Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 122 of 126
Found at i:37898935 original size:21 final size:21
Alignment explanation
Indices: 37898909--37898971 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
37898899 TTGGTATTTG
37898909 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37898930 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
37898951 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
37898972 AATGGTTCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37900983 original size:7 final size:7
Alignment explanation
Indices: 37900971--37901007 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
37900961 ACAACTTGAT
37900971 TTTTTTA
1 TTTTTTA
37900978 TTTTTTA
1 TTTTTTA
37900985 -TTTTTA
1 TTTTTTA
37900991 -TTTTTA
1 TTTTTTA
37900997 TTTTTTA
1 TTTTTTA
37901004 TTTT
1 TTTT
37901008 ATTTCACGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 12 0.41
7 17 0.59
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:37900988 original size:6 final size:6
Alignment explanation
Indices: 37900972--37901011 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
37900962 CAACTTGATT
37900972 TTTTTA TTTTTTA TTTTTA TTTTTA TTTTT- TATTTTA TTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA T-TTTTA TTT
37901012 CACGTTACGA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 1 0.03
6 23 0.74
7 7 0.23
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:37900990 original size:13 final size:13
Alignment explanation
Indices: 37900971--37901011 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
37900961 ACAACTTGAT
37900971 TTTTTTATTTTT-
1 TTTTTTATTTTTA
37900983 TATTTTTATTTTTA
1 T-TTTTTATTTTTA
37900997 TTTTTTA-TTTTA
1 TTTTTTATTTTTA
37901009 TTT
1 TTT
37901012 CACGTTACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 9 0.33
13 17 0.63
14 1 0.04
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:37900996 original size:19 final size:18
Alignment explanation
Indices: 37900972--37901011 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
37900962 CAACTTGATT
37900972 TTTTTATTTTTTATTTTTA
1 TTTTTATTTTTTA-TTTTA
37900991 TTTTTATTTTTTATTTTA
1 TTTTTATTTTTTATTTTA
37901009 TTT
1 TTT
37901012 CACGTTACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTATTTTTTATTTTA
Found at i:37911421 original size:40 final size:40
Alignment explanation
Indices: 37911321--37911585 Score: 263
Period size: 40 Copynumber: 6.7 Consensus size: 40
37911311 GCTCCTCGTT
* * * * *
37911321 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* ** *
37911361 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
37911400 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * *
37911440 CAAAGGCCTTCGGGGCTTAACCCGAAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCG-GATTTAGTATCTCGCA
*
37911480 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
37911520 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
37911561 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37911586 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
39 39 0.20
40 140 0.72
41 16 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:37911594 original size:41 final size:41
Alignment explanation
Indices: 37911517--37911594 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37911507 TTTGTATCTC
* * *
37911517 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37911558 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37911595 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37913114 original size:8 final size:9
Alignment explanation
Indices: 37913098--37913123 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
37913088 ACAAAATCAG
37913098 TCAAAAAAA
1 TCAAAAAAA
37913107 TCAAAAAAA
1 TCAAAAAAA
37913116 TCAAAAAA
1 TCAAAAAA
