Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 117 of 126
Found at i:36165312 original size:17 final size:17
Alignment explanation
Indices: 36165279--36165313 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36165269 AGCTGTAGGG
**
36165279 CTCACACGGCCGTGTGA
1 CTCACACGGCCAAGTGA
36165296 CTCACACGGCCAAGTGA
1 CTCACACGGCCAAGTGA
36165313 C
1 C
36165314 ACGCTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.37, G:0.26, T:0.14
Consensus pattern (17 bp):
CTCACACGGCCAAGTGA
Found at i:36167116 original size:30 final size:28
Alignment explanation
Indices: 36167082--36167137 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
36167072 GTGATTAAAT
36167082 AAAATCGAC-ACAAGCAGAATCTAAAAGAAA
1 AAAATCGACAACAAG-A-AAT-TAAAAGAAA
*
36167112 AAAATTGACAACAAGAAATTAAAAGA
1 AAAATCGACAACAAGAAATTAAAAGA
36167138 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 7 0.29
29 3 0.12
30 9 0.38
31 5 0.21
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.12
Consensus pattern (28 bp):
AAAATCGACAACAAGAAATTAAAAGAAA
Found at i:36179433 original size:40 final size:40
Alignment explanation
Indices: 36179335--36179637 Score: 380
Period size: 40 Copynumber: 7.6 Consensus size: 40
36179325 TCCTCGTTCA
* * * ** *
36179335 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
36179374 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
36179414 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
36179454 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
36179494 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
36179534 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
36179574 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
36179614 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36179638 CAGCATTCAA
Statistics
Matches: 239, Mismatches: 20, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 194 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:36187118 original size:40 final size:40
Alignment explanation
Indices: 36187070--36187217 Score: 260
Period size: 40 Copynumber: 3.7 Consensus size: 40
36187060 GCAAACACAT
* * *
36187070 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
36187110 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
36187150 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
36187190 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
36187218 TCCAATGCTC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:36196484 original size:17 final size:17
Alignment explanation
Indices: 36196464--36196498 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
36196454 TTAAGTCATC
36196464 TATTTATCTTTC-TTATT
1 TATTTAT-TTTCATTATT
36196481 TATTTATTTTCATTATT
1 TATTTATTTTCATTATT
36196498 T
1 T
36196499 TTCTTCTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTATTTTCATTATT
Found at i:36205390 original size:87 final size:87
Alignment explanation
Indices: 36205277--36205451 Score: 350
Period size: 87 Copynumber: 2.0 Consensus size: 87
36205267 TTTGGTACCT
36205277 ACAAGATATGAGCAGAATTTGTCAAAAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGT
1 ACAAGATATGAGCAGAATTTGTCAAAAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGT
36205342 ATAATTGAGTTGGGCTCCCGTC
66 ATAATTGAGTTGGGCTCCCGTC
36205364 ACAAGATATGAGCAGAATTTGTCAAAAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGT
1 ACAAGATATGAGCAGAATTTGTCAAAAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGT
36205429 ATAATTGAGTTGGGCTCCCGTC
66 ATAATTGAGTTGGGCTCCCGTC
36205451 A
1 A
36205452 AGGTTATACT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (87 bp):
ACAAGATATGAGCAGAATTTGTCAAAAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGT
ATAATTGAGTTGGGCTCCCGTC
Found at i:36218471 original size:17 final size:19
Alignment explanation
Indices: 36218451--36218491 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
36218441 TTAATTAGTA
*
36218451 TAAAATA-TTCAAT-AAAT
1 TAAAATAGTTAAATAAAAT
36218468 TAAAA-AGTTAAATAAAAT
1 TAAAATAGTTAAATAAAAT
36218486 TAAAAT
1 TAAAAT
36218492 TTAGGAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 1 0.05
17 10 0.50
18 9 0.45
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
TAAAATAGTTAAATAAAAT
Found at i:36221827 original size:27 final size:27
Alignment explanation
Indices: 36221788--36221927 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
36221778 ATTCGTGGGC
** *
36221788 AAATGACTAAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCCCGAAGGGTA
*
36221815 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCCCGAAGGGTA
* * * *
36221842 AAATGACTGAAATACCCCCAAAAGCTA
1 AAATGACCGAAATACCCCCGAAGGGTA
*
36221869 AAATGATCGAAATACCCCCGAAGGGTA
1 AAATGACCGAAATACCCCCGAAGGGTA
**
36221896 AAATGACCGAAATACCCCATAA-GGTA
1 AAATGACCGAAATACCCCCGAAGGGTA
36221922 AAATGA
1 AAATGA
36221928 TTGTTATACC
Statistics
Matches: 98, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 10 0.10
27 88 0.90
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.16
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCGAAGGGTA
Found at i:36221871 original size:54 final size:54
Alignment explanation
Indices: 36221788--36221927 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
36221778 ATTCGTGGGC
* * * * *
36221788 AAATGACTAAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCCCAAAAGGTAAAATGACCGAAATACCCCCGAAGGGTA
* *
36221842 AAATGACTGAAATACCCCCAAAAGCTAAAATGATCGAAATACCCCCGAAGGGTA
1 AAATGACTGAAATACCCCCAAAAGGTAAAATGACCGAAATACCCCCGAAGGGTA
* *
36221896 AAATGACCGAAATA-CCCCATAAGGTAAAATGA
1 AAATGACTGAAATACCCCCAAAAGGTAAAATGA
36221928 TTGTTATACC
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
53 16 0.21
54 60 0.79
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.16
Consensus pattern (54 bp):
AAATGACTGAAATACCCCCAAAAGGTAAAATGACCGAAATACCCCCGAAGGGTA
Found at i:36222135 original size:26 final size:26
Alignment explanation
Indices: 36222083--36222171 Score: 124
Period size: 26 Copynumber: 3.4 Consensus size: 26
36222073 TGTACTAGTG
* *
36222083 GCTTTGCTGCATATACTGTTATTGGCA
1 GCTTTGCTGCGT-TACTGTTACTGGCA
*
36222110 GCTTTGCTGCGTTATTGTTACTGGCA
1 GCTTTGCTGCGTTACTGTTACTGGCA
* *
36222136 GCCTTGCTGCGTTACTATTACTGGCA
1 GCTTTGCTGCGTTACTGTTACTGGCA
36222162 GCTTTGCTGC
1 GCTTTGCTGC
36222172 AATAATGGTG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 44 0.80
27 11 0.20
ACGTcount: A:0.13, C:0.22, G:0.25, T:0.39
Consensus pattern (26 bp):
GCTTTGCTGCGTTACTGTTACTGGCA
Found at i:36222322 original size:28 final size:28
Alignment explanation
Indices: 36222282--36222368 Score: 102
Period size: 28 Copynumber: 3.0 Consensus size: 28
36222272 ATTGTACTTA
* *
36222282 TTACTGTAATGGGCAAAGGCCCAAACTG
1 TTACTGTATTGGGCTAAGGCCCAAACTG
*
36222310 TTACTGTATTGGGCTAAGACCCACACACTG
1 TTACTGTATTGGGCTAAGGCCCA-A-ACTG
** *
36222340 TTACCATATTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCAAACTG
36222368 T
1 T
36222369 ACTAATACTG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 25 0.50
29 1 0.02
30 24 0.48
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCAAACTG
Found at i:36222342 original size:30 final size:30
Alignment explanation
Indices: 36222282--36222365 Score: 109
Period size: 30 Copynumber: 2.9 Consensus size: 30
36222272 ATTGTACTTA
* *
36222282 TTACTGTAATGGGCAAAGGCCCA-A-ACTG
1 TTACTGTATTGGGCTAAGGCCCACACACTG
*
36222310 TTACTGTATTGGGCTAAGACCCACACACTG
1 TTACTGTATTGGGCTAAGGCCCACACACTG
**
36222340 TTACCATATTGGGCTAAGGCCCACAC
1 TTACTGTATTGGGCTAAGGCCCACAC
36222366 TGTACTAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
28 20 0.42
29 1 0.02
30 27 0.56
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (30 bp):
TTACTGTATTGGGCTAAGGCCCACACACTG
Found at i:36225105 original size:30 final size:29
Alignment explanation
Indices: 36225008--36225106 Score: 137
Period size: 30 Copynumber: 3.4 Consensus size: 29
36224998 ACTATAATAT
*
36225008 GCTAAGGCCCACA-CTATTACTGTATTGG
1 GCTAAGGCCCACACCTGTTACTGTATTGG
* *
36225036 GCTAAGGCACACACACTGTTACCGTATTGG
1 GCTAAGGCCCACAC-CTGTTACTGTATTGG
*
36225066 GCTAAGGCCCACACGCTGTTACTGTACTGG
1 GCTAAGGCCCACAC-CTGTTACTGTATTGG
36225096 GCTAAGGCCCA
1 GCTAAGGCCCA
36225107 TACTATACTG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
28 12 0.19
30 50 0.81
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (29 bp):
GCTAAGGCCCACACCTGTTACTGTATTGG
Found at i:36225763 original size:13 final size:13
Alignment explanation
Indices: 36225741--36225775 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
36225731 TAATTTCGTG
36225741 AAAATTTCGTT-C
1 AAAATTTCGTTCC
36225753 AAAAGTTTCGTTCC
1 AAAA-TTTCGTTCC
36225767 AAAATTTCG
1 AAAATTTCG
36225776 ACGTTTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.19
13 12 0.57
14 5 0.24
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (13 bp):
AAAATTTCGTTCC
Found at i:36226936 original size:84 final size:84
Alignment explanation
Indices: 36226773--36227134 Score: 536
Period size: 84 Copynumber: 4.4 Consensus size: 84
36226763 TCTTTGAATG
* * * **
36226773 TAAGG-GGTTGCTAAGTGCAGATTCC-CCGAATCATTGA-TCAGAAAGGGGTTGC-ATGTGTTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGTTGA
36226834 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
*
36226853 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGT-TCTA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGT-TG
*
36226917 ATTCCTCGTATCATTGATTA
65 ATTCCCCGTATCATTGATTA
* *
36226937 TAAGGTGGTTGTTAAGTGCTGATTCCACCATATCCTTGATTGTGAAAGGGGTTGCTATGTGTTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGTTGA
*
36227002 TTCCCTGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* * * * * *
36227021 TAAGGTGGTTGCTAAGTACTGATTCCACCATATCCTTGATTGTGAAAGGAGTTTCTATCTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGTTGA
36227086 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
36227105 TAAGGTGGTTGCTAAGTGCTGATTCCACCG
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCG
36227135 GGATCCTTTG
Statistics
Matches: 255, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
80 5 0.02
81 19 0.07
82 10 0.04
83 14 0.05
84 206 0.81
85 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (84 bp):
TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGTTGA
TTCCCCGTATCATTGATTA
Found at i:36231737 original size:13 final size:13
Alignment explanation
Indices: 36231721--36231755 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
36231711 TGATTTCATG
36231721 AAAATTTTGTTCC
1 AAAATTTTGTTCC
*
36231734 AAAATTTCGTTCC
1 AAAATTTTGTTCC
36231747 AAAATTTTG
1 AAAATTTTG
36231756 ACATTTGGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (13 bp):
AAAATTTTGTTCC
Found at i:36232885 original size:42 final size:41
Alignment explanation
Indices: 36232766--36233123 Score: 332
Period size: 42 Copynumber: 8.6 Consensus size: 41
36232756 TCTTTGTATG
* * *
36232766 TAAGG-GGTTGCTAAGTGCAGATTCCCCGAATCATTGATCA
1 TAAGGTGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* * *
36232806 GAAAGG-GGTTGC-ATGTGTTGATTCCCCGTATCATTGATTA
1 -TAAGGTGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* * * *
36232846 TAAGGTGGTTTCTAAGTGCTGATTCCATCGTATCCTTGATTG
1 TAAGGTGGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTA
* * * *
36232888 TGAAAGG-GTTTTCTATGTGCTGATTACCCGTATCATTGATTA
