTGG
* * ** *
36082615 TGGTGCAGTGGAACAGATTAAAGTCACATCAGTGAATCTGGCTTCCCCGACATTACAGTTAAAAA
196 CGGTGCAGTGGAACAGATTAAAGCCACATCAGCAAACCTGGCTTCCCCGACATTACAGTTAAAAA
*
36082680 GATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATG
261 GATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATG
* * *
36082720 CAGTGGAATAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACATTGCAGTTAAAAAGATTA
1 CAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
* * *
36082785 AAGCTACAACAGTGAATCTTACTAACCAGGCGACGCAGTGGAATAGATTAAAGCCACATCGGTGA
66 AAGCTACAATAGCGAATCTTACTAACCAGGCGACGCAGTGGAACAGATTAAAGCCACATCGGTGA
* * *
36082850 ATCTTGCTTCCCCAACTTTGCAGTTAAAAAGATTAATGCTAAAATAGCGAATCTTATTTCCCTGG
131 ATCTTGCTTCCCCAACTTTGCAGTTAAAAAGATTAAAGCTAAAACAGCAAATCTTATTTCCCTGG
* * * *
36082915 CGGTGTAGTGGAACAGATTAAAGCCACAAT-GGCAAACCTTGCTTCCCCGACATTGCAGTTAAAA
196 CGGTGCAGTGGAACAGATTAAAGCCAC-ATCAGCAAACCTGGCTTCCCCGACATTACAGTTAAAA
* * *
36082979 AGATTAAAGCTACAACAGCGAATCTTACTTCTCAAGCGGTG
260 AGATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATG
* * * * * *
36083020 CAGTGGAACAAATTAACGTCAAAAT-AGTGAATCTTGCTTCCCCGAAATTACAGTTAAAAAGATT
1 CAGTGGAACAGATTAAAG-CCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATT
36083084 AAAGCTACAATAGCGAATCTTACT
65 AAAGCTACAATAGCGAATCTTACT
36083108 TCCCAAGCAG
Statistics
Matches: 347, Mismatches: 39, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
300 341 0.98
301 6 0.02
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (300 bp):
CAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
AAGCTACAATAGCGAATCTTACTAACCAGGCGACGCAGTGGAACAGATTAAAGCCACATCGGTGA
ATCTTGCTTCCCCAACTTTGCAGTTAAAAAGATTAAAGCTAAAACAGCAAATCTTATTTCCCTGG
CGGTGCAGTGGAACAGATTAAAGCCACATCAGCAAACCTGGCTTCCCCGACATTACAGTTAAAAA
GATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGATG
Found at i:36096555 original size:47 final size:47
Alignment explanation
Indices: 36096473--36096670 Score: 252
Period size: 47 Copynumber: 4.2 Consensus size: 47
36096463 GTTATTGTAA
* * * * * *
36096473 TGCATATAAACTATCACTTAATGATATTGTGGACAAGTCACCACTGT
1 TGCAGATAAACTACCACTTAATAAAATTGTGGACAAGCCACCACTTT
* *
36096520 TGCAGATAAACTACCACTTAATAAAATTATTGACAAGCCACCACTTT
1 TGCAGATAAACTACCACTTAATAAAATTGTGGACAAGCCACCACTTT
* * *
36096567 TGCAAATAAACTGCCACTTAATAAAATTGTGGACTAGCCACCACTTT
1 TGCAGATAAACTACCACTTAATAAAATTGTGGACAAGCCACCACTTT
* * * *
36096614 TGTAGATAAACTGCCACTTTATAATATTGTGGACAAGCCACCACTTT
1 TGCAGATAAACTACCACTTAATAAAATTGTGGACAAGCCACCACTTT
*
36096661 TGTAGATAAA
1 TGCAGATAAA
36096671 TTGCTACTTC
Statistics
Matches: 133, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (47 bp):
TGCAGATAAACTACCACTTAATAAAATTGTGGACAAGCCACCACTTT
Found at i:36112948 original size:14 final size:16
Alignment explanation
Indices: 36112929--36112960 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36112919 TGAAAATTTC
36112929 AAAACCC-T-AAAATA
1 AAAACCCTTCAAAATA
36112943 AAAACCCTTCAAAATA
1 AAAACCCTTCAAAATA
36112959 AA
1 AA
36112961 GAATAGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 1 0.06
16 8 0.50
ACGTcount: A:0.62, C:0.22, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAACCCTTCAAAATA
Found at i:36119761 original size:13 final size:13
Alignment explanation
Indices: 36119733--36119772 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
36119723 TAAGTAAATG
* *
36119733 GAAATGGTTATGT
1 GAAATGTTTATAT
*
36119746 GAAGTGTTTATAT
1 GAAATGTTTATAT
36119759 GAAATGTTTATAT
1 GAAATGTTTATAT
36119772 G
1 G
36119773 GATATAGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (13 bp):
GAAATGTTTATAT
Found at i:36119816 original size:13 final size:12
Alignment explanation
Indices: 36119798--36119831 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
36119788 AAAGGGACAT
36119798 TTGAAATGAATA
1 TTGAAATGAATA
36119810 CTTGAAATGAATA
1 -TTGAAATGAATA
36119823 TGTGAAATG
1 T-TGAAATG
36119832 TTAAATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 1 0.05