37913124 GACGAAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.77, C:0.12, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAAAA
Found at i:37923839 original size:206 final size:206
Alignment explanation
Indices: 37923485--37923894 Score: 784
Period size: 206 Copynumber: 2.0 Consensus size: 206
37923475 ATTTTATCAA
37923485 CCGAGTCCCGTACAAATTTGAAAATTATTGATAAAAATTTTGGTGACTTAATTCTTAAAAGATCC
1 CCGAGTCCCGTACAAATTTGAAAATTATTGATAAAAATTTTGGTGACTTAATTCTTAAAAGATCC
*
37923550 CCTCATTTTGATCCGTTTAATTGTTATTCTTCGATTGTGGTTGATAAAGTCATTACGAAAGGAAG
66 CCTCATTTTGATCCGATTAATTGTTATTCTTCGATTGTGGTTGATAAAGTCATTACGAAAGGAAG
37923615 CGTGAGTTGTTATTCTCTTGATTTGCCTTGTGTAAAATCTGCAAATTTGTGCAAATCTGTTTTGG
131 CGTGAGTTGTTATTCTCTTGATTTGCCTTGTGTAAAATCTGCAAATTTGTGCAAATCTGTTTTGG
37923680 TGAATAAGGAT
196 TGAATAAGGAT
* *
37923691 CCGAGTCCCGTGCAGATTTGAAAATTATTGATAAAAATTTTGGTGACTTAATTCTTAAAAGATCC
1 CCGAGTCCCGTACAAATTTGAAAATTATTGATAAAAATTTTGGTGACTTAATTCTTAAAAGATCC
*
37923756 CTTCATTTTGATCCGATTAATTGTTATTCTTCGATTGTGGTTGATAAAGTCATTACGAAAGGAAG
66 CCTCATTTTGATCCGATTAATTGTTATTCTTCGATTGTGGTTGATAAAGTCATTACGAAAGGAAG
37923821 CGTGAGTTGTTATTCTCTTGATTTGCCTTGTGTAAAATCTGCAAATTTGTGCAAATCTGTTTTGG
131 CGTGAGTTGTTATTCTCTTGATTTGCCTTGTGTAAAATCTGCAAATTTGTGCAAATCTGTTTTGG
37923886 TGAATAAGG
196 TGAATAAGG
37923895 TAATGAAATT
Statistics
Matches: 200, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
206 200 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (206 bp):
CCGAGTCCCGTACAAATTTGAAAATTATTGATAAAAATTTTGGTGACTTAATTCTTAAAAGATCC
CCTCATTTTGATCCGATTAATTGTTATTCTTCGATTGTGGTTGATAAAGTCATTACGAAAGGAAG
CGTGAGTTGTTATTCTCTTGATTTGCCTTGTGTAAAATCTGCAAATTTGTGCAAATCTGTTTTGG
TGAATAAGGAT
Found at i:37926078 original size:24 final size:21
Alignment explanation
Indices: 37926031--37926080 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
37926021 CTACTGGTGT
*
37926031 GTTCACACAACAATTAAAAGG
1 GTTCACACAAAAATTAAAAGG
*
37926052 GTTCACACTAAAACATTAAAGATG
1 GTTCACAC-AAAA-ATTAAA-AGG
37926076 GTTCA
1 GTTCA
37926081 TGAATTTGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 3 0.12
23 6 0.25
24 7 0.29
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (21 bp):
GTTCACACAAAAATTAAAAGG
Found at i:37938249 original size:27 final size:27
Alignment explanation
Indices: 37938219--37938282 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
37938209 GCTGTCCATG
*
37938219 CATGTATGTATTATCTTCAATGCTGTT
1 CATGCATGTATTATCTTCAATGCTGTT
* *
37938246 CATGCATGTATTATCTTCAATGTTTTT
1 CATGCATGTATTATCTTCAATGCTGTT
37938273 CATGCATGTA
1 CATGCATGTA
37938283 CCTACAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (27 bp):
CATGCATGTATTATCTTCAATGCTGTT
Found at i:37957043 original size:22 final size:23
Alignment explanation
Indices: 37956988--37957030 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
37956978 AATATGTTTA
37956988 TTTACAGTTTATTAAATTAAGTG
1 TTTACAGTTTATTAAATTAAGTG
37957011 TTTACAGTTTATT-AATTAAG
1 TTTACAGTTTATTAAATTAAG
37957031 CTTATTAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.49
Consensus pattern (23 bp):
TTTACAGTTTATTAAATTAAGTG
Found at i:37961117 original size:20 final size:20
Alignment explanation
Indices: 37961070--37961118 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
37961060 GACGAGCTGA
* * *
37961070 AAGTAAGCTAAATTGAGCTC
1 AAGTGAGCTAAAATAAGCTC
**
37961090 AAACGAGCTAAAATAAGCTC
1 AAGTGAGCTAAAATAAGCTC
37961110 AAGTGAGCT
1 AAGTGAGCT
37961119 GATTTGAGCT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (20 bp):
AAGTGAGCTAAAATAAGCTC
Found at i:37961117 original size:30 final size:31
Alignment explanation
Indices: 37961061--37961118 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
37961051 GATAAAAGAG
* *
37961061 ACGAGCTGAAAGTAAGCTAAATTGAGCTCAA
1 ACGAGCTGAAAATAAGCTAAAGTGAGCTCAA
*