1 T--AAGGTGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* * *
36232930 TAAGGTGGTTGCTAAGTGCTGATTCCAGCGTATCCTTGATTG
1 TAAGGTGGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTA
* * *
36232972 TGAAAGG-GGTTGCTATGTGATGATTCCCCGTATCATTGACTA
1 T--AAGGTGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* * * *
36233014 TAAGTTGGTTGATAAGTGCTGATTCCACCGTATCCTTAATTA
1 TAAGGTGGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTA
* *
36233056 TGAAAGG-GGTTTCTATGTGCTGATTCCCCGTATCATTGATTA
1 T--AAGGTGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
* *
36233098 TAAGGTGGTTGTTAAGTGGTGATTCC
1 TAAGGTGGTTGCTAAGTGCTGATTCC
36233124 GTTGGGATCC
Statistics
Matches: 254, Mismatches: 49, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
39 4 0.02
40 39 0.15
41 70 0.28
42 78 0.31
43 52 0.20
44 11 0.04
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (41 bp):
TAAGGTGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTA
Found at i:36232918 original size:84 final size:84
Alignment explanation
Indices: 36232766--36233123 Score: 499
Period size: 84 Copynumber: 4.3 Consensus size: 84
36232756 TCTTTGTATG
* * * ** * *
36232766 TAAGG-GGTTGCTAAGTGCAGATTCC-CCGAATCATTGA-TCAGAAAGGGGTTGC-ATGTGTTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTTCTATGTGCTGA
36232827 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* * *
36232846 TAAGGTGGTTTCTAAGTGCTGATTCCATCGTATCCTTGATTGTGAAAGGGTTTTCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTTCTATGTGCTGA
*
36232911 TTACCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* * *
36232930 TAAGGTGGTTGCTAAGTGCTGATTCCAGCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGATGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTTCTATGTGCTGA
*
36232995 TTCCCCGTATCATTGACTA
66 TTCCCCGTATCATTGATTA
* * * *
36233014 TAAGTTGGTTGATAAGTGCTGATTCCACCGTATCCTTAATTATGAAAGGGGTTTCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTTCTATGTGCTGA
36233079 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* *
36233098 TAAGGTGGTTGTTAAGTGGTGATTCC
1 TAAGGTGGTTGCTAAGTGCTGATTCC
36233124 GTTGGGATCC
Statistics
Matches: 245, Mismatches: 29, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
80 5 0.02
81 18 0.07
82 9 0.04
83 11 0.04
84 202 0.82
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (84 bp):
TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTTCTATGTGCTGA
TTCCCCGTATCATTGATTA
Found at i:36241983 original size:18 final size:18
Alignment explanation
Indices: 36241962--36242011 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
36241952 GTTATTGAAT
36241962 CCTCTCTTTTCTCTCTTC
1 CCTCTCTTTTCTCTCTTC
36241980 CCTCTCTTTTCTTCTCTTC
1 CCTCTCTTTTC-TCTCTTC
* *
36241999 TCT-TCTCTTCTCT
1 CCTCTCTTTTCTCT
36242012 TCCTCTGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 3 0.10
18 17 0.59
19 9 0.31
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (18 bp):
CCTCTCTTTTCTCTCTTC
Found at i:36241997 original size:5 final size:5
Alignment explanation
Indices: 36241964--36242024 Score: 63
Period size: 5 Copynumber: 12.4 Consensus size: 5
36241954 TATTGAATCC
* * *
36241964 TCTCT TTTC- TCTCT TC-CC TCTCT TTTCT TCTCT TCTCT TCTCT TCTCT
1 TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT
*
36242012 TCCTCT GCTCT TC
1 T-CTCT TCTCT TC
36242025 ATTCTAGTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
4 6 0.13
5 35 0.78
6 4 0.09
ACGTcount: A:0.00, C:0.41, G:0.02, T:0.57
Consensus pattern (5 bp):
TCTCT
Found at i:36242728 original size:27 final size:27
Alignment explanation
Indices: 36242691--36242835 Score: 204
Period size: 27 Copynumber: 5.4 Consensus size: 27
36242681 TGTGATTCTT
*
36242691 GGGT-AAATGACCGAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCCTCGAA
36242717 GGGTAAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* * *
36242744 GAGTAAAATAACCGAAATACCCCCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
36242771 GGGTAAAATGACCGAAATACCC-CTAAA
1 GGGTAAAATGACCGAAATACCCTC-GAA
* *
36242798 GGGTAATATGACTGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
36242825 GGGTAAAATGA
1 GGGTAAAATGA
36242836 TATATACTGG
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
26 5 0.05
27 99 0.94
28 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.16
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCTCGAA
Found at i:36242901 original size:26 final size:26
Alignment explanation
Indices: 36242861--36242935 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 26
36242851 TTGCCACATA
*
36242861 TACTGTTACTGGCAGCTTTGTTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* * *
36242887 TATTGTTACTCGCAGCCTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
*
36242913 TACTATTACTGGCAGCTTTGCTG
1 TACTGTTACTGGCAGCTTTGCTG
36242936 TGATATTGGT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.13, C:0.23, G:0.24, T:0.40
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCGT
Found at i:36243174 original size:28 final size:29
Alignment explanation
Indices: 36243043--36243174 Score: 130
Period size: 30 Copynumber: 4.6 Consensus size: 29
36243033 ACTACATTGT
*
36243043 ACTGATTACTG-TAATGGGCTAAGGCCCAC
1 ACTG-TTACTGATACTGGGCTAAGGCCCAC
* *
36243072 ACTGTTACT-ATATTGGTCTAAGGTCCACAC
1 ACTGTTACTGATACTGGGCTAAGG-CC-CAC
* * *
36243102 ACTATTAC-CATATTGGGCTAAGGCCCAC
1 ACTGTTACTGATACTGGGCTAAGGCCCAC
36243130 ACGCTGTTACTG-TACTGGGCTAAGGCCCAC
1 A--CTGTTACTGATACTGGGCTAAGGCCCAC
36243160 ACTG-TACTGATACTG
1 ACTGTTACTGATACTG
36243175 TATAGGGCTC
Statistics
Matches: 88, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
27 5 0.06
28 28 0.32
29 8 0.09
30 47 0.53
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (29 bp):
ACTGTTACTGATACTGGGCTAAGGCCCAC
Found at i:36243183 original size:33 final size:31
Alignment explanation
Indices: 36243044--36243196 Score: 104
Period size: 30 Copynumber: 5.0 Consensus size: 31
36243034 CTACATTGTA
*
36243044 CTGATTACTGTAATGGGCTAAGGCCCACACTG
1 CTGA-TACTGTACTGGGCTAAGGCCCACACTG
* * * * *
36243076 -T--TACTATATTGGTCTAAGGTCCACAC-A
1 CTGATACTGTACTGGGCTAAGGCCCACACTG
** *
36243103 CT-ATTACCATATTGGGCTAAGGCCCACAC-G
1 CTGA-TACTGTACTGGGCTAAGGCCCACACTG
*
36243133 CTGTTACTGTACTGGGCTAAGGCCCACACTG
1 CTGATACTGTACTGGGCTAAGGCCCACACTG
* *
36243164 TACTGATACTGTA-TAGGGCTCAGGCCCAGACTG
1 --CTGATACTGTACT-GGGCTAAGGCCCACACTG
36243197 GTTCTGCATG
Statistics
Matches: 97, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
28 22 0.23
30 46 0.47
31 2 0.02
32 1 0.01
33 26 0.27
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (31 bp):
CTGATACTGTACTGGGCTAAGGCCCACACTG
Found at i:36247115 original size:42 final size:42
Alignment explanation
Indices: 36247068--36247300 Score: 393
Period size: 42 Copynumber: 5.6 Consensus size: 42
36247058 GAGCATTGGA
36247068 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
36247110 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
36247152 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
36247194 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
36247234 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG--
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
36247274 ATATGTCCGGGTTAAGACCCGAAGGCA
1 ATATATCCGGGCTAAGACCCGAAGGCA
36247301 AATGTGTTTG
Statistics
Matches: 186, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
40 62 0.33
42 124 0.67
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (42 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:36255318 original size:40 final size:40
Alignment explanation
Indices: 36255254--36255634 Score: 532
Period size: 40 Copynumber: 9.4 Consensus size: 40
36255244 NNNNNNNNNN
* * * *
36255254 CTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGA-TATATCCGGG
* * *
36255294 TTAAGACCCGAAGGCATTTGTGCTAG-TGATTTTATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGA-TATATCCGGG
* *
36255334 TTAAGACCCGAAGGCATTTGTGCTAGTTGATATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGG
36255374 CTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGG
*
36255414 CTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTG--ATATATCCGGG
* * *
36255456 CTAAGACTCGCAGGCATTTGTGCGAGTTGACATATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTG--ATATATCCGGG
* * *
36255498 CTAAGACCCGCAGGCATGTGTGCGAGTTGATATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGG
*
36255538 CTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGG
*
36255578 CTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGG
36255618 CTAAGACCCGAAGGCAT
1 CTAAGACCCGAAGGCAT
36255635 GTGATTCGGA
Statistics
Matches: 322, Mismatches: 16, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
40 241 0.75
41 3 0.01
42 78 0.24
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGG
Found at i:36261118 original size:95 final size:95
Alignment explanation
Indices: 36260955--36261144 Score: 380
Period size: 95 Copynumber: 2.0 Consensus size: 95
36260945 TGTTGTTACG
36260955 GATAAATTCACGGCAACTTGGTAATTTGCTAACTACTGGTCAAACATACTTATTAAATTAACTAA
1 GATAAATTCACGGCAACTTGGTAATTTGCTAACTACTGGTCAAACATACTTATTAAATTAACTAA
36261020 TCTCTTGAATATTTTCCAATGTCAATTCAA
66 TCTCTTGAATATTTTCCAATGTCAATTCAA
36261050 GATAAATTCACGGCAACTTGGTAATTTGCTAACTACTGGTCAAACATACTTATTAAATTAACTAA
1 GATAAATTCACGGCAACTTGGTAATTTGCTAACTACTGGTCAAACATACTTATTAAATTAACTAA
36261115 TCTCTTGAATATTTTCCAATGTCAATTCAA
66 TCTCTTGAATATTTTCCAATGTCAATTCAA
36261145 ACAATTAATC
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (95 bp):
GATAAATTCACGGCAACTTGGTAATTTGCTAACTACTGGTCAAACATACTTATTAAATTAACTAA
TCTCTTGAATATTTTCCAATGTCAATTCAA
Found at i:36268926 original size:59 final size:59
Alignment explanation
Indices: 36268794--36268911 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
36268784 GCCTACTAGG
36268794 CACGAAGGCACGAATACACGTCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATAT
1 CACGAAGGCACGAATACACGTCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATAT
*
36268853 CACGAAGGCCCGAATACACGTCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATAT
1 CACGAAGGCACGAATACACGTCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATAT
36268912 ATCACTAGCA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (59 bp):
CACGAAGGCACGAATACACGTCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATAT
Found at i:36268943 original size:40 final size:40
Alignment explanation
Indices: 36268886--36268991 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
36268876 CCAGCATGAT
* * * *
36268886 TGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCACGAA
1 TGCTCTTCGGAACTTAGC-CGGATATAGTAACTAGCACCAA
* *
36268926 TGCTCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGAACTTAG-CCGGATATAGTAACTAGCACCAA
*
36268967 TGC-CTTCGGATCTTAGTCCGGATAT
1 TGCTCTTCGGAACTTAG-CCGGATAT
36268992 GGTCACTTAG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
40 41 0.75
41 14 0.25
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCGGATATAGTAACTAGCACCAA
Found at i:36269366 original size:29 final size:29
Alignment explanation
Indices: 36269327--36269405 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
36269317 CTTAATAATC
*
36269327 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
36269357 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
