Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 121 of 126
Found at i:37515183 original size:25 final size:25
Alignment explanation
Indices: 37515153--37515200 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37515143 TATTTTATAT
* * *
37515153 TTTATACTTTTTAATTTTTAAAATA
1 TTTATAATTTTTAAATTTAAAAATA
37515178 TTTATAATTTTTAAATTTAAAAA
1 TTTATAATTTTTAAATTTAAAAA
37515201 AAATTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTATAATTTTTAAATTTAAAAATA
Found at i:37522043 original size:20 final size:20
Alignment explanation
Indices: 37521994--37522049 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
37521984 AGATTGTGCT
* * *
37521994 AAGTAAATGAAATGGAAAGT
1 AAGTAAATGGAATGGTAAGA
37522014 AAGTAAATGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
37522034 AAGTAAATGGAGTGGT
1 AAGTAAATGGAATGGT
37522050 TCATAATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:37528845 original size:28 final size:28
Alignment explanation
Indices: 37528780--37528930 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
37528770 GAGATTGGCG
* * * *
37528780 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
37528809 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37528837 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
37528865 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37528893 CTAAGTGTGCGAG-TTGATTATATAACA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37528920 CTGAGTGTGCG
1 CTAAGTGTGCG
37528931 GACTTAATAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 23 0.20
28 76 0.67
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:37530452 original size:57 final size:57
Alignment explanation
Indices: 37530379--37530493 Score: 164
Period size: 57 Copynumber: 2.0 Consensus size: 57
37530369 CACAGATTGG
37530379 GCAGTGTCTGGAAAATAAATT-TTAT-AAGGGGTTAAAGTCAGTTAACACCTCGTGTTC
1 GCAGTGTCTGGAAAAT--ATTGTTATAAAGGGGTTAAAGTCAGTTAACACCTCGTGTTC
* *
37530436 GCAGTGTCT-GAGAAATATTGTTATAAAGGGTTTAAAGTCTGTTAACACCTCGTGTTC
1 GCAGTGTCTGGA-AAATATTGTTATAAAGGGGTTAAAGTCAGTTAACACCTCGTGTTC
37530493 G
1 G
37530494 ACTCCGGTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
55 3 0.06
56 6 0.11
57 44 0.83
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (57 bp):
GCAGTGTCTGGAAAATATTGTTATAAAGGGGTTAAAGTCAGTTAACACCTCGTGTTC
Found at i:37537906 original size:27 final size:27
Alignment explanation
Indices: 37537875--37538052 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37537865 TAAATTGTAC
37537875 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37537902 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37537928 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37537956 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37537984 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37538011 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37538038 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37538053 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37537989 original size:82 final size:81
Alignment explanation
Indices: 37537876--37538031 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37537866 AAATTGTACA
* *
37537876 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37537940 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37537957 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37538022 TGCGAGTTGA
65 TGCGAATTGA
37538032 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37538043 original size:82 final size:81
Alignment explanation
Indices: 37537872--37538052 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37537862 GATTAAATTG
* *
37537872 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37537937 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37537953 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37538017 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37538035 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37538053 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37550766 original size:25 final size:23
Alignment explanation
Indices: 37550698--37550766 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 23
37550688 AAATTTCTAA
*
37550698 TTAATTTTAATTTTTTTTTAATT
1 TTAATTTTTATTTTTTTTTAATT
* *
37550721 TTCATTTTTATCTTTGCTTTTAATT
1 TTAATTTTTAT-TTT-TTTTTAATT
37550746 TTAATGTTTTATTTATTTTTT
1 TTAAT-TTTTATTT-TTTTTT
37550767 TTATGTTTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
23 9 0.24
24 3 0.08
25 18 0.49
26 7 0.19
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.72
Consensus pattern (23 bp):
TTAATTTTTATTTTTTTTTAATT
Found at i:37552340 original size:77 final size:76
Alignment explanation
Indices: 37552213--37552425 Score: 284
Period size: 75 Copynumber: 2.8 Consensus size: 76
37552203 TATCCGTTAC
* * *
37552213 CGGTGGATTCAGCACTTAGCAACCATCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTTCA
1 CGGTGGAATCAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTTCA
37552278 CATTCAAAAATA
66 CATT-AAAAATA
* * *
37552290 CGGTGGAATCAACACTTAGCAACCACCAATGAATCAGGGAATCAACACTTAGCAACCCC-TTTCA
1 CGGTGGAATCAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTTCA
* *
37552354 CATTTAAGATA
66 CATTAAAAATA
* * * * * *
37552365 CGATGGGATCAGCAGTTAGCAACCACCAATGATTCAGGGAACCAGTACTTAGAAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTT
37552426 AGGGGAATTA
Statistics
Matches: 118, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
75 55 0.47
76 10 0.08
77 53 0.45
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (76 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTTCA
CATTAAAAATA
Found at i:37564435 original size:43 final size:41
Alignment explanation
Indices: 37564316--37564543 Score: 147
Period size: 43 Copynumber: 5.4 Consensus size: 41
37564306 CTCGGTGGAT
* * * **
37564316 TCAGTACTTAGCAACCACC-TTAAATTCAGTGATATGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAAATCA-TAATACAGGGAA
* ** * * * *
37564357 TCAACACAGAGCAACC-CCTTTCACAGTCAAAAATACAGTGGAT
1 TCAGCACTTAGCAACCACCTTT-AAAATC-ATAATACAG-GGAA
* * *
37564400 TCAGCACTTAGCAACCACCTTTATATTTAGTAATACAGGGAA
1 TCAGCACTTAGCAACCACCTTTAAAATCA-TAATACAGGGAA
* * * * *
37564442 TCAGCACATAACAACC-CCTTTCACAATCAAAGATACGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-AAAATCATA-ATACAG-GGAA
* *
37564485 TCAGCACTTAGCAACCACCTTTAAAGTCAATAATTCAGGGAAA
1 TCAGCACTTAGCAACCACCTTTAAAATC-ATAATACAGGG-AA
37564528 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
37564544 CTTTTTTATT
Statistics
Matches: 142, Mismatches: 33, Indels: 22
0.72 0.17 0.11
Matches are distributed among these distances:
40 2 0.01
41 20 0.14
42 37 0.26
43 71 0.50
44 12 0.08
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (41 bp):
TCAGCACTTAGCAACCACCTTTAAAATCATAATACAGGGAA
Found at i:37564472 original size:85 final size:85
Alignment explanation
Indices: 37564310--37564544 Score: 301
Period size: 85 Copynumber: 2.8 Consensus size: 85
37564300 CCGTTACTCG
* * ** * *
37564310 GTGGATTCAGTACTTAGCAACCACC-TTAAATTCAGTGATATGGGGAATCAACACAGAGCAACCC
1 GTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACAGGGAATCAGCACATAGCAACCC
*
37564374 CTTTCACAGTCAAAAATACA
66 CTTTCACAATCAAAAATACA
* * *
37564394 GTGGATTCAGCACTTAGCAACCACCTTTATATTTAGTAATACAGGGAATCAGCACATAACAACCC
1 GTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACAGGGAATCAGCACATAGCAACCC
* *
37564459 CTTTCACAATCAAAGATACG
66 CTTTCACAATCAAAAATACA
* * * * *
37564479 GTGGAATCAGCACTTAGCAACCACCTTTAAAGTCAATAATTCAGGGAAATCAGCACTTAGCAACC
1 GTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACAGGG-AATCAGCACATAGCAACC
37564544 C
65 C
37564545 TTTTTTATTC
Statistics
Matches: 129, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
84 24 0.19
85 88 0.68
86 17 0.13
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.23
Consensus pattern (85 bp):
GTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACAGGGAATCAGCACATAGCAACCC
CTTTCACAATCAAAAATACA
Found at i:37565646 original size:24 final size:24
Alignment explanation
Indices: 37565613--37565693 Score: 117
Period size: 24 Copynumber: 3.4 Consensus size: 24
37565603 GCCCAAACGT
*
37565613 CGAAATTTTAGAACGAAATTTTTA
1 CGAAATTTTAGAACGAAATTTTCA
* *
37565637 TGAAACTTTAGAACGAAATTTTCA
1 CGAAATTTTAGAACGAAATTTTCA
* *
37565661 CGAAATTTTAGAATGAAATTTGCA
1 CGAAATTTTAGAACGAAATTTTCA
37565685 CGAAATTTT
1 CGAAATTTT
37565694 CATGGGATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (24 bp):
CGAAATTTTAGAACGAAATTTTCA
Found at i:37565668 original size:35 final size:34
Alignment explanation
Indices: 37565625--37565695 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 34
37565615 AAATTTTAGA
*
37565625 ACGAAATTTT-TATGAAACTTTAGAACGAAATTTTC
1 ACGAAATTTTAAATGAAA-TTT-GAACGAAATTTTC
*
37565660 ACGAAATTTTAGAATGAAATTTGCACGAAATTTTC
1 ACGAAATTTTA-AATGAAATTTGAACGAAATTTTC
37565695 A
1 A
37565696 TGGGATTTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 23 0.72
36 3 0.09
37 6 0.19
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (34 bp):
ACGAAATTTTAAATGAAATTTGAACGAAATTTTC
Found at i:37570616 original size:20 final size:20
Alignment explanation
Indices: 37570591--37570642 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
37570581 AAGCTTATGC
37570591 TAAGTAAATGGAATACAAAG
1 TAAGTAAATGGAATACAAAG
* **
37570611 TAAGTAAATGGGATGGAAAG
1 TAAGTAAATGGAATACAAAG
37570631 TAAGTAAATGGA
1 TAAGTAAATGGA
37570643 TTTGCTCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.50, C:0.02, G:0.27, T:0.21
Consensus pattern (20 bp):
TAAGTAAATGGAATACAAAG
Found at i:37583795 original size:12 final size:11
Alignment explanation
Indices: 37583768--37583805 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
37583758 GAAAATAGTC
37583768 AAAATTAATA-
1 AAAATTAATAT
37583778 AAAATTAACTAT
1 AAAATTAA-TAT
37583790 AAAATTAAT-T
1 AAAATTAATAT
37583800 AAAATT
1 AAAATT
37583806 CATCATGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:37590868 original size:15 final size:15
Alignment explanation