37961092 ACGAGCT-AAAATAAGCTCAAGTGAGCT
1 ACGAGCTGAAAATAAGCTAAAGTGAGCT
37961119 GATTTGAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.19
Consensus pattern (31 bp):
ACGAGCTGAAAATAAGCTAAAGTGAGCTCAA
Found at i:37961295 original size:21 final size:21
Alignment explanation
Indices: 37961247--37961295 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
37961237 ATTAAGCTGG
*
37961247 CACGAGGGCCAATAACTCGAT
1 CACGAGTGCCAATAACTCGAT
37961268 CACGAGTGCCAATAACTCGAT
1 CACGAGTGCCAATAACTCGAT
37961289 CACGAGT
1 CACGAGT
37961296 TAAGAGATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (21 bp):
CACGAGTGCCAATAACTCGAT
Found at i:37965489 original size:8 final size:7
Alignment explanation
Indices: 37965449--37965486 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
37965439 AAAATACCGT
37965449 AAAATAA
1 AAAATAA
37965456 AAAATAA
1 AAAATAA
37965463 AAAATAA
1 AAAATAA
*
37965470 AGAATAA
1 AAAATAA
37965477 AATAATAA
1 AA-AATAA
37965485 AA
1 AA
37965487 TAAAAGATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 21 0.75
8 7 0.25
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:37966180 original size:44 final size:44
Alignment explanation
Indices: 37966130--37966406 Score: 205
Period size: 44 Copynumber: 6.5 Consensus size: 44
37966120 GATCTACTCT
* * *
37966130 ACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTATGATTTTAATCCGCTCC
* *
37966174 ACTGCAACTTCAGGGAGAT-AGAAT-TA-GATTCTTCTATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAG-ATCTATGATT-TT-AATCCGCTCC
*** *
37966218 ACTGCAACTTCAGGGAGATAAGA-CTAT-A-TGCGATCTGCT-C
1 ACTGCAACTTCAGGGAGATAAGATCTATGATTTTAATCCGCTCC
** * * * * *
37966258 TTTGCAACTTCAGAGAGAAAAGATTTGTGGTTTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTATGATTTTAATCCGCTCC
* * * * * *
37966302 ACTGCAACTTCAGGGAGATAGGAT-T-GGA-TGTGATCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATCTATGATTTTAATCCGCTCC
* * * * *
37966343 ACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAACCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTATGATTTTAATCCGCTCC
*
37966387 ACTACAACTTCAGGGAGATA
1 ACTGCAACTTCAGGGAGATA
37966407 GGATTATTGG
Statistics
Matches: 179, Mismatches: 41, Indels: 26
0.73 0.17 0.11
Matches are distributed among these distances:
40 20 0.11
41 39 0.22
42 5 0.03
43 15 0.08
44 98 0.55
45 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATCTATGATTTTAATCCGCTCC
Found at i:37966303 original size:128 final size:125
Alignment explanation
Indices: 37966132--37966365 Score: 324
Period size: 128 Copynumber: 1.8 Consensus size: 125
37966122 TCTACTCTAC
*
37966132 TGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGAA
1 TGCAACTTCAGAGAGAAAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGAA
* * * *
37966197 TTAGATTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTATATGCGATCTGCTCTT
66 TTAGA-T-GT-GATCTGCTCCACTACAACTTCAGAGAGATAAGACTATATGCGATCTGCTCTT
*** ** *
37966260 TGCAACTTCAGAGAGAAAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
1 TGCAACTTCAGAGAGAAAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGAA
* *
37966325 TTGGATGTGATCTGCTCTACTACAACTTCAGAGAGATAAGA
66 TTAGATGTGATCTGCTCCACTACAACTTCAGAGAGATAAGA
37966366 TCTGTGGTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
125 29 0.31
126 1 0.01
127 1 0.01
128 62 0.67
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (125 bp):
TGCAACTTCAGAGAGAAAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGAA
TTAGATGTGATCTGCTCCACTACAACTTCAGAGAGATAAGACTATATGCGATCTGCTCTT
Found at i:37966384 original size:85 final size:84
Alignment explanation
Indices: 37966213--37966412 Score: 292
Period size: 85 Copynumber: 2.4 Consensus size: 84
37966203 TCTTCTATCT
* * * * *
37966213 GCTCCACTGCAACTTCAGGGAGATAAGACTATATGCGATCTGCTCTTTGCAACTTCAGAGAGAAA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAGATGCGATCTGCTCTCTACAACTTCAGAGAGAAA