36269386 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36269406 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:36269448 original size:43 final size:43
Alignment explanation
Indices: 36269387--36270263 Score: 1754
Period size: 43 Copynumber: 20.4 Consensus size: 43
36269377 TGCATTTCAA
36269387 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269430 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269473 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269516 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269559 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269602 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269645 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269688 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269731 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269774 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269817 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269860 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269903 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269946 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36269989 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36270032 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36270075 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36270118 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36270161 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36270204 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36270247 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
36270264 TGAAAACCAA
Statistics
Matches: 834, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 834 1.00
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:36279785 original size:39 final size:39
Alignment explanation
Indices: 36279729--36279954 Score: 196
Period size: 39 Copynumber: 5.7 Consensus size: 39
36279719 TTGAATGATG
*
36279729 TCCGGGCTAAG-TCCCGAAGGC-TTGTGCTAAG-TGAC-AATA
1 TCCGGACTAAGAT-CCGAAGGCATTGTGC-AAGAT-ACTAA-A
*
36279768 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGACTAAGATCCGAAGGCA-TTGTGCAAGATACTAAA
*
36279808 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGACTAAGATCCGAAGGCA-TTGTGCAAGATACTAAA
* * * *
36279848 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCA-TTGTGCAAGATACTAAA
* * * *
36279887 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCA-TTGTGCAAGATACTAAA
**
36279926 TCCGGGTTAAG-TCCTGAAGGCATTTGTGC
1 TCCGGACTAAGATCC-GAAGGCA-TTGTGC
36279955 GAATTACTAT
Statistics
Matches: 172, Mismatches: 9, Indels: 11
0.90 0.05 0.06
Matches are distributed among these distances:
39 93 0.54
40 70 0.41
41 9 0.05
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGACTAAGATCCGAAGGCATTGTGCAAGATACTAAA
Found at i:36279817 original size:40 final size:39
Alignment explanation
Indices: 36279729--36279991 Score: 313
Period size: 40 Copynumber: 6.6 Consensus size: 39
36279719 TTGAATGATG
*
36279729 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAA-A
*
36279768 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
*
36279808 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
36279848 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* *
36279887 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
*
36279926 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGA-TACTA-AA
*
36279967 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
36279992 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 12, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 93 0.46
40 95 0.47
41 14 0.07
42 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:36279864 original size:79 final size:79
Alignment explanation
Indices: 36279729--36279991 Score: 306
Period size: 79 Copynumber: 3.3 Consensus size: 79
36279719 TTGAATGATG
* * *
36279729 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAA-ATCCGGGCTAAGACCCGAAGGCA
36279790 TTTGTGCGAGATACTAAA
62 TTTGTGCGAGATACTAAA
*
36279808 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGACCCGAAGGCATTT
*
36279872 GTGCGAGATACTAAT
65 GTGCGAGATACTAAA
* * * * *
36279887 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGACCCGAAGGCATTTG
36279952 TGCGA-ATTACTATAA
66 TGCGAGA-TACTA-AA
*
36279967 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
36279992 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
78 37 0.23
79 86 0.53
80 28 0.17
81 10 0.06
82 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:36280024 original size:79 final size:78
Alignment explanation
Indices: 36279758--36280024 Score: 251
Period size: 79 Copynumber: 3.4 Consensus size: 78
36279748 GCTTGTGCTA
** * *
36279758 AGTGAC-AATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA-ATCCGGACTAAGAT
1 AGTGACTAA-ATCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAATA-CCGGGCTAAG-C
**
36279821 CCGAAGGCATTTGTGCG
62 CCGAAGGCATTTGAACG
* * *
36279838 AGAT-ACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCG
1 AG-TGACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCG
**
36279902 AAGGCATTTGTGCG
65 AAGGCATTTGAACG
* *
36279916 AGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 AGTGACTAAATCCGGGTTAAGTCC-GAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-C
36279979 CCGAAGGCATTTGAACG
62 CCGAAGGCATTTGAACG
* *
36279996 AG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 AGTGA-CTAAATCCGGGTT-AAGTCCGAAGG
36280025 TACGTGATTT
Statistics
Matches: 163, Mismatches: 14, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 40 0.25
79 74 0.45
80 45 0.28
81 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (78 bp):
AGTGACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGA
AGGCATTTGAACG
Found at i:36282583 original size:289 final size:287
Alignment explanation
Indices: 36282066--36282644 Score: 910
Period size: 289 Copynumber: 2.0 Consensus size: 287
36282056 ACTCCATAGC
*
36282066 TAGGGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCCCGTTTTTAATTTTTTTAT
1 TAGGGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCCCGTTTTTAATTTTTTTAC
* * * * * *
36282131 GTTTTTAGAGTCCTCATAGCTCTATTTAGCTTATTCTATCGTTAATTCCTGTTACAGTTCATATT
66 ATTTTTAGAATCCTCATAGCTCGATTTAGCTTATTCTACCATTAATTCATGTTACAGTTCATATT
* *
36282196 TGGAAAAATACCCATAGGTGAAATGTTTTTATTTTGATGTTTTATGGTAGAATATGAAGTTTGAA
131 TGGAAAAATACCCATAGGTGAAATATGTTTATTTTGATGTTTTATGGTAGAATATGAAGTTTGAA
* * *
36282261 ATTATGTTAAAGAACTTTTGCTAGGCGATTTTAAGTGAAAACAAGCAAAACGACATAATCAGTAA
196 ATTATGTTAAACAACTTTTGCTAGGCAATTTTAAGTGAAAACAAGCAAAACAACATAATCAGTAA
36282326 AAATACCTAATGTTCATAAGTAAATGT
261 AAATACCTAATGTTCATAAGTAAATGT
* *
36282353 TAGGGTTTTTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCCC-TTTTTATTTTTATTTT
1 TAGGGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCCCGTTTTTA--ATT-TTTT
* * **
36282417 TACATTTTTGGAATCCT-AGTAGCTCGGTTTAGCTTATTCTACCATTAATTCATGTTAGGGTTCA
63 TACATTTTTAGAATCCTCA-TAGCTCGATTTAGCTTATTCTACCATTAATTCATGTTACAGTTCA
36282481 TATTTGGAAAAATACCCATAGGTGAAATATGTTTATTTTGATGTTTTATGGTAGAATATGAAGTT
127 TATTTGGAAAAATACCCATAGGTGAAATATGTTTATTTTGATGTTTTATGGTAGAATATGAAGTT
* * *
36282546 TGAAATTATGTTAAACAACTTTTTCTAGGCAATTTTAAGTGAAAACGAGCAAAACAACATAATCG
192 TGAAATTATGTTAAACAACTTTTGCTAGGCAATTTTAAGTGAAAACAAGCAAAACAACATAATCA
*
36282611 GTAAAAATATCTAATGTTCATAAGTAAATGT
257 GTAAAAATACCTAATGTTCATAAGTAAATGT
36282642 TAG
1 TAG
36282645 AGTGGGAATT
Statistics
Matches: 266, Mismatches: 22, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
286 6 0.02
287 47 0.18
288 3 0.01
289 210 0.79
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (287 bp):
TAGGGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCCCGTTTTTAATTTTTTTAC
ATTTTTAGAATCCTCATAGCTCGATTTAGCTTATTCTACCATTAATTCATGTTACAGTTCATATT
TGGAAAAATACCCATAGGTGAAATATGTTTATTTTGATGTTTTATGGTAGAATATGAAGTTTGAA
ATTATGTTAAACAACTTTTGCTAGGCAATTTTAAGTGAAAACAAGCAAAACAACATAATCAGTAA
AAATACCTAATGTTCATAAGTAAATGT
Found at i:36283221 original size:50 final size:50
Alignment explanation
Indices: 36283114--36283226 Score: 127
Period size: 50 Copynumber: 2.3 Consensus size: 50
36283104 GATGAGACCA
* * * **
36283114 CATGTAAGACCATGTCTAGGACATGGCGTTGGTACCAAGATGAGAGGTCC
1 CATGTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATGAGACCTCC
** * * *
36283164 CCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGACCTCT
1 CATGTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATGAGACCTCC
*
36283214 TATGTAAGACCAT
1 CATGTAAGACCAT
36283227 ATCTGGGATA
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (50 bp):
CATGTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATGAGACCTCC
Found at i:36283525 original size:20 final size:20
Alignment explanation
Indices: 36283500--36283538 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36283490 TGAGTTTTTT
36283500 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
36283520 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
36283539 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:36284358 original size:50 final size:50
Alignment explanation
Indices: 36284282--36284425 Score: 146
Period size: 50 Copynumber: 2.9 Consensus size: 50
36284272 TCCTGTACTA
* * * * **
36284282 CCAATGCCATAT-CCAAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAA-ACATAGTCTTACGTGGGACCTCTCATATCGGTG
* * * *
36284332 CCCATGCCATTTCCCAAACATAGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAAACATAGTCTTACGTGGGACCTCTCATATCGGTG
* * * *
36284382 CCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCGCTCATA
1 CCAATGCCATGTCCCAAACATAGTCTTACGTGGGACCTCTCATA
36284426 ACCTCAATAA
Statistics
Matches: 76, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
50 72 0.95
51 4 0.05
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
CCAATGCCATGTCCCAAACATAGTCTTACGTGGGACCTCTCATATCGGTG
Found at i:36288473 original size:28 final size:28
Alignment explanation
Indices: 36288429--36288524 Score: 115
Period size: 28 Copynumber: 3.5 Consensus size: 28
36288419 CTATTCAGTG
* *
36288429 ACAGT-ATAGTGTGGGCCCTAGCCCAAT
1 ACAGTAATAGTGTGGGCCTTAGCCTAAT
*
36288456 ACAGTAATAGTGTGGGCCTTAGCCTAGT
1 ACAGTAATAGTGTGGGCCTTAGCCTAAT
*
36288484 ACAG-AATCAGTGTGGACCTTAGCCTAAT
1 ACAGTAAT-AGTGTGGGCCTTAGCCTAAT
* *
36288512 ATAGTAACAGTGT
1 ACAGTAATAGTGT
36288525 AGTACAATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.14
28 49 0.83
29 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (28 bp):
ACAGTAATAGTGTGGGCCTTAGCCTAAT
Found at i:36301753 original size:24 final size:24
Alignment explanation
Indices: 36301707--36301753 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
36301697 TTTATATGAA
*
36301707 AATATACTCATTCAGCTTCAATTT
1 AATATACTCATTCAGCCTCAATTT
*
36301731 AATATA-TTATTCAGCCTCTAATT
1 AATATACTCATTCAGCCTC-AATT
36301754 CAACCTCCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (24 bp):
AATATACTCATTCAGCCTCAATTT
Found at i:36301944 original size:23 final size:22
Alignment explanation
Indices: 36301901--36301944 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
36301891 TTCTAAGTCG
36301901 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
36301924 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
36301945 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:36302061 original size:45 final size:45
Alignment explanation
Indices: 36301992--36302082 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
36301982 AGATACTCGA
*
36301992 TGGATTCAGCACATAACAACCACCTTATTAATCAATGATGTCCGG
1 TGGAATCAGCACATAACAACCACCTTATTAATCAATGATGTCCGG
* *
36302037 TGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTTCGG
1 TGGAATCAGCACATAACAACCACCTTATTAATCAATGATGTCCGG
36302082 T
1 T
36302083 TCACATAGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (45 bp):
TGGAATCAGCACATAACAACCACCTTATTAATCAATGATGTCCGG
Found at i:36304024 original size:27 final size:26
Alignment explanation
Indices: 36303969--36304020 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
36303959 ACATAAGGCC
36303969 ATAACAGTCATTTTATCTCCTAGGGGT
1 ATAACAGTCATTTTA-CTCCTAGGGGT
*
36303996 ATAACAGTCATTTTA-TCCTATGGGT
1 ATAACAGTCATTTTACTCCTAGGGGT
36304021 GTATTTCGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 9 0.38
27 15 0.62
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (26 bp):
ATAACAGTCATTTTACTCCTAGGGGT
Found at i:36304033 original size:27 final size:27
Alignment explanation
Indices: 36304003--36304281 Score: 348
Period size: 27 Copynumber: 10.4 Consensus size: 27
36303993 GGTATAACAG
* *
36304003 TCATTTTATCCTATGGGTGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
36304030 TCATTTTACCCTATAGGGGTATTT-TA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
36304056 GTCCTTTTACCCTATGGGGGTATTTCGA
1 -TCATTTTACCCTATGGGGGTATTTCGA
*
36304084 CCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * * *
36304111 TCATTTTACCTTATAGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGA
*
36304138 TCATTTTACCCTATGGGGGTATTT-TA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
36304164 GTCATTTTACTCTGTGGGGGTATTTCTA
1 -TCATTTTACCCTATGGGGGTATTTCGA
36304192 TCATTTTACCCTAT-GGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
36304218 TCATTTTACCCTATGGAGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
36304245 TCATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGA
36304272 TCATTTTACC
1 TCATTTTACC
36304282 TATTTTGGGG
Statistics
Matches: 220, Mismatches: 27, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
26 26 0.12
27 191 0.87
28 3 0.01
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGA
Found at i:36306372 original size:28 final size:28
Alignment explanation
Indices: 36306332--36306499 Score: 245
Period size: 28 Copynumber: 6.0 Consensus size: 28
36306322 GTGACAGTAC
*
36306332 AGTGTGGGCCTTAGCCCAATACAATAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
36306360 AGTGTGGGCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
* *
36306388 AGTGTAGGCTTTAGCCCAA-ACAG-AATT
1 AGTGTGGGCCTTAGCCCAATACAGTAA-T
*
36306415 AGTTTGGGCCTTAGCCCAATACAGT-AT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
36306442 CAGTGTGGGCCTTAGCCCAATACAGT-AT
1 -AGTGTGGGCCTTAGCCCAATACAGTAAT
36306470 CAGTGTGGGCCTTAGCCCAATACAGTAAT
1 -AGTGTGGGCCTTAGCCCAATACAGTAAT
36306499 A
1 A
36306500 ATGCAGTGCA
Statistics
Matches: 128, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
26 2 0.02
27 22 0.17
28 102 0.80
29 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:36306432 original size:83 final size:84
Alignment explanation
Indices: 36306336--36306494 Score: 252
Period size: 83 Copynumber: 1.9 Consensus size: 84
36306326 CAGTACAGTG
*
36306336 TGGGCCTTAGCCCAATACAATAAT-AGTGTGGGCCTTAGCCCAATACAGTAAT-AGTGTAGGCTT
1 TGGGCCTTAGCCCAATACAAT-ATCAGTGTGGGCCTTAGCCCAATACAGT-ATCAGTGTAGGCCT
36306399 TAGCCCAA-ACAGAATTAGTT
64 TAGCCCAATACAGAATTAGTT
* *
36306419 TGGGCCTTAGCCCAATACAGTATCAGTGTGGGCCTTAGCCCAATACAGTATCAGTGTGGGCCTTA
1 TGGGCCTTAGCCCAATACAATATCAGTGTGGGCCTTAGCCCAATACAGTATCAGTGTAGGCCTTA
36306484 GCCCAATACAG
66 GCCCAATACAG
36306495 TAATAATGCA
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
82 4 0.06
83 62 0.89
84 4 0.06
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (84 bp):
TGGGCCTTAGCCCAATACAATATCAGTGTGGGCCTTAGCCCAATACAGTATCAGTGTAGGCCTTA
GCCCAATACAGAATTAGTT
Found at i:36306638 original size:26 final size:26
Alignment explanation
Indices: 36306606--36306670 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
36306596 TATCGCAGTA
*
36306606 CTGCCAGTAATAGCATCGCAGCAAAG
1 CTGCCAGTAATAGCATCACAGCAAAG
**
36306632 CTGCCAGT-ATCAATATCACAGCAAAG
1 CTGCCAGTAAT-AGCATCACAGCAAAG
*
36306658 CTGCTAGTAATAG
1 CTGCCAGTAATAG
36306671 TATATGTGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 2 0.06
26 28 0.88
27 2 0.06
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (26 bp):
CTGCCAGTAATAGCATCACAGCAAAG
Found at i:36306942 original size:27 final size:27
Alignment explanation
Indices: 36306901--36307262 Score: 331
Period size: 27 Copynumber: 13.4 Consensus size: 27
36306891 AGGGGTTGCA
* *
36306901 GTCATTTTACCCTATGAGAGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
36306928 GTCATTTTACTCTAT-AGGGGTATTTCA
1 GTCATTTTACCCTATGA-GGGTATTTCG
* * * *
36306955 ATCATTTTACCCTATGGGGGAATTCCG
1 GTCATTTTACCCTATGAGGGTATTTCG
** * *
36306982 GTTGTTTTACCTTAT-AGGGGTATTTTG
1 GTCATTTTACCCTATGA-GGGTATTTCG
*
36307009 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
36307036 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
36307063 ATCATTTTACCCTAT-AGGGGTACTTT-A
1 GTCATTTTACCCTATGA-GGGTA-TTTCG
*
36307090 GTCATTTTACCCTATG-GAGGTATTTCA
1 GTCATTTTACCCTATGAG-GGTATTTCG
* * *
36307117 GTCATTTTAGCATAT-AGGGGTGTTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
** * *
36307144 GTCATTTTACTATATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
36307171 GTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
36307198 ATCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
36307225 GTAATTTTATCCTATGAGGGTATTTCT
1 GTCATTTTACCCTATGAGGGTATTTCG
36307252 GTCATTTTACC
1 GTCATTTTACC
36307263 TATTTTGGGG
Statistics
Matches: 273, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
26 5 0.02
27 264 0.97
28 4 0.01
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:36307014 original size:81 final size:81
Alignment explanation
Indices: 36306901--36307262 Score: 428
Period size: 81 Copynumber: 4.5 Consensus size: 81
36306891 AGGGGTTGCA
* * * *
36306901 GTCATTTTACCCTAT-GAGAGTATTTTGGTCATTTTACTCTATAGGGGTATTTCAATCATTTTAC
1 GTCATTTTACCTTATAG-GGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAATCATTTTAC
* *
36306965 CCTATGGGGGAATTCCG
65 CCTATGGGGGTATTTCG
** *
36306982 GTTGTTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACC
1 GTCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAATCATTTTACC
36307047 CTATGGGGGTATTTCG
66 CTATGGGGGTATTTCG
* * * * * * *
36307063 ATCATTTTACCCTATAGGGGTACTTTAGTCATTTTACCCTATGGAGGTATTTCAGTCATTTTAGC
1 GTCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAATCATTTTACC
* * *
36307128 ATATAGGGGTGTTTCG
66 CTATGGGGGTATTTCG
* * *
36307144 GTCATTTTA-CTATATGGGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTCGATCATTTTAC
1 GTCATTTTACCT-TATAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAATCATTTTAC
*
36307208 CCTATGGGGGTATTTTG
65 CCTATGGGGGTATTTCG
*
36307225 GTAATTTTATCC-TAT-GAGGGTATTTCT-GTCATTTTACC
1 GTCATTTTA-CCTTATAG-GGGTATTT-TGGTCATTTTACC
36307263 TATTTTGGGG
Statistics
Matches: 238, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
80 2 0.01
81 233 0.98
82 2 0.01
83 1 0.00
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCTTATAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAATCATTTTACC
CTATGGGGGTATTTCG
Found at i:36308405 original size:9 final size:9
Alignment explanation
Indices: 36308391--36308428 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
36308381 TACATTAAGC
36308391 ATGTTGACT
1 ATGTTGACT
36308400 ATGTTGAGC-
1 ATGTTGA-CT
36308409 ATGTTGACT
1 ATGTTGACT
*
36308418 GTGTTGACT
1 ATGTTGACT
36308427 AT
1 AT
36308429 AAATTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 1 0.04
9 23 0.92
10 1 0.04
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.42
Consensus pattern (9 bp):
ATGTTGACT
Found at i:36308411 original size:18 final size:18
Alignment explanation
Indices: 36308388--36308424 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
36308378 TGTTACATTA
36308388 AGCATGTTGACTATGTTG
1 AGCATGTTGACTATGTTG
*
36308406 AGCATGTTGACTGTGTTG
1 AGCATGTTGACTATGTTG
36308424 A
1 A
36308425 CTATAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.30, T:0.38
Consensus pattern (18 bp):
AGCATGTTGACTATGTTG
Found at i:36308449 original size:33 final size:33
Alignment explanation
Indices: 36308407--36308479 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
36308397 ACTATGTTGA
*
36308407 GCATGTTGACTGTGTTGACTATAAATTTGATTC
1 GCATGTTGACTGTGTTGACTATAAATCTGATTC
36308440 GCATGTTGACTGTGTTGACTATAAATCTGATTC
1 GCATGTTGACTGTGTTGACTATAAATCTGATTC
36308473 GCATGTT
1 GCATGTT
36308480 AAGCATGCCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.41
Consensus pattern (33 bp):
GCATGTTGACTGTGTTGACTATAAATCTGATTC
Found at i:36310271 original size:62 final size:63
Alignment explanation
Indices: 36310162--36310302 Score: 180
Period size: 62 Copynumber: 2.3 Consensus size: 63
36310152 TATTGCATCA
* *
36310162 GAGTGGCTTGGCCACAACGTTATTGAATGGCTTATCCAGAACGTGCAGCTTGTCTGCAATATT
1 GAGTGGCTTAGCCACAACGTTATTGAATGGCTTATCCACAACGTGCAGCTTGTCTGCAATATT
* * * *
36310225 GAGTGGCTTAGCC-CAACGTTATTGAGTTGTTTGA-CCACAATC-TGCAGCTTGTCTGCTATATT
1 GAGTGGCTTAGCCACAACGTTATTGAATGGCTT-ATCCACAA-CGTGCAGCTTGTCTGCAATATT
*
36310287 GAGTGGCTTGGCCACA
1 GAGTGGCTTAGCCACA
36310303 TTGTGTTGTC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
62 52 0.76
63 16 0.24
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (63 bp):
GAGTGGCTTAGCCACAACGTTATTGAATGGCTTATCCACAACGTGCAGCTTGTCTGCAATATT
Found at i:36311917 original size:30 final size:31
Alignment explanation
Indices: 36311881--36311986 Score: 90
Period size: 32 Copynumber: 3.4 Consensus size: 31
36311871 TAATGGCTAC
* *
36311881 AAGCCATAATTA-AGTAATGTGATTGGCACA
1 AAGCCATAAGTACAGTAATATGATTGGCACA
* *
36311911 AAGCCATTAGTAGCAGTGATATGATTGGCACA
1 AAGCCATAAGTA-CAGTAATATGATTGGCACA
* * *
36311943 CAGCCATCAGTAACAGTGAA-ATGATTGGTACA
1 AAGCCATAAGT-ACAGT-AATATGATTGGCACA
* *
36311975 TAGCCATCAGTA
1 AAGCCATAAGTA
36311987 ATGGTCATGT
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
30 10 0.16
31 1 0.02
32 50 0.79
33 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAGCCATAAGTACAGTAATATGATTGGCACA
Found at i:36311938 original size:32 final size:32
Alignment explanation
Indices: 36311900--36311987 Score: 122
Period size: 32 Copynumber: 2.8 Consensus size: 32
36311890 TTAAGTAATG
* * *
36311900 TGATTGGCACAAAGCCATTAGTAGCAGTGATA
1 TGATTGGCACAAAGCCATCAGTAACAGTGAAA
*
36311932 TGATTGGCACACAGCCATCAGTAACAGTGAAA
1 TGATTGGCACAAAGCCATCAGTAACAGTGAAA
* *
36311964 TGATTGGTACATAGCCATCAGTAA
1 TGATTGGCACAAAGCCATCAGTAA
36311988 TGGTCATGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (32 bp):
TGATTGGCACAAAGCCATCAGTAACAGTGAAA
Found at i:36312006 original size:32 final size:32
Alignment explanation
Indices: 36311944--36312082 Score: 156
Period size: 32 Copynumber: 4.3 Consensus size: 32
36311934 ATTGGCACAC
* * ** *
36311944 AGCCATCAGTAACAGTGA-AATGATTGGTACAT
1 AGCCATCAGTAACGGT-ACTATGATCAGTACAA
* *
36311976 AGCCATCAGTAATGGT-CATGTGATCAGTACAA
1 AGCCATCAGTAACGGTAC-TATGATCAGTACAA
*
36312008 AGCCATCAGTAACGGTACTATGATCGGTACAA
1 AGCCATCAGTAACGGTACTATGATCAGTACAA
* *
36312040 AGCCATTAGTAACGGTACTATGATCAGGACAA
1 AGCCATCAGTAACGGTACTATGATCAGTACAA
36312072 AGCCATCAGTA
1 AGCCATCAGTA
36312083 GCATCGCAGC
Statistics
Matches: 90, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
32 89 0.99
33 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (32 bp):
AGCCATCAGTAACGGTACTATGATCAGTACAA
Found at i:36312012 original size:64 final size:64
Alignment explanation
Indices: 36311944--36312082 Score: 174
Period size: 64 Copynumber: 2.2 Consensus size: 64
36311934 ATTGGCACAC
* * * * *
36311944 AGCCATCAGTAACAGTGA-AATGATTGGTACATAGCCATCAGTAATGGT-CATGTGATCAGTACA
1 AGCCATCAGTAACAGT-ACAATGATCGGTACAAAGCCATCAGTAACGGTAC-TATGATCAGGACA
36312007 A
64 A
* * *
36312008 AGCCATCAGTAACGGTACTATGATCGGTACAAAGCCATTAGTAACGGTACTATGATCAGGACAA
1 AGCCATCAGTAACAGTACAATGATCGGTACAAAGCCATCAGTAACGGTACTATGATCAGGACAA
36312072 AGCCATCAGTA
1 AGCCATCAGTA
36312083 GCATCGCAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
63 1 0.02
64 63 0.97
65 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (64 bp):
AGCCATCAGTAACAGTACAATGATCGGTACAAAGCCATCAGTAACGGTACTATGATCAGGACAA
Found at i:36312287 original size:24 final size:23
Alignment explanation
Indices: 36312254--36312312 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
36312244 CCATGCTCAT
*
36312254 AATCATTCATTCAAATCACAGACA
1 AATCAATCATTCAAA-CACAGACA
* *
36312278 AATCAATCATACCAAACATAGACA
1 AATCAATCAT-TCAAACACAGACA
*
36312302 AATCAGTCATT
1 AATCAATCATT
36312313 TACCCACCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.47, C:0.24, G:0.05, T:0.24
Consensus pattern (23 bp):
AATCAATCATTCAAACACAGACA
Found at i:36312363 original size:27 final size:27
Alignment explanation
Indices: 36312307--36312558 Score: 210
Period size: 27 Copynumber: 9.4 Consensus size: 27
36312297 AGACAAATCA
36312307 GTCA-TTTACCC-ACCA-GGGTATTACG
1 GTCATTTTACCCTA-CAGGGGTATTACG
36312332 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
36312359 TTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
36312386 GTCATTTTACCCTACAGGGATATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* ** *
36312413 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
36312440 GT-ATTCTACCCTACTGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTACG
* * * * *
36312466 ATCATTTTACCCTATAGGGGCATTGCA
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
36312493 GTCCTTTTACTC-ATC-GAGGGTATTTCG
1 GTCATTTTACCCTA-CAG-GGGTATTACG
** ** * *
36312520 GTTGTTTTACCCTATGGGGGCATTTCG
1 GTCATTTTACCCTACAGGGGTATTACG
36312547 GTCATTTTACCC
1 GTCATTTTACCC
36312559 ATCGAGGGTA
Statistics
Matches: 184, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
25 4 0.02
26 32 0.17
27 146 0.79
28 2 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:36312391 original size:54 final size:54
Alignment explanation
Indices: 36312326--36312558 Score: 247
Period size: 54 Copynumber: 4.3 Consensus size: 54
36312316 CCACCAGGGT
* *
36312326 ATTACGGTCATTTTACCCTACAGGGGTATTACGTTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAGGGGC
* * *
36312380 ATTACGGTCATTTTACCCTACAGGGATATTACGATCATTTTACCCTATGGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAGGGGC
* * * * *
36312434 ATTTCGGT-ATTCTACCCTACTGGGGTATTTCAATCATTTTACCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAGGGGC
* * * * * * ** *
36312487 ATTGCAGTCCTTTTACTC-ATC-GAGGGTATTTCGGTTGTTTTACCCTATGGGGGC
1 ATTACGGTCATTTTACCCTA-CAG-GGGTATTACGATCATTTTACCCTATAGGGGC
*
36312541 ATTTCGGTCATTTTACCC
1 ATTACGGTCATTTTACCC
36312559 ATCGAGGGTA
Statistics
Matches: 149, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
53 46 0.31
54 103 0.69
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (54 bp):
ATTACGGTCATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAGGGGC
Found at i:36312501 original size:107 final size:108
Alignment explanation
Indices: 36312322--36312558 Score: 291
Period size: 107 Copynumber: 2.2 Consensus size: 108
36312312 TTACCCACCA
* ** *
36312322 GGGTATTACGGTCATTTTACCCTACAGGGGTATTACGTTCATTTTACCCTACAGGGGCATTACGG
1 GGGTATTTCGGTCATTTTACCCTACAGGGGTATTACAATCATTTTACCCTACAGGGGCATTACAG
36312387 TCATTTTACCC-TAC-AGGGATATTACGATCATTTTACCCTATGG
66 TCATTTTACCCAT-CGAGGG-TATTACGATCATTTTACCCTATGG
* * * * *
36312430 GGGTATTTCGGT-ATTCTACCCTACTGGGGTATTTCAATCATTTTACCCTATAGGGGCATTGCAG
1 GGGTATTTCGGTCATTTTACCCTACAGGGGTATTACAATCATTTTACCCTACAGGGGCATTACAG
* * * * **
36312494 TCCTTTTACTCATCGAGGGTATTTCGGTTGTTTTACCCTATGG
66 TCATTTTACCCATCGAGGGTATTACGATCATTTTACCCTATGG
*
36312537 GGGCATTTCGGTCATTTTACCC
1 GGGTATTTCGGTCATTTTACCC
36312559 ATCGAGGGTA
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
107 85 0.78
108 24 0.22
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (108 bp):
GGGTATTTCGGTCATTTTACCCTACAGGGGTATTACAATCATTTTACCCTACAGGGGCATTACAG
TCATTTTACCCATCGAGGGTATTACGATCATTTTACCCTATGG
Found at i:36313138 original size:66 final size:66
Alignment explanation
Indices: 36313037--36313296 Score: 485
Period size: 66 Copynumber: 4.0 Consensus size: 66
36313027 TGATCATTGC
36313037 ACCCTTGGTTCCTT-CCA--C--TGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
1 ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
36313097 A
66 A
36313098 ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
1 ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
36313163 A
66 A
36313164 ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
1 ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
36313229 A
66 A
36313230 ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
1 ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
36313295 A
66 A
36313296 A
1 A
36313297 TGTAGTTTGG
Statistics
Matches: 194, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
61 14 0.07
62 3 0.02
64 1 0.01
66 176 0.91
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (66 bp):
ACCCTTGGTTCCTTCCCAGGCAATGTGCCAATAAACCTCGACCACCACCAATTAGGAATAGAGGC
A
Found at i:36322509 original size:60 final size:60
Alignment explanation
Indices: 36322399--36322582 Score: 210
Period size: 60 Copynumber: 3.1 Consensus size: 60
36322389 GTAATGGGAA
* ** * * * *
36322399 TGAT-CCTGGTCTCAATGATAA-TATGAATGACCAAGATGTTAATCCCCCTATTCGTAGGG
1 TGATACCTGGTCTAAATGATAACT-TGAATGGTCAAGACGCTGATCCTCCTATTCGTAGGG
* *
36322458 TGATACCTGGTGTGAATGATAACTTGAATGGTCAAGACGCTGATCCTCCTATTCGTAGGG
1 TGATACCTGGTCTAAATGATAACTTGAATGGTCAAGACGCTGATCCTCCTATTCGTAGGG
* * * * * *
36322518 TGATACCTGGTCTAAATGATAATTTGAATGGTCAGGATGTTGATCCTCCTATTCATAAGG
1 TGATACCTGGTCTAAATGATAACTTGAATGGTCAAGACGCTGATCCTCCTATTCGTAGGG
36322578 TGATA
1 TGATA
36322583 GATGGCCGAG
Statistics
Matches: 107, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
59 4 0.04
60 102 0.95
61 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (60 bp):
TGATACCTGGTCTAAATGATAACTTGAATGGTCAAGACGCTGATCCTCCTATTCGTAGGG
Found at i:36323703 original size:21 final size:21
Alignment explanation
Indices: 36323679--36323718 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
36323669 CTAAAAATGA
36323679 TGTTGTAATTTAGAATCAGAC
1 TGTTGTAATTTAGAATCAGAC
*
36323700 TGTTGTAATTTAGAGTCAG
1 TGTTGTAATTTAGAATCAG
36323719 GCTGCGTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (21 bp):
TGTTGTAATTTAGAATCAGAC
Found at i:36324899 original size:40 final size:40
Alignment explanation
Indices: 36324844--36324923 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
36324834 GGATTACCGC
36324844 AAAATTAACAAGGCAACTAGGGTGGACCATTTTCCCCTAT
1 AAAATTAACAAGGCAACTAGGGTGGACCATTTTCCCCTAT
36324884 AAAATTAACAAGGCAACTAGGGTGGACCATTTTCCCCTAT
1 AAAATTAACAAGGCAACTAGGGTGGACCATTTTCCCCTAT
36324924 CATTCATTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (40 bp):
AAAATTAACAAGGCAACTAGGGTGGACCATTTTCCCCTAT
Found at i:36325263 original size:77 final size:77
Alignment explanation
Indices: 36325033--36325252 Score: 422
Period size: 77 Copynumber: 2.9 Consensus size: 77
36325023 CCAAGATAAG
36325033 ACAACTTTCACATGTCCATATGGTACTTTTGCATTCAGATGGATGTCATTTGTGTTATGTAATGA
1 ACAACTTTCACATGTCCATATGGTACTTTTGCATTCAGATGGATGTCATTTGTGTTATGTAATGA
36325098 CCCGACAACTTT
66 CCCGACAACTTT
36325110 ACAACTTTCACATGTCCATATGGTACTTTTGCATTCAGATGGATGTCATTTGTGTTATGTAATGA
1 ACAACTTTCACATGTCCATATGGTACTTTTGCATTCAGATGGATGTCATTTGTGTTATGTAATGA
36325175 CCCGACAACTTT
66 CCCGACAACTTT
* *
36325187 ACAACTTTCACATGTCCATATGGTACTTTTGCATTCAGATGGACGTCATTCGTGTTATGTAATGA
1 ACAACTTTCACATGTCCATATGGTACTTTTGCATTCAGATGGATGTCATTTGTGTTATGTAATGA
36325252 C
66 C
36325253 TCGGAAACTT
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 141 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (77 bp):
ACAACTTTCACATGTCCATATGGTACTTTTGCATTCAGATGGATGTCATTTGTGTTATGTAATGA
CCCGACAACTTT
Found at i:36328723 original size:57 final size:57
Alignment explanation
Indices: 36328652--36328767 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
36328642 TTTATTTATC
* *
36328652 AACTTCAATTCCTCTTTTGAAAATTTTATGCCCTAAGACAATTCCCTCCTTAACTAT
1 AACTTCAATGCCTCTTTTGAAAATTTTATACCCTAAGACAATTCCCTCCTTAACTAT
36328709 AACTTCAATGCCTCTTTTGAAAATTTTATACCCTAAGACAATTCCCTCCTTAACTAT
1 AACTTCAATGCCTCTTTTGAAAATTTTATACCCTAAGACAATTCCCTCCTTAACTAT
36328766 AA
1 AA
36328768 AAAGACATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (57 bp):
AACTTCAATGCCTCTTTTGAAAATTTTATACCCTAAGACAATTCCCTCCTTAACTAT
Found at i:36331856 original size:30 final size:30
Alignment explanation
Indices: 36331822--36331878 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
36331812 GAGAAAATTT
36331822 TTGTTGATAAATTAGCTCATATGAAAGTAA
1 TTGTTGATAAATTAGCTCATATGAAAGTAA
36331852 TTGTTGATAAATTAGCTCATATGAAAG
1 TTGTTGATAAATTAGCTCATATGAAAG
36331879 GATAATTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.37
Consensus pattern (30 bp):
TTGTTGATAAATTAGCTCATATGAAAGTAA
Found at i:36335178 original size:4 final size:4
Alignment explanation
Indices: 36335171--36335201 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
36335161 ATGTATATAT
36335171 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
36335202 TTAGTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:36339539 original size:26 final size:27
Alignment explanation
Indices: 36339472--36339664 Score: 168
Period size: 27 Copynumber: 7.4 Consensus size: 27
36339462 CCTCAAAATA
*
36339472 GGTAAAATGACCATAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
36339499 GGTAAAATAACCGTAATGTCCC-TGTAG
1 GGTAAAATGACCGTAATG-CCCTTGTAG
** *
36339526 AAT-AAATGACCGTAACGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
36339552 GGTAAAATGACCGTAA------TATAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
* * *
36339573 GGTAAAATGATCGTACTGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
* * * *
36339600 GATAAAATGACCGTAATGCCCCTATCG
1 GGTAAAATGACCGTAATGCCCTTGTAG
** * *
36339627 GGTAAAATGACTATAATACCCTTGTAT
1 GGTAAAATGACCGTAATGCCCTTGTAG
36339654 GGTAAAATGAC
1 GGTAAAATGAC
36339665 GATTATGCCC
Statistics
Matches: 132, Mismatches: 25, Indels: 18
0.75 0.14 0.10
Matches are distributed among these distances:
21 18 0.14
25 3 0.02
26 18 0.14
27 90 0.68
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCTTGTAG
Found at i:36339637 original size:75 final size:74
Alignment explanation
Indices: 36339496--36339637 Score: 194
Period size: 75 Copynumber: 1.9 Consensus size: 74
36339486 AATGCCCTTG
* * *
36339496 TAGGGTAAAATAACCGTAATGTCCCTGTAGAATAAATGACCGTAACGCCCTTGTAGGGTAAAATG
1 TAGGGTAAAATAACCGTAATGCCCCTGTAGAATAAATGACCGTAACGCCCCTATAGGGTAAAATG
36339561 ACCGTAATA
66 ACCGTAATA
* * * * * *
36339570 TAGGGTAAAATGATCGTACTGCCCCTGTAGGATAAAATGACCGTAATGCCCCTATCGGGTAAAAT
1 TAGGGTAAAATAACCGTAATGCCCCTGTAGAAT-AAATGACCGTAACGCCCCTATAGGGTAAAAT
36339635 GAC
65 GAC
36339638 TATAATACCC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
74 28 0.48
75 30 0.52
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (74 bp):
TAGGGTAAAATAACCGTAATGCCCCTGTAGAATAAATGACCGTAACGCCCCTATAGGGTAAAATG
ACCGTAATA
Found at i:36340057 original size:33 final size:33
Alignment explanation
Indices: 36340020--36340102 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
36340010 GCCCACACTA
* *
36340020 TTACTGTATAGGGCTAAGGCCCAGA-TTGTATTG
1 TTACTGTATAGGGCTAAGACCCAGACTT-TACTG
*
36340053 TTACTATATAGGGCTAAGACCCAGACTTTACTG
1 TTACTGTATAGGGCTAAGACCCAGACTTTACTG
* *
36340086 ATATTGTATAGGGCTAA
1 TTACTGTATAGGGCTAA
36340103 AGCACAGACT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 41 0.95
34 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (33 bp):
TTACTGTATAGGGCTAAGACCCAGACTTTACTG
Found at i:36340111 original size:33 final size:34
Alignment explanation
Indices: 36340021--36340112 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 34
36340011 CCCACACTAT
* * *
36340021 TACTGTATAGGGCTAAGGCCCAGA-TTGTATTGT
1 TACTGTATAGGGCTAAAGCCCAGACTTGTACTGA
*
36340054 TACTATATAGGGCT-AAGACCCAGACTT-TACTGA
1 TACTGTATAGGGCTAAAG-CCCAGACTTGTACTGA
* *
36340087 TATTGTATAGGGCTAAAGCACAGACT
1 TACTGTATAGGGCTAAAGCCCAGACT
36340113 GTTTTGCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
32 2 0.04
33 42 0.86
34 5 0.10
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (34 bp):
TACTGTATAGGGCTAAAGCCCAGACTTGTACTGA
Found at i:36341359 original size:40 final size:40
Alignment explanation
Indices: 36341221--36341351 Score: 181
Period size: 40 Copynumber: 3.3 Consensus size: 40
36341211 TATCTTGCAT
* * * *
36341221 ACTAAGTGCCATACATAGCCGAAGCTATCTAAAATCACAC
1 ACTAAGTGCCATATATAGCCGAAGCTATATCAAATCGCAC
**
36341261 ACTAAGTAACATATATAGCCGAAGCTATATCAAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATATCAAATCGCAC
* * *
36341301 ACTAAGTGCCATATATAGCCGAAGTTATGTCGAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATATCAAATCGCAC
36341341 ACTAAGTGCCA
1 ACTAAGTGCCA
36341352 CAAATAGCTG
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.22
Consensus pattern (40 bp):
ACTAAGTGCCATATATAGCCGAAGCTATATCAAATCGCAC
Found at i:36345093 original size:40 final size:40
Alignment explanation
Indices: 36345010--36345272 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36345000 TTGAATGCTG
* * * * * *
36345010 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
36345050 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
36345090 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
36345130 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
36345170 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36345210 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36345249 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36345273 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:36345292 original size:79 final size:80
Alignment explanation
Indices: 36345049--36345307 Score: 247
Period size: 80 Copynumber: 3.3 Consensus size: 80
36345039 AAGTGAATAT
* * * * * *
36345049 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
36345113 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
** * *
36345129 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
36345194 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
36345209 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
36345273 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
36345288 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
36345308 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:36352033 original size:23 final size:23
Alignment explanation
Indices: 36351974--36352035 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 23
36351964 TTTAAAGAGG
*
36351974 TATAATGCTCTCCTTTTTAATTGATA
1 TATAATGCT-TCC--TTTAACTGATA
36352000 TA-ACA-GC-TCCTTTAACTGATA
1 TATA-ATGCTTCCTTTAACTGATA
36352021 TATAATGCTTCCTTT
1 TATAATGCTTCCTTT
36352036 GTATGTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
21 13 0.42
22 3 0.10
23 9 0.29
25 3 0.10
26 3 0.10
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.45
Consensus pattern (23 bp):
TATAATGCTTCCTTTAACTGATA
Found at i:36352145 original size:14 final size:14
Alignment explanation
Indices: 36352128--36352167 Score: 80
Period size: 14 Copynumber: 2.9 Consensus size: 14
36352118 CACCTGCAAT
36352128 CAAACACATTAAAA
1 CAAACACATTAAAA
36352142 CAAACACATTAAAA
1 CAAACACATTAAAA
36352156 CAAACACATTAA
1 CAAACACATTAA
36352168 TCACATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (14 bp):
CAAACACATTAAAA
Found at i:36354471 original size:38 final size:38
Alignment explanation
Indices: 36354428--36354504 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
36354418 TTTAAAAAGA
36354428 ATAAATTCAGCATTTAAAATTTCTTTAAGGAGATGATG
1 ATAAATTCAGCATTTAAAATTTCTTTAAGGAGATGATG
* *
36354466 ATAAATTCAGCATTTAGAATTTCTTTAAGGAGGTGATG
1 ATAAATTCAGCATTTAAAATTTCTTTAAGGAGATGATG
36354504 A
1 A
36354505 CTATTCGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (38 bp):
ATAAATTCAGCATTTAAAATTTCTTTAAGGAGATGATG
Found at i:36355788 original size:20 final size:19
Alignment explanation
Indices: 36355763--36355802 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
36355753 CCCTCATGAT
36355763 CCACTTTTCATGCC-TTTTTC
1 CCACTTTT--TGCCATTTTTC
36355783 CCACTTTTTGCCATTTTTC
1 CCACTTTTTGCCATTTTTC
36355802 C
1 C
36355803 TTCCCTTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.10, C:0.35, G:0.05, T:0.50
Consensus pattern (19 bp):
CCACTTTTTGCCATTTTTC
Found at i:36356974 original size:18 final size:18
Alignment explanation
Indices: 36356947--36356989 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
36356937 TATGATTTGC
*
36356947 ATGTTAAGCATATTGACT
1 ATGTTGAGCATATTGACT
*
36356965 ATGTTGAGCATGTTGACT
1 ATGTTGAGCATATTGACT
*
36356983 GTGTTGA
1 ATGTTGA
36356990 CTATAAATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (18 bp):
ATGTTGAGCATATTGACT
Found at i:36357293 original size:63 final size:63
Alignment explanation
Indices: 36357126--36357323 Score: 175
Period size: 63 Copynumber: 3.1 Consensus size: 63
36357116 GCAATATTTA
* * * * * * * ** * *
36357126 GCTTGGCCACAACGTTATTCAGTTGCTTGTCCACAACATATAGCTTATCTAAAATATTGAGTG
1 GCTTAGCCACAACATTATTGAATAGCTTATCCACAACGTGCAGCTTGTCTATAATATTGAGTG
* * *
36357189 GCTTGGCCACAACATTATTGAATGGCTTATCCAGAACGTGCAGCTTGTCTATAATATTGAGTG
1 GCTTAGCCACAACATTATTGAATAGCTTATCCACAACGTGCAGCTTGTCTATAATATTGAGTG
* * * * * *
36357252 GCTTAGCCCCAACATTATTGAGTAGTTTGA-CCACAATGTGCAGCTTGTCTGCT-ATATTTAGTG
1 GCTTAGCCACAACATTATTGAATAGCTT-ATCCACAACGTGCAGCTTGTCT-ATAATATTGAGTG
*
36357315 GCTTGGCCA
1 GCTTAGCCA
36357324 TAATGTGGTG
Statistics
Matches: 111, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
63 109 0.98
64 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (63 bp):
GCTTAGCCACAACATTATTGAATAGCTTATCCACAACGTGCAGCTTGTCTATAATATTGAGTG
Found at i:36359444 original size:60 final size:59
Alignment explanation
Indices: 36359330--36359513 Score: 208
Period size: 60 Copynumber: 3.1 Consensus size: 59
36359320 GTAATGGGAA
* * * * *
36359330 TGAT-CCTGGTCTCAATGATAATATGAATGGCCAAGATGTTAATCCCCCTGTTCGTAGGG
1 TGATACCTGGTCTAAATGATAAT-TGAATGGTCAAGATGTTGATCCTCCTATTCGTAGGG
* * * * *
36359389 TGATACCTGGTGTGAATGATAACTTGAATGGTCAAGACGCTGATCCTCCTATTCGTAGCG
1 TGATACCTGGTCTAAATGATAA-TTGAATGGTCAAGATGTTGATCCTCCTATTCGTAGGG
* * * *
36359449 TGATACCTAGTCTAAAGGATAATTTGAATGGTCAGGATGTTGATCCTCCTATTCATAGGG
1 TGATACCTGGTCTAAATGATAA-TTGAATGGTCAAGATGTTGATCCTCCTATTCGTAGGG
36359509 TGATA
1 TGATA
36359514 GATGGCTGAG
Statistics
Matches: 104, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
59 4 0.04
60 99 0.95
61 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (59 bp):
TGATACCTGGTCTAAATGATAATTGAATGGTCAAGATGTTGATCCTCCTATTCGTAGGG
Found at i:36368477 original size:30 final size:30
Alignment explanation
Indices: 36368422--36368496 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
36368412 ATGATTTAAT
* * *
36368422 GCTCAGA-GAAAATTTTTGTTGATAAATTA
1 GCTCAGATGAAAGTATTTGTTCATAAATTA
36368451 GCTCAGATGAAAGTATTTGTTCATAAATTA
1 GCTCAGATGAAAGTATTTGTTCATAAATTA
*
36368481 GCTCATATGAAAGTAT
1 GCTCAGATGAAAGTAT
36368497 AATTTCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 7 0.17
30 34 0.83
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.36
Consensus pattern (30 bp):
GCTCAGATGAAAGTATTTGTTCATAAATTA
Found at i:36376226 original size:18 final size:18
Alignment explanation
Indices: 36376197--36376329 Score: 77
Period size: 18 Copynumber: 7.6 Consensus size: 18
36376187 GTGCGAGCGA
36376197 GAAAATGAAAAAGAAATT
1 GAAAATGAAAAAGAAATT
36376215 GCAAAA-GAAAAAGAAATT
1 G-AAAATGAAAAAGAAATT
*
36376233 GAAAAACTGAGAGAA-AAA--
1 G-AAAA-TGA-AAAAGAAATT
*
36376251 GAAAATG---AAGAAA-A
1 GAAAATGAAAAAGAAATT
36376265 GAAAATTGAAAAAGAAATT
1 GAAAA-TGAAAAAGAAATT
* *
36376284 GAGATTGAGAAAA-AAATT
1 GAAAATGA-AAAAGAAATT
* **
36376302 GAAAAAGAAAAAGATGTT
1 GAAAATGAAAAAGAAATT
*
36376320 GAAAAAGAAA
1 GAAAATGAAA
36376330 CGAAAGGAAA
Statistics
Matches: 92, Mismatches: 10, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
12 2 0.02
13 3 0.03
14 5 0.05
15 2 0.02
16 2 0.02
17 8 0.09
18 51 0.55
19 11 0.12
20 5 0.05
21 3 0.03
ACGTcount: A:0.65, C:0.02, G:0.20, T:0.14
Consensus pattern (18 bp):
GAAAATGAAAAAGAAATT
Found at i:36376236 original size:12 final size:12
Alignment explanation
Indices: 36376221--36376285 Score: 53
Period size: 12 Copynumber: 5.2 Consensus size: 12
36376211 AATTGCAAAA
36376221 GAAAAAGAAATT
1 GAAAAAGAAATT
*
36376233 GAAAAACTGAGA--
1 GAAAAA--GAAATT
*
36376245 GAAAAAGAAAAT
1 GAAAAAGAAATT
36376257 GAAGAAAAGAAAATT
1 G-A-AAAAG-AAATT
36376272 GAAAAAGAAATT
1 GAAAAAGAAATT
36376284 GA
1 GA
36376286 GATTGAGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
10 3 0.07
12 20 0.47
13 6 0.14
14 9 0.21
15 5 0.12
ACGTcount: A:0.66, C:0.02, G:0.20, T:0.12
Consensus pattern (12 bp):
GAAAAAGAAATT
Found at i:36378263 original size:16 final size:16
Alignment explanation
Indices: 36378242--36378272 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36378232 TGTGTCTTGC
36378242 TGCTGTTGTTTAATGT
1 TGCTGTTGTTTAATGT
36378258 TGCTGTTGTTTAATG
1 TGCTGTTGTTTAATG
36378273 CAGAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.06, G:0.26, T:0.55
Consensus pattern (16 bp):
TGCTGTTGTTTAATGT
Found at i:36381939 original size:23 final size:23
Alignment explanation
Indices: 36381879--36381940 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 23
36381869 TTTAAAGAGG
*
36381879 TATAATGCTCTCCTTTTTAATTGATA
1 TATAATGCTC-CC--TTTAAATGATA
36381905 TA-ACA-GCT-CCTTTAAATGATA
1 TATA-ATGCTCCCTTTAAATGATA
36381926 TATAATGCTCCCTTT
1 TATAATGCTCCCTTT
36381941 GTATGTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
21 13 0.42
22 4 0.13
23 7 0.23
25 4 0.13
26 3 0.10
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (23 bp):
TATAATGCTCCCTTTAAATGATA
Found at i:36382362 original size:53 final size:53
Alignment explanation
Indices: 36382276--36382391 Score: 187
Period size: 53 Copynumber: 2.2 Consensus size: 53
36382266 ATTAAATTAA
* * *
36382276 AATTCAGCTTGTAATAAATTACCATGCATGCTTAGTAAGCTGAATGAGCTTGT
1 AATTAAGCTTGCAATAAATTACCATGCACGCTTAGTAAGCTGAATGAGCTTGT
* *
36382329 AATTTAGCTTGCAATAAATTGCCATGCACGCTTAGTAAGCTGAATGAGCTTGT
1 AATTAAGCTTGCAATAAATTACCATGCACGCTTAGTAAGCTGAATGAGCTTGT
36382382 AATTAAGCTT
1 AATTAAGCTT
36382392 TATTTTGCAC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 58 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (53 bp):
AATTAAGCTTGCAATAAATTACCATGCACGCTTAGTAAGCTGAATGAGCTTGT
Found at i:36384120 original size:18 final size:18
Alignment explanation
Indices: 36384098--36384143 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
36384088 CTCTCACTCT
*
36384098 CTTTTTCTTTTTCACTTTG
1 CTTTTTCTTTTTCA-ATTG
*
36384117 -TTTTTCATTTTCAATTG
1 CTTTTTCTTTTTCAATTG
36384134 CTTTTTCTTT
1 CTTTTTCTTT
36384144 ATTTTCTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.09, C:0.17, G:0.04, T:0.70
Consensus pattern (18 bp):
CTTTTTCTTTTTCAATTG
Found at i:36384128 original size:57 final size:55
Alignment explanation
Indices: 36384031--36384139 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 55
36384021 CTTTTTCTTT
*
36384031 TTCTCTCATTTCTTTTTTTTCTTACTTTTTATTTCATTTTCAATCT-CTTTTTGCA
1 TTCTCTCATCTCTTTTTTTTCTTACTTTTTATTTCATTTTCAAT-TGCTTTTTGCA
36384086 TTCTCTCACTCTCTTTTTCTTT-TTCACTTTGTT-TTTCATTTTCAATTGCTTTTT
1 TTCTCTCA-TCTCTTTTT-TTTCTT-ACTTT-TTATTTCATTTTCAATTGCTTTTT
36384140 CTTTATTTTC
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
55 8 0.17
56 11 0.23
57 27 0.56
58 2 0.04
ACGTcount: A:0.11, C:0.21, G:0.03, T:0.65
Consensus pattern (55 bp):
TTCTCTCATCTCTTTTTTTTCTTACTTTTTATTTCATTTTCAATTGCTTTTTGCA
Found at i:36384986 original size:23 final size:23
Alignment explanation
Indices: 36384927--36384986 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 23
36384917 TTTAAGGAGG
* *
36384927 TATAATGCTCTCCTTTTAATTGATA
1 TATAATGCTC-CC-TTCAAATGATA
36384952 TA-ACA-GCT-CCTTCAAATGATA
1 TATA-ATGCTCCCTTCAAATGATA
36384973 TATAATGCTCCCTT
1 TATAATGCTCCCTT
36384987 TGTATGTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
21 12 0.41
22 6 0.21
23 4 0.14
24 4 0.14
25 3 0.10
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (23 bp):
TATAATGCTCCCTTCAAATGATA
Found at i:36388422 original size:18 final size:18
Alignment explanation
Indices: 36388399--36388439 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
36388389 TATGATTTGC
36388399 ATGTTAAGCATATTGACT
1 ATGTTAAGCATATTGACT
*
36388417 ATGTTAAGCATGTTGACT
1 ATGTTAAGCATATTGACT
36388435 ATGTT
1 ATGTT
36388440 GACTATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (18 bp):
ATGTTAAGCATATTGACT
Found at i:36388462 original size:33 final size:33
Alignment explanation
Indices: 36388425--36388496 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
36388415 CTATGTTAAG
*
36388425 CATGTTGACTATGTTGACTATAAATTTGATTCA
1 CATGTTGACTATGTTGACTATAAATCTGATTCA
* *
36388458 CATGTTGACTGTGTTGACTATAAATCTGATTCG
1 CATGTTGACTATGTTGACTATAAATCTGATTCA
36388491 CATGTT
1 CATGTT
36388497 AAGCATGCCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (33 bp):
CATGTTGACTATGTTGACTATAAATCTGATTCA
Found at i:36388729 original size:63 final size:63
Alignment explanation
Indices: 36388662--36388811 Score: 203
Period size: 63 Copynumber: 2.4 Consensus size: 63
36388652 AACTTATCTG
* * * *
36388662 CAATATTGAGTGGCGTGGCCACAACATTATTGAATGGCTTT-TCCAGAATGTGCAGCTTGTCTA
1 CAATATTGAGTGGCTTGGCCACAACATTATTGAATAG-TTTGACCACAATGTGCAGCTTGTCTA
* * * *
36388725 CAATATTGAGTGGCTTAGCCCCAACATTATTGAGTAGTTTGACCACAATGTGCAGCTTGTCTG
1 CAATATTGAGTGGCTTGGCCACAACATTATTGAATAGTTTGACCACAATGTGCAGCTTGTCTA
*
36388788 CTATATTGAGTGGCTTGGCCACAA
1 CAATATTGAGTGGCTTGGCCACAA
36388812 TGTGGTGTCT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
62 3 0.04
63 72 0.96
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (63 bp):
CAATATTGAGTGGCTTGGCCACAACATTATTGAATAGTTTGACCACAATGTGCAGCTTGTCTA
Found at i:36394463 original size:23 final size:24
Alignment explanation
Indices: 36394437--36394487 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
36394427 AACATGCCAA
* *
36394437 TTTT-AAATAAAAGAGATAACAAT
1 TTTTGAAACAAAAGAGATAAAAAT
* *
36394460 TTTTGAAACAAAATAGCTAAAAAT
1 TTTTGAAACAAAAGAGATAAAAAT
36394484 TTTT
1 TTTT
36394488 CACGCCATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (24 bp):
TTTTGAAACAAAAGAGATAAAAAT
Found at i:36398097 original size:42 final size:42
Alignment explanation
Indices: 36398050--36398132 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
36398040 AATCCCCCTG
* * *
36398050 TTCGTAGGGTGATACCTGGTGTGAATGATAACTTGAATGGTA
1 TTCGTAGGGTGATACCTAGTCTGAATGATAACCTGAATGGTA
**
36398092 TTCGTAGGGTGATGTCTAGTCTGAATGATAACCTGAATGGT
1 TTCGTAGGGTGATACCTAGTCTGAATGATAACCTGAATGGT
36398133 CAGGACAGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.34
Consensus pattern (42 bp):
TTCGTAGGGTGATACCTAGTCTGAATGATAACCTGAATGGTA
Found at i:36410920 original size:27 final size:27
Alignment explanation
Indices: 36410890--36411067 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36410880 ATATTGAGTC
* * * *
36410890 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36410917 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36410944 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36410972 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36410999 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36411026 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36411053 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36411068 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36411029 original size:82 final size:81
Alignment explanation
Indices: 36410911--36411066 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36410901 TGCTATATAA
* *
36410911 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36410976 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36410993 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36411057 CACTTAGTGC
65 CACTTAGTGC
36411067 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36421437 original size:20 final size:20
Alignment explanation
Indices: 36421412--36421469 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
36421402 TGAAGAAGTG
36421412 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** ** * * *
36421432 CCCCTGGATACACATCTGTG
1 CCCCTGTTTGTACTTCGGTA
36421452 CCCCTGTTTGTACTTCGG
1 CCCCTGTTTGTACTTCGG
36421470 CGCCCTGGAA
Statistics
Matches: 25, Mismatches: 13, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.33, G:0.21, T:0.34
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:36421486 original size:40 final size:39
Alignment explanation
Indices: 36421409--36421497 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 39
36421399 AAATGAAGAA
*
36421409 GTGCCCCTGTTTGTACTTCGGTACCCCTGGATACACATCT
1 GTGCCCCTGTTTGTACTTCGG-ACCCCTGGAAACACATCT
*
36421449 GTGCCCCTGTTTGTACTTCGG-CGCCCTGGAAAGCACATTT
1 GTGCCCCTGTTTGTACTTCGGAC-CCCTGGAAA-CACATCT
*
36421489 GTGTCCCTG
1 GTGCCCCTG
36421498 ATCGCACATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 8 0.18
40 35 0.80
ACGTcount: A:0.13, C:0.31, G:0.24, T:0.31
Consensus pattern (39 bp):
GTGCCCCTGTTTGTACTTCGGACCCCTGGAAACACATCT
Found at i:36421506 original size:20 final size:20
Alignment explanation
Indices: 36421481--36421528 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
36421471 GCCCTGGAAA
36421481 GCACATTTGTG-TCCCTGATC
1 GCACATTTGTGCT-CCTGATC
* *
36421501 GCACATTCGTGCTCCTGATT
1 GCACATTTGTGCTCCTGATC
36421521 GCAC-TTTG
1 GCACATTTG
36421529 GCGCCCCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 20 0.83
21 1 0.04
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (20 bp):
GCACATTTGTGCTCCTGATC
Found at i:36422617 original size:18 final size:18
Alignment explanation
Indices: 36422590--36422631 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
36422580 TGCTAGAATA
*
36422590 AATTAATTAAGTT-AGTTT
1 AATTAATTAA-TTCAGCTT
*
36422608 AATTAGTTAATTCAGCTT
1 AATTAATTAATTCAGCTT
36422626 AATTAA
1 AATTAA
36422632 ATGTTGAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTAATTAATTCAGCTT
Found at i:36427129 original size:12 final size:12
Alignment explanation
Indices: 36427112--36427141 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36427102 GTGGGTAGTT
36427112 ACACGGCCTAGC
1 ACACGGCCTAGC
*
36427124 ACACGGCCTGGC
1 ACACGGCCTAGC
36427136 ACACGG
1 ACACGG
36427142 GCGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:36430180 original size:24 final size:24
Alignment explanation
Indices: 36430153--36430207 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
36430143 ACATTCTCGC
*
36430153 ACTTATCTTAACATACTTATCTTA
1 ACTTATCTTAACACACTTATCTTA
**
36430177 ACTTGGCTTAACACACTTATCTTA
1 ACTTATCTTAACACACTTATCTTA
*
36430201 TCTTATC
1 ACTTATC
36430208 AGTTACATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.04, T:0.44
Consensus pattern (24 bp):
ACTTATCTTAACACACTTATCTTA
Found at i:36431949 original size:50 final size:50
Alignment explanation
Indices: 36431887--36432065 Score: 216
Period size: 50 Copynumber: 3.6 Consensus size: 50
36431877 CAATGACATA
* ** * * * * *
36431887 TCCCAGATATGGTCTTACATGGGAGTTCTAATATCGGTGCCCATGCTATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
*
36431937 TCCCAGACATGGTCTTAC-GGGGAACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGG-ACCTCTCATCTCGGTGCCAACGCCATG
* * *
36431987 TCCAAGACATGGCCTTACATGGGACCTCTCATCTCGGTGCTAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* *
36432037 TCCTAGACATGGTCTTACATGGGATCTCT
1 TCCCAGACATGGTCTTACATGGGACCTCT
36432066 TTACCCAAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 3 0.03
50 105 0.95
51 3 0.03
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
Found at i:36434069 original size:27 final size:28
Alignment explanation
Indices: 36434028--36434089 Score: 108
Period size: 27 Copynumber: 2.2 Consensus size: 28
36434018 TTCGTAACTT
*
36434028 AACTGGCGAACCCCCAAGTCACCAAACA
1 AACTGGCGAACCCCCAACTCACCAAACA
36434056 AACTGGCGAA-CCCCAACTCACCAAACA
1 AACTGGCGAACCCCCAACTCACCAAACA
36434083 AACTGGC
1 AACTGGC
36434090 TTTTTTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 23 0.70
28 10 0.30
ACGTcount: A:0.39, C:0.39, G:0.15, T:0.08
Consensus pattern (28 bp):
AACTGGCGAACCCCCAACTCACCAAACA
Found at i:36435784 original size:21 final size:21
Alignment explanation
Indices: 36435744--36435784 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
36435734 TCACACTTCA
*
36435744 ATCACATACTCATATTTGTTT
1 ATCACATACTCATATCTGTTT
36435765 ATCA-ATACTCATATCCTGTT
1 ATCACATACTCATAT-CTGTT
36435785 GAACACGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (21 bp):
ATCACATACTCATATCTGTTT
Found at i:36435913 original size:50 final size:51
Alignment explanation
Indices: 36435852--36436041 Score: 170
Period size: 51 Copynumber: 3.7 Consensus size: 51
36435842 ATTATTATCA
* *
36435852 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGATCAAA-CTT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGACCAAAGCCT
* * *
36435902 TTCGATTCACGTAGTAGCCTGT-ACATAGTACAACACACGTGACCAAAGCCT
1 TTCGATACACGTAGTAGCCT-TCACATAGTACTACACACCTGACCAAAGCCT
* * * * * * ** * *
36435953 TCCGGTACACATAATAGTCTGCACATAGTACTACACATGTGACCATTA-TCT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGACCA-AAGCCT
* * * *
36436004 ATCGATACACGTAGTAGCCTGCACTTGGTACTACACAC
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACAC
36436042 GTGTTCATAG
Statistics
Matches: 111, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
50 41 0.37
51 69 0.62
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (51 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGACCAAAGCCT
Found at i:36439327 original size:85 final size:85
Alignment explanation
Indices: 36439096--36439316 Score: 433
Period size: 85 Copynumber: 2.6 Consensus size: 85
36439086 GGCCGGCCAT
36439096 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
36439161 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
36439181 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
36439246 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
36439266 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAGACATGTTG
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTG
36439317 TGTTGGTGCA
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 135 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:36441688 original size:47 final size:47
Alignment explanation
Indices: 36441610--36442351 Score: 1142
Period size: 47 Copynumber: 15.6 Consensus size: 47
36441600 TATTTGAATA
*
36441610 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36441659 AATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36441706 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36441753 AACGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36441800 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
36441847 AATGTGAAAGTTTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
36441896 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36441943 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
36441992 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36442039 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36442088 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36442135 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36442182 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36442229 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
36442278 AATGTGAAAGTGTATATATGCGACAAGGCCGAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36442325 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36442352 TCCCGAAGGG
Statistics
Matches: 643, Mismatches: 42, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
47 456 0.71
49 187 0.29
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36441722 original size:96 final size:95
Alignment explanation
Indices: 36441610--36442351 Score: 1206
Period size: 96 Copynumber: 7.8 Consensus size: 95
36441600 TATTTGAATA
* * * *
36441610 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATGAATGTGAAA-TTGTAT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTATAT
*
36441674 ATATGTGATAAGGCCTAATAGCCGATGTGATG
64 ATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
36441706 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAG-TGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTATATAT
*
36441770 ATGTGATAAGGCCTAATAGCCGATGTGATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATG
36441800 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-TTATATA
36441865 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36441896 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT-TATATA
36441961 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
36441992 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT-TATATA
36442057 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
36442088 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-TGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTATATAT
* *
36442152 ATGTGATAAGGCCGAATGGCCAATGTGATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATG
36442182 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT-TATATA
36442247 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
36442278 AATGTGAAAGTGTATATATGCGACAAGGCCGAATGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT-TATATA
36442342 -ATGTGATAAG
65 TATGTGATAAG
36442352 TCCCGAAGGG
Statistics
Matches: 619, Mismatches: 21, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
94 234 0.38
95 2 0.00
96 383 0.62
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (95 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36441903 original size:143 final size:141
Alignment explanation
Indices: 36441610--36442351 Score: 1160
Period size: 143 Copynumber: 5.2 Consensus size: 141
36441600 TATTTGAATA
* *
36441610 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATGAATGTGAAATTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
36441675 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
36441740 GGCCGATGTGATG
129 GGCCAATGTGATG
* *
36441753 AACGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
36441818 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCCGAAT
*
36441883 GGCCGATGTGATG
129 GGCCAATGTGATG
* * * *
36441896 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
36441961 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
36442026 GGCCAATGTGATG
129 GGCCAATGTGATG
36442039 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
36442104 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
36442169 GGCCAATGTGATG
129 GGCCAATGTGATG
* *
36442182 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* *
36442247 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGACAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
36442312 GGCCAACGTGATG
129 GGCCAATGTGATG
* *
36442325 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36442352 TCCCGAAGGG
Statistics
Matches: 555, Mismatches: 36, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
141 131 0.24
143 338 0.61
145 86 0.15
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:36442133 original size:22 final size:22
Alignment explanation
Indices: 36442105--36442227 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
36442095 AAGTGTATAT
36442105 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
36442127 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
36442151 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
36442174 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
36442198 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
36442221 ATGTGAT
1 ATGTGAT
36442228 GAATGTGAAA
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 23 0.32
23 16 0.23
24 16 0.23
25 16 0.23
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:36442571 original size:37 final size:37
Alignment explanation
Indices: 36442470--36442571 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
36442460 CCGAGCTCTA
*
36442470 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
36442507 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
36442544 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
36442572 CATTTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:36448230 original size:51 final size:51
Alignment explanation
Indices: 36448106--36448292 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 51
36448096 TATCATTCGA
* * * *
36448106 TACACGTAGTAGCCTTCACATAGTACTACACACCTGATC-AAACTTTTCGG
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCAAAACTTTCCGG
* * *
36448156 TTCATGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGAC-TTCCGG
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCAAA-ACTTTCCGG
* * * * * *
36448207 TACACATAGTAGCCTCCACATAGTACTACACATGTGACCATTATCTAT-C-A
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCA-AAACTTTCCGG
* *
36448257 TACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTG
36448293 TTTATAGGCA
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
50 66 0.58
51 44 0.39
52 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (51 bp):
TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCAAAACTTTCCGG
Found at i:36453248 original size:18 final size:19
Alignment explanation
Indices: 36453220--36453255 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
36453210 CTCTTCTTCT
36453220 TCTCTCGTTTCTTTTTCAA
1 TCTCTCGTTTCTTTTTCAA
36453239 TCTCTC-TTTCTTTTTCA
1 TCTCTCGTTTCTTTTTCA
36453256 TCCGCATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.08, C:0.28, G:0.03, T:0.61
Consensus pattern (19 bp):
TCTCTCGTTTCTTTTTCAA
Found at i:36457953 original size:51 final size:50
Alignment explanation
Indices: 36457835--36458077 Score: 281
Period size: 51 Copynumber: 4.8 Consensus size: 50
36457825 AGTGATGGTT
* * * *
36457835 ACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAAT-GAAAGGTC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATAGTATGATC
* * * * * **
36457885 GCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTCCGATC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAG-TATGATC
* * *
36457936 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATATTAATGGTC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGT-ATGATC
* * *
36457987 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAAAGTTTGATC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTATGATC
* *
36458037 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAT
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
36458078 GATAATAGTT
Statistics
Matches: 160, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 3 0.02
50 75 0.47
51 82 0.51
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTATGATC
Found at i:36457960 original size:101 final size:101
Alignment explanation
Indices: 36457835--36458108 Score: 347
Period size: 101 Copynumber: 2.7 Consensus size: 101
36457825 AGTGATGGTT
* * *
36457835 ACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGA-AA-GGTCGCATGTGTAGTAC
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGTAC
* * * *
36457898 TATGTGCAGGCTACTATGCGTACCGGATAGCTCCGATC
65 TATGTGCAGGCTACTACGCGAACCGAAAAG-TCCGATC
* *
36457936 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-ATTAATGGTCACGTGTGTAGTAC
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAGTAC
* **
36458000 TATGTGCAGGCTACTACGTGAACCGAAAAGTTTGATC
65 TATGTGCAGGCTACTACGCGAACCGAAAAGTCCGATC
* * * * *
36458037 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTACT
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTACT
36458102 ATGTGCA
66 ATGTGCA
36458109 AACCACCGAA
Statistics
Matches: 151, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
99 1 0.01
100 4 0.03
101 105 0.70
102 41 0.27
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (101 bp):
ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTACT
ATGTGCAGGCTACTACGCGAACCGAAAAGTCCGATC
Done.