Indices: 37590844--37590873 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37590834 TTCTCGGTTC
*
37590844 ACTAATCCAATTTTT
1 ACTAACCCAATTTTT
37590859 ACTAACCCAATTTTT
1 ACTAACCCAATTTTT
37590874 GGGATGTAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
ACTAACCCAATTTTT
Found at i:37593714 original size:47 final size:47
Alignment explanation
Indices: 37593649--37593754 Score: 151
Period size: 47 Copynumber: 2.3 Consensus size: 47
37593639 GTCACAAAAA
* * *
37593649 TGCAGATAATCTGTCACTTAAGA-ATATTGTGGACAAGCCACCATTTT
1 TGCAGATAAACTGGCACTTAAGACA-ATTGTGGACAAGCCACCACTTT
* *
37593696 TGTAGATAAACTGGCACTTAATACAATTGTGGACAAGCCACCACTTT
1 TGCAGATAAACTGGCACTTAAGACAATTGTGGACAAGCCACCACTTT
37593743 TGCAGATAAACT
1 TGCAGATAAACT
37593755 ACCACTTATT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 51 0.98
48 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (47 bp):
TGCAGATAAACTGGCACTTAAGACAATTGTGGACAAGCCACCACTTT
Found at i:37593832 original size:20 final size:20
Alignment explanation
Indices: 37593807--37593846 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
37593797 ATGTGGCCAA
37593807 AAAAAT-AACATTTTCACTTT
1 AAAAATCAA-ATTTTCACTTT
37593827 AAAAATCAAATTTTCACTTT
1 AAAAATCAAATTTTCACTTT
37593847 GTCATGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATCAAATTTTCACTTT
Found at i:37595624 original size:27 final size:26
Alignment explanation
Indices: 37595581--37595851 Score: 292
Period size: 27 Copynumber: 10.1 Consensus size: 26
37595571 CAATATCTTC
*
37595581 ACCGAAATACCCTCATAGAGTAAAATG
1 ACCGAAATACCC-CATAGGGTAAAATG
* * *
37595608 ACCGAAATACCTCCATAGGTTATAATT
1 ACCGAAATACC-CCATAGGGTAAAATG
37595635 ACCGAAATACCCTCATAGGGTAAAATG
1 ACCGAAATACCC-CATAGGGTAAAATG
**
37595662 ATTGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATA-CCCCATAGGGTAAAATG
**
37595689 ACTAAAATACCCTCATAGGGTAAAATG
1 ACCGAAATACCC-CATAGGGTAAAATG
** *
37595716 ACTAAAAT-CCCTTATAGGGTAAAATG
1 ACCGAAATACCC-CATAGGGTAAAATG
*
37595742 ACTGAAATACCCCTATAGGGTAAAATG
1 ACCGAAATACCCC-ATAGGGTAAAATG
*
37595769 ACTGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATA-CCCCATAGGGTAAAATG
* *
37595796 ATCGAAATACCCCCATAGGGTAAAATA
1 ACCGAAATA-CCCCATAGGGTAAAATG
* *
37595823 ATCGAAATACCCCTATAAGGTAAAATG
1 ACCGAAATACCCC-ATAGGGTAAAATG
37595850 AC
1 AC
37595852 TGTAATTGAT
Statistics
Matches: 216, Mismatches: 20, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
26 32 0.15
27 176 0.81
28 8 0.04
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (26 bp):
ACCGAAATACCCCATAGGGTAAAATG
Found at i:37595669 original size:54 final size:54
Alignment explanation
Indices: 37595581--37595851 Score: 341
Period size: 54 Copynumber: 5.0 Consensus size: 54
37595571 CAATATCTTC
* * * * * *
37595581 ACCGAAATACCCTCATAGAGTAAAATGACCGAAATACCTCCATAGGTTATAATT
1 ACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATG
*
37595635 ACCGAAATACCCTCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATG
** * **
37595689 ACTAAAATACCCTCATAGGGTAAAATGACTAAAAT-CCCTTATAGGGTAAAATG
1 ACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATG
*
37595742 ACTGAAATACCC-CTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATACCCTC-ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATG
* * * * *
37595796 ATCGAAATACCCCCATAGGGTAAAAT-AATCGAAATACCCCTATAAGGTAAAATG
1 ACCGAAATACCCTCATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATG
37595850 AC
1 AC
37595852 TGTAATTGAT
Statistics
Matches: 190, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
52 1 0.01
53 49 0.26
54 139 0.73
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (54 bp):
ACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATG
Found at i:37595845 original size:134 final size:135
Alignment explanation
Indices: 37595585--37595852 Score: 373
Period size: 134 Copynumber: 2.0 Consensus size: 135
37595575 ATCTTCACCG
* * * *
37595585 AAATACCCTCATAGAGTAAAATGACCGAAATACCTCCATAGGTTATAATTACCGAAATACCCTCA
1 AAATACCCTCATAGAGTAAAATGACCGAAATACCTCCATAGGGTAAAATGACCGAAATACCCCCA
* * *
37595650 TAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAAT
66 TAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATAACTAAAATACCCTCATAAGGTAAAAT
37595715 GACTA
131 GACTA
* * * *
37595720 AAAT-CCCTTATAGGGTAAAATGACTGAAATACC-CCTATAGGGTAAAATGACTGAAATACCCCC
1 AAATACCCTCATAGAGTAAAATGACCGAAATACCTCC-ATAGGGTAAAATGACCGAAATACCCCC
*
37595783 ATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATAA-TCGAAATACCC-CTATAAGGTAA
65 ATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATAACT-AAAATACCCTC-ATAAGGTAA
37595846 AATGACT
128 AATGACT
37595853 GTAATTGATA
Statistics
Matches: 118, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
133 4 0.03
134 110 0.93
135 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (135 bp):
AAATACCCTCATAGAGTAAAATGACCGAAATACCTCCATAGGGTAAAATGACCGAAATACCCCCA
TAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATAACTAAAATACCCTCATAAGGTAAAAT
GACTA
Found at i:37596467 original size:42 final size:42
Alignment explanation
Indices: 37596366--37596448 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
37596356 AATATGTGTG
*
37596366 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
1 AAACATTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
37596408 AAACATTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
1 AAACATTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
37596449 CTTTGAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (42 bp):
AAACATTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
Found at i:37597511 original size:26 final size:26
Alignment explanation
Indices: 37597449--37597512 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
37597439 TACTGGTAGA
37597449 TTTGCTACGATACTAATACTAGAAGC
1 TTTGCTACGATACTAATACTAGAAGC
* * * * *
37597475 TCTACTACGATGCTATTACTAGCAGC
1 TTTGCTACGATACTAATACTAGAAGC
*
37597501 TTTGCTGCGATA
1 TTTGCTACGATA
37597513 TTGGTGTGTT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (26 bp):
TTTGCTACGATACTAATACTAGAAGC
Found at i:37597632 original size:28 final size:29
Alignment explanation
Indices: 37597592--37597792 Score: 247
Period size: 28 Copynumber: 7.2 Consensus size: 29
37597582 TTATTACACT
* *
37597592 ACACTG-TTACTGTATTTGACTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
37597620 ACACTGATT-CTGTATTGGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
37597648 ACACT-ATTACTGTATTGGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
* * *
37597676 ACACT-ATTACTCTATTAGGCTAAGGCAC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
* * **
37597704 ACACTAATT-CTGTATTGGACTAAGGCTT
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
37597732 ACACT-ATTACTGTATTGGGCTATGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
37597760 ACACTG-TTACTATATTGGG-TAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
37597787 ACACTG
1 ACACTG
37597793 TACTGTCACT
Statistics
Matches: 152, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
27 19 0.12
28 128 0.84
29 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (29 bp):
ACACTGATTACTGTATTGGGCTAAGGCCC
Found at i:37597707 original size:84 final size:83
Alignment explanation
Indices: 37597592--37597792 Score: 285
Period size: 84 Copynumber: 2.4 Consensus size: 83
37597582 TTATTACACT
* * *
37597592 ACACTGTTACTGTATTTGACTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCACACTATTA
1 ACACTGTTACTATA-TTGGCTAAGGCCCACACTGATTCTGTATTGGACTAAGGCCCACACTATTA
37597657 CTGTATTGGGCTAAGGCCC
65 CTGTATTGGGCTAAGGCCC
* * * * **
37597676 ACACTATTACTCTATTAGGCTAAGGCACACACTAATTCTGTATTGGACTAAGGCTTACACTATTA
1 ACACTGTTACTATATT-GGCTAAGGCCCACACTGATTCTGTATTGGACTAAGGCCCACACTATTA
*
37597741 CTGTATTGGGCTATGGCCC
65 CTGTATTGGGCTAAGGCCC
*
37597760 ACACTGTTACTATATTGGGTAAGGCCCACACTG
1 ACACTGTTACTATATTGGCTAAGGCCCACACTG
37597793 TACTGTCACT
Statistics
Matches: 102, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
83 16 0.16
84 86 0.84
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (83 bp):
ACACTGTTACTATATTGGCTAAGGCCCACACTGATTCTGTATTGGACTAAGGCCCACACTATTAC
TGTATTGGGCTAAGGCCC
Found at i:37615095 original size:17 final size:17
Alignment explanation
Indices: 37615073--37615105 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37615063 ATTCTTTGAG
37615073 AATTGCCAC-AGCATTTC
1 AATTGCC-CTAGCATTTC
37615090 AATTGCCCTAGCATTT
1 AATTGCCCTAGCATTT
37615106 TTTCATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (17 bp):
AATTGCCCTAGCATTTC
Found at i:37626304 original size:166 final size:166
Alignment explanation
Indices: 37626030--37626361 Score: 646
Period size: 166 Copynumber: 2.0 Consensus size: 166
37626020 TTAATTCGGT
37626030 GCTCATAATGACAACTACCAACTTTTCAACGATGCATGATGGCAATATTTACTAATATGGTTGAA
1 GCTCATAATGACAACTACCAACTTTTCAACGATGCATGATGGCAATATTTACTAATATGGTTGAA
*
37626095 AATTTTGTTGACGTTTTCATGGATGATTTTCTGTTATTGGTAACATTTATGATATCTGTTTGAGT
66 AATTTTGTTGACGTTTGCATGGATGATTTTCTGTTATTGGTAACATTTATGATATCTGTTTGAGT
37626160 AATTTGGCTAAGGTATTGAAGAGATGCGAAGAGACG
131 AATTTGGCTAAGGTATTGAAGAGATGCGAAGAGACG
37626196 GCTCATAATGACAACTACCAACTTTTCAACGATGCATGATGGCAATATTTACTAATATGGTTGAA
1 GCTCATAATGACAACTACCAACTTTTCAACGATGCATGATGGCAATATTTACTAATATGGTTGAA
*
37626261 AATTTTGTTGACGTTTGCATGGATGGTTTTCTGTTATTGGTAACATTTATGATATCTGTTTGAGT
66 AATTTTGTTGACGTTTGCATGGATGATTTTCTGTTATTGGTAACATTTATGATATCTGTTTGAGT
37626326 AATTTGGCTAAGGTATTGAAGAGATGCGAAGAGACG
131 AATTTGGCTAAGGTATTGAAGAGATGCGAAGAGACG
37626362 AATCTTGTCC
Statistics
Matches: 164, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
166 164 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (166 bp):
GCTCATAATGACAACTACCAACTTTTCAACGATGCATGATGGCAATATTTACTAATATGGTTGAA
AATTTTGTTGACGTTTGCATGGATGATTTTCTGTTATTGGTAACATTTATGATATCTGTTTGAGT
AATTTGGCTAAGGTATTGAAGAGATGCGAAGAGACG
Found at i:37632905 original size:28 final size:27
Alignment explanation
Indices: 37632841--37632993 Score: 216
Period size: 28 Copynumber: 5.6 Consensus size: 27
37632831 TTATTAAGTC
* *