* *
37966278 AGATTTGTGGTTTTAATCC
66 AGATCTGTGGTTTTAACCC
* * *
37966297 GCTCCACTGCAACTTCAGGGAGATAGGATTGGATGTGATCTGCTCTACTACAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTAGATGCGATCTGCTCT-CTACAACTTCAGAGAGAA
37966362 AAGATCTGTGGTTTTAACCC
65 AAGATCTGTGGTTTTAACCC
*
37966382 GCTCCACTACAACTTCAGGGAGATAGGATTA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTA
37966413 TTGGCCTCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 41 0.40
85 62 0.60
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (84 bp):
GCTCCACTGCAACTTCAGGGAGATAGGATTAGATGCGATCTGCTCTCTACAACTTCAGAGAGAAA
AGATCTGTGGTTTTAACCC
Found at i:37966551 original size:50 final size:50
Alignment explanation
Indices: 37966494--37966877 Score: 238
Period size: 50 Copynumber: 7.7 Consensus size: 50
37966484 TCGTGGAAAC
* * * * *
37966494 AAGATTCGCCGTCGTAGCTTCAATTTGTTCCACTACATAGCTAGGGAAGT
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACAGCTAGGGAAGT
** * ** * * **
37966544 AAGATTCGTCATTGTAGCTTCAATCTATTTAACTGCA-ATG-TCGGGGAAAC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACA-GCT-AGGGAAGT
* ** * * *
37966594 AGGATTCACCGTCATAGCTTCAATCTATTCCACTACACCGCCAAGGAAGT
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACAGCTAGGGAAGT
* * * ** ** * **
37966644 AAGATTCACTGTTGTGGCTTCAGTCTATTTAACTACA-ATATCGGGGAAAC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACAGCT-AGGGAAGT
* * ** * *
37966694 AAGATTCACCGTAGTAGCTTCAATATGGTCCACTACACCGCCAGGGAAGT
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACAGCTAGGGAAGT
* ** * * **
37966744 AAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCA-ATG-TCGGGGAAAC
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACA-GCT-AGGGAAGT
** * * *
37966794 AAGATTCACCGTCATAGCTTCAATCTGTTCCACTACACCGCTAGGGGAGT
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACAGCTAGGGAAGT
**
37966844 AAGATTTGCCGTTGTAGCTTCAATCTATTCCACT
1 AAGATTCACCGTTGTAGCTTCAATCTATTCCACT
37966878 GAAATGCCAA
Statistics
Matches: 236, Mismatches: 88, Indels: 20
0.69 0.26 0.06
Matches are distributed among these distances:
49 2 0.01
50 233 0.99
51 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (50 bp):
AAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACAGCTAGGGAAGT
Found at i:37966592 original size:100 final size:100
Alignment explanation
Indices: 37966462--37966872 Score: 583
Period size: 100 Copynumber: 4.1 Consensus size: 100
37966452 AATTTGCCAT
* * * * *
37966462 CTTCAATCT-GTTAACTGCAATGTCGTGGAAACAAGATTCGCCGTCGTAGCTTCAATTTGTTCCA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCA
** * * *
37966526 CTACATAGCTAGGGAAGTAAGATTCGTCATTGTAG
66 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGTAG
* *
37966561 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAGGATTCACCGTCATAGCTTCAATCTATTCCA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCA
* * * *
37966626 CTACACCGCCAAGGAAGTAAGATTCACTGTTGTGG
66 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGTAG
* * * * *
37966661 CTTCAGTCTATTTAACTACAATATCGGGGAAACAAGATTCACCGT-AGTAGCTTCAATATGGTCC
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCACCGTCA-TAGCTTCAATCTGTTCC
37966725 ACTACACCGCCAGGGAAGTAAGATTCGCCGTTGTAG
65 ACTACACCGCCAGGGAAGTAAGATTCGCCGTTGTAG
37966761 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCA
* * *
37966826 CTACACCGCTAGGGGAGTAAGATTTGCCGTTGTAG
66 CTACACCGCCAGGGAAGTAAGATTCGCCGTTGTAG
37966861 CTTCAATCTATT
1 CTTCAATCTATT
37966873 CCACTGAAAT
Statistics
Matches: 274, Mismatches: 35, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
99 10 0.04
100 263 0.96
101 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (100 bp):
CTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCA
CTACACCGCCAGGGAAGTAAGATTCGCCGTTGTAG