13 19 0.95
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (12 bp):
TTGAAATGAATA
Found at i:36129642 original size:15 final size:15
Alignment explanation
Indices: 36129618--36129664 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
36129608 AAATTAAGTT
36129618 CACATATAGGGTTCA
1 CACATATAGGGTTCA
* *
36129633 CACATTTAGGGCTCA
1 CACATATAGGGTTCA
* *
36129648 CACATCTATGGTTCA
1 CACATATAGGGTTCA
36129663 CA
1 CA
36129665 TATAGAATTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (15 bp):
CACATATAGGGTTCA
Found at i:36129737 original size:22 final size:22
Alignment explanation
Indices: 36129689--36129764 Score: 55
Period size: 23 Copynumber: 3.4 Consensus size: 22
36129679 AATAAACAAT
* *
36129689 TAGGGTTCACATATTAACACATG
1 TAGGGTTCACATA-TAAAACATA
36129712 TAGGGTTCACATA-AATAACATA
1 TAGGGTTCACATATAA-AACATA
* ** * *
36129734 TAGGCTTCGTATATTAGAACATG
1 TAGGGTTCACATA-TAAAACATA
36129757 TAGGGTTC
1 TAGGGTTC
36129765 GCGTATTTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
21 2 0.05
22 14 0.33
23 25 0.60
24 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (22 bp):
TAGGGTTCACATATAAAACATA
Found at i:36141886 original size:24 final size:24
Alignment explanation
Indices: 36141852--36141900 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
36141842 AAATATTTAT
*
36141852 TTTACTAGATTATCAA-TTCTATAA
1 TTTACTAGATTAACAACTT-TATAA
*
36141876 TTTACTGGATTAACAACTTTATAA
1 TTTACTAGATTAACAACTTTATAA
36141900 T
1 T
36141901 GTGATGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (24 bp):
TTTACTAGATTAACAACTTTATAA
Found at i:36145636 original size:16 final size:17
Alignment explanation
Indices: 36145615--36145656 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
36145605 TATTCGAATG
36145615 AAAAAAATT-AAAAAAT
1 AAAAAAATTAAAAAAAT
36145631 AAAAAAATTAAAAAAAT
1 AAAAAAATTAAAAAAAT
36145648 AGAAAAAAT
1 A-AAAAAAT
36145657 CGATTCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 9 0.38
17 8 0.33
18 7 0.29
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAAAAATTAAAAAAAT
Found at i:36145653 original size:8 final size:8
Alignment explanation
Indices: 36145615--36145656 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
36145605 TATTCGAATG
36145615 AAAAAAAT
1 AAAAAAAT
*
36145623 TAAAAAAT
1 AAAAAAAT
36145631 AAAAAAATT
1 AAAAAAA-T
36145640 AAAAAAAT
1 AAAAAAAT
36145648 AGAAAAAAT
1 A-AAAAAAT
36145657 CGATTCAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 15 0.50
9 15 0.50
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (8 bp):
AAAAAAAT
Found at i:36155516 original size:25 final size:25
Alignment explanation
Indices: 36155488--36155603 Score: 160
Period size: 25 Copynumber: 4.6 Consensus size: 25
36155478 ATGCTCATAT
* *
36155488 GAGCTGTGAATCGGTATGCTCTCTC
1 GAGCTGTAAATCGGTATGCTCTCAC
36155513 GAGCTGTAAATCGGTATGCTCTCAC
1 GAGCTGTAAATCGGTATGCTCTCAC
* *
36155538 GAGCTGTAATTTGGTATGCTCTCAC
1 GAGCTGTAAATCGGTATGCTCTCAC
* *
36155563 AAGTTGTAAATCGGTATGCTCTCAC
1 GAGCTGTAAATCGGTATGCTCTCAC
* *
36155588 AAGCTGTAAACCGGTA
1 GAGCTGTAAATCGGTA
36155604 AGCTTATACG
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 81 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (25 bp):
GAGCTGTAAATCGGTATGCTCTCAC
Found at i:36158944 original size:25 final size:25
Alignment explanation
Indices: 36158916--36159031 Score: 160
Period size: 25 Copynumber: 4.6 Consensus size: 25
36158906 ATGCTCATAT
* *
36158916 GAGCTGTGAATCGGTATGCTCTCTC
1 GAGCTGTAAATCGGTATGCTCTCAC
36158941 GAGCTGTAAATCGGTATGCTCTCAC
1 GAGCTGTAAATCGGTATGCTCTCAC
* *
36158966 GAGCTGTAATTTGGTATGCTCTCAC
1 GAGCTGTAAATCGGTATGCTCTCAC
* *
36158991 AAGTTGTAAATCGGTATGCTCTCAC
1 GAGCTGTAAATCGGTATGCTCTCAC
* *
36159016 AAGCTGTAAACCGGTA
1 GAGCTGTAAATCGGTA
36159032 AGCTTATACG
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 81 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (25 bp):
GAGCTGTAAATCGGTATGCTCTCAC
Done.