37632841 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
37632868 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
37632896 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
37632924 CGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATA-ATCAACT
* *
37632952 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
37632979 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37632994 GCACAATTTA
Statistics
Matches: 116, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
27 42 0.36
28 72 0.62
29 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37632934 original size:56 final size:55
Alignment explanation
Indices: 37632841--37633018 Score: 230
Period size: 56 Copynumber: 3.2 Consensus size: 55
37632831 TTATTAAGTC
* * *
37632841 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * *
37632896 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
37632952 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
37633008 CGCACACTTAG
1 CGCACACTTAG
37633019 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
55 41 0.38
56 68 0.62
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:37635901 original size:12 final size:12
Alignment explanation
Indices: 37635884--37635931 Score: 87
Period size: 12 Copynumber: 4.0 Consensus size: 12
37635874 AGACCGTATG
37635884 CAATTTTTTTTT
1 CAATTTTTTTTT
37635896 CAATTTTTTTTT
1 CAATTTTTTTTT
37635908 CAATTTTTTTTT
1 CAATTTTTTTTT
*
37635920 CGATTTTTTTTT
1 CAATTTTTTTTT
37635932 GAATCTACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:37642028 original size:20 final size:20
Alignment explanation
Indices: 37642005--37642069 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
37641995 AAGCTCAAAC
37642005 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGTAAGCTAAATT
37642025 GAGCTCAAACG-AA-CTAAATT
1 GAGCT-AAA-GTAAGCTAAATT
* * * * *
37642045 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGTAAGCTAAATT
37642065 GAGCT
1 GAGCT
37642070 GGGAAAAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 2 0.06
20 26 0.74
21 5 0.14
22 1 0.03
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (20 bp):
GAGCTAAAGTAAGCTAAATT
Found at i:37644687 original size:12 final size:13
Alignment explanation
Indices: 37644663--37644688 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37644653 AAAAGAGAAG
37644663 AAATTCAAAAAAA
1 AAATTCAAAAAAA
37644676 AAATTCAAAAAAA
1 AAATTCAAAAAAA
37644689 TCGAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
AAATTCAAAAAAA
Found at i:37645803 original size:6 final size:6
Alignment explanation
Indices: 37645770--37645877 Score: 58
Period size: 6 Copynumber: 17.7 Consensus size: 6
37645760 AAAGAAATTG
* * * ** *
37645770 AAAG-A AAACAA AAAGAA AACGAA GAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
* ** * * *
37645817 AAA-AA AATCGAA AAAGTG AGAGAA AAAGAA AATGAAAA AAAGAA AATTGAA
1 AAAGAA AA-AGAA AAAGAA AAAGAA AAAGAA AA--AGAA AAAGAA AA-AGAA
37645868 AAAGAA AAAG
1 AAAGAA AAAG
37645878 CGAAAAAAGA
Statistics
Matches: 73, Mismatches: 24, Indels: 11
0.68 0.22 0.10
Matches are distributed among these distances:
5 7 0.10
6 52 0.71
7 9 0.12
8 5 0.07
ACGTcount: A:0.72, C:0.04, G:0.18, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:37645853 original size:12 final size:12
Alignment explanation
Indices: 37645756--37645875 Score: 63
Period size: 12 Copynumber: 10.0 Consensus size: 12
37645746 AGAAAGAGAT
*
37645756 TGAAAAAGAAAT
1 TGAAAAAGAAAA
37645768 TG--AAAGAAAA
1 TGAAAAAGAAAA
*
37645778 -CAAAAAGAAAA
1 TGAAAAAGAAAA
* *
37645789 CGAAGAAGAAAA
1 TGAAAAAGAAAA
* **
37645801 AGAAATTGCAAAA
1 TGAAAAAG-AAAA
37645814 -GAAAAA-AAAA
1 TGAAAAAGAAAA
* *
37645824 TCGAAAAAGTGAGA
1 T-GAAAAAG-AAAA
37645838 -GAAAAAGAAAA
1 TGAAAAAGAAAA
37645849 TGAAAAAAAGAAAA
1 TG--AAAAAGAAAA
37645863 TTGAAAAAGAAAA
1 -TGAAAAAGAAAA
37645876 AGCGAAAAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
10 11 0.13
11 10 0.12
12 33 0.40
13 14 0.17
14 12 0.15
15 2 0.02
ACGTcount: A:0.71, C:0.03, G:0.17, T:0.08
Consensus pattern (12 bp):
TGAAAAAGAAAA
Found at i:37645858 original size:14 final size:15
Alignment explanation
Indices: 37645839--37645895 Score: 59
Period size: 14 Copynumber: 4.1 Consensus size: 15
37645829 AAAGTGAGAG
37645839 AAAAAGAAAA-TGAA
1 AAAAAGAAAATTGAA
37645853 AAAAAGAAAATTGAA
1 AAAAAGAAAATTGAA
* **
37645868 AAAGA-AAAAGCG-A
1 AAAAAGAAAATTGAA
37645881 AAAAAG-AAATTGAA
1 AAAAAGAAAATTGAA
37645895 A
1 A
37645896 GAGAGCTTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
13 9 0.26
14 17 0.50
15 8 0.24
ACGTcount: A:0.74, C:0.02, G:0.16, T:0.09
Consensus pattern (15 bp):
AAAAAGAAAATTGAA
Found at i:37645868 original size:27 final size:27
Alignment explanation
Indices: 37645838--37645895 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
37645828 AAAAGTGAGA
*
37645838 GAAAAAGAAAATG-AAAAAAAGAAAATT
1 GAAAAAGAAAAAGCAAAAAAAG-AAATT
*
37645865 GAAAAAGAAAAAGCGAAAAAAGAAATT
1 GAAAAAGAAAAAGCAAAAAAAGAAATT
37645892 GAAA
1 GAAA
37645896 GAGAGCTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.72, C:0.02, G:0.17, T:0.09
Consensus pattern (27 bp):
GAAAAAGAAAAAGCAAAAAAAGAAATT
Found at i:37645889 original size:21 final size:21
Alignment explanation
Indices: 37645839--37645889 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
37645829 AAAGTGAGAG
*
37645839 AAAAAGAAAATGAAAAAAAGA
1 AAAAAGAAAAAGAAAAAAAGA
** **
37645860 AAATTGAAAAAGAAAAAGCGA
1 AAAAAGAAAAAGAAAAAAAGA
37645881 AAAAAGAAA
1 AAAAAGAAA
37645890 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAAAAAAGA
Found at i:37646037 original size:48 final size:47
Alignment explanation
Indices: 37645958--37646063 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
37645948 GAGTGTCATG
*
37645958 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
37646006 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
37646054 GAAAAAGAAA
1 GAAAAAGAAA
37646064 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:37650412 original size:25 final size:24
Alignment explanation
Indices: 37650373--37650443 Score: 88
Period size: 25 Copynumber: 2.9 Consensus size: 24
37650363 TGAGCTACAA
37650373 CTCGTATGAGCTTACCAATTTGCAG
1 CTCGTATGAGCTTACCAATTT-CAG
* * *
37650398 CTCGTAAGAGTTTACCGATTCTCAG
1 CTCGTATGAGCTTACCAATT-TCAG
*
37650423 CTTGTATGAGCTTACCAATTT
1 CTCGTATGAGCTTACCAATTT
37650444 ATAGCTTGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (24 bp):
CTCGTATGAGCTTACCAATTTCAG
Found at i:37650449 original size:25 final size:24
Alignment explanation
Indices: 37650376--37650452 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 24
37650366 GCTACAACTC
*
37650376 GTATGAGCTTACCAATTTGCAGCTC
1 GTATGAGCTTACCAATTT-CAGCTT
* * *
37650401 GTAAGAGTTTACCGATTCTCAGCTT
1 GTATGAGCTTACCAATT-TCAGCTT
*
37650426 GTATGAGCTTACCAATTTATAGCTT
1 GTATGAGCTTACCAATTT-CAGCTT
37650451 GT
1 GT
37650453 GAAAGCATAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.02
25 40 0.95
26 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (24 bp):
GTATGAGCTTACCAATTTCAGCTT
Found at i:37650467 original size:50 final size:50
Alignment explanation
Indices: 37650373--37650483 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
37650363 TGAGCTACAA
* **
37650373 CTCGTATGAGCTTACCAATTTGCAGCTCGTAAGAGTTTACCGATTC-TCAG
1 CTCGTATGAGCTTACCAATTTACAGCTCGTAAGAGCATACCGATTCAT-AG
* * * *
37650423 CTTGTATGAGCTTACCAATTTATAGCTTGTGAA-AGCATATCGATTCATAG
1 CTCGTATGAGCTTACCAATTTACAGCTCGT-AAGAGCATACCGATTCATAG
37650473 CTCGTATGAGC
1 CTCGTATGAGC
37650484 ATACATGTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 48 0.94
51 3 0.06
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (50 bp):
CTCGTATGAGCTTACCAATTTACAGCTCGTAAGAGCATACCGATTCATAG
Found at i:37657372 original size:15 final size:15
Alignment explanation
Indices: 37657352--37657380 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37657342 ATGCTACATA
37657352 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
37657367 CACCGTGTTATCAA
1 CACCGTGTTATCAA
37657381 GCAATAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:37661278 original size:25 final size:25
Alignment explanation
Indices: 37661250--37661299 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
37661240 GTTTCATATA
37661250 CATGTATCATCCAATTCAATTTTCC
1 CATGTATCATCCAATTCAATTTTCC
37661275 CATGTATCATCCAATTCAATTTTCC
1 CATGTATCATCCAATTCAATTTTCC
37661300 TATACCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40
Consensus pattern (25 bp):
CATGTATCATCCAATTCAATTTTCC
Found at i:37661308 original size:30 final size:30
Alignment explanation
Indices: 37661241--37661310 Score: 89
Period size: 25 Copynumber: 2.5 Consensus size: 30
37661231 ATAAATTATG
*
37661241 TTTCATATA-CATGTATCATCCAATTCAAT
1 TTTCCTATACCATGTATCATCCAATTCAAT
37661270 TTT-C----CCATGTATCATCCAATTCAAT
1 TTTCCTATACCATGTATCATCCAATTCAAT
37661295 TTTCCTATACCATGTA
1 TTTCCTATACCATGTA
37661311 ATAACATATC
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
25 23 0.68
26 1 0.03
29 3 0.09
30 7 0.21
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.41
Consensus pattern (30 bp):
TTTCCTATACCATGTATCATCCAATTCAAT
Found at i:37672262 original size:389 final size:389
Alignment explanation
Indices: 37671530--37672312 Score: 1278
Period size: 389 Copynumber: 2.0 Consensus size: 389
37671520 CGGCTTGTTC
*
37671530 TAGTGGTACTTCAATACTTCATGAAGAAATCTTTCTTTTTTATGGCCTGTGACACCCAATGGGAG
1 TAGTGGTACTTCAATACTTCATGAAGAAATCTTTCTTTTTTATGGCCTGTGACAACCAATGGGAG
*
37671595 TTTTCCATACACTAGATAACTAACCAAATCCGCATACTAAGAGGTTCCACCTACAGCAAATAACT
66 TTTTCCATACACTAGATAACTAACCAAATCCGCATACCAAGAGGTTCCACCTACAGCAAATAACT
* * * *
37671660 TCTCATCTGGGAATGCATCGACAATTTGAAGTATGTTTCCATTTTCGCTGCCAACTTTCAATCGA
131 TCTCATCTGGGAATGCATAGACAATTTGAAGTATGTTTCCATCTTCACTGCCAACTTCCAATCGA
*
37671725 GATAGATGGTCTGCAACCTGATTTTCTGAACCCTTGAGATCTTTTATCTCGATGTCGAATTCTTG
196 GATAGATGGTCTGCAACCTGATTTTCTGAACCCTTGAGATCTTTTATCTCAATGTCGAATTCTTG
* * * *
37671790 GTTTTGCATCCTTCTTTGTAAAAAGATATCTCAACGACGAGTGATTAGTAAATACGGTAACCTTT
261 GTTTTGCATCCTTCTTCGTAAAAAGATATCTCAACGACAAGTGATCAGTAAATACGGTAAACTTT
* * * *
37671855 GGGCCGAAAAGGTAAGAACAAAACTTGTTGAAAGCAAAGACTACAGCCAACAATTCTTTCTCTG
326 GGGCCGAAAAGATAAGAACAAAACTTGTGGAAAGCAAAGACTACAACCAAAAATTCTTTCTCTG
* *
37671919 TAGTGGTACTTCACTACTTCATGAAGAAATCTTTCTTTTTTATGGCCTGTTACAACCAATGGGAG
1 TAGTGGTACTTCAATACTTCATGAAGAAATCTTTCTTTTTTATGGCCTGTGACAACCAATGGGAG
* * * * * *
37671984 TTTTCCATACACTAGATAATTAACCAAATCTGCATACCAAGGGGTTGCATCTATAGCAAATAACT
66 TTTTCCATACACTAGATAACTAACCAAATCCGCATACCAAGAGGTTCCACCTACAGCAAATAACT
* *
37672049 TCTCATCTGGGAATGCGTAGACAATTTGAAGTATGTTTCCATCTTCACTGCCAACTTCCAATTGA
131 TCTCATCTGGGAATGCATAGACAATTTGAAGTATGTTTCCATCTTCACTGCCAACTTCCAATCGA
*
37672114 GATAGATGGTCTGCAACCTGATTTTTTGAACCCTTGAGATCTTTTATCTCAATGTCGAATTCTTG
196 GATAGATGGTCTGCAACCTGATTTTCTGAACCCTTGAGATCTTTTATCTCAATGTCGAATTCTTG
* *
37672179 GTTTTGCATCCTTCTTCGTAAAAAGATATCTCAACGCCAATTGATCAGTAAATACGGTAAACTTT
261 GTTTTGCATCCTTCTTCGTAAAAAGATATCTCAACGACAAGTGATCAGTAAATACGGTAAACTTT
* * * *
37672244 GTGTCGACAAGATAAGAACGAAACTTGTGGAAAGCAAAGACTACAACCAAAAATTCTTTCTCTG
326 GGGCCGAAAAGATAAGAACAAAACTTGTGGAAAGCAAAGACTACAACCAAAAATTCTTTCTCTG
37672308 TAGTG
1 TAGTG
37672313 CTATAATTAA
Statistics
Matches: 362, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
389 362 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (389 bp):
TAGTGGTACTTCAATACTTCATGAAGAAATCTTTCTTTTTTATGGCCTGTGACAACCAATGGGAG
TTTTCCATACACTAGATAACTAACCAAATCCGCATACCAAGAGGTTCCACCTACAGCAAATAACT
TCTCATCTGGGAATGCATAGACAATTTGAAGTATGTTTCCATCTTCACTGCCAACTTCCAATCGA
GATAGATGGTCTGCAACCTGATTTTCTGAACCCTTGAGATCTTTTATCTCAATGTCGAATTCTTG
GTTTTGCATCCTTCTTCGTAAAAAGATATCTCAACGACAAGTGATCAGTAAATACGGTAAACTTT
GGGCCGAAAAGATAAGAACAAAACTTGTGGAAAGCAAAGACTACAACCAAAAATTCTTTCTCTG
Found at i:37682907 original size:16 final size:16
Alignment explanation
Indices: 37682882--37682926 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
37682872 AGAAACAAAA
37682882 ATAA-AATAAAATTAC
1 ATAATAATAAAATTAC
*
37682897 ATAATAAT-AAATTTC
1 ATAATAATAAAATTAC
37682912 ATAATAATTAAAATT
1 ATAATAA-TAAAATT
37682927 TTTCGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 17 0.65
16 4 0.15
17 5 0.19
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (16 bp):
ATAATAATAAAATTAC
Found at i:37693871 original size:12 final size:12
Alignment explanation
Indices: 37693854--37693878 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37693844 GCTATTACAC
37693854 GACCTAGCACAT
1 GACCTAGCACAT
37693866 GACCTAGCACAT
1 GACCTAGCACAT
37693878 G
1 G
37693879 GGCGTGTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.32, G:0.20, T:0.16
Consensus pattern (12 bp):
GACCTAGCACAT
Found at i:37694363 original size:28 final size:28
Alignment explanation
Indices: 37694323--37694379 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
37694313 GATACTATGA
37694323 TATCTCCTAGTCGTTTTAAAACATGTTT
1 TATCTCCTAGTCGTTTTAAAACATGTTT
37694351 TATCTCCTAGTCGTTTTAAAACATGTTT
1 TATCTCCTAGTCGTTTTAAAACATGTTT
37694379 T
1 T
37694380 CTTATAGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.47
Consensus pattern (28 bp):
TATCTCCTAGTCGTTTTAAAACATGTTT
Found at i:37700348 original size:50 final size:50
Alignment explanation
Indices: 37700264--37700375 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
37700254 ACACACCACA
* ** * *
37700264 GCTCGTATGAGCTTACCGATTTGTAGCTCATGAGAGCTTATCGATTCTCG
1 GCTCGTATGAGCTTACCAATTTACAGCTCATGAGAGCATACCGATTCTCG
* ** *
37700314 GCTCGTCTGAGCTTACCAATTTACAGCTTGTGAGAGCATACCGATTCAT-A
1 GCTCGTATGAGCTTACCAATTTACAGCTCATGAGAGCATACCGATTC-TCG
37700364 GCTCGTATGAGC
1 GCTCGTATGAGC
37700376 ATACATGTAC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 50 0.98
51 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (50 bp):
GCTCGTATGAGCTTACCAATTTACAGCTCATGAGAGCATACCGATTCTCG
Found at i:37701755 original size:20 final size:20
Alignment explanation
Indices: 37701730--37701768 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
37701720 TACTTTCTTC
37701730 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
37701750 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
37701769 AAATAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:37702130 original size:51 final size:54
Alignment explanation
Indices: 37702075--37702207 Score: 148
Period size: 51 Copynumber: 2.5 Consensus size: 54
37702065 GTCGGTGCCC
* * *
37702075 ATGCCATGTCCCAAACATGGTCTTACGAGGGGACCTC-TCATCTCGAT-AT-C-A
1 ATGCCATGTCCCAAACATGGTCTTACG-GGGGACCTCTTAACCTCAATAATGCTA
* * * *
37702126 ATGCCATCTCCTAGACATGGTCTTACGTGGGACCTCTTGTAACCTCAATAATGCTA
1 ATGCCATGTCCCAAACATGGTCTTACGGGGGACCTC-T-TAACCTCAATAATGCTA
37702182 ATGCCATGTCCCAAACATGGTCTTAC
1 ATGCCATGTCCCAAACATGGTCTTAC
37702208 ATGGGGTCTC
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
50 8 0.12
51 24 0.36
53 7 0.11
54 2 0.03
55 1 0.02
56 24 0.36
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (54 bp):
ATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTTAACCTCAATAATGCTA
Found at i:37702200 original size:56 final size:50
Alignment explanation
Indices: 37702075--37702212 Score: 141
Period size: 56 Copynumber: 2.6 Consensus size: 50
37702065 GTCGGTGCCC
* * * *
37702075 ATGCCATGTCCCAAACATGGTCTTACGAGGGGACCTCTCATCTCGATATCA
1 ATGCCATGTCCCAAACATGGTCTTACG-TGGGACCTCTAACCTCAATATCA
* * *
37702126 ATGCCATCTCCTAGACATGGTCTTACGTGGGACCTCTTGTAACCTCAATAATGCTA
1 ATGCCATGTCCCAAACATGGTCTTACGTGGGACCTC---TAACCTCAAT-AT-C-A
*
37702182 ATGCCATGTCCCAAACATGGTCTTACATGGG
1 ATGCCATGTCCCAAACATGGTCTTACGTGGG
37702213 GTCTCATCCC
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
50 8 0.11
51 24 0.34
53 7 0.10
54 2 0.03
55 1 0.01
56 28 0.40
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAAACATGGTCTTACGTGGGACCTCTAACCTCAATATCA
Found at i:37702354 original size:21 final size:22
Alignment explanation
Indices: 37702320--37702364 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
37702310 TCAAGATTAA
*
37702320 ATAATTTCATG-AAATAACTAC
1 ATAATTTCATGAAAATAACAAC
37702341 ATAATTTC-TGGAAAATAACAAC
1 ATAATTTCAT-GAAAATAACAAC
37702363 AT
1 AT
37702365 TAATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 9 0.43
22 11 0.52
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (22 bp):
ATAATTTCATGAAAATAACAAC
Found at i:37705129 original size:150 final size:150
Alignment explanation
Indices: 37704935--37705234 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
37704925 CTAATACGCA
37704935 TATAAAAGACTATGTGAGGTCACAAAGTATCCTTACCTTGAAACAGTTTAATCACACTAATCTTG
1 TATAAAAGACTATGTGAGGTCACAAAGTATCCTTACCTTGAAACAGTTTAATCACACTAATCTTG
37705000 CAAGTTATGCAAGGCATATGTATCGCCAAATACAATGCTAGAATAATTAAACATGTACTGATTAA
66 CAAGTTATGCAAGGCATATGTATCGCCAAATACAATGCTAGAATAATTAAACATGTACTGATTAA
37705065 GTACTGTGTCCATTAATTAC
131 GTACTGTGTCCATTAATTAC
37705085 TATAAAAGACTATGTGAGGTCACAAAGTATCCTTACCTTGAAACAGTTTAATCACACTAATCTTG
1 TATAAAAGACTATGTGAGGTCACAAAGTATCCTTACCTTGAAACAGTTTAATCACACTAATCTTG
37705150 CAAGTTATGCAAGGCATATGTATCGCCAAATACAATGCTAGAATAATTAAACATGTACTGATTAA
66 CAAGTTATGCAAGGCATATGTATCGCCAAATACAATGCTAGAATAATTAAACATGTACTGATTAA
*
37705215 GTATTGTGTCCATTAATTAC
131 GTACTGTGTCCATTAATTAC
37705235 AATTTCAATA
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (150 bp):
TATAAAAGACTATGTGAGGTCACAAAGTATCCTTACCTTGAAACAGTTTAATCACACTAATCTTG
CAAGTTATGCAAGGCATATGTATCGCCAAATACAATGCTAGAATAATTAAACATGTACTGATTAA
GTACTGTGTCCATTAATTAC
Found at i:37705717 original size:14 final size:14
Alignment explanation
Indices: 37705698--37705728 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
37705688 AAGTGAGAGA
*
37705698 TGAGAGAAGAGTTG
1 TGAGAGAAGAGATG
37705712 TGAGAGAAGAGATG
1 TGAGAGAAGAGATG
37705726 TGA
1 TGA
37705729 ATGAGGGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.42, T:0.19
Consensus pattern (14 bp):
TGAGAGAAGAGATG
Found at i:37706530 original size:24 final size:25
Alignment explanation
Indices: 37706489--37706535 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
37706479 AAATTTCGGA
*
37706489 AAGAATTTCTCAGAAAC-ACTTTAG
1 AAGAATTCCTCAGAAACAACTTTAG
37706513 AAGAATTCCTTCAG-AACAACTTT
1 AAGAATTCC-TCAGAAACAACTTT
37706536 CTTCTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (25 bp):
AAGAATTCCTCAGAAACAACTTTAG
Found at i:37715832 original size:14 final size:14
Alignment explanation
Indices: 37715813--37715842 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37715803 ATTGAGAGAG
*
37715813 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
37715827 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
37715841 GA
1 GA
37715843 ATGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:37733132 original size:25 final size:24
Alignment explanation
Indices: 37733093--37733163 Score: 88
Period size: 25 Copynumber: 2.9 Consensus size: 24
37733083 TGAGCTACAA
37733093 CTCGTATGAGCTTACCAATTTGCAG
1 CTCGTATGAGCTTACCAATTT-CAG
* * *
37733118 CTCGTAAGAGTTTACCGATTCTCAG
1 CTCGTATGAGCTTACCAATT-TCAG
*
37733143 CTTGTATGAGCTTACCAATTT
1 CTCGTATGAGCTTACCAATTT
37733164 ATAGCTTGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (24 bp):
CTCGTATGAGCTTACCAATTTCAG
Found at i:37733169 original size:25 final size:24
Alignment explanation
Indices: 37733096--37733172 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 24
37733086 GCTACAACTC
*
37733096 GTATGAGCTTACCAATTTGCAGCTC
1 GTATGAGCTTACCAATTT-CAGCTT
* * *
37733121 GTAAGAGTTTACCGATTCTCAGCTT
1 GTATGAGCTTACCAATT-TCAGCTT
*
37733146 GTATGAGCTTACCAATTTATAGCTT
1 GTATGAGCTTACCAATTT-CAGCTT
37733171 GT
1 GT
37733173 GAAAGCATAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.02
25 40 0.95
26 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (24 bp):
GTATGAGCTTACCAATTTCAGCTT
Found at i:37733187 original size:50 final size:50
Alignment explanation
Indices: 37733093--37733203 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
37733083 TGAGCTACAA
* **
37733093 CTCGTATGAGCTTACCAATTTGCAGCTCGTAAGAGTTTACCGATTC-TCAG
1 CTCGTATGAGCTTACCAATTTACAGCTCGTAAGAGCATACCGATTCAT-AG
* * * *