Found at i:37975143 original size:44 final size:44
Alignment explanation
Indices: 37975080--37975173 Score: 161
Period size: 44 Copynumber: 2.1 Consensus size: 44
37975070 GTCTCGACTT
37975080 TCATTTTCATATGCTTATCAAATATAAGTACTATATTAACCAAA
1 TCATTTTCATATGCTTATCAAATATAAGTACTATATTAACCAAA
* * *
37975124 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAATCAAA
1 TCATTTTCATATGCTTATCAAATATAAGTACTATATTAACCAAA
37975168 TCATTT
1 TCATTT
37975174 ATTGAATATA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (44 bp):
TCATTTTCATATGCTTATCAAATATAAGTACTATATTAACCAAA
Found at i:37975229 original size:66 final size:67
Alignment explanation
Indices: 37975116--37975241 Score: 186
Period size: 66 Copynumber: 1.9 Consensus size: 67
37975106 AGTACTATAT
* *
37975116 TAACCAAATCATTTTCATATGCTTATCAAATATAAGTATTGTATTAATCAAATCA-TTTATTGAA
1 TAACCAAATCATTTTCATAAGCTTATCAAATATAAGCATTGTATTAATCAAATCACTTTATTGAA
37975180 TA
66 TA
*
37975182 TAACCAAATCATTTTCATAAGCTTATCAAATAT-AGCATCTAGT-TTAATCAATTCACTTTA
1 TAACCAAATCATTTTCATAAGCTTATCAAATATAAGCAT-T-GTATTAATCAAATCACTTTA
37975242 AATTGTAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
65 4 0.07
66 44 0.81
67 6 0.11
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.40
Consensus pattern (67 bp):
TAACCAAATCATTTTCATAAGCTTATCAAATATAAGCATTGTATTAATCAAATCACTTTATTGAA
TA
Found at i:37975801 original size:13 final size:13
Alignment explanation
Indices: 37975783--37975807 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37975773 ACACTCAAAT
37975783 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
37975796 TTCTCAAAAGCA
1 TTCTCAAAAGCA
37975808 ATGAAGAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:37978378 original size:23 final size:23
Alignment explanation
Indices: 37978332--37978380 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
37978322 TTGAACCATA
* **
37978332 ACCATTTCGTACCAAATCGTATT
1 ACCATTTCGAACCAAATCACATT
37978355 ACCATTTCGAACCAAATCACATT
1 ACCATTTCGAACCAAATCACATT
37978378 ACC
1 ACC
37978381 GTTTTGTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.06, T:0.29
Consensus pattern (23 bp):
ACCATTTCGAACCAAATCACATT
Found at i:37980499 original size:12 final size:12
Alignment explanation
Indices: 37980482--37980506 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37980472 AAAATCTGAT
37980482 TTCAATGTGTAA
1 TTCAATGTGTAA
37980494 TTCAATGTGTAA
1 TTCAATGTGTAA
37980506 T
1 T
37980507 GTTTATAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TTCAATGTGTAA
Found at i:37986744 original size:37 final size:37
Alignment explanation
Indices: 37986694--37986772 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37986684 TTATTACGAA
* * *
37986694 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37986731 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37986768 GTCTT
1 GTCTT
37986773 TAGAGCTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37987112 original size:49 final size:49
Alignment explanation
Indices: 37986891--37987974 Score: 2031
Period size: 49 Copynumber: 22.3 Consensus size: 49
37986881 CCCTTCGGGA
* * * * *
37986891 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37986938 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37986985 CTTATCAC--ATATATACACTTTCACATTTATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987032 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987079 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987128 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987177 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987226 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987275 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987324 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987373 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987422 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987471 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987520 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987569 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987618 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987667 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987716 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987765 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987814 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987863 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987912 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37987961 CTTATCACATATAT
1 CTTATCACATATAT
37987975 GCATGTTCAC
Statistics
Matches: 1020, Mismatches: 13, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
46 1 0.00
47 133 0.13
49 886 0.87
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37991407 original size:16 final size:16
Alignment explanation
Indices: 37991386--37991417 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37991376 ATTTTGTTGC
*
37991386 TAATTCTACTTTTTCA
1 TAATTCCACTTTTTCA
37991402 TAATTCCACTTTTTCA
1 TAATTCCACTTTTTCA
37991418 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATTCCACTTTTTCA
Found at i:37991847 original size:50 final size:51
Alignment explanation
Indices: 37991731--37991859 Score: 161
Period size: 50 Copynumber: 2.5 Consensus size: 51
37991721 TCCGATACAT
* * * * *
37991731 GTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCTGGTACGC
1 GTAGTAGCCTGCACATAGTACTACACATGCGATCCAAGCTATCTGGCACAC
* * * * *
37991782 ATAGTAGCCTGCACATAGTACTATACATGCGA-CCTATCTTTCTGGCACAC
1 GTAGTAGCCTGCACATAGTACTACACATGCGATCCAAGCTATCTGGCACAC
37991832 GTAGTAGCCTGCACATAGTACTACACAT
1 GTAGTAGCCTGCACATAGTACTACACAT
37991860 ATGACCATCA
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 38 0.58
51 28 0.42
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (51 bp):
GTAGTAGCCTGCACATAGTACTACACATGCGATCCAAGCTATCTGGCACAC
Found at i:37992267 original size:46 final size:46
Alignment explanation
Indices: 37992214--37992491 Score: 540
Period size: 46 Copynumber: 6.0 Consensus size: 46
37992204 CAAAGAAAAG
37992214 ACCTCGACCCACTATCAA-GAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATG-ATGATAGGAACCTTGGTATATGATGA
37992260 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37992306 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37992352 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37992398 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37992444 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37992490 AC
1 AC
37992492 GCCACACTAT
Statistics
Matches: 231, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
46 230 1.00
47 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (46 bp):
ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
Found at i:37994600 original size:19 final size:18
Alignment explanation
Indices: 37994564--37994603 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37994554 TTTCCACTAG
*
37994564 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
37994582 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
37994601 TTT
1 TTT
37994604 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:37995685 original size:15 final size:15
Alignment explanation
Indices: 37995665--37995703 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
37995655 AGCTTCGTCT
37995665 TTTTTTTTTCACGAA-
1 TTTTTTTTTCAC-AAG
*
37995680 TTTTTTTTGCACAAG
1 TTTTTTTTTCACAAG
37995695 TTTTTTTTT
1 TTTTTTTTT
37995704 TCAACTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.15, C:0.10, G:0.08, T:0.67
Consensus pattern (15 bp):
TTTTTTTTTCACAAG
Found at i:37995758 original size:11 final size:11
Alignment explanation
Indices: 37995742--37995783 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
37995732 GAATAAAAAC
37995742 TTTTTTTTGAA
1 TTTTTTTTGAA
37995753 TTTTTTTT--A
1 TTTTTTTTGAA
*
37995762 TTTTTTTTGAT
1 TTTTTTTTGAA
37995773 TTTTTTTTGAA
1 TTTTTTTTGAA
37995784 AATGCTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 9 0.33
11 18 0.67
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:37995779 original size:10 final size:10
Alignment explanation
Indices: 37995742--37995779 Score: 60
Period size: 9 Copynumber: 3.8 Consensus size: 10
37995732 GAATAAAAAC
37995742 TTTTTTTTGAA
1 TTTTTTTTG-A
37995753 TTTTTTTT-A
1 TTTTTTTTGA
37995762 TTTTTTTTGA
1 TTTTTTTTGA
37995772 TTTTTTTT
1 TTTTTTTT
37995780 TGAAAATGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.35
10 9 0.35
11 8 0.31
ACGTcount: A:0.11, C:0.00, G:0.05, T:0.84
Consensus pattern (10 bp):
TTTTTTTTGA
Found at i:37995780 original size:20 final size:20
Alignment explanation
Indices: 37995742--37995779 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
37995732 GAATAAAAAC
37995742 TTTTTTTTGAATTTTTTTTA
1 TTTTTTTTGAATTTTTTTTA
37995762 TTTTTTTTG-ATTTTTTTT
1 TTTTTTTTGAATTTTTTTT
37995780 TGAAAATGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.11, C:0.00, G:0.05, T:0.84
Consensus pattern (20 bp):
TTTTTTTTGAATTTTTTTTA
Found at i:37997565 original size:46 final size:46
Alignment explanation
Indices: 37997509--37997785 Score: 529
Period size: 46 Copynumber: 6.0 Consensus size: 46
37997499 CAAAGAAAAG
*
37997509 ACCTCAACCCACTATCAA-GAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATG-ATGATAGGAACCTTGGTATATGATGA
37997555 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37997601 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37997647 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37997693 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37997739 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
37997785 A
1 A
37997786 TGCCACACTA
Statistics
Matches: 229, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
46 228 1.00
47 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (46 bp):
ACCTCGACCCACTATCAATGATGATAGGAACCTTGGTATATGATGA
Found at i:37998451 original size:21 final size:23
Alignment explanation
Indices: 37998406--37998452 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
37998396 TCACCTGCAA
* *
37998406 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
37998429 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
37998450 TAA
1 TAA
37998453 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:38000514 original size:19 final size:18
Alignment explanation
Indices: 38000478--38000517 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
38000468 TTTCCACTAG
*
38000478 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
38000496 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
38000515 TTT
1 TTT
38000518 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:38001597 original size:14 final size:15
Alignment explanation
Indices: 38001578--38001615 Score: 69
Period size: 14 Copynumber: 2.6 Consensus size: 15
38001568 TAGCTTCTTC
38001578 TTTTTTTCACGAAAT
1 TTTTTTTCACGAAAT
38001593 TTTTTTTCACG-AAT
1 TTTTTTTCACGAAAT
38001607 TTTTTTTCA
1 TTTTTTTCA
38001616 ACTTGATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.21, C:0.13, G:0.05, T:0.61
Consensus pattern (15 bp):
TTTTTTTCACGAAAT
Found at i:38001669 original size:12 final size:12
Alignment explanation
Indices: 38001652--38001698 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
38001642 AATGGAAACT
38001652 AAATTTTTTTTA
1 AAATTTTTTTTA
*
38001664 AAATTTTTTTTC
1 AAATTTTTTTTA
*
38001676 GAATTTTTTTTGA
1 AAATTTTTTTT-A
38001689 AAATTTTTTT
1 AAATTTTTTT
38001699 GAATTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 21 0.70
13 9 0.30
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (12 bp):
AAATTTTTTTTA
Found at i:38001673 original size:13 final size:13
Alignment explanation
Indices: 38001655--38001698 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
38001645 GGAAACTAAA
38001655 TTTTTTTTAAAA-
1 TTTTTTTTAAAAT
**
38001667 TTTTTTTTCGAAT
1 TTTTTTTTAAAAT
*
38001680 TTTTTTTGAAAAT
1 TTTTTTTTAAAAT
38001693 TTTTTT
1 TTTTTT
38001699 GAATTTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (13 bp):
TTTTTTTTAAAAT
Found at i:38001685 original size:24 final size:23
Alignment explanation
Indices: 38001653--38001709 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 23
38001643 ATGGAAACTA
38001653 AATTTTTTTT-AAAATTTTTTTTCG
1 AATTTTTTTTGAAAA-TTTTTTT-G
38001677 AATTTTTTTTGAAAATTTTTTTG
1 AATTTTTTTTGAAAATTTTTTTG
38001700 AATTTTTTTT
1 AATTTTTTTT
38001710 CGAAGATGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 11 0.34
24 17 0.53
25 4 0.12
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (23 bp):
AATTTTTTTTGAAAATTTTTTTG
Found at i:38001707 original size:12 final size:12
Alignment explanation
Indices: 38001653--38001709 Score: 62
Period size: 12 Copynumber: 4.8 Consensus size: 12
38001643 ATGGAAACTA
**
38001653 AATTTTTTTTAA
1 AATTTTTTTTTG
*
38001665 AATTTTTTTTCG
1 AATTTTTTTTTG
38001677 AA-TTTTTTTTG
1 AATTTTTTTTTG
**
38001688 AAAATTTTTTTG
1 AATTTTTTTTTG
38001700 AATTTTTTTT
1 AATTTTTTTT
38001710 CGAAGATGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
11 10 0.26
12 28 0.74
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:38003420 original size:27 final size:27
Alignment explanation
Indices: 38003379--38003430 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
38003369 TCATTGAAGC
* *
38003379 ATCTTCATTGCTGTCCATGCATGTATT
1 ATCTTCAATGATGTCCATGCATGTATT
38003406 ATCTTCAATGATGTCCATGCATGTA
1 ATCTTCAATGATGTCCATGCATGTA
38003431 CCTACAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (27 bp):
ATCTTCAATGATGTCCATGCATGTATT
Found at i:38007354 original size:23 final size:23
Alignment explanation
Indices: 38007290--38007366 Score: 75
Period size: 24 Copynumber: 3.3 Consensus size: 23
38007280 AATTGAAATT
* *
38007290 GAAAGAAAAGAAAGAAAAAGTACAA
1 GAAA-AAAAGAATGAAAAAG-AAAA
*
38007315 GAAAAAAAGATTGAAAAAGAGAAA
1 GAAAAAAAGAATGAAAAAGA-AAA
* *
38007339 GAAAAAAATAAT-AAAAAGAAAG
1 GAAAAAAAGAATGAAAAAGAAAA
38007361 GAAAAA
1 GAAAAA
38007367 GTGATGGAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
22 8 0.18
23 8 0.18
24 25 0.56
25 4 0.09
ACGTcount: A:0.74, C:0.01, G:0.18, T:0.06
Consensus pattern (23 bp):
GAAAAAAAGAATGAAAAAGAAAA
Found at i:38009664 original size:20 final size:20
Alignment explanation
Indices: 38009641--38009687 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
38009631 GGGTTGAGAT
*
38009641 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
38009661 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
38009681 TGAGCTG
1 TGAGCTG
38009688 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:38016924 original size:135 final size:135
Alignment explanation
Indices: 38016682--38016956 Score: 491
Period size: 135 Copynumber: 2.0 Consensus size: 135
38016672 AGAAAAGTCC
** *
38016682 TAAGAAGCCTTGAAATCCCGAAAGATTCTACAACTCCCTTCAAACGGCTCTAATCTCCCCTCCAA
1 TAAGAAGCCTTGAAATCAAGAAAGATTCTACAAATCCCTTCAAACGGCTCTAATCTCCCCTCCAA
38016747 TGAAGAACAATGGCAAGAAGAAGACTGAAGATGGCTCCCACAATCAAAAAGATTGTTAAAACTAC
66 TGAAGAACAATGGCAAGAAGAAGACTGAAGATGGCTCCCACAATCAAAAAGATTGTTAAAACTAC
38016812 TTCTA
131 TTCTA
*
38016817 TAAGAAGCCTTGAAATCAAGAAATATT-TCACAAATCCCTTCAAACGGCTCTAATCTCCCCTCCA
1 TAAGAAGCCTTGAAATCAAGAAAGATTCT-ACAAATCCCTTCAAACGGCTCTAATCTCCCCTCCA
38016881 ATGAAGAACAATGGCAAGAAGAAGACