Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 120 of 126
Found at i:37140315 original size:17 final size:17
Alignment explanation
Indices: 37140273--37140332 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
37140263 AACGGGGAAG
* *
37140273 AAAGAAAGAAAAGAGAAG
1 AAAGAAAG-AAGGAGAAA
*
37140291 AAACAAAGAAGGAGAAA
1 AAAGAAAGAAGGAGAAA
* *
37140308 AAAGAAAGAAGAAGGAA
1 AAAGAAAGAAGGAGAAA
*
37140325 GAAGAAAG
1 AAAGAAAG
37140333 GGAAAGAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
17 28 0.80
18 7 0.20
ACGTcount: A:0.70, C:0.02, G:0.28, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAGGAGAAA
Found at i:37141178 original size:18 final size:19
Alignment explanation
Indices: 37141145--37141201 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
37141135 GAAAAAATCG
*
37141145 AAAAATTAGTGTTTTCAAA
1 AAAAATTCGTGTTTTCAAA
37141164 AAAAATTCGTG-TTTC-AA
1 AAAAATTCGTGTTTTCAAA
*
37141181 AAATATTCGTGTTTTCAAA
1 AAAAATTCGTGTTTTCAAA
37141200 AA
1 AA
37141202 TTTCGGTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 12 0.35
18 8 0.24
19 14 0.41
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.37
Consensus pattern (19 bp):
AAAAATTCGTGTTTTCAAA
Found at i:37141182 original size:17 final size:17
Alignment explanation
Indices: 37141145--37141229 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 17
37141135 GAAAAAATCG
*
37141145 AAAAATTAGTGTTTTCAAA
1 AAAAATTCGTG-TTTC-AA
37141164 AAAAATTCGTGTTTCAA
1 AAAAATTCGTGTTTCAA
*
37141181 AAATATTCGTGTTTTC-A
1 AAAAATTCGTG-TTTCAA
* *
37141198 AAAATTTCGGTGTTTCTA
1 AAAAATTC-GTGTTTCAA
**
37141216 AAATTTTCGTGTTT
1 AAAAATTCGTGTTT
37141230 TCAACAATTC
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
17 29 0.50
18 19 0.33
19 10 0.17
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (17 bp):
AAAAATTCGTGTTTCAA
Found at i:37141202 original size:18 final size:18
Alignment explanation
Indices: 37141153--37141290 Score: 108
Period size: 18 Copynumber: 7.7 Consensus size: 18
37141143 CGAAAAATTA
*
37141153 GTGTTTTCAAAAAAAATTC
1 GTGTTTTC-AAAAATATTC
37141172 GTG-TTTCAAAAATATTC
1 GTGTTTTCAAAAATATTC
37141189 GTGTTTTCAAAAAT-TTC
1 GTGTTTTCAAAAATATTC
* *
37141206 G-GTGTTTCTAAAATTTTC
1 GTGT-TTTCAAAAATATTC
* *
37141224 GTGTTTTCAACAAT-TCCC
1 GTGTTTTCAAAAATAT-TC
* * *
37141242 GTG-TTTCACAAATTTTT
1 GTGTTTTCAAAAATATTC
37141259 GTGTTTTCAAAAATTATTATC
1 GTGTTTTCAAAAA-TA-T-TC
37141280 GTG-TTTCAAAA
1 GTGTTTTCAAAA
37141291 TTCTCATGGT
Statistics
Matches: 97, Mismatches: 12, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
16 2 0.02
17 37 0.38
18 39 0.40
19 6 0.06
20 9 0.09
21 4 0.04
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (18 bp):
GTGTTTTCAAAAATATTC
Found at i:37141211 original size:35 final size:34
Alignment explanation
Indices: 37141145--37141273 Score: 134
Period size: 35 Copynumber: 3.7 Consensus size: 34
37141135 GAAAAAATCG
* *
37141145 AAAA-ATTAGTGTTTTCAAAAAAAATTCGTGTTTCA
1 AAAATATTCGTGTTTTC--AAAAATTTCGTGTTTCA
*
37141180 AAAATATTCGTGTTTTCAAAAATTTCGGTGTTTCT
1 AAAATATTCGTGTTTTCAAAAATTTC-GTGTTTCA
* * *
37141215 AAAATTTTCGTGTTTTCAACAATTCCCGTGTTTCA
1 AAAATATTCGTGTTTTCAAAAATT-TCGTGTTTCA
* * *
37141250 CAAATTTTTGTGTTTTCAAAAATT
1 AAAATATTCGTGTTTTCAAAAATT
37141274 ATTATCGTGT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
34 8 0.10
35 61 0.75
36 12 0.15
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (34 bp):
AAAATATTCGTGTTTTCAAAAATTTCGTGTTTCA
Found at i:37151977 original size:7 final size:8
Alignment explanation
Indices: 37151948--37151987 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
37151938 TTATGCCTAA
37151948 AAAAACAAC
1 AAAAA-AAC
*
37151957 AAAAAAAT
1 AAAAAAAC
*
37151965 AGAAAAAC
1 AAAAAAAC
37151973 AAAAAAAC
1 AAAAAAAC
37151981 AAAAAAA
1 AAAAAAA
37151988 AGAAAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
8 22 0.81
9 5 0.19
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.03
Consensus pattern (8 bp):
AAAAAAAC
Found at i:37151995 original size:24 final size:25
Alignment explanation
Indices: 37151948--37151994 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
37151938 TTATGCCTAA
37151948 AAAAACAACAAAAAAATAGAAAAAC
1 AAAAACAACAAAAAAATAGAAAAAC
37151973 AAAAA-AACAAAAAAA-AGAAAAA
1 AAAAACAACAAAAAAATAGAAAAA
37151995 AATCAAGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 7 0.32
24 10 0.45
25 5 0.23
ACGTcount: A:0.85, C:0.09, G:0.04, T:0.02
Consensus pattern (25 bp):
AAAAACAACAAAAAAATAGAAAAAC
Found at i:37153063 original size:77 final size:77
Alignment explanation
Indices: 37152864--37153141 Score: 443
Period size: 77 Copynumber: 3.6 Consensus size: 77
37152854 TATATTTTTC
* *
37152864 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACATGT
1 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGC
37152927 CGAGGTATTTCTTTT
66 CGAGGTA--TC-TTT
* *
37152942 AAATTTCTATTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
1 -AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
37153007 CCGAGGTATCTTT
65 CCGAGGTATCTTT
* *
37153020 AATTTTTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGC
1 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGC
37153085 CGAGGTATCTTT
66 CGAGGTATCTTT
*
37153097 AATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAG
1 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
37153142 AGGCTCAACT
Statistics
Matches: 186, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
77 115 0.62
78 3 0.02
79 15 0.08
81 53 0.28
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (77 bp):
AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGC
CGAGGTATCTTT
Found at i:37153281 original size:81 final size:81
Alignment explanation
Indices: 37153146--37153541 Score: 622
Period size: 81 Copynumber: 5.0 Consensus size: 81
37153136 GGTGAGAGGC
* *
37153146 TCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTCAATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTT
37153211 CTATTTTTCAAAAAAA
66 CTATTTTTCAAAAAAA
* * *
37153227 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACATGTCAAGGTATTTCTTTTAAATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTT
37153292 CTATTTTTCAAAAAAA
66 CTATTTTTCAAAAAAA
* *
37153308 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTCTTAAATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTT
37153373 CTATTTTTCAAAAAAA
66 CTATTTTTCAAAAAAA
* *
37153389 TCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTCTTAAATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTT
37153454 CTATTTTTC--AAAAA
66 CTATTTTTCAAAAAAA
* * * * * *
37153468 TGAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGTCGCATGCCGA-G-ATAT-TTTTCAATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTT
37153530 CTATTTTTCAAA
66 CTATTTTTCAAA
37153542 GGTCAACTCA
Statistics
Matches: 293, Mismatches: 20, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
76 17 0.06
77 3 0.01
78 2 0.01
79 47 0.16
81 224 0.76
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (81 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTT
CTATTTTTCAAAAAAA
Found at i:37154684 original size:15 final size:14
Alignment explanation
Indices: 37154661--37154699 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
37154651 GAAGTGATAA
37154661 AAGAAAAAAACAGC
1 AAGAAAAAAACAGC
*
37154675 AAGAAAAAAATAGC
1 AAGAAAAAAACAGC
37154689 AAGGAAAAAAA
1 AA-GAAAAAAA
37154700 GAAAAAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.74, C:0.08, G:0.15, T:0.03
Consensus pattern (14 bp):
AAGAAAAAAACAGC
Found at i:37154717 original size:20 final size:22
Alignment explanation
Indices: 37154675--37154724 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
37154665 AAAAAACAGC
*
37154675 AAGAAAAAAATAGCAAGGAAAAA
1 AAGAAAAAAACA-CAAGGAAAAA
37154698 AAGAAAAAAACA-AAGG-AAAA
1 AAGAAAAAAACACAAGGAAAAA
37154718 AAGAAAA
1 AAGAAAA
37154725 GAAATGGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.42
21 4 0.15
23 11 0.42
ACGTcount: A:0.78, C:0.04, G:0.16, T:0.02
Consensus pattern (22 bp):
AAGAAAAAAACACAAGGAAAAA
Found at i:37154825 original size:4 final size:4
Alignment explanation
Indices: 37154816--37154868 Score: 61
Period size: 4 Copynumber: 12.2 Consensus size: 4
37154806 CTGAACAGGG
*
37154816 AAGA AAGA AAGA AAGAA AAGA GAAGA AAGA AAGA AGGAGA AAAA AAGA
1 AAGA AAGA AAGA AAG-A AAGA -AAGA AAGA AAGA A--AGA AAGA AAGA
37154864 AAGA A
1 AAGA A
37154869 GAAGGAAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
4 31 0.72
5 8 0.19
6 4 0.09
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:37154843 original size:18 final size:18
Alignment explanation
Indices: 37154816--37154883 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 18
37154806 CTGAACAGGG
37154816 AAGA-AAGAAAGAAAGAA
1 AAGAGAAGAAAGAAAGAA
37154833 AAGAGAAGAAAGAAAG-A
1 AAGAGAAGAAAGAAAGAA
* *
37154850 AGGAGAAAAAAAGAAAGAA
1 AAGAG-AAGAAAGAAAGAA
37154869 GAAG-GAAGAAA-AAAG
1 -AAGAGAAGAAAGAAAG
37154884 GGAAAAAAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 13 0.30
18 26 0.60
19 2 0.05
20 2 0.05
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AAGAGAAGAAAGAAAGAA
Found at i:37154857 original size:32 final size:32
Alignment explanation
Indices: 37154821--37154913 Score: 104
Period size: 32 Copynumber: 2.9 Consensus size: 32
37154811 CAGGGAAGAA
* *
37154821 AGAAAGAAAGAAAAGAGAAGAAAGAAAGAAGG
1 AGAAAAAAAGAAAAGAGAAGAAAGAAAAAAGG
*
37154853 AGAAAAAAAG-AAAGAAGAAGGAAGAAAAAAGG
1 AGAAAAAAAGAAAAG-AGAAGAAAGAAAAAAGG
37154885 -GAAAAAAAGGAAAA-AGGAA-AAAGAAAAAA
1 AGAAAAAAA-GAAAAGA-GAAGAAAGAAAAAA
37154914 TTAATTAACA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
31 22 0.42
32 28 0.53
33 3 0.06
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (32 bp):
AGAAAAAAAGAAAAGAGAAGAAAGAAAAAAGG
Found at i:37154896 original size:21 final size:22
Alignment explanation
Indices: 37154816--37154882 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 22
37154806 CTGAACAGGG
*
37154816 AAGAAAG-A-AAGAAAGAAAAGA
1 AAGAAAGAAGAAGGAAGAAAA-A
37154837 GAAGAAAGAAAGAAGG-AGAAAAA
1 -AAGAAAG-AAGAAGGAAGAAAAA
37154860 AAGAAAGAAGAAGGAAGAAAAA
1 AAGAAAGAAGAAGGAAGAAAAA
37154882 A
1 A
37154883 GGGAAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 7 0.17
22 22 0.55
23 1 0.03
24 7 0.17
25 3 0.08
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (22 bp):
AAGAAAGAAGAAGGAAGAAAAA
Found at i:37154913 original size:7 final size:7
Alignment explanation
Indices: 37154819--37154913 Score: 55
Period size: 7 Copynumber: 12.4 Consensus size: 7
37154809 AACAGGGAAG
37154819 AAAGAAA
1 AAAGAAA
37154826 GAAAGAAA
1 -AAAGAAA
* *
37154834 AGAGAAG
1 AAAGAAA
37154841 AAAGAAA
1 AAAGAAA
37154848 GAAGGAGAAAA
1 -AA--AG-AAA
37154859 AAAGAAA
1 AAAGAAA
* *
37154866 GAAGAAG
1 AAAGAAA
*
37154873 GAAGAAA
1 AAAGAAA
37154880 AAAGGGAAAA
1 AAA--G-AAA
*
37154890 AAAGGAA
1 AAAGAAA
*
37154897 AAAGGAA
1 AAAGAAA
37154904 AAAGAAA
1 AAAGAAA
37154911 AAA