37733143 CTTGTATGAGCTTACCAATTTATAGCTTGTGAA-AGCATATCGATTCATAG
1 CTCGTATGAGCTTACCAATTTACAGCTCGT-AAGAGCATACCGATTCATAG
37733193 CTCGTATGAGC
1 CTCGTATGAGC
37733204 ATACATGTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 48 0.94
51 3 0.06
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (50 bp):
CTCGTATGAGCTTACCAATTTACAGCTCGTAAGAGCATACCGATTCATAG
Found at i:37740092 original size:15 final size:15
Alignment explanation
Indices: 37740072--37740100 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37740062 ATGCTACATA
37740072 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
37740087 CACCGTGTTATCAA
1 CACCGTGTTATCAA
37740101 GCAATAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:37743998 original size:25 final size:25
Alignment explanation
Indices: 37743970--37744019 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
37743960 GTTTCATATA
37743970 CATGTATCATCCAATTCAATTTTCC
1 CATGTATCATCCAATTCAATTTTCC
37743995 CATGTATCATCCAATTCAATTTTCC
1 CATGTATCATCCAATTCAATTTTCC
37744020 TATACCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40
Consensus pattern (25 bp):
CATGTATCATCCAATTCAATTTTCC
Found at i:37744028 original size:30 final size:30
Alignment explanation
Indices: 37743961--37744030 Score: 89
Period size: 25 Copynumber: 2.5 Consensus size: 30
37743951 ATAAATTATG
*
37743961 TTTCATATA-CATGTATCATCCAATTCAAT
1 TTTCCTATACCATGTATCATCCAATTCAAT
37743990 TTT-C----CCATGTATCATCCAATTCAAT
1 TTTCCTATACCATGTATCATCCAATTCAAT
37744015 TTTCCTATACCATGTA
1 TTTCCTATACCATGTA
37744031 ATAACATATC
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
25 23 0.68
26 1 0.03
29 3 0.09
30 7 0.21
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.41
Consensus pattern (30 bp):
TTTCCTATACCATGTATCATCCAATTCAAT
Found at i:37747917 original size:12 final size:13
Alignment explanation
Indices: 37747900--37747929 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
37747890 CGACCAGCCC
37747900 ATATTAATTTT-T
1 ATATTAATTTTAT
37747912 ATATTAATTTTAT
1 ATATTAATTTTAT
37747925 ATATT
1 ATATT
37747930 TTTAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATATTAATTTTAT
Found at i:37748092 original size:30 final size:30
Alignment explanation
Indices: 37748056--37748112 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
37748046 CTTAACAAGC
37748056 AAATGCCTCTAAAATAATAACAAAATTAAT
1 AAATGCCTCTAAAATAATAACAAAATTAAT
*
37748086 AAATGCCTTTAAAATAATAACAAAATT
1 AAATGCCTCTAAAATAATAACAAAATT
37748113 TTTACAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAT
Found at i:37748182 original size:22 final size:22
Alignment explanation
Indices: 37748157--37748204 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
37748147 CAATAACAAC
*
37748157 AAAATGGTAGCAACATAGTAG-T
1 AAAATGGTAGCAAAATAG-AGAT
37748179 AAAATGGTAGCAAAATAGAGAT
1 AAAATGGTAGCAAAATAGAGAT
37748201 AAAA
1 AAAA
37748205 CAACAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.54, C:0.06, G:0.21, T:0.19
Consensus pattern (22 bp):
AAAATGGTAGCAAAATAGAGAT
Found at i:37748188 original size:11 final size:11
Alignment explanation
Indices: 37748156--37748194 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37748146 ACAATAACAA
37748156 CAAAATGGTAG
1 CAAAATGGTAG
* *
37748167 CAACATAGTAG
1 CAAAATGGTAG
*
37748178 TAAAATGGTAG
1 CAAAATGGTAG
37748189 CAAAAT
1 CAAAAT
37748195 AGAGATAAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.49, C:0.10, G:0.21, T:0.21
Consensus pattern (11 bp):
CAAAATGGTAG
Found at i:37748644 original size:23 final size:23
Alignment explanation
Indices: 37748617--37748664 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
37748607 GCCTCTTCCG
37748617 CTTCTATACATATGACCTTTCTT
1 CTTCTATACATATGACCTTTCTT
37748640 CTTCTATACATATGACCTTTCTT
1 CTTCTATACATATGACCTTTCTT
37748663 CT
1 CT
37748665 ATTAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.27, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTCTATACATATGACCTTTCTT
Found at i:37750806 original size:27 final size:27
Alignment explanation
Indices: 37750775--37750952 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37750765 TAAATTGTAC
37750775 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37750802 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37750828 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37750856 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37750884 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37750911 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37750938 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37750953 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37750889 original size:82 final size:81
Alignment explanation
Indices: 37750776--37750931 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37750766 AAATTGTACA
* *
37750776 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37750840 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37750857 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37750922 TGCGAGTTGA
65 TGCGAATTGA
37750932 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37750943 original size:82 final size:81
Alignment explanation
Indices: 37750772--37750952 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37750762 GATTAAATTG
* *
37750772 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37750837 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37750853 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37750917 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37750935 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37750953 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37758995 original size:27 final size:27
Alignment explanation
Indices: 37758964--37759141 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37758954 TAAATTGTAC
37758964 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37758991 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37759017 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37759045 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37759073 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37759100 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37759127 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37759142 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37759078 original size:82 final size:81
Alignment explanation
Indices: 37758965--37759120 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37758955 AAATTGTACA
* *
37758965 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37759029 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37759046 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37759111 TGCGAGTTGA
65 TGCGAATTGA
37759121 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37759132 original size:82 final size:81
Alignment explanation
Indices: 37758961--37759141 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37758951 GATTAAATTG
* *
37758961 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37759026 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37759042 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37759106 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37759124 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37759142 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37760556 original size:21 final size:21
Alignment explanation
Indices: 37760530--37760592 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
37760520 ATCATTATTG
37760530 TAAATTTTTTATAATTTTTAA
1 TAAATTTTTTATAATTTTTAA
*
37760551 TAAA-TTTTTA-AATTTTCTTTA
1 TAAATTTTTTATAA-TTT-TTAA
*
37760572 TAATTTCTTTTATAATTTTTA
1 TAAATT-TTTTATAATTTTTA
37760593 CATCTTTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
19 2 0.06
20 9 0.26
21 10 0.29
22 3 0.09
23 8 0.24
24 2 0.06
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (21 bp):
TAAATTTTTTATAATTTTTAA
Found at i:37760571 original size:11 final size:11
Alignment explanation
Indices: 37760532--37760589 Score: 52
Period size: 10 Copynumber: 5.5 Consensus size: 11
37760522 CATTATTGTA
37760532 AATTT-TTTAT
1 AATTTCTTTAT
*
37760542 AATTT-TTAAT
1 AATTTCTTTAT
*
37760552 AAATT-TTTA-
1 AATTTCTTTAT
37760561 AATTTTCTTTAT
1 AA-TTTCTTTAT
37760573 AATTTCTTTTAT
1 AATTTC-TTTAT
37760585 AATTT
1 AATTT
37760590 TTACATCTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 2 0.05
10 18 0.45
11 8 0.20
12 12 0.30
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (11 bp):
AATTTCTTTAT
Found at i:37760609 original size:43 final size:41
Alignment explanation
Indices: 37760503--37760617 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 41
37760493 TTATAGATAG
* * *
37760503 TAATTTTTAATAATTTT-ATCATTATTGTA-AA-TT-TTTTA
1 TAATTTTTAATAATTTTGA-AATTTTTTTATAATTTCTTTTA
*
37760541 TAATTTTTAATAAATTTTTAAATTTTCTTTATAATTTCTTTTA
1 TAATTTTTAAT-AATTTTGAAATTTT-TTTATAATTTCTTTTA
*
37760584 TAATTTTTACAT-CTTTTGAATATTTTTTTATAAT
1 TAATTTTTA-ATAATTTTGAA-ATTTTTTTATAAT
37760618 ATTTTAAATC
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
38 11 0.17
39 10 0.16
40 4 0.06
41 2 0.03
42 16 0.25
43 19 0.30
44 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (41 bp):
TAATTTTTAATAATTTTGAAATTTTTTTATAATTTCTTTTA
Found at i:37761495 original size:125 final size:126
Alignment explanation
Indices: 37761185--37761537 Score: 523
Period size: 126 Copynumber: 2.8 Consensus size: 126
37761175 TAATTTCGAG
**
37761185 TTGACGTTTCTGATAAAATAGTATAAAATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTG
* *
37761250 AAATCGCGCCCTCGTGGACGCGCTTTTGCTATAGTAGGTCACGGAAGAAATAATTTTTTTT
66 AAATCGCGCCATCGTAGACGCGCTTTTGCTATAGTAGGTCACGGAAGAAATAATTTTTTTT
*
37761311 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTG
* * *
37761376 AAATCGCGGCCAT-GTCAG-CGCGCTTTTGCTATAGTAGGTCATGTAAGAAAT-TTTTTTTTT
66 AAATCGC-GCCATCGT-AGACGCGCTTTTGCTATAGTAGGTCACGGAAGAAATAATTTTTTTT
* *
37761436 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGTTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTG
* * * * * *
37761501 AAATTGCGCCCTCATGGATGCGCTTTTGCTACAGTAG
66 AAATCGCGCCATCGTAGACGCGCTTTTGCTATAGTAG
37761538 CATGTTTGGG
Statistics
Matches: 207, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
124 5 0.02
125 95 0.46
126 102 0.49
127 5 0.02
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (126 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTG
AAATCGCGCCATCGTAGACGCGCTTTTGCTATAGTAGGTCACGGAAGAAATAATTTTTTTT
Found at i:37765144 original size:23 final size:23
Alignment explanation
Indices: 37765114--37765157 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
37765104 CGTGTACTGA
*
37765114 TAATTAAATTAGGTTAGGGTTTT
1 TAATTAAATTAGGTTAAGGTTTT
37765137 TAATTAAATTAGGTTAAGGTT
1 TAATTAAATTAGGTTAAGGTT
37765158 AGGGTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.45
Consensus pattern (23 bp):
TAATTAAATTAGGTTAAGGTTTT
Found at i:37765157 original size:29 final size:29
Alignment explanation
Indices: 37765124--37765486 Score: 287
Period size: 29 Copynumber: 12.7 Consensus size: 29
37765114 TAATTAAATT
37765124 AGGTTAGGGTTTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
*
37765153 AGGTTAGGGTTTTTAAATAAATT-GGATTA
1 AGGTTAGGGTTTTTAATTAAATTAGG-TTA
* * * *
37765182 GGGTTAGGATTTTTAATTAGATTAGATTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
* *
37765211 AGGTTA-GGTTTTTAAGTT-AA--GGGTTT
1 AGGTTAGGGTTTTTAA-TTAAATTAGGTTA
* *
37765237 AGG---GGTTTTAATTAAATT--A-G--GTTA
1 AGGTTAGGGTTT--TT-AATTAAATTAGGTTA
* * *
37765261 GGGTTAGGGTTTGTAATTAATTTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
37765290 AGGGTTAGGGTTTTTAATTAAATTAGGTTA
1 A-GGTTAGGGTTTTTAATTAAATTAGGTTA
* * * *
37765320 GGGTTAGGCTTTGTAATTAATTTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
* *
37765349 GGGGTTAGGGTTTTTAATTAAATTAGATTA
1 -AGGTTAGGGTTTTTAATTAAATTAGGTTA
* *
37765379 GGGTTAGGGTTTTTAACTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
37765408 GGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTA
1 -----A-GGTTAGGGTTTTTAATTAAATTAGGTTA
37765443 A-G-T----TTTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
37765466 AGGTTAGGGTTTTTAAGTTAA
1 AGGTTAGGGTTTTTAA-TTAA
37765487 GGGTTTAGGG
Statistics
Matches: 269, Mismatches: 34, Indels: 61
0.74 0.09 0.17
Matches are distributed among these distances:
23 21 0.08
24 14 0.05
25 3 0.01
26 10 0.04
27 8 0.03
28 12 0.04
29 117 0.43
30 57 0.21
35 27 0.10
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.44
Consensus pattern (29 bp):
AGGTTAGGGTTTTTAATTAAATTAGGTTA
Found at i:37765264 original size:30 final size:29
Alignment explanation
Indices: 37765230--37765486 Score: 297
Period size: 29 Copynumber: 8.7 Consensus size: 29
37765220 TTTTAAGTTA
*
37765230 AGGGTTTAGGGGTTTTAATTAAATTAGGTT
1 AGGG-TTAGGGTTTTTAATTAAATTAGGTT
* *
37765260 AGGGTTAGGGTTTGTAATTAATTTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
37765289 AAGGGTTAGGGTTTTTAATTAAATTAGGTT
1 -AGGGTTAGGGTTTTTAATTAAATTAGGTT
* * *
37765319 AGGGTTAGGCTTTGTAATTAATTTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
*
37765348 AGGGGTTAGGGTTTTTAATTAAATTAGATT
1 A-GGGTTAGGGTTTTTAATTAAATTAGGTT
*
37765378 AGGGTTAGGGTTTTTAACTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
**
37765407 AGGGTTAGGGTTAGGGTTT--TT-AATTAAATT
1 AGGGTTAGGGTT----TTTAATTAAATTAGGTT
* *
37765437 A-GGTTAAGTTTTTTAATTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
*
37765465 AAGGTTAGGGTTTTTAAGTTAA
1 AGGGTTAGGGTTTTTAA-TTAA
37765487 GGGTTTAGGG
Statistics
Matches: 193, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
25 3 0.02
27 2 0.01
28 8 0.04
29 108 0.56
30 68 0.35
31 1 0.01
33 3 0.02
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (29 bp):
AGGGTTAGGGTTTTTAATTAAATTAGGTT
Found at i:37765305 original size:59 final size:58
Alignment explanation
Indices: 37765125--37765589 Score: 436
Period size: 59 Copynumber: 8.3 Consensus size: 58
37765115 AATTAAATTA
* *
37765125 GGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAAATAAATT-GGATT-AG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTTTAATTAAATTAGG-TTAAG
* * * *
37765183 GGTTAGGATTTTTAATTAGATTAGATTAAGGTTA-GG-TTT--TT--A--A-GTTAAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTAATTAAATTAGGTTAAG
* *
37765232 GGTTTAGGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTGTAATTAATTTAGGTTAAG
1 GG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT-TAATTAAATTAGGTTAAG
* * *
37765292 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGCTTTGTAATTAATTTAGGTTAGG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT-TAATTAAATTAGGTTAAG
* *
37765351 GGTTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTTAACTAAATTAGGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTTTAATTAAATTAGGTTA-----AG
*
37765415 GGTTAGGGTTTTTAATTAAATTAGGTTA-AGTT----TTTTAATTAAATTAGGTTAA-
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTAATTAAATTAGGTTAAG
*
37765467 GGTTAGGGTTTTTAAGTT--A--A-G---GGTTTAGGGTTTTTAATTAAATTAGGTT-AG
1 GGTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTAGGG-TTTTAATTAAATTAGGTTAAG
*
37765518 GGTTAGGGTTTTTAATTAAATTAGGTTA-AGTT----TTTTAATTAAATTAGGTTAA-
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTAATTAAATTAGGTTAAG
37765570 GGTTAGGGTTTTTAAGTTAA
1 GGTTAGGGTTTTTAA-TTAA
37765590 GAGTTTAGGG
Statistics
Matches: 345, Mismatches: 25, Indels: 79
0.77 0.06 0.18
Matches are distributed among these distances:
46 2 0.01
48 3 0.01
49 6 0.02
50 30 0.09
51 37 0.11
52 51 0.15
53 10 0.03
54 1 0.00
55 6 0.02
57 4 0.01
58 49 0.14
59 104 0.30
60 11 0.03
63 3 0.01
64 28 0.08
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (58 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTAATTAAATTAGGTTAAG
Found at i:37765442 original size:23 final size:23
Alignment explanation
Indices: 37765415--37765624 Score: 131
Period size: 23 Copynumber: 8.4 Consensus size: 23
37765405 TTAGGGTTAG
37765415 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
* *
37765438 GGTTAAGTTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
* *
37765461 GGTTAAGGTTAGGGTTT--TTAAGTTAA
1 GGTTAGGGTT----TTTAATTAAATT-A
37765487 GGGTTTAGGGTTTTTAATTAAATTAGGTTA
1 -GG-TTAGGGTTTTTAATT-AA--A--TTA
37765517 GGGTTAGGGTTTTTAATTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
* *
37765541 GGTTAAGTTTTTTAATTAAATTAGGTTAA
1 GGTTAGGGTTTTTAATT-AA--A--TT-A
*
37765570 GGTTAGGGTTTTTAAGTT-AA-GA
1 GGTTAGGGTTTTTAA-TTAAATTA
*
37765592 GTTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
*
37765615 AGTTAGGGTT
1 GGTTAGGGTT
37765625 AGATCCGAGA
Statistics
Matches: 149, Mismatches: 15, Indels: 46
0.71 0.07 0.22
Matches are distributed among these distances:
21 2 0.01
22 17 0.11
23 54 0.36
24 8 0.05
25 6 0.04
26 6 0.04
27 7 0.05
28 12 0.08
29 29 0.19
30 6 0.04
31 2 0.01
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.47
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:37765522 original size:51 final size:51
Alignment explanation
Indices: 37765262--37765626 Score: 313
Period size: 51 Copynumber: 6.7 Consensus size: 51
37765252 ATTAGGTTAG
* * *
37765262 GGTTAGGGTTTGTAATTAATTTAGGTTAAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAAGGTTTTTAATTAAATTAGGTT-AGGGTTAGGGTTTTTAATTAAA-TA
* *
37765315 GGTTAGGGTTAGGCTTTGTAATTAATTTAGGTTAGGGGTTAGGGTTTTTAATTAAATTAGATTA
1 GGTTA-----AGG-TTTTTAATTAAATTAGGTTA-GGGTTAGGGTTTTTAATT--A--A-A-TA
* *
37765379 GGGTTAGGGTTTTTAACTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTA
1 -GGTTAAGGTTTTTAA-TTAA--A--TTA-GGTTAGGGTTAGGGTTTTTAATTAAA-TA
* * *
37765438 GGTTAAGTTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAAGTT-AA-G
1 GGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAA-TTAAATA
*
37765488 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA
1 GG-TTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAA-TA
* * *
37765541 GGTTAAGTTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAAGTT-AAGA
1 GGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAA-TTAAATA
* * *
37765592 GTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAG
1 GGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAG
37765627 ATCCGAGATT
Statistics
Matches: 264, Mismatches: 23, Indels: 52
0.78 0.07 0.15
Matches are distributed among these distances:
50 4 0.02
51 72 0.27
52 63 0.24
53 14 0.05
55 1 0.00
57 3 0.01
58 16 0.06
59 47 0.18
60 6 0.02
61 1 0.00
62 1 0.00
63 1 0.00
64 25 0.09
65 10 0.04
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (51 bp):
GGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATA
Found at i:37765525 original size:29 final size:29
Alignment explanation
Indices: 37765486--37765589 Score: 130
Period size: 29 Copynumber: 3.7 Consensus size: 29
37765476 TTTTAAGTTA
37765486 AGGGTTTAGGGTTTTTAATTAAATTAGGTT
1 AGGG-TTAGGGTTTTTAATTAAATTAGGTT
37765516 AGGGTTAGGGTTTTTAATTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
*
37765545 A-----A-GTTTTTTAATTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
*
37765568 AAGGTTAGGGTTTTTAAGTTAA
1 AGGGTTAGGGTTTTTAA-TTAA
37765590 GAGTTTAGGG
Statistics
Matches: 65, Mismatches: 2, Indels: 14
0.80 0.02 0.17
Matches are distributed among these distances:
23 21 0.32
24 1 0.02
28 1 0.02
29 34 0.52
30 8 0.12
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (29 bp):
AGGGTTAGGGTTTTTAATTAAATTAGGTT
Found at i:37765564 original size:103 final size:103
Alignment explanation
Indices: 37765264--37765626 Score: 440
Period size: 103 Copynumber: 3.3 Consensus size: 103
37765254 TAGGTTAGGG
* * *
37765264 TTAGGGTTTGTAATTAATTTAGGTTAAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGC
1 TTAGGGTTTTTAATTAAATTAGGTT-AGGGTTAGGGTTTTTAATTAAATTAGGTTA-AGTT----
* * *
37765329 TTTGTAATTAATTTAGGTTAGGGGTTAGGGTTTTTAA-TTAAATTAGATTAGGG
60 TTT-TAATTAAATTAGGTTA-AGGTTAGGGTTTTTAAGTT--A--AG---A-GT
*
37765382 TTAGGGTTTTTAACTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAAGTT
1 TTAGGGTTTTTAA-TTAA--A--TTA-GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAAGTT
*
37765447 TTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGT
60 TTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGAGT
37765491 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAAGTTTTTTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAAGTTTTTTAA
37765556 TTAAATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGAGT
66 TTAAATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGAGT
*
37765594 TTAGGGTTTTTAATTAAATTAAGTTAGGGTTAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
37765627 ATCCGAGATT
Statistics
Matches: 227, Mismatches: 11, Indels: 29
0.85 0.04 0.11
Matches are distributed among these distances:
103 113 0.50
104 3 0.01
106 1 0.00
108 3 0.01
109 14 0.06
113 2 0.01
115 1 0.00
116 15 0.07
117 17 0.07
118 15 0.07
119 3 0.01
122 3 0.01
123 33 0.15
124 4 0.02
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.45
Consensus pattern (103 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAAGTTTTTTAA
TTAAATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGAGT
Found at i:37765599 original size:22 final size:20
Alignment explanation
Indices: 37765565--37765610 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 20
37765555 ATTAAATTAG
37765565 GTTAAGGTTAGGGTTTTTAA
1 GTTAAGGTTAGGGTTTTTAA
37765585 GTTAAGAGTTTAGGGTTTTTAA
1 GTTAAG-G-TTAGGGTTTTTAA
37765607 -TTAA
1 GTTAA
37765611 ATTAAGTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 6 0.25
21 5 0.21
22 13 0.54
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (20 bp):
GTTAAGGTTAGGGTTTTTAA
Found at i:37765725 original size:7 final size:7
Alignment explanation
Indices: 37765715--37765745 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
37765705 TATATACATT
37765715 ATACTAA
1 ATACTAA
37765722 ATACTAA
1 ATACTAA
37765729 ATACTAA
1 ATACTAA
37765736 ATACTAA
1 ATACTAA
37765743 ATA
1 ATA
37765746 TCAATTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (7 bp):
ATACTAA
Found at i:37766397 original size:23 final size:22
Alignment explanation
Indices: 37766367--37766411 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
37766357 AGCATATCAG
37766367 ATTCTTTCAATTTCGGGTGAAT
1 ATTCTTTCAATTTCGGGTGAAT
*
37766389 NATTCTTTCAATTTCGGTTGAAT
1 -ATTCTTTCAATTTCGGGTGAAT
37766412 CTTCATCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.47
Consensus pattern (22 bp):
ATTCTTTCAATTTCGGGTGAAT
Found at i:37777393 original size:56 final size:56
Alignment explanation
Indices: 37777307--37777474 Score: 336
Period size: 56 Copynumber: 3.0 Consensus size: 56
37777297 GATATACCAA
37777307 AAAGGGGGATAAAAAGATGAAATTTGTATATGTATAGGTCTTACATATTTTATCTT
1 AAAGGGGGATAAAAAGATGAAATTTGTATATGTATAGGTCTTACATATTTTATCTT
37777363 AAAGGGGGATAAAAAGATGAAATTTGTATATGTATAGGTCTTACATATTTTATCTT
1 AAAGGGGGATAAAAAGATGAAATTTGTATATGTATAGGTCTTACATATTTTATCTT
37777419 AAAGGGGGATAAAAAGATGAAATTTGTATATGTATAGGTCTTACATATTTTATCTT
1 AAAGGGGGATAAAAAGATGAAATTTGTATATGTATAGGTCTTACATATTTTATCTT
37777475 CTATATGCTT
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 112 1.00
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.38
Consensus pattern (56 bp):
AAAGGGGGATAAAAAGATGAAATTTGTATATGTATAGGTCTTACATATTTTATCTT
Found at i:37793631 original size:79 final size:81
Alignment explanation
Indices: 37793529--37793713 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
37793519 GCTCCTCGTT
* *
37793529 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
37793591 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
37793609 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
37793673 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
37793689 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37793714 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:37793713 original size:40 final size:40
Alignment explanation
Indices: 37793529--37793713 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
37793519 GCTCCTCGTT
* * *
37793529 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
37793569 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
37793609 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
37793648 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
37793689 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37793714 CATCATTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 76 0.61
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:37818673 original size:24 final size:24
Alignment explanation
Indices: 37818645--37818692 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
37818635 AAAGAATTCA
* *
37818645 TGGCTTCTTCCACAACCTATATGG
1 TGGCTTCGTCCACAACCTACATGG
37818669 TGGCTTCGTCCACAACCTACATGG
1 TGGCTTCGTCCACAACCTACATGG
37818693 CAACTTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (24 bp):
TGGCTTCGTCCACAACCTACATGG
Found at i:37824070 original size:40 final size:40
Alignment explanation
Indices: 37823972--37824554 Score: 938
Period size: 40 Copynumber: 14.6 Consensus size: 40
37823962 TCCTCGTTCA
* * * * *
37823972 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37824011 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37824051 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37824091 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37824131 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37824171 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37824211 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37824251 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37824291 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37824331 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37824371 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37824411 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37824451 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
37824491 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37824531 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37824555 CAGCATTCAA
Statistics
Matches: 518, Mismatches: 22, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
39 37 0.07
40 473 0.91
41 8 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37835362 original size:15 final size:14
Alignment explanation
Indices: 37835337--37835372 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 14
37835327 ATATTTGTAT
37835337 TATTTTTAATTTAA
1 TATTTTTAATTTAA
37835351 TATTTATTAATTTAA
1 TATTT-TTAATTTAA
37835366 TATTTTT
1 TATTTTT
37835373 CTTTCATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTTTTAATTTAA
Found at i:37848321 original size:39 final size:40
Alignment explanation
Indices: 37848226--37848448 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
37848216 TTGAATGATG
*
37848226 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
37848264 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
37848305 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37848344 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37848383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37848422 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37848449 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37848412 original size:79 final size:81
Alignment explanation
Indices: 37848226--37848448 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
37848216 TTGAATGATG
* * *
37848226 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
37848287 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
37848305 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
37848367 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
37848383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
37848447 TG
66 TG
37848449 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:37848470 original size:79 final size:79
Alignment explanation
Indices: 37848226--37848481 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
37848216 TTGAATGATG
* * * *
37848226 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
37848287 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
37848305 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
37848369 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
37848383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
37848447 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
37848463 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37848482 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:37857019 original size:38 final size:35
Alignment explanation
Indices: 37856943--37857020 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 35
37856933 TTACTGTTGT
* *
37856943 TACTACTATGTTACTAATTGCATGTTCAACATGCC
1 TACTACTATGTTACTAATTGCATGATCAACATGAC
*
37856978 TACTACTATTGTTAAACTGATTGCATGAT-AATCATGAC
1 TACTACTA-TGTT--ACTAATTGCATGATCAA-CATGAC
37857016 TACTA
1 TACTA
37857021 TTTCTATATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
35 8 0.22
36 4 0.11
37 2 0.06
38 22 0.61
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (35 bp):
TACTACTATGTTACTAATTGCATGATCAACATGAC
Found at i:37857877 original size:16 final size:15
Alignment explanation
Indices: 37857854--37857887 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
37857844 TCTTTTCAAA
37857854 TTTTTTTTGATTTTT
1 TTTTTTTTGATTTTT
37857869 TTTTATTTTGATTTTT
1 TTTT-TTTTGATTTTT
37857885 TTT
1 TTT
37857888 CGAACTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.85
Consensus pattern (15 bp):
TTTTTTTTGATTTTT
Found at i:37858228 original size:21 final size:21
Alignment explanation
Indices: 37858202--37858264 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
37858192 TTGGTATTTG
37858202 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37858223 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* * *
37858244 GGTATTTGATACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
37858265 ATGGTTCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 22 0.61
22 14 0.39
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37858233 original size:11 final size:11
Alignment explanation
Indices: 37858213--37858245 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
37858203 GAATTGGTAC
37858213 GAAATGGTATG
1 GAAATGGTATG
*
37858224 GAATTGGTAT-
1 GAAATGGTATG
37858234 GAAATGGTATG
1 GAAATGGTATG
37858245 G
1 G
37858246 TATTTGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (11 bp):
GAAATGGTATG
Found at i:37859359 original size:10 final size:10
Alignment explanation
Indices: 37859344--37859385 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
37859334 TTTGCAAGTT
37859344 TTGAGCTAAA
1 TTGAGCTAAA
* *
37859354 TTGAGCTGAT
1 TTGAGCTAAA
*
37859364 TTGAGCT-CA
1 TTGAGCTAAA
37859373 TTGAGCTAAA
1 TTGAGCTAAA
37859383 TTG
1 TTG
37859386 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:37861304 original size:23 final size:22
Alignment explanation
Indices: 37861269--37861331 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 22
37861259 ACTCTCTCAC
*
37861269 TTTTTCCTTTCTTTTT-ATCATT
1 TTTTTCTTTTCTTTTTAATC-TT
37861291 TTTTTCTTTCTCTTTTTCAATCTT
1 TTTTTCTTT-TCTTTTT-AATCTT
*
37861315 TTTTTCTTGTACTTTTT
1 TTTTTCTT-TTCTTTTT
37861332 CTTTCTTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 8 0.23
23 7 0.20
24 16 0.46
25 4 0.11
ACGTcount: A:0.08, C:0.17, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTTCTTTTCTTTTTAATCTT
Found at i:37861316 original size:21 final size:21
Alignment explanation
Indices: 37861270--37861322 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
37861260 CTCTCTCACT
* *
37861270 TTTTCCTTTCTTTTTATCATTT
1 TTTT-CTTTCTTTTTATCAATC
37861292 TTTTCTTTCTCTTTT-TCAATC
1 TTTTCTTTCT-TTTTATCAATC
37861313 TTTT-TTTCTT
1 TTTTCTTTCTT
37861323 GTACTTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 1 0.04
20 5 0.18
21 14 0.50
22 8 0.29
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTCTTTCTTTTTATCAATC
Found at i:37863534 original size:20 final size:20
Alignment explanation
Indices: 37863501--37863559 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 20
37863491 TGCTCCACTC
* *
37863501 AGCTCAAATCAGCTCACTTG
1 AGCTCAATTTAGCTCACTTG
* * **
37863521 AGCTTATTTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACTTG
*
37863541 AGCTCAATTTAGCTTACTT
1 AGCTCAATTTAGCTCACTT
37863560 TCAGCCCGTT
Statistics
Matches: 28, Mismatches: 11, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACTTG
Found at i:37863545 original size:30 final size:31
Alignment explanation
Indices: 37863511--37863570 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
37863501 AGCTCAAATC
* * *
37863511 AGCTCACTTGAGCTTA-TTTTAGCTCGTTTG
1 AGCTCAATTGAGCTTACTTTCAGCCCGTTTG
*
37863541 AGCTCAATTTAGCTTACTTTCAGCCCGTTT
1 AGCTCAATTGAGCTTACTTTCAGCCCGTTT
37863571 CTTTTATCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (31 bp):
AGCTCAATTGAGCTTACTTTCAGCCCGTTTG
Found at i:37865750 original size:22 final size:22
Alignment explanation
Indices: 37865719--37865783 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
37865709 ACCTTTTTGA
* *
37865719 ACCATTACCAATTCATACCAAAT
1 ACCA-TACCATTTCGTACCAAAT
*
37865742 ACCATACCATTTCGTACCAACT
1 ACCATACCATTTCGTACCAAAT
*
37865764 TCCATACCATTTCGTACCAA
1 ACCATACCATTTCGTACCAA
37865784 TTCCTAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
22 34 0.89
23 4 0.11
ACGTcount: A:0.35, C:0.34, G:0.03, T:0.28
Consensus pattern (22 bp):
ACCATACCATTTCGTACCAAAT
Found at i:37866871 original size:27 final size:27
Alignment explanation
Indices: 37866833--37866884 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
37866823 TGTTTGTAGG
*
37866833 TACATGCATGGACAACATTGAAGATAA
1 TACATGCATGGACAACAATGAAGATAA
37866860 TACATGCATGGACAACAATGAAGAT
1 TACATGCATGGACAACAATGAAGAT
37866885 GCTTCAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.21
Consensus pattern (27 bp):
TACATGCATGGACAACAATGAAGATAA
Found at i:37868780 original size:90 final size:90
Alignment explanation
Indices: 37868667--37868865 Score: 398
Period size: 90 Copynumber: 2.2 Consensus size: 90
37868657 CAAGATTTGA
37868667 AATCTTGATTTTCTTGATTCTTGAAATTGCTCCGAATAGCAAAATTGGGCCAAGATTCGATTTCT
1 AATCTTGATTTTCTTGATTCTTGAAATTGCTCCGAATAGCAAAATTGGGCCAAGATTCGATTTCT
37868732 TGATTTTCTTGAAAACAAGAAAGTG
66 TGATTTTCTTGAAAACAAGAAAGTG
37868757 AATCTTGATTTTCTTGATTCTTGAAATTGCTCCGAATAGCAAAATTGGGCCAAGATTCGATTTCT
1 AATCTTGATTTTCTTGATTCTTGAAATTGCTCCGAATAGCAAAATTGGGCCAAGATTCGATTTCT
37868822 TGATTTTCTTGAAAACAAGAAAGTG
66 TGATTTTCTTGAAAACAAGAAAGTG
37868847 AATCTTGATTTTCTTGATT
1 AATCTTGATTTTCTTGATT
37868866 TGAGCCCATC
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 109 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (90 bp):
AATCTTGATTTTCTTGATTCTTGAAATTGCTCCGAATAGCAAAATTGGGCCAAGATTCGATTTCT
TGATTTTCTTGAAAACAAGAAAGTG
Found at i:37870605 original size:23 final size:22
Alignment explanation
Indices: 37870568--37870622 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 22
37870558 GCTGAATTCA
*
37870568 TGAACCATCTTTAATGTTTTAGTG
1 TGAACCATCTTTAAT-TGTT-GTG
*
37870592 TGAACCCT-TTTAATTGTTGTG
1 TGAACCATCTTTAATTGTTGTG
37870613 TGAACACATC
1 TGAAC-CATC
37870623 AGTAGCCGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 8 0.31
22 5 0.19
23 6 0.23
24 7 0.27
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (22 bp):
TGAACCATCTTTAATTGTTGTG
Found at i:37872366 original size:27 final size:28
Alignment explanation
Indices: 37872336--37872402 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
37872326 AAAAGTGAGA
37872336 GAAAAAGAAAATGA-A-GAAAAGAAAATT
1 GAAAAAGAAAATGAGATGAAAA-AAAATT
** *
37872363 GAAAAAGAATTTGAGATTGAGAAAAAATT
1 GAAAAAGAAAATGAGA-TGAAAAAAAATT
37872392 GAAAAAGAAAA
1 GAAAAAGAAAA
37872403 AGATGTTGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
27 12 0.38
28 1 0.03
29 15 0.47
30 4 0.12
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.15
Consensus pattern (28 bp):
GAAAAAGAAAATGAGATGAAAAAAAATT
Found at i:37872411 original size:29 final size:28
Alignment explanation
Indices: 37872357--37872415 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
37872347 TGAAGAAAAG
***
37872357 AAAATTGAAAAAGAATTTGAGATTGAGAA
1 AAAATTGAAAAAGAAAAAGAGATTGA-AA
37872386 AAAATTGAAAAAGAAAAAGATG-TTGAAA
1 AAAATTGAAAAAGAAAAAGA-GATTGAAA
37872414 AA
1 AA
37872416 GAAACGAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 4 0.15
29 21 0.81
30 1 0.04
ACGTcount: A:0.61, C:0.00, G:0.19, T:0.20
Consensus pattern (28 bp):
AAAATTGAAAAAGAAAAAGAGATTGAAA
Found at i:37874494 original size:27 final size:27
Alignment explanation
Indices: 37874456--37874507 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
37874446 TGTTTGTAGG
* *
37874456 TACATGCATGGACAGCATTGAAGATAA
1 TACATGCATGGACAACAATGAAGATAA
37874483 TACATGCATGGACAACAATGAAGAT
1 TACATGCATGGACAACAATGAAGAT
37874508 GCTTCAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (27 bp):
TACATGCATGGACAACAATGAAGATAA
Found at i:37878623 original size:20 final size:20
Alignment explanation
Indices: 37878580--37878624 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
37878570 AAGGAAAACG
* *
37878580 AAAAAGAAAAGAAAAATGAT
1 AAAAAGAAAAGAAAAATCAC
37878600 AAAAAG-AAAGAAAAAATCAC
1 AAAAAGAAAAG-AAAAATCAC
37878620 AAAAA
1 AAAAA
37878625 AATGTGAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.78, C:0.04, G:0.11, T:0.07
Consensus pattern (20 bp):
AAAAAGAAAAGAAAAATCAC
Found at i:37895690 original size:23 final size:22
Alignment explanation
Indices: 37895653--37895707 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 22
37895643 GCTGAATTCA
*
37895653 TGAACCATCTTTAATGTTTTAGTG
1 TGAACCATCTTTAAT-TGTT-GTG
*
37895677 TGAACCCT-TTTAATTGTTGTG
1 TGAACCATCTTTAATTGTTGTG
37895698 TGAACACATC
1 TGAAC-CATC
37895708 AGTAGCCGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 8 0.31
22 5 0.19
23 6 0.23
24 7 0.27
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (22 bp):
TGAACCATCTTTAATTGTTGTG
Found at i:37898363 original size:12 final size:12
Alignment explanation
Indices: 37898348--37898415 Score: 84
Period size: 12 Copynumber: 5.7 Consensus size: 12
37898338 TTTTCTCTCA
*
37898348 CTTTTTCGATTT
1 CTTTTTCTATTT
*
37898360 CTTTTTCTTTTT
1 CTTTTTCTATTT
*
37898372 CGTTTTCTATTT
1 CTTTTTCTATTT
37898384 CTTTTTC-ACTTT
1 CTTTTTCTA-TTT
*
37898396 CTTTTTCTTTTT
1 CTTTTTCTATTT
37898408 CTTTTTCT
1 CTTTTTCT
37898416 TCCTCTTCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
11 1 0.02
12 47 0.98
ACGTcount: A:0.04, C:0.19, G:0.03, T:0.74
Consensus pattern (12 bp):
CTTTTTCTATTT
Found at i:37898369 original size:18 final size:18
Alignment explanation
Indices: 37898348--37898408 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
37898338 TTTTCTCTCA
37898348 CTTTTTCGATTTCTTTTT
1 CTTTTTCGATTTCTTTTT
* *
37898366 CTTTTTCGTTTTCTATTT
1 CTTTTTCGATTTCTTTTT
37898384 CTTTTTC-ACTTTCTTTTT
1 CTTTTTCGA-TTTCTTTTT
37898402 CTTTTTC
1 CTTTTTC
37898409 TTTTTCTTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.05, C:0.20, G:0.03, T:0.72
Consensus pattern (18 bp):
CTTTTTCGATTTCTTTTT
Found at i:37898377 original size:7 final size:6
Alignment explanation
Indices: 37898357--37898416 Score: 84
Period size: 6 Copynumber: 10.0 Consensus size: 6
37898347 ACTTTTTCGA
* * **
37898357 TTTCTT TTTCTT TTTCGT TTTCTA TTTCTT TTTCAC TTTCTT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
37898405 TTTCTT TTTCTT
1 TTTCTT TTTCTT
37898417 CCTCTTCATT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTCTT
Found at i:37898414 original size:18 final size:18
Alignment explanation
Indices: 37898348--37898416 Score: 86
Period size: 18 Copynumber: 3.8 Consensus size: 18
37898338 TTTTCTCTCA
37898348 CTTTTTCGA-TTTCTTTTT
1 CTTTTTC-ATTTTCTTTTT
* *
37898366 CTTTTTCGTTTTCTATTT
1 CTTTTTCATTTTCTTTTT
*
37898384 CTTTTTCACTTTCTTTTT
1 CTTTTTCATTTTCTTTTT
*
37898402 CTTTTTCTTTTTCTT
1 CTTTTTCATTTTCTT
37898417 CCTCTTCATT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.04, C:0.19, G:0.03, T:0.74
Consensus pattern (18 bp):
CTTTTTCATTTTCTTTTT
Done.