1 AAA
37154914 TTAATTAACA
Statistics
Matches: 70, Mismatches: 10, Indels: 15
0.74 0.11 0.16
Matches are distributed among these distances:
7 44 0.63
8 12 0.17
9 1 0.01
10 10 0.14
11 3 0.04
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (7 bp):
AAAGAAA
Found at i:37162681 original size:23 final size:23
Alignment explanation
Indices: 37162639--37162682 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
37162629 GTAAAATCGA
*
37162639 ATAATTGTCACATGTTTATTACC
1 ATAATTGTCACATGTATATTACC
37162662 ATAATTG-CACATGTAATATTA
1 ATAATTGTCACATGT-ATATTA
37162683 TTAACCTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (23 bp):
ATAATTGTCACATGTATATTACC
Found at i:37163439 original size:3 final size:3
Alignment explanation
Indices: 37163431--37163462 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
37163421 AACCATAGCA
*
37163431 AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37163463 CTTTAACTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:37165755 original size:44 final size:44
Alignment explanation
Indices: 37165692--37165779 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
37165682 AGACCTGGTC
37165692 AACTTTGAGCAAACCCTCAAAGTTCTCCAAATACCAAAGGCTTA
1 AACTTTGAGCAAACCCTCAAAGTTCTCCAAATACCAAAGGCTTA
37165736 AACTTTGAGCAAACCCTCAAAGTTCTCCAAATACCAAAGGCTTA
1 AACTTTGAGCAAACCCTCAAAGTTCTCCAAATACCAAAGGCTTA
37165780 GGTATTGACC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (44 bp):
AACTTTGAGCAAACCCTCAAAGTTCTCCAAATACCAAAGGCTTA
Found at i:37169764 original size:12 final size:12
Alignment explanation
Indices: 37169749--37169797 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
37169739 TTTCTTTCAC
*
37169749 TTTTATTTTTTG
1 TTTTTTTTTTTG
*
37169761 TTTTGTTTTTTG
1 TTTTTTTTTTTG
37169773 TTTTTTGTTTTTG
1 TTTTTT-TTTTTG
37169786 TTTTTTTTTTTG
1 TTTTTTTTTTTG
37169798 AATCTGAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
12 22 0.65
13 12 0.35
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:37169771 original size:7 final size:7
Alignment explanation
Indices: 37169749--37169796 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
37169739 TTTCTTTCAC
*
37169749 TTTTATT
1 TTTTGTT
37169756 TTTTG--
1 TTTTGTT
37169761 TTTTGTT
1 TTTTGTT
37169768 TTTTGTT
1 TTTTGTT
37169775 TTTTG-T
1 TTTTGTT
37169781 TTTTGTT
1 TTTTGTT
37169788 TTTT-TT
1 TTTTGTT
37169794 TTT
1 TTT
37169797 GAATCTGAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
5 5 0.14
6 11 0.30
7 21 0.57
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (7 bp):
TTTTGTT
Found at i:37169771 original size:19 final size:19
Alignment explanation
Indices: 37169749--37169796 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
37169739 TTTCTTTCAC
*
37169749 TTTTATTTTTTG-TTTTGT
1 TTTTTTTTTTTGTTTTTGT
37169767 TTTTTGTTTTTTGTTTTTGT
1 TTTTT-TTTTTTGTTTTTGT
37169787 TTTTTTTTTT
1 TTTTTTTTTT
37169797 GAATCTGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 12 0.44
20 11 0.41
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTTTGTTTTTGT
Found at i:37173782 original size:98 final size:98
Alignment explanation
Indices: 37173608--37173804 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
37173598 GTACAATAAA
*
37173608 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
37173673 CCTCTAGAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
*
37173706 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
37173771 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
37173804 A
1 A
37173805 TTATTTTTTA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:37176565 original size:98 final size:98
Alignment explanation
Indices: 37176396--37176586 Score: 346
Period size: 98 Copynumber: 1.9 Consensus size: 98
37176386 TAAAATTTTA
*
37176396 AAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACGATTCCTCTA
1 AAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATTCCTCTA
*
37176461 GAATCCCAAACTCGGAATATTTCCTTTACTTTG
66 AAATCCCAAACTCGGAATATTTCCTTTACTTTG
* *
37176494 AAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCCTTTA
1 AAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATTCCTCTA
37176559 AAATCCCAAACTCGGAATATTTCCTTTA
66 AAATCCCAAACTCGGAATATTTCCTTTA
37176587 TTGTTTTTAG
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (98 bp):
AAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGAACAATTCCTCTA
AAATCCCAAACTCGGAATATTTCCTTTACTTTG
Found at i:37183228 original size:7 final size:7
Alignment explanation
Indices: 37183216--37183268 Score: 65
Period size: 7 Copynumber: 7.9 Consensus size: 7
37183206 GGCACTCTGA
37183216 AAAAATG
1 AAAAATG
37183223 AAAAATG
1 AAAAATG
*
37183230 -AGAATG
1 AAAAATG
*
37183236 AAAATTG
1 AAAAATG
*
37183243 AAAAAAG
1 AAAAATG
37183250 -AAAATG
1 AAAAATG
37183256 AAAAATG
1 AAAAATG
37183263 AAAAAT
1 AAAAAT
37183269 TGGAGAGGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
6 10 0.26
7 28 0.74
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:37183244 original size:20 final size:20
Alignment explanation
Indices: 37183216--37183268 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
37183206 GGCACTCTGA
*
37183216 AAAAATGAAAAATGAGAATG
1 AAAAATGAAAAATGAAAATG
* *
37183236 AAAATTGAAAAAAGAAAATG
1 AAAAATGAAAAATGAAAATG
37183256 AAAAATGAAAAAT
1 AAAAATGAAAAAT
37183269 TGGAGAGGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAATG
Found at i:37184726 original size:44 final size:44
Alignment explanation
Indices: 37184678--37184881 Score: 157
Period size: 44 Copynumber: 4.6 Consensus size: 44
37184668 AGCCACAAAC
*
37184678 CTTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATGCAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAATATGCAAGT
* * * ** *
37184722 CTTATCTCCCTGAGGTTATAGTGGAGTAGACCGAAGAAT-TTC-AGAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAG---GTTGAATATGCAAG-T
* * * * * *
37184768 CTTATCTCCCTG-AGATTACAGAGGAGCAGATCGAAGCCACG-AA-C
1 CTTATCTCCCTGAAG-TTACAGTGGAGCAGGTTGAA--TATGCAAGT
* * *
37184812 CTTATCTTCCTGAAGTTATAGTGGGGCAGGTTGAATATGCAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAATATGCAAGT
*
37184856 CTTATCTCCCTGAGGTTACAGTGGAG
1 CTTATCTCCCTGAAGTTACAGTGGAG
37184882 TAGACCGAAG
Statistics
Matches: 117, Mismatches: 31, Indels: 24
0.68 0.18 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
44 73 0.62
45 5 0.04
46 27 0.23
47 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAATATGCAAGT
Found at i:37184801 original size:134 final size:135
Alignment explanation
Indices: 37184631--37185371 Score: 577
Period size: 134 Copynumber: 5.6 Consensus size: 135
37184621 TAAAATAAAG
* * *
37184631 GATCCTATCTCTCTGA-AGTTACAGAAGAGCAGATCGAAGCCA-CAAACCTTATCTCCCTGA-AG
1 GATCTTATCTCCCTGAGA-TTACAGAGGAGCAGATCGAAGCCATCAAACCTTATCTCCCTGAGA-
* *
37184693 TTACAGTGGGGCAGGTTGAATATGCAAGTCTTATCTCCCTGAGGTTATAGTGGAGTAGACCGAAG
64 TTACAGTGGAGCAGGTTGAATATGCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG
37184758 AATTTCA
129 AATTTCA
* *
37184765 GATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCA-CGAACCTTATCTTCCTGA-AGT
1 GATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCATCAAACCTTATCTCCCTGAGA-T
* *
37184828 TATAGTGGGGCAGGTTGAATATGCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA
65 TACAGTGGAGCAGGTTGAATATGCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA
37184893 ATTTCA
130 ATTTCA
* * * * * *
37184899 GATATTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT-AATCC-TATCTCTCTGAGAT
1 GATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCA-TCAAACCTTATCTCCCTGAGAT
** * * * * *
37184962 TACAGTGGAGC-GGATT-AA-AACCAAAAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC--
65 TACAGTGGAGCAGG-TTGAATATGC--AAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
*
37185022 -GCA--TCA
127 AGAATTTCA
* * * * * * *
37185028 GATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTCAGATCTTTATCTCCCTGAG
1 GATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCA--TCA-AACCTTATCTCCCTGAG
* * * * * * **
37185092 ATTACAGCGGAGCAGATTGAAGCTA-GTAA-TCCTATCTCTCTGAGATTACAGTGGAACAGACCG
63 ATTACAGTGGAGCAGGTTGAA--TATGCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCG
37185155 AAGAATTTCA
126 AAGAATTTCA
* * * * * *
37185165 GATCTTATCTCCCTGAGATGACAGCGGAGCAGATTGAAGCTAGT-AATCC-TATCTCTCTGAGAT
1 GATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCA-TCAAACCTTATCTCCCTGAGAT
** * * ** *
37185228 TACAGTGGAGC-GGATT-AA-AACCAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATC--
65 TACAGTGGAGCAGG-TTGAATATGC-AAG-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGA
*
37185288 -GCA--TCA
127 AGAATTTCA
* * * * * * * *
37185294 GATCTTATTTCCTTGAGATTACAGTGGAACAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGA
1 GATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCA--TCAAACCTTATCTCCCTGAGA
37185358 TTACAGTGGAGCAG
64 TTACAGTGGAGCAG
37185372 ATTAAAGCTA
Statistics
Matches: 493, Mismatches: 83, Indels: 64
0.77 0.13 0.10
Matches are distributed among these distances:
128 2 0.00
129 73 0.15
130 4 0.01
131 31 0.06
132 56 0.11
133 12 0.02
134 265 0.54
135 10 0.02
136 2 0.00
137 37 0.08
138 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (135 bp):
GATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCATCAAACCTTATCTCCCTGAGATT
ACAGTGGAGCAGGTTGAATATGCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAA
TTTCA
Found at i:37184972 original size:44 final size:44
Alignment explanation
Indices: 37184766--37185418 Score: 320
Period size: 44 Copynumber: 14.8 Consensus size: 44
37184756 AGAATTTCAG
* * * *
37184766 ATCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCACG-A
1 ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTA-GTA
* * * * *
37184810 ACCTTATCT-TCCTGA-AGTTATAGTGGGGCAGGTTGAA--TATGCA
1 ATCTTATCTCT-CTGAGA-TTACAGTGGAGCAGATTGAAGCTA-GTA
* * * ** * *
37184853 AGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTCA
1 A-TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT-A
* * *
37184899 GATATTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 -ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * * * **
37184944 ATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAAAA
1 ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * * *
37184988 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG--
1 ATCTTATCTCTCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGTA
* * * ** * *
37185029 ATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTCA
1 ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT-A
* *
37185074 GATCTTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 -ATC-TTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * ** * *
37185120 ATCCTATCTCTCTGAGATTACAGTGGAACAGACCGAAG-AATTTCA
1 ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT-A
* * *
37185165 GATCTTATCTCCCTGAGATGACAGCGGAGCAGATTGAAGCTAGTA
1 -ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * * * *
37185210 ATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCA-AA
1 ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
** * * * *
37185253 GATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATC-AG--
1 -ATCTTATCTCTCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGTA
* * ** * *
37185295 ATCTTATTTC-CTTGAGATTACAGTGGAACAGACCGAAG-AATTTCA
1 ATCTTATCTCTC-TGAGATTACAGTGGAGCAGATTGAAGCTA-GT-A
* *
37185340 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCTAGTA
1 -ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* *
37185385 ATCCTATCT-TCTTGAGATTACAGTGGAGCGGATT
1 ATCTTATCTCTC-TGAGATTACAGTGGAGCAGATT
37185419 AAAATAAAGG
Statistics
Matches: 455, Mismatches: 116, Indels: 76
0.70 0.18 0.12
Matches are distributed among these distances:
40 1 0.00
41 59 0.13
42 3 0.01
43 10 0.02
44 235 0.52
45 9 0.02
46 101 0.22
47 36 0.08
48 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
Found at i:37185175 original size:266 final size:265
Alignment explanation
Indices: 37184858--37185411 Score: 948
Period size: 266 Copynumber: 2.1 Consensus size: 265
37184848 ATGCAAGTCT
* * ** *
37184858 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATATTATCTCCCTGAGATTACAG
1 TATCTCTCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATATTATCTCCCTGAGATGACAG
37184923 CGGAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAAAA
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAAAA
* *
37184988 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATCTTATCTCCCTGAGGTTACAGT
131 ATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGATCTTATCTCCCTGAGATTACAGT
** *
37185053 GGAGTAGACCGAAGAATTTCAGATCTTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG
196 GGAACAGACCGAAGAATTTCAGATC-TTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAG
37185118 TAATCC
260 TAATCC
*
37185124 TATCTCTCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATGACAG
1 TATCTCTCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATATTATCTCCCTGAGATGACAG
*
37185189 CGGAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAAAG
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAAAA
* *
37185254 ATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGATCTTATTTCCTTGAGATTACAGT
131 ATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGATCTTATCTCCCTGAGATTACAGT
*
37185319 GGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCTAGT
196 GGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGT
37185384 AATCC
261 AATCC
37185389 TATCT-TCTTGAGATTACAGTGGA
1 TATCTCTC-TGAGATTACAGTGGA
37185412 GCGGATTAAA
Statistics
Matches: 272, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
264 2 0.01
265 63 0.23
266 207 0.76
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (265 bp):
TATCTCTCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATATTATCTCCCTGAGATGACAG
CGGAGCAGATTGAAGCTAGTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAACCAAAA
ATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGATCTTATCTCCCTGAGATTACAGT
GGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGT
AATCC
Found at i:37185330 original size:175 final size:175
Alignment explanation
Indices: 37185124--37185493 Score: 591
Period size: 175 Copynumber: 2.1 Consensus size: 175
37185114 CTAGTAATCC
*
37185124 TATCTCTCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATGACAG
1 TATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATGACAG
*
37185189 CGGAGCAGATTGAAGCTAGTAATCCTATC-TCTCTGAGATTACAGTGGAGCGGATTAAAACCAAA
66 CGGAGCAGATTAAAGCTAGTAATCCTATCTTCT-TGAGATTACAGTGGAGCGGATTAAAA-CAAA
*
37185253 -GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGATCT
129 GGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCATCAGATCT
* * *
37185299 TATTTCCTTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
1 TATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATGACAG
* *
37185364 TGGAGCAGATTAAAGCTAGTAATCCTATCTTCTTGAGATTACAGTGGAGCGGATTAAAATAAAGG
66 CGGAGCAGATTAAAGCTAGTAATCCTATCTTCTTGAGATTACAGTGGAGCGGATTAAAACAAAGG
* * * * *
37185429 ATCTTATCTCTCTAAATTTTCAGTAGAGTAGATCGTATCAGGTCT
131 ATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCATCAGATCT
37185474 TATCTCCCTGAGATTACAGT
1 TATCTCCCTGAGATTACAGT
37185494 AATGAAGTAG
Statistics
Matches: 178, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
174 3 0.02
175 172 0.97
176 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (175 bp):
TATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATGACAG
CGGAGCAGATTAAAGCTAGTAATCCTATCTTCTTGAGATTACAGTGGAGCGGATTAAAACAAAGG
ATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCATCAGATCT
Found at i:37185573 original size:44 final size:44
Alignment explanation
Indices: 37185521--37186059 Score: 369
Period size: 44 Copynumber: 12.6 Consensus size: 44
37185511 CCACCAGTCC
**
37185521 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGCCAGATCT
* ** *
37185565 TATCTCCCTAAGCAGTAGTGGAGCAGGTGAAAGATGGTAGATAT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGCCAGATCT
* *
37185609 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAA-ATGCCAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTC-AAAGATGCCAGATCT
* * * * * * ** *** *
37185653 TATTTTCCTAAGTAGTGGTGAAGCAGATTTAAGCCACCAG-TCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGCCAGATCT
* ** *
37185696 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGGTGTTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGCCAGATCT
*
37185740 TATCTCCCTAAGCAGTAGTGGAGCAGATC---GCA--CCA-AGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAG-ATGCCAGA-TCT
* ** *
37185780 TATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCA-AAGATGCCAGATCT
** * *
37185823 TATCTCCCTAAAGTTGCAGTGGAGC-GGATTAAA-AT-CACAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGG-TCAAAGATGC-CAGATCT
* *
37185867 TATCTCCCTAAGCAGTAGTGGAGCAGATC--ACA--CCA-AGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGCCAGA-TCT
** *
37185907 TATCTCCCTAAGCAGTAGTGGAGCA-GTCAGAAGAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCA-AAGATGCCAGATCT
** * *
37185950 TATCTCCCTAAAGTTGCAGTGGAGC-GGATTAAA-AT-CACAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGG-TCAAAGATGC-CAGATCT
* *
37185994 TATCTCCCTAAGCAGTAGTGGAGCAGATC--ACA--CCA-AGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGCCAGA-TCT
37186034 TATCTCCCTAAGCAGTAGTGGAGCAG
1 TATCTCCCTAAGCAGTAGTGGAGCAG
37186060 ACAGAAGAAA
Statistics
Matches: 396, Mismatches: 67, Indels: 68
0.75 0.13 0.13
Matches are distributed among these distances:
39 6 0.02
40 89 0.22
41 5 0.01
42 7 0.02
43 86 0.22
44 197 0.50
45 6 0.02
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (44 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGCCAGATCT
Found at i:37185871 original size:127 final size:127
Alignment explanation
Indices: 37185734--37186170 Score: 716
Period size: 127 Copynumber: 3.4 Consensus size: 127
37185724 CAAAGGTGTT
* *
37185734 AGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGCACCAAGTCTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGT
37185799 GGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCAC
66 GGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCAC
37185861 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGT
*
37185926 GGAGCAGTCAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCAC
66 GGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCAC
37185988 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGT
* ** * *
37186053 GGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTCACAGTGGAGCGGATTAAAAACAA
66 GGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCAC
* * * * *
37186115 AGATCTTATCTCTCTGAAGTAGCAGTAGAGCAGAT-AGCATCC-AGCCTTATCTCCCT
1 AGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCA-CA-CCAAGTCTTATCTCCCT
37186171 GAAGTTACAG
Statistics
Matches: 293, Mismatches: 14, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
127 260 0.89
128 31 0.11
129 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (127 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACACCAAGTCTTATCTCCCTAAGCAGTAGT
GGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCAC
Found at i:37186125 original size:44 final size:43
Alignment explanation
Indices: 37185521--37186149 Score: 351
Period size: 44 Copynumber: 14.7 Consensus size: 43
37185511 CCACCAGTCC
* * ****
37185521 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAA-AACACAGATCT
* * **** *
37185565 TATCTCCCTAAGCAGTAGTGGAGCAGGTGAAAGATGGTAGATAT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAA-AACACAGATCT
* * *
37185609 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGC-CAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGAT-TAAAA-ACACAGATCT
* * * * * * ** *
37185653 TATTTTCCTAAGTAGTGGTGAAGCAGATTTAAGCCACCAG-TCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACA-CAGATCT
* * ***** *
37185696 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGGTGTTAGATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAA-AACACAGATCT
*** *
37185740 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCGCACCA-AG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
** *
37185780 TATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAC-CA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGA-TTAA-AAACACAGATCT
** * * *
37185823 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCACAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
* * *
37185867 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCACACCA-AG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
* *
37185907 TATCTCCCTAAGCAGTAGTGGAGCAG-TCAGAAGAA-ACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTA-AA-AACA-CAGATCT
** * * *
37185950 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCACAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
* * *
37185994 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCACACCA-AG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
** *
37186034 TATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAC-CA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGA-TTAA-AAACACAGATCT
* * *
37186077 TATCTCCCTGAAGTCA-CAGTGGAGCGGATTAAAAACAAAGATCT
1 TATCTCCCT-AAG-CAGTAGTGGAGCAGATTAAAAACACAGATCT
* * * *
37186121 TATCTCTCTGAAGTAGCAGTAGAGCAGAT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGAT
37186150 AGCATCCAGC
Statistics
Matches: 455, Mismatches: 96, Indels: 68
0.74 0.16 0.11
Matches are distributed among these distances:
40 88 0.19
41 8 0.02
42 20 0.04
43 109 0.24
44 222 0.49
45 8 0.02
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
Found at i:37196944 original size:2 final size:2
Alignment explanation
Indices: 37196937--37196965 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37196927 ATTACAAGTA
37196937 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
37196966 AAATTCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37198541 original size:17 final size:16
Alignment explanation
Indices: 37198519--37198579 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 16
37198509 TTTAATTAAT
37198519 TTTTAAGAATTTAAAAA
1 TTTTAA-AATTTAAAAA
*
37198536 TTTTAAAAATATAAAAAA
1 TTTT-AAAAT-TTAAAAA
*
37198554 ATTTAAAATTT-AAAA
1 TTTTAAAATTTAAAAA
37198569 TTATTAAAATT
1 TT-TTAAAATT
37198580 ATTTAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 5 0.14
16 9 0.24
17 12 0.32
18 11 0.30
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
TTTTAAAATTTAAAAA
Found at i:37198542 original size:9 final size:9
Alignment explanation
Indices: 37198519--37198631 Score: 54
Period size: 9 Copynumber: 12.2 Consensus size: 9
37198509 TTTAATTAAT
*
37198519 TTTTAAGAA
1 TTTTAAAAA
37198528 -TTTAAAAA
1 TTTTAAAAA
37198536 TTTTAAAAA
1 TTTTAAAAA
* *
37198545 TATAAAAAA
1 TTTTAAAAA
*
37198554 ATTT-AAAA
1 TTTTAAAAA
37198562 -TTT-AAAA
1 TTTTAAAAA
*
37198569 TTATTAAAAT
1 TT-TTAAAAA
37198579 TATTTAAAAA
1 T-TTTAAAAA
* *
37198589 ATATAAAATTTA
1 TTTTAAAA---A
*
37198601 TTTTTAAAA
1 TTTTAAAAA
*
37198610 TTTTTAAAA
1 TTTTAAAAA
37198619 TTAATTAAAAA
1 TT--TTAAAAA
37198630 TT
1 TT
37198632 AACATTTCTA
Statistics
Matches: 80, Mismatches: 14, Indels: 18
0.71 0.12 0.16
Matches are distributed among these distances:
7 7 0.09
8 12 0.15
9 36 0.45
10 10 0.12
11 9 0.11
12 6 0.08
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:37198559 original size:35 final size:36
Alignment explanation
Indices: 37198520--37198600 Score: 105
Period size: 35 Copynumber: 2.3 Consensus size: 36
37198510 TTAATTAATT
37198520 TTTAAGAATTTAAAAATT-TTAAAAATA-TAAAAAAA
1 TTTAA-AATTTAAAAATTATTAAAAATATTAAAAAAA
* *
37198555 TTTAAAATTT-AAAATTATTAAAATTATTTAAAAAA
1 TTTAAAATTTAAAAATTATTAAAAATATTAAAAAAA
*
37198590 TATAAAATTTA
1 TTTAAAATTTA
37198601 TTTTTAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
33 6 0.15
34 13 0.32
35 21 0.52
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (36 bp):
TTTAAAATTTAAAAATTATTAAAAATATTAAAAAAA
Found at i:37198576 original size:26 final size:26
Alignment explanation
Indices: 37198526--37198587 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
37198516 AATTTTTAAG
37198526 AATTTAAAAATTTTAAAAATATAAAAA
1 AATTT-AAAATTTTAAAAATATAAAAA
* *
37198553 AATTTAAAA-TTTAAAATTATTAAAAT
1 AATTTAAAATTTTAAAAATA-TAAAAA
*
37198579 TATTTAAAA
1 AATTTAAAA
37198588 AATATAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.29
26 17 0.55
27 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
AATTTAAAATTTTAAAAATATAAAAA
Found at i:37198609 original size:20 final size:20
Alignment explanation
Indices: 37198562--37198621 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
37198552 AAATTTAAAA
37198562 TTTAAAATTATTAAAATTATT
1 TTTAAAA-TATTAAAATTATT
**
37198583 TAAAAAATA-TAAAATTTATT
1 TTTAAAATATTAAAA-TTATT
*
37198603 TTTAAAATTTTTAAAATTA
1 TTTAAAA-TATTAAAATTA
37198622 ATTAAAAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 5 0.16
20 12 0.39
21 9 0.29
22 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTAAAATATTAAAATTATT
Found at i:37198629 original size:20 final size:20
Alignment explanation
Indices: 37198560--37198631 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
37198550 AAAAATTTAA
* *
37198560 AATTTAAAATTATTAAAATT
1 AATTAAAAATTTTTAAAATT
* * *
37198580 ATTTAAAAA-ATATAAAATTT
1 AATTAAAAATTTTTAAAA-TT
* *
37198600 ATTTTTAAAATTTTTAAAATT
1 A-ATTAAAAATTTTTAAAATT
37198621 AATTAAAAATT
1 AATTAAAAATT
37198632 AACATTTCTA
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
19 5 0.13
20 18 0.46
21 10 0.26
22 6 0.15
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTAAAAATTTTTAAAATT
Found at i:37232457 original size:40 final size:40
Alignment explanation
Indices: 37232357--37232581 Score: 197
Period size: 40 Copynumber: 5.7 Consensus size: 40
37232347 GCTCCTCGTT
* * * *
37232357 CAAATGCCTTC-GAGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGA-ACTTAACCCGGATTTAGTAACTCGCA
* * *
37232397 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGAACTTAACCCGGATTTAGTAACTCGCA
* *
37232436 CGAATGCCTTCGGAACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGAACTTAACCCGGATTTAGTAACTCGCA
* ** *
37232476 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGAACTTAACCCGG-ATTTAGTAACTCGCA
* ** * * * *
37232516 CAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGAACTTAACCCGGATTTAGTAAC-TCGCA
* *
37232557 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGAACTTAACCCGGA
37232582 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
39 35 0.23
40 107 0.69
41 12 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGAACTTAACCCGGATTTAGTAACTCGCA
Found at i:37232590 original size:41 final size:41
Alignment explanation
Indices: 37232513--37232590 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37232503 TTTGTATCTC
* * *
37232513 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37232554 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37232591 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37237868 original size:50 final size:50
Alignment explanation
Indices: 37237759--37237856 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
37237749 CGGATTCTAG
37237759 TCAACT-GGGGCTTATGTGACCTTATTTGGTCCGTTACCGGCGGTATTGA
1 TCAACTGGGGGCTTATGTGACCTTATTTGGTCCGTTACCGGCGGTATTGA
*
37237808 TCAACTGGGGGCTTATTTGACCTTATTTGGTCCGTTACCGGCGGTATTG
1 TCAACTGGGGGCTTATGTGACCTTATTTGGTCCGTTACCGGCGGTATTG
37237857 TAGGTGCGGG
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 6 0.13
50 41 0.87
ACGTcount: A:0.15, C:0.20, G:0.29, T:0.36
Consensus pattern (50 bp):
TCAACTGGGGGCTTATGTGACCTTATTTGGTCCGTTACCGGCGGTATTGA
Found at i:37239119 original size:61 final size:61
Alignment explanation
Indices: 37239041--37239157 Score: 182
Period size: 61 Copynumber: 1.9 Consensus size: 61
37239031 TCGAGAGGCA
* *
37239041 CTTCGGGCCTTTTTAGACGAGATCGTGATCGACCCCCTGTGGGTACACGAGGCACTAGACC
1 CTTCGGGCCTTTTTAGACGAGATCGCGATCGACCCCCTGTGAGTACACGAGGCACTAGACC
* *
37239102 CTTCGGG-CTTTTCTAGACGAGATCGCGATCGACCCCCTGTGAGTGCACGAGTCACT
1 CTTCGGGCCTTTT-TAGACGAGATCGCGATCGACCCCCTGTGAGTACACGAGGCACT
37239158 TCGGTCGCCA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 5 0.10
61 46 0.90
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.24
Consensus pattern (61 bp):
CTTCGGGCCTTTTTAGACGAGATCGCGATCGACCCCCTGTGAGTACACGAGGCACTAGACC
Found at i:37239348 original size:15 final size:15
Alignment explanation
Indices: 37239328--37239358 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37239318 TAAATCAAAG
37239328 TGGGAAACCGGGTGC
1 TGGGAAACCGGGTGC
37239343 TGGGAAACCGGGTGC
1 TGGGAAACCGGGTGC
37239358 T
1 T
37239359 ACCACTGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.45, T:0.16
Consensus pattern (15 bp):
TGGGAAACCGGGTGC
Found at i:37242961 original size:54 final size:54
Alignment explanation
Indices: 37242879--37242986 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
37242869 AAATTTCTTA
*
37242879 AGTGGGGGAGAGTTGTGACAGCCCAAAATTGACCCTAGTCTGGAAGTGGTTTCG
1 AGTGGGGGAGAGTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCG
37242933 AGTGGGGGAGAGTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCG
1 AGTGGGGGAGAGTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCG
37242987 GGACCGCTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.24, C:0.17, G:0.36, T:0.23
Consensus pattern (54 bp):
AGTGGGGGAGAGTTGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCG
Found at i:37243285 original size:69 final size:68
Alignment explanation
Indices: 37243202--37243338 Score: 247
Period size: 69 Copynumber: 2.0 Consensus size: 68
37243192 ATGTCAAATT
*
37243202 CCCCCCTAATTAGTAGTGGCCGGCCTTGACAAGCATGGTAGACCAAGTGTGATGGGCAAGACATG
1 CCCCCCTAATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAGTGTGATGGGCAAGACATG
37243267 TCA
66 TCA
*
37243270 CCCCCCTCTATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAGTGTGATGGGCAAGACAT
1 CCCCCCT-AATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAGTGTGATGGGCAAGACAT
37243335 GTCA
65 GTCA
37243339 TAGACATGTT
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
68 7 0.11
69 59 0.89
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (68 bp):
CCCCCCTAATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAGTGTGATGGGCAAGACATG
TCA
Found at i:37244670 original size:79 final size:81
Alignment explanation
Indices: 37244534--37244718 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
37244524 TTGAATGATG
* *
37244534 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
37244598 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
37244613 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37244675 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
37244693 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37244719 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:37244732 original size:40 final size:40
Alignment explanation
Indices: 37244535--37244718 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
37244525 TGAATGATGT
* * * *
37244535 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
37244575 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
37244615 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
37244653 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37244694 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37244719 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37244740 original size:79 final size:79
Alignment explanation
Indices: 37244587--37244751 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
37244577 GGACTAAGAT
* * **
37244587 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37244652 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37244666 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37244729 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37244745 CCGAAGG
1 CCGAAGG
37244752 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37245027 original size:150 final size:150
Alignment explanation
Indices: 37244851--37245150 Score: 573
Period size: 150 Copynumber: 2.0 Consensus size: 150
37244841 TTGAATTTAG
37244851 TTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGA
1 TTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGA
* **
37244916 TCTTTGTGTATGAATAAAAGGGTTGGTAATGTGAAGTAAGTATGATATTGAAAAATTGTGTGTAT
66 TCTTTGTGTATGAATAAAAGGGTTGGTAATGTGAAGTAAGTATGACATTGAAAAATTGTGCATAT
37244981 GAAATTATCCGTTTAGCTAC
131 GAAATTATCCGTTTAGCTAC
37245001 TTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGA
1 TTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGA
37245066 TCTTTGTGTATGAATAAAAGGGTTGGTAATGTGAAGTAAGTATGACATTGAAAAATTGTGCATAT
66 TCTTTGTGTATGAATAAAAGGGTTGGTAATGTGAAGTAAGTATGACATTGAAAAATTGTGCATAT
37245131 GAAATTATCCGTTTAGCTAC
131 GAAATTATCCGTTTAGCTAC
37245151 ATGAATGCTA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (150 bp):
TTGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGA
TCTTTGTGTATGAATAAAAGGGTTGGTAATGTGAAGTAAGTATGACATTGAAAAATTGTGCATAT
GAAATTATCCGTTTAGCTAC
Found at i:37247160 original size:17 final size:17
Alignment explanation
Indices: 37247138--37247187 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
37247128 ATAGAAAGTC
37247138 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
*
37247155 AAAGATATAGGTATCAG
1 AAAGATATGGGTATCAG
37247172 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
37247188 AAATCTGGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.44, C:0.06, G:0.26, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:37276723 original size:51 final size:52
Alignment explanation
Indices: 37276663--37276771 Score: 166
Period size: 51 Copynumber: 2.1 Consensus size: 52
37276653 CACATTTTAT
* *
37276663 TTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATT-TCATTTCTCTA
1 TTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCA
* * *
37276714 TTTTCATTTTGGAGAAAACCATAATCATTTTCAAATGTTTCTCATTTCTCCA
1 TTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCA
37276766 TTTTCA
1 TTTTCA
37276772 CCAGTTATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
51 36 0.69
52 16 0.31
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.45
Consensus pattern (52 bp):
TTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCTCATTTCTCCA
Found at i:37281139 original size:27 final size:26
Alignment explanation
Indices: 37281068--37281152 Score: 116
Period size: 27 Copynumber: 3.2 Consensus size: 26
37281058 TGTGCCATAG
* *
37281068 AGGCTTCTTTATCATAGATCCCCACAA
1 AGGCTTGTTT-TCATAGATCGCCACAA
* *
37281095 AGGATTTTTTTCATAGATCGCCACAA
1 AGGCTTGTTTTCATAGATCGCCACAA
37281121 AGGCTTGGTTTTCATAGATCGCCACAA
1 AGGCTT-GTTTTCATAGATCGCCACAA
37281148 AGGCT
1 AGGCT
37281153 ACCTTTTTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
26 20 0.38
27 32 0.62
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
AGGCTTGTTTTCATAGATCGCCACAA
Found at i:37300385 original size:18 final size:17
Alignment explanation
Indices: 37300346--37300386 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
37300336 GTTAATTAAG
*
37300346 TAAAAAGGTCTAAATCA
1 TAAAAAGGACTAAATCA
*
37300363 TAAAAAGGACTAAATCG
1 TAAAAAGGACTAAATCA
37300380 TAAAAAG
1 TAAAAAG
37300387 TGTAAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (17 bp):
TAAAAAGGACTAAATCA
Found at i:37300565 original size:16 final size:16
Alignment explanation
Indices: 37300522--37300568 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
37300512 ATGGAAATTT
37300522 TTAAATGTTAATTAAG
1 TTAAATGTTAATTAAG
* *
37300538 -TAATTTGATAATTAAG
1 TTAA-ATGTTAATTAAG
37300554 TTAAATGTTAATTAA
1 TTAAATGTTAATTAA
37300569 ATAAAAGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 3 0.12
16 19 0.76
17 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (16 bp):
TTAAATGTTAATTAAG
Found at i:37305547 original size:17 final size:18
Alignment explanation
Indices: 37305525--37305558 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37305515 TTTGGGCCGA
37305525 GTGGG-CCACAAGGGCAT
1 GTGGGCCCACAAGGGCAT
*
37305542 GTGGGCCCACATGGGCA
1 GTGGGCCCACAAGGGCA
37305559 GACCACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.26, G:0.41, T:0.12
Consensus pattern (18 bp):
GTGGGCCCACAAGGGCAT
Found at i:37309562 original size:22 final size:21
Alignment explanation
Indices: 37309521--37309565 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
37309511 CAAGGATAGG
*
37309521 TTTTAATGTAATTATGGTAAT
1 TTTTAATGTAATTATAGTAAT
37309542 TTTTAAATGTTAATTA-AGTAAT
1 TTTT-AATG-TAATTATAGTAAT
37309564 TT
1 TT
37309566 GATAATTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 11 0.52
23 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (21 bp):
TTTTAATGTAATTATAGTAAT
Found at i:37309587 original size:16 final size:16
Alignment explanation
Indices: 37309544--37309590 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
37309534 ATGGTAATTT
37309544 TTAAATGTTAATTAAG
1 TTAAATGTTAATTAAG
* *
37309560 -TAATTTGATAATTAAG
1 TTAA-ATGTTAATTAAG
37309576 TTAAATGTTAATTAA
1 TTAAATGTTAATTAA
37309591 ATAAAAGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 3 0.12
16 19 0.76
17 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (16 bp):
TTAAATGTTAATTAAG
Found at i:37314832 original size:11 final size:11
Alignment explanation
Indices: 37314816--37314840 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37314806 ATTCCGTGGG
37314816 CCCCACTTAAT
1 CCCCACTTAAT
37314827 CCCCACTTAAT
1 CCCCACTTAAT
37314838 CCC
1 CCC
37314841 GTGTTTGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (11 bp):
CCCCACTTAAT
Found at i:37315646 original size:2 final size:2
Alignment explanation
Indices: 37315639--37315668 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37315629 CGAAGGGTTC
37315639 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
37315669 ATTTATCTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:37321360 original size:91 final size:91
Alignment explanation
Indices: 37321213--37321420 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
37321203 TTGATTTTAG
* *
37321213 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
37321278 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
37321305 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
37321370 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
37321396 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
37321421 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:37321389 original size:26 final size:28
Alignment explanation
Indices: 37321335--37321395 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
37321325 TATTATCAAG
* *
37321335 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
37321363 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
37321389 AATTATA
1 AATTATA
37321396 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:37321395 original size:44 final size:43
Alignment explanation
Indices: 37321253--37321395 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
37321243 GAATTTTATG
* *
37321253 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
37321297 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
37321344 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
37321388 AAATTATA
1 AAATTATA
37321396 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:37321513 original size:59 final size:57
Alignment explanation
Indices: 37321447--37321635 Score: 143
Period size: 59 Copynumber: 3.2 Consensus size: 57
37321437 ATTTTATTAA
37321447 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * * *
37321506 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
37321567 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
37321626 ATCATATATT
1 ATCATATATT
37321636 ATGATTTGAG
Statistics
Matches: 97, Mismatches: 19, Indels: 28
0.67 0.13 0.19
Matches are distributed among these distances:
54 13 0.13
55 7 0.07
56 5 0.05
57 3 0.03
59 20 0.21
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 6 0.06
66 16 0.16
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:37321544 original size:66 final size:64
Alignment explanation
Indices: 37321474--37321672 Score: 177
Period size: 66 Copynumber: 3.2 Consensus size: 64
37321464 AAATATATTT
37321474 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
37321539 G
64 G
* * * * * * **
37321540 AATATTGATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
37321594 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
37321659 G
64 G
*
37321660 AATATTGATTATT
1 AATATTAATTATT
37321673 AAGAATTTTA
Statistics
Matches: 99, Mismatches: 20, Indels: 29
0.67 0.14 0.20
Matches are distributed among these distances:
54 13 0.13
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 26 0.26
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:37321562 original size:120 final size:120
Alignment explanation
Indices: 37321436--37321733 Score: 526
Period size: 120 Copynumber: 2.5 Consensus size: 120
37321426 AATTATTTTA
* * * *
37321436 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
37321500 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
37321556 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
37321621 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
37321676 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
37321734 ATGATTAAAT
Statistics
Matches: 170, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
120 163 0.96
121 7 0.04
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:37321575 original size:61 final size:61
Alignment explanation
Indices: 37321509--37321696 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
37321499 TTATAGTATC
37321509 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
37321570 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
37321629 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
37321690 ATATATT
1 ATATATT
37321697 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 36 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:37321596 original size:15 final size:15
Alignment explanation
Indices: 37321561--37321612 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
37321551 TTAAGAATTT
*
37321561 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37321575 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37321589 TATTTAATAATAAT-
1 TATTTAATTATAATA
37321603 TATGTTAATT
1 TAT-TTAATT
37321613 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37321693 original size:59 final size:59
Alignment explanation
Indices: 37321510--37321693 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
37321500 TATAGTATCA
37321510 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * *
37321569 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATT-ATGTTAATTTA-TATTTTA-TAGTA
1 TATATTATGATTTGAGTA-AAT-TCATATAAGAAT-ATTGA--TT-ATTAAGAATTTTATTA-AA
37321627 T
59 T
37321628 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
37321689 TATAT
1 TATAT
37321694 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 9 0.09
59 19 0.20
60 8 0.08
61 14 0.15
62 9 0.09
63 12 0.13
64 6 0.06
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.49
Consensus pattern (59 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
Found at i:37321711 original size:16 final size:16
Alignment explanation
Indices: 37321690--37321731 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37321680 TTATTAAATT
*
37321690 ATATATTTTAATTATA
1 ATATATTTTAATAATA
37321706 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
37321721 AT-TATGTTTAA
1 ATATAT-TTTAA
37321732 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:37321716 original size:15 final size:15
Alignment explanation
Indices: 37321681--37321722 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37321671 TTAAGAATTT
*
37321681 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37321695 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37321709 TATTTAATAATAAT
1 TATTTAATTATAAT
37321723 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37324388 original size:24 final size:24
Alignment explanation
Indices: 37324361--37324412 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37324351 TTAGTAAGTC
*
37324361 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37324385 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37324409 AAAT
1 AAAT
37324413 CTTTTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37326355 original size:24 final size:24
Alignment explanation
Indices: 37326327--37326378 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
37326317 TTAGTAAGTC
*
37326327 AAATAAACTATACTAAAAAATGCT
1 AAATAAACTATACTAAAAAATACT
* * *
37326351 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAAAAAATACT
37326375 AAAT
1 AAAT
37326379 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (24 bp):
AAATAAACTATACTAAAAAATACT
Found at i:37334852 original size:31 final size:29
Alignment explanation
Indices: 37334814--37334890 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
37334804 TTAACGGCTC
* *
37334814 AGTGACTAAAATGTTACAATACGATAACGTA
1 AGTGACTAAAATGTAACAATAC-A-AACATA
* * *
37334845 AGTGACTAAAATATAACATTTCAAACATA
1 AGTGACTAAAATGTAACAATACAAACATA
37334874 AGTGACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
37334891 TTGAGGTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 21 0.52
30 1 0.03
31 18 0.45
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAATACAAACATA
Found at i:37339269 original size:45 final size:45
Alignment explanation
Indices: 37339201--37339319 Score: 132
Period size: 45 Copynumber: 2.6 Consensus size: 45
37339191 CATTCCCGAA
* * * *
37339201 GTAATGTCATAGTGTCTTCCAACTATGGTCTTGATTATTACCA-AT
1 GTAATGACATAGTATCTTTCAACTATGGTCTT-ATTAGTACCAGAT
* * * * *
37339246 GTGATGACATATTTTCTTTCAACTATGGTCTTATTCGTATCAGAT
1 GTAATGACATAGTATCTTTCAACTATGGTCTTATTAGTACCAGAT
*
37339291 TTAATGACATAGTATCTTTCAACTATGGT
1 GTAATGACATAGTATCTTTCAACTATGGT
37339320 TTTAGTATCT
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 7 0.11
45 54 0.89
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (45 bp):
GTAATGACATAGTATCTTTCAACTATGGTCTTATTAGTACCAGAT
Found at i:37339328 original size:22 final size:22
Alignment explanation
Indices: 37339300--37339341 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
37339290 TTTAATGACA
37339300 TAGTATCTTTCAACTATGGTTT
1 TAGTATCTTTCAACTATGGTTT
37339322 TAGTATCTTTCAACTATGGT
1 TAGTATCTTTCAACTATGGT
37339342 CTTACACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (22 bp):
TAGTATCTTTCAACTATGGTTT
Found at i:37339415 original size:44 final size:45
Alignment explanation
Indices: 37339323--37339433 Score: 161
Period size: 44 Copynumber: 2.5 Consensus size: 45
37339313 CTATGGTTTT
* * *
37339323 AGTATCTTTCAACTATGGTCTTACACATTTCTGGTTTAGTGTCGC
1 AGTATCTTTCAACTATGGTCTTACACATTTCTGGTTTAATGCCAC
* **
37339368 AGTATCTTTCAACCATGGTCTTATTCA-TTCTGGTTTAATGCCAC
1 AGTATCTTTCAACTATGGTCTTACACATTTCTGGTTTAATGCCAC
37339412 AGTATCTTTCAACTATGGTCTT
1 AGTATCTTTCAACTATGGTCTT
37339434 TCTCATTTTG
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
44 35 0.59
45 24 0.41
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (45 bp):
AGTATCTTTCAACTATGGTCTTACACATTTCTGGTTTAATGCCAC
Found at i:37339440 original size:44 final size:44
Alignment explanation
Indices: 37339323--37339485 Score: 159
Period size: 45 Copynumber: 3.7 Consensus size: 44
37339313 CTATGGTTTT
* * * * *
37339323 AGTATCTTTCAACTATGGTCTTACACATTTCTGGTTTAGTGTCGC
1 AGTATCTTTCAACTATGGTCTTTCTCA-TTCTGGTTTAATGCCAC
*
37339368 AGTATCTTTCAACCATGGTCTTAT-TCATTCTGGTTTAATGCCAC
1 AGTATCTTTCAACTATGGTCTT-TCTCATTCTGGTTTAATGCCAC
* ** *
37339412 AGTATCTTTCAACTATGGTCTTTCTCATTTTGGGTAAAATGGCA-
1 AGTATCTTTCAACTATGGTCTTTCTCATTCT-GGTTTAATGCCAC
* * *
37339456 TGATATCTTTCAATTATAGTCTTTCTCATT
1 AG-TATCTTTCAACTATGGTCTTTCTCATT
37339486 TCTCAATCCA
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.01
44 42 0.42
45 57 0.57
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.44
Consensus pattern (44 bp):
AGTATCTTTCAACTATGGTCTTTCTCATTCTGGTTTAATGCCAC
Found at i:37357324 original size:31 final size:31
Alignment explanation
Indices: 37357289--37357429 Score: 85
Period size: 31 Copynumber: 4.6 Consensus size: 31
37357279 AACTAGATTT
*
37357289 AAGGGTTTATTTAAATAAGTCAATATAGCTC
1 AAGGGTTTATTTAAATAAGACAATATAGCTC
* * * *
37357320 AAGGGTTTATCTAGATATAA-AAAAAATA-CTAT
1 AAGGGTTTATTTA-A-ATAAGACAATATAGCT-C
* * *
37357352 AAGGGCTTATTTAAATAAGCCATTATAGC-C
1 AAGGGTTTATTTAAATAAGACAATATAGCTC
** * * *
37357382 TAAGGGTTTATTTAGGTAAAAAAATATTG-T-
1 -AAGGGTTTATTTAAATAAGACAATATAGCTC
*
37357412 AAGGGCTTATTTAAATAA
1 AAGGGTTTATTTAAATAA
37357430 CTTAGTTTGA
Statistics
Matches: 80, Mismatches: 23, Indels: 16
0.67 0.19 0.13
Matches are distributed among these distances:
29 15 0.19
30 4 0.05
31 39 0.49
32 18 0.22
33 4 0.05
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (31 bp):
AAGGGTTTATTTAAATAAGACAATATAGCTC
Found at i:37357387 original size:63 final size:60
Alignment explanation
Indices: 37357288--37357429 Score: 178
Period size: 63 Copynumber: 2.3 Consensus size: 60
37357278 CAACTAGATT
* *
37357288 TAAGGGTTTATTTAAATAAGTCAATATAGCTCAAGGGTTTATCTAGATATAAAAAAAATACTA
1 TAAGGGCTTATTTAAATAAGCCAATATAGCTCAAGGGTTTATCTAG--AT-AAAAAAATACTA
* * * * *
37357351 TAAGGGCTTATTTAAATAAGCCATTATAGC-CTAAGGGTTTATTTAGGTAAAAAAATATTG
1 TAAGGGCTTATTTAAATAAGCCAATATAGCTC-AAGGGTTTATCTAGATAAAAAAATACTA
37357411 TAAGGGCTTATTTAAATAA
1 TAAGGGCTTATTTAAATAA
37357430 CTTAGTTTGA
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
60 29 0.41
61 1 0.01
62 1 0.01
63 40 0.56
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.35
Consensus pattern (60 bp):
TAAGGGCTTATTTAAATAAGCCAATATAGCTCAAGGGTTTATCTAGATAAAAAAATACTA
Found at i:37364032 original size:15 final size:15
Alignment explanation
Indices: 37364014--37364045 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
37364004 TTTTTTGTAT
*
37364014 TATTTTAATATTAAA
1 TATTTTAAAATTAAA
37364029 TATTTTAAAATTAAA
1 TATTTTAAAATTAAA
37364044 TA
1 TA
37364046 ACATTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTTAAAATTAAA
Found at i:37366465 original size:3 final size:3
Alignment explanation
Indices: 37366451--37366506 Score: 87
Period size: 3 Copynumber: 18.7 Consensus size: 3
37366441 CTGTTTACCA
37366451 AAG AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG -AAG
*
37366499 AAA AAG AA
1 AAG AAG AA
37366507 ATAGCAGTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
2 2 0.04
3 44 0.90
4 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37379679 original size:15 final size:15
Alignment explanation
Indices: 37379659--37379690 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
37379649 CATTTAATGG
37379659 ATAATTCACCAATCT
1 ATAATTCACCAATCT
37379674 ATAATTCACCAATCT
1 ATAATTCACCAATCT
37379689 AT
1 AT
37379691 CACTTTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAATTCACCAATCT
Found at i:37398509 original size:26 final size:26
Alignment explanation
Indices: 37398473--37398522 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
37398463 ATATTTTATC
37398473 AAAATTTTACTAGGGGTAAAATTGTT
1 AAAATTTTACTAGGGGTAAAATTGTT
* *
37398499 AAAATTTTACTCGTGGTAAAATTG
1 AAAATTTTACTAGGGGTAAAATTG
37398523 GGATGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (26 bp):
AAAATTTTACTAGGGGTAAAATTGTT
Found at i:37400322 original size:20 final size:20
Alignment explanation
Indices: 37400284--37400322 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37400274 AATAAATTTT
* *
37400284 AACTAATAAAATTATATAAA
1 AACTAATAAAATAAAATAAA
37400304 AACTAATAAAATAAAATAA
1 AACTAATAAAATAAAATAA
37400323 CATAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AACTAATAAAATAAAATAAA
Found at i:37417253 original size:14 final size:14
Alignment explanation
Indices: 37417234--37417264 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
37417224 TTGCTTCTTT
37417234 AGTAGCTCATAAGC
1 AGTAGCTCATAAGC
37417248 AGTAGCTCATAAGC
1 AGTAGCTCATAAGC
37417262 AGT
1 AGT
37417265 CACATATTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (14 bp):
AGTAGCTCATAAGC
Found at i:37418433 original size:3 final size:3
Alignment explanation
Indices: 37418425--37418498 Score: 139
Period size: 3 Copynumber: 24.3 Consensus size: 3
37418415 TAATGTATGT
37418425 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
37418473 ATA ATA ATA ATA ATA ATA ATA GATA A
1 ATA ATA ATA ATA ATA ATA ATA -ATA A
37418499 GGCTTTAAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 67 0.96
4 3 0.04
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:37418741 original size:19 final size:17
Alignment explanation
Indices: 37418709--37418743 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 17
37418699 ACCCATGTCA
37418709 TAATTTTTAGTATTGTT
1 TAATTTTTAGTATTGTT
37418726 TAATATTTTAGATATTGT
1 TAAT-TTTTAG-TATTGT
37418744 CATTGTTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (17 bp):
TAATTTTTAGTATTGTT
Found at i:37428468 original size:22 final size:22
Alignment explanation
Indices: 37428443--37428490 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
37428433 AAAGGTGTTT
*
37428443 AGGGTGGTG-ATTTAGAGAGTTA
1 AGGGTGGTGAATATA-AGAGTTA
*
37428465 AGGGTTGTGAATATAAGAGTTA
1 AGGGTGGTGAATATAAGAGTTA
37428487 AGGG
1 AGGG
37428491 AGATGCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.40, T:0.29
Consensus pattern (22 bp):
AGGGTGGTGAATATAAGAGTTA
Found at i:37438892 original size:30 final size:31
Alignment explanation
Indices: 37438835--37438894 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
37438825 GCCTTTTGAA
* *
37438835 AATATTTACAAAAAAAGACATCTAAATTTTT
1 AATATTTACAAAAAAAGACAACCAAATTTTT
*
37438866 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAAAGACAACCAAATTTT
37438895 GAAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.32
Consensus pattern (31 bp):
AATATTTACAAAAAAAGACAACCAAATTTTT
Found at i:37439493 original size:215 final size:215
Alignment explanation
Indices: 37439122--37439551 Score: 860
Period size: 215 Copynumber: 2.0 Consensus size: 215
37439112 TATTTAAACA
37439122 TACTAATCCCGAAAATATACCCTAAATCATTTATTTAAAAATAAAAACAAGAAAAGTTAAATATC
1 TACTAATCCCGAAAATATACCCTAAATCATTTATTTAAAAATAAAAACAAGAAAAGTTAAATATC
37439187 TGATAAATAAATGAGATTTGATCCTGTTCAATTTTATCCCCTGGTAATGTTTTAAGCGCTGAGCA
66 TGATAAATAAATGAGATTTGATCCTGTTCAATTTTATCCCCTGGTAATGTTTTAAGCGCTGAGCA
37439252 TTGACTCGAAAATTACCTCCCTTACTTTGAAGTTCGACAACTCCATATGGATAAACTCGGTGAAT
131 TTGACTCGAAAATTACCTCCCTTACTTTGAAGTTCGACAACTCCATATGGATAAACTCGGTGAAT
37439317 CGTAAACGGATAGGACCAAT
196 CGTAAACGGATAGGACCAAT
37439337 TACTAATCCCGAAAATATACCCTAAATCATTTATTTAAAAATAAAAACAAGAAAAGTTAAATATC
1 TACTAATCCCGAAAATATACCCTAAATCATTTATTTAAAAATAAAAACAAGAAAAGTTAAATATC
37439402 TGATAAATAAATGAGATTTGATCCTGTTCAATTTTATCCCCTGGTAATGTTTTAAGCGCTGAGCA
66 TGATAAATAAATGAGATTTGATCCTGTTCAATTTTATCCCCTGGTAATGTTTTAAGCGCTGAGCA
37439467 TTGACTCGAAAATTACCTCCCTTACTTTGAAGTTCGACAACTCCATATGGATAAACTCGGTGAAT
131 TTGACTCGAAAATTACCTCCCTTACTTTGAAGTTCGACAACTCCATATGGATAAACTCGGTGAAT
37439532 CGTAAACGGATAGGACCAAT
196 CGTAAACGGATAGGACCAAT
37439552 GTGATTTTAA
Statistics
Matches: 215, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 215 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (215 bp):
TACTAATCCCGAAAATATACCCTAAATCATTTATTTAAAAATAAAAACAAGAAAAGTTAAATATC
TGATAAATAAATGAGATTTGATCCTGTTCAATTTTATCCCCTGGTAATGTTTTAAGCGCTGAGCA
TTGACTCGAAAATTACCTCCCTTACTTTGAAGTTCGACAACTCCATATGGATAAACTCGGTGAAT
CGTAAACGGATAGGACCAAT
Found at i:37445052 original size:32 final size:32
Alignment explanation
Indices: 37444990--37445288 Score: 250
Period size: 32 Copynumber: 9.4 Consensus size: 32
37444980 GAATGGCTAC
* * *
37444990 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
37445021 AAGCCATCAGTAGCAGTGATATGA-CTGGCACA
1 AAGCCATCAGTAACAGTAATATGATC-GGCACA
* * * *
37445053 CAGCCATCAGTAACGGTAACATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* ** *
37445085 AAGCTATCAGTAGTAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
37445117 TAGCCATCAGTAACGGTAACATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
37445149 AAGTCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * * *
37445181 CAA-TCATCAATAATAGTGAA-ATGATCAGCACA
1 -AAGCCATCAGTAACAGT-AATATGATCGGCACA
* *
37445213 CAA-CCAT-TGATAACGGTAATATGATCGGCACA
1 -AAGCCATCAG-TAACAGTAATATGATCGGCACA
* * **
37445245 AAGCCATCAGTAACGGTACTATGATTTGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
37445277 AAGCCATCAGTA
1 AAGCCATCAGTA
37445289 GCATCGTAAC
Statistics
Matches: 212, Mismatches: 47, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
31 14 0.07
32 194 0.92
33 4 0.02
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:37445083 original size:64 final size:64
Alignment explanation
Indices: 37445010--37445291 Score: 322
Period size: 64 Copynumber: 4.4 Consensus size: 64
37445000 TACAGTAATG
37445010 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGA-CTGGCACACAGCCATCAGTAACGGTAACA
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGATC-GGCACACAGCCATCAGTAACGGTAACA
* * *
37445074 TGATTGGCACAAAGCTATCAGTAGTAGTGATATGATCGGCACATAGCCATCAGTAACGGTAACA
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAACA
* * ** * **
37445138 TGATCGGCACAAAGTCATCAGTAGCAGTGATATGATCGGCACACAATCATCAATAATAGTGAA-A
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGT-AACA
** * * * * *
37445202 TGATCAGCACACAA-CCAT-TGATAACGGTAATATGATCGGCACAAAGCCATCAGTAACGGT-AC
1 TGATTGGCACA-AAGCCATCAG-TAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAAC
37445264 TA
64 -A
*
37445266 TGATTTGCACAAAGCCATCAGTAGCA
1 TGATTGGCACAAAGCCATCAGTAGCA
37445292 TCGTAACAAA
Statistics
Matches: 180, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 3 0.02
64 170 0.94
65 6 0.03
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (64 bp):
TGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAACA
Found at i:37445179 original size:96 final size:94
Alignment explanation
Indices: 37445010--37445289 Score: 287
Period size: 96 Copynumber: 2.9 Consensus size: 94
37445000 TACAGTAATG
* * * * * *
37445010 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGA-CTGGCACACAGCCATCAGTAACGGTAACA
1 TGATCGGCACAAAGCCATCAGTAACGGTAATATGATC-GGCACAAAGCCATCAGTAACGGT-ATA
*
37445074 TGATTGGCACAAAGCTATCAGTAGTAGTGATA
64 TGATTGGCACAAAGC-ATCAGTAGTAGTGAAA
* * * * *
37445106 TGATCGGCACATAGCCATCAGTAACGGTAACATGATCGGCACAAAGTCATCAGTAGCAGTGATAT
1 TGATCGGCACAAAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGGT-ATAT
* * * *
37445171 GATCGGCACACAATCATCAATAATAGTGAAA
65 GATTGGCACA-AAGCATCAGTAGTAGTGAAA
* *
37445202 TGATCAGCACACAA-CCAT-TGATAACGGTAATATGATCGGCACAAAGCCATCAGTAACGGTACT
1 TGATCGGCACA-AAGCCATCAG-TAACGGTAATATGATCGGCACAAAGCCATCAGTAACGGTA-T
*
37445265 ATGATTTGCACAAAGCCATCAGTAG
63 ATGATTGGCACAAAG-CATCAGTAG
37445290 CATCGTAACA
Statistics
Matches: 149, Mismatches: 29, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
95 4 0.03
96 140 0.94
97 5 0.03
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (94 bp):
TGATCGGCACAAAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGGTATATG
ATTGGCACAAAGCATCAGTAGTAGTGAAA
Found at i:37445325 original size:26 final size:26
Alignment explanation
Indices: 37445291--37445344 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
37445281 CATCAGTAGC
*
37445291 ATCGTAACAAAGCTACCAGCAATAGT
1 ATCGCAACAAAGCTACCAGCAATAGT
*
37445317 ATCGCAACAAAGCTACCAGTAATAGT
1 ATCGCAACAAAGCTACCAGCAATAGT
37445343 AT
1 AT
37445345 ATGTGGCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.22, G:0.15, T:0.20
Consensus pattern (26 bp):
ATCGCAACAAAGCTACCAGCAATAGT
Found at i:37445361 original size:27 final size:26
Alignment explanation
Indices: 37445326--37445391 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
37445316 TATCGCAACA
*
37445326 AAGCTACCAGTAATAGT-ATATGTGGCC
1 AAGCTACCAGTAACAGTGAT-TGTGG-C
*
37445353 AAGCTACCAATAACAGTGATTGTGGC
1 AAGCTACCAGTAACAGTGATTGTGGC
*
37445379 AGAGCCACCAGTA
1 A-AGCTACCAGTA
37445392 CAATACTTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.06
27 29 0.88
28 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
AAGCTACCAGTAACAGTGATTGTGGC
Found at i:37445490 original size:24 final size:23
Alignment explanation
Indices: 37445459--37445541 Score: 85
Period size: 24 Copynumber: 3.5 Consensus size: 23
37445449 GCCATACTCA
37445459 AAATCAGTCATTCAAATCACAGAC
1 AAATCAGTCATTCAAA-CACAGAC
* *
37445483 AAATCAGTTATCCCAAACACAGAC
1 AAATCAGTCAT-TCAAACACAGAC
* * *
37445507 AAATCAGTCATTTAACCATAGAC
1 AAATCAGTCATTCAAACACAGAC
* *
37445530 AAAACAATCATT
1 AAATCAGTCATT
37445542 TGACCTCGAG
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
23 18 0.37
24 27 0.55
25 4 0.08
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (23 bp):
AAATCAGTCATTCAAACACAGAC
Found at i:37445617 original size:27 final size:27
Alignment explanation
Indices: 37445579--37445787 Score: 247
Period size: 27 Copynumber: 7.7 Consensus size: 27
37445569 TACCCACCAA
*
37445579 GGCATTACGGTCATTTTACCCTACAAG
1 GGCATTACGGTCATTTTACCCTACAGG
* *
37445606 GGCATTACGGTCATTTTACCTTATAGG
1 GGCATTACGGTCATTTTACCCTACAGG
* * *
37445633 GGCATTACGGCCATTTTACCCTATAAG
1 GGCATTACGGTCATTTTACCCTACAGG
* * **
37445660 AGTATTACGGTCATTTTACCCTATTGG
1 GGCATTACGGTCATTTTACCCTACAGG
* * *
37445687 GGCATTACGGTTATTTTACCTTACGGG
1 GGCATTACGGTCATTTTACCCTACAGG
* *
37445714 GGCATTATGGTCATTTTACCCTACGGG
1 GGCATTACGGTCATTTTACCCTACAGG
* *
37445741 GGTATTACGGTCATTTTACCCTACATG
1 GGCATTACGGTCATTTTACCCTACAGG
* *
37445768 GGCATTACGATTATTTTACC
1 GGCATTACGGTCATTTTACC
37445788 TATTTTAAAG
Statistics
Matches: 155, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (27 bp):
GGCATTACGGTCATTTTACCCTACAGG
Found at i:37445676 original size:81 final size:81
Alignment explanation
Indices: 37445582--37445788 Score: 288
Period size: 81 Copynumber: 2.6 Consensus size: 81
37445572 CCACCAAGGC
* *
37445582 ATTACGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCTTATAGGGGCATTACGGCCAT
1 ATTACGGTCATTTTACCCTACAAGGGCATTACGGTTATTTTACCTTACAGGGGCATTACGGCCAT
*
37445647 TTTACCCTATAAGAGT
66 TTTACCCTACAAGAGT
*** * * *
37445663 ATTACGGTCATTTTACCCTATTGGGGCATTACGGTTATTTTACCTTACGGGGGCATTATGGTCAT
1 ATTACGGTCATTTTACCCTACAAGGGCATTACGGTTATTTTACCTTACAGGGGCATTACGGCCAT
** *
37445728 TTTACCCTACGGGGGT
66 TTTACCCTACAAGAGT
* *
37445744 ATTACGGTCATTTTACCCTACATGGGCATTACGATTATTTTACCT
1 ATTACGGTCATTTTACCCTACAAGGGCATTACGGTTATTTTACCT
37445789 ATTTTAAAGT
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 110 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (81 bp):
ATTACGGTCATTTTACCCTACAAGGGCATTACGGTTATTTTACCTTACAGGGGCATTACGGCCAT
TTTACCCTACAAGAGT
Found at i:37450212 original size:10 final size:10
Alignment explanation
Indices: 37450193--37450229 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
37450183 AAATCTGTCG
37450193 AAAA-TAATC
1 AAAATTAATC
37450202 AAAATTAATC
1 AAAATTAATC
*
37450212 AAAATTAATT
1 AAAATTAATC
37450222 AAAATTAA
1 AAAATTAA
37450230 ACATGTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 4 0.15
10 22 0.85
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (10 bp):
AAAATTAATC
Found at i:37466147 original size:22 final size:22
Alignment explanation
Indices: 37466099--37466147 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
37466089 CCGACGATGG
37466099 TGGTCCAACGATGATTCGACAA
1 TGGTCCAACGATGATTCGACAA
* * * *
37466121 CGGTCCGACGATGTTTCGACGA
1 TGGTCCAACGATGATTCGACAA
37466143 TGGTC
1 TGGTC
37466148 ATTGATAGCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (22 bp):
TGGTCCAACGATGATTCGACAA
Found at i:37467559 original size:27 final size:27
Alignment explanation
Indices: 37467529--37467706 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37467519 ATATTGAGTC
* * * *
37467529 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37467556 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37467583 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37467611 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37467638 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37467665 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37467692 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37467707 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37467668 original size:82 final size:81
Alignment explanation
Indices: 37467550--37467705 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37467540 TGCTATATAA
* *
37467550 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37467615 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37467632 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37467696 CACTTAGTGC
65 CACTTAGTGC
37467706 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37475623 original size:27 final size:27
Alignment explanation
Indices: 37475593--37475770 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
37475583 ATATTGAGCC
* *
37475593 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
37475620 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
37475647 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
37475675 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37475702 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
37475729 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
37475756 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
37475771 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37475732 original size:82 final size:81
Alignment explanation
Indices: 37475614--37475769 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
37475604 TGCTATATAA
* * * *
37475614 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
37475679 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37475696 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
37475760 CCCTTAGTGC
65 CACTTAGTGC
37475770 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 16 0.25
82 48 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37477076 original size:24 final size:24
Alignment explanation
Indices: 37477014--37477077 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
37477004 GGGGGGTGAG
* *
37477014 ACCATG-TTATTTTTTTTTTCATC
1 ACCATGCTTATTATTTTTTTAATC
* * *
37477037 ACCCTTCCTT-TCATTTTTTTAATC
1 A-CCATGCTTATTATTTTTTTAATC
37477061 ACCATGCTTATTATTTT
1 ACCATGCTTATTATTTT
37477078 ATTTTTCTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
23 7 0.23
24 21 0.70
25 2 0.07
ACGTcount: A:0.19, C:0.22, G:0.03, T:0.56
Consensus pattern (24 bp):
ACCATGCTTATTATTTTTTTAATC
Found at i:37479106 original size:24 final size:24
Alignment explanation
Indices: 37479074--37479120 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
37479064 GTAAGTCTGG
37479074 TTTCTTTCTTTTTTC-CTGTTCTTA
1 TTTCTTTCTTTTTTCTC-GTTCTTA
37479098 TTTCTTTCTTTTTTCTCGTTCTT
1 TTTCTTTCTTTTTTCTCGTTCTT
37479121 CTTTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.02, C:0.21, G:0.04, T:0.72
Consensus pattern (24 bp):
TTTCTTTCTTTTTTCTCGTTCTTA
Found at i:37480443 original size:13 final size:13
Alignment explanation
Indices: 37480425--37480490 Score: 96
Period size: 13 Copynumber: 5.1 Consensus size: 13
37480415 AGTTCTTCAT
37480425 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
37480438 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
37480451 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
37480464 TGCTATGGAAAAG
1 TGCTTTTGAAAAG
37480477 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
37480490 T
1 T
37480491 TTGGTTTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 48 1.00
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.33
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:37480889 original size:234 final size:234
Alignment explanation
Indices: 37480480--37480948 Score: 911
Period size: 234 Copynumber: 2.0 Consensus size: 234
37480470 GGAAAAGTGC
37480480 TTTTGAAAAGTTTGGTTTAAAATTTGAGTGTTTAGCATTGCTGTCAAAAAGTACTTTTGAGAAAT
1 TTTTGAAAAGTTTGGTTTAAAATTTGAGTGTTTAGCATTGCTGTCAAAAAGTACTTTTGAGAAAT
*
37480545 AAAATGTCTATTTTAGACATGTTGTTATCAAGTAACAAATATGTATTTAAATAATAGTTAAATTA
66 AAAATGTCTATTTTAGACATGTTATTATCAAGTAACAAATATGTATTTAAATAATAGTTAAATTA
37480610 GTTAATATTATTATATTTTAGTAATAATATAAAAAAATTATTATAACTTGTTAATATTTTAATAT
131 GTTAATATTATTATATTTTAGTAATAATATAAAAAAATTATTATAACTTGTTAATATTTTAATAT
37480675 ATAAAATATATATTGTAAATATTTTTAATTAATAAATAT
196 ATAAAATATATATTGTAAATATTTTTAATTAATAAATAT
* *
37480714 TTTTGAAAAGTTTGGTTTAAAATTTGAGTGTTTAGCATTGTTGTCAAAAAGTATTTTTGAGAAAT
1 TTTTGAAAAGTTTGGTTTAAAATTTGAGTGTTTAGCATTGCTGTCAAAAAGTACTTTTGAGAAAT
37480779 AAAATGTCTATTTTAGACATGTTATTATCAAGTAACAAATATGTATTTAAATAATAGTTAAATTA
66 AAAATGTCTATTTTAGACATGTTATTATCAAGTAACAAATATGTATTTAAATAATAGTTAAATTA
37480844 GTTAATATTATTATATTTTAGTAATAATATAAAAAAATTATTATAACTTGTTAATATTTTAATAT
131 GTTAATATTATTATATTTTAGTAATAATATAAAAAAATTATTATAACTTGTTAATATTTTAATAT
37480909 ATAAAATATATATTGTAAATATTTTTAATTAATAAATAT
196 ATAAAATATATATTGTAAATATTTTTAATTAATAAATAT
37480948 T
1 T
37480949 AATTATTTAT
Statistics
Matches: 232, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 232 1.00
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (234 bp):
TTTTGAAAAGTTTGGTTTAAAATTTGAGTGTTTAGCATTGCTGTCAAAAAGTACTTTTGAGAAAT
AAAATGTCTATTTTAGACATGTTATTATCAAGTAACAAATATGTATTTAAATAATAGTTAAATTA
GTTAATATTATTATATTTTAGTAATAATATAAAAAAATTATTATAACTTGTTAATATTTTAATAT
ATAAAATATATATTGTAAATATTTTTAATTAATAAATAT
Found at i:37480999 original size:33 final size:32
Alignment explanation
Indices: 37480904--37481000 Score: 83
Period size: 31 Copynumber: 2.9 Consensus size: 32
37480894 TTAATATTTT
*
37480904 AATATATAAAATATATATTGTAAATATTTTTAATTA
1 AATATAT-AAATATAT-TTATAAATA--TTTAATTA
* *
37480940 ATAAATATTAAT-TATTTATAAA-ATTTAATTA
1 A-ATATATAAATATATTTATAAATATTTAATTA
37480971 GAATATATAAACTATATTT-TAAATATTTAA
1 -AATATATAAA-TATATTTATAAATATTTAA
37481001 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
31 15 0.29
32 6 0.12
33 12 0.24
34 6 0.12
35 3 0.06
36 4 0.08
37 5 0.10
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (32 bp):
AATATATAAATATATTTATAAATATTTAATTA
Found at i:37481487 original size:6 final size:6
Alignment explanation
Indices: 37481478--37481508 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
37481468 ATGAAATGAA
*
37481478 ATTTAG ATTTAG ATTCAG ATTTAG ATTTAG A
1 ATTTAG ATTTAG ATTTAG ATTTAG ATTTAG A
37481509 AAGAAAATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.45
Consensus pattern (6 bp):
ATTTAG
Found at i:37486743 original size:410 final size:414
Alignment explanation
Indices: 37485971--37486802 Score: 1528
Period size: 410 Copynumber: 2.0 Consensus size: 414
37485961 CGAAAATTCG
* *
37485971 TGCAGAACCATCAAGTGCCTGATCTTCGTAATCTTCAAGATGTGAGTGACTTCATCACTAAGTGA
1 TGCAGAACCATCAAGTGCCTGATCTTCGGAATCTTCAAGATGTGAGCGACTT-AT-AC------A
37486036 GTATTGTTATGAGCTATACGTATTTATAGTACTGTCCTTTTGAATGGTATACTCTTTGTGATTCG
58 GTATTGTTATGAGCTATACGTATTTATAGTACTGTCCTTTTGAATGGTATACTCTTTGTGATTCG
37486101 TTTAGTTCTCCTCACTCCTTTGATCTATTATATGAAGAGCGGGTTATGGATCAGAAAGCGAAGCT
123 TTTAGTTCTCCTCACTCCTTTGATCTATTATATGAAGAGCGGGTTATGGATCAGAAAGCGAAGCT
37486166 GATGAGGAAGCTGCAACAGTTACTCTGACTAGTGATCTTAGTCGAGTTAATCGTGCCTCTACAAA
188 GATGAGGAAGCTGCAACAGTTACTCTGACTAGTGATCTTAGTCGAGTTAATCGTGCCTCTACAAA
37486231 AAGCGCGGTTAAGCTTCAAGAAATTGGACCTAGAATGACTCTCCAACTCACCAAAATTGAGGGTG
253 AAGCGCGGTTAAGCTTCAAGAAATTGGACCTAGAATGACTCTCCAACTCACCAAAATTGAGGGTG
37486296 GACTATGTTCTGGTGAAGTTATGTTCAGTGAATATGGTATGTTCATCTATCCATGTGAAAACAAG
318 GACTATGTTCTGGTGAAGTTATGTTCAGTGAATATGGTATGTTCATCTATCCATGTGAAAACAAG
37486361 AGAAGAATAAGAATTTATCTCAAAAAAGAAAA
383 AGAAGAATAAGAATTTATCTCAAAAAAGAAAA
37486393 TGCAGAACCATCAAGTGCCTGATCTTCGGAATCTTCAAGATGTGAGCGAC-T-T-C-GTATTGTT
1 TGCAGAACCATCAAGTGCCTGATCTTCGGAATCTTCAAGATGTGAGCGACTTATACAGTATTGTT
*
37486454 ATGAGCTATATGTATTTATAGTACTGTCCTTTTGAATGGTATACTCTTTGTGATTCGTTTAGTTC
66 ATGAGCTATACGTATTTATAGTACTGTCCTTTTGAATGGTATACTCTTTGTGATTCGTTTAGTTC
37486519 TCCTCACTCCTTTGATCTATTATATGAAGAGCGGGTTATGGATCAGAAAGCGAAGCTGATGAGGA
131 TCCTCACTCCTTTGATCTATTATATGAAGAGCGGGTTATGGATCAGAAAGCGAAGCTGATGAGGA
37486584 AGCTGCAACAGTTACTCTGACTAGTGATCTTAGTCGAGTTAATCGTGCCTCTACAAAAAGCGCGG
196 AGCTGCAACAGTTACTCTGACTAGTGATCTTAGTCGAGTTAATCGTGCCTCTACAAAAAGCGCGG
37486649 TTAAGCTTCAAGAAATTGGACCTAGAATGACTCTCCAACTCACCAAAATTGAGGGTGGACTATGT
261 TTAAGCTTCAAGAAATTGGACCTAGAATGACTCTCCAACTCACCAAAATTGAGGGTGGACTATGT
37486714 TCTGGTGAAGTTATGTTCAGTGAATATGGTATGTTCATCTATCCATGTGAAAACAAGAGAAGAAT
326 TCTGGTGAAGTTATGTTCAGTGAATATGGTATGTTCATCTATCCATGTGAAAACAAGAGAAGAAT
*
37486779 AAGAATTTATCTCGAAAAAGAAAA
391 AAGAATTTATCTCAAAAAAGAAAA
37486803 AAGTCTCTTA
Statistics
Matches: 406, Mismatches: 4, Indels: 12
0.96 0.01 0.03
Matches are distributed among these distances:
410 355 0.87
417 1 0.00
419 1 0.00
421 1 0.00
422 48 0.12
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (414 bp):
TGCAGAACCATCAAGTGCCTGATCTTCGGAATCTTCAAGATGTGAGCGACTTATACAGTATTGTT
ATGAGCTATACGTATTTATAGTACTGTCCTTTTGAATGGTATACTCTTTGTGATTCGTTTAGTTC
TCCTCACTCCTTTGATCTATTATATGAAGAGCGGGTTATGGATCAGAAAGCGAAGCTGATGAGGA
AGCTGCAACAGTTACTCTGACTAGTGATCTTAGTCGAGTTAATCGTGCCTCTACAAAAAGCGCGG
TTAAGCTTCAAGAAATTGGACCTAGAATGACTCTCCAACTCACCAAAATTGAGGGTGGACTATGT
TCTGGTGAAGTTATGTTCAGTGAATATGGTATGTTCATCTATCCATGTGAAAACAAGAGAAGAAT
AAGAATTTATCTCAAAAAAGAAAA
Found at i:37487734 original size:18 final size:17
Alignment explanation
Indices: 37487711--37487763 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
37487701 ATATATTATG
*
37487711 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
37487729 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
37487746 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
37487764 TTAATAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:37488040 original size:24 final size:24
Alignment explanation
Indices: 37488007--37488103 Score: 124
Period size: 24 Copynumber: 4.1 Consensus size: 24
37487997 ATTACGCCTC
*
37488007 TATTCCATTACACTTCTATTCTAT
1 TATTCCATTACACTTCTATTCCAT
* *
37488031 TATTCTATTACACTTTTATTCCA-
1 TATTCCATTACACTTCTATTCCAT
*
37488054 TATTCCATTACACTTCTATTCTAT
1 TATTCCATTACACTTCTATTCCAT
* * *
37488078 TACTCTATTACACTTTTATTCCAT
1 TATTCCATTACACTTCTATTCCAT
37488102 TA
1 TA
37488104 CTGTGTAAGT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
23 20 0.32
24 42 0.68
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.51
Consensus pattern (24 bp):
TATTCCATTACACTTCTATTCCAT
Found at i:37488076 original size:47 final size:47
Alignment explanation
Indices: 37488007--37488101 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
37487997 ATTACGCCTC
*
37488007 TATTCCATTACACTTCTATTCTATTATTCTATTACACTTTTATTCCA
1 TATTCCATTACACTTCTATTCTATTACTCTATTACACTTTTATTCCA
37488054 TATTCCATTACACTTCTATTCTATTACTCTATTACACTTTTATTCCA
1 TATTCCATTACACTTCTATTCTATTACTCTATTACACTTTTATTCCA
37488101 T
1 T
37488102 TACTGTGTAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.25, C:0.24, G:0.00, T:0.51
Consensus pattern (47 bp):
TATTCCATTACACTTCTATTCTATTACTCTATTACACTTTTATTCCA
Found at i:37494529 original size:12 final size:12
Alignment explanation
Indices: 37494512--37494536 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37494502 TTAAATGATA
37494512 TGGGTGTGTGTT
1 TGGGTGTGTGTT
37494524 TGGGTGTGTGTT
1 TGGGTGTGTGTT
37494536 T
1 T
37494537 AAGGTATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (12 bp):
TGGGTGTGTGTT
Found at i:37494632 original size:26 final size:26
Alignment explanation
Indices: 37494603--37494656 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
37494593 TTATCCCTGT
37494603 TGGGTGGGCTCATGTTATATTTTTGG
1 TGGGTGGGCTCATGTTATATTTTTGG
37494629 TGGGTGGGCTCATGTTATATTTTTGG
1 TGGGTGGGCTCATGTTATATTTTTGG
37494655 TG
1 TG
37494657 AACTTATATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.11, C:0.07, G:0.35, T:0.46
Consensus pattern (26 bp):
TGGGTGGGCTCATGTTATATTTTTGG
Found at i:37499560 original size:32 final size:32
Alignment explanation
Indices: 37499498--37499575 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 32
37499488 TGTGAGTGTG
* * * *
37499498 TAGCCGTGTGAGTCACGCGGGCTAAGCCAATT
1 TAGCCGTGTGGGCCACACGGGCTAAACCAATT
37499530 TAGCCGTGTGGGCCACACGGG-TGAAACCAATT
1 TAGCCGTGTGGGCCACACGGGCT-AAACCAATT
37499562 TAAG-CGTGTGGGCC
1 T-AGCCGTGTGGGCC
37499576 TCACAGGCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
31 1 0.03
32 37 0.93
33 2 0.05
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (32 bp):
TAGCCGTGTGGGCCACACGGGCTAAACCAATT
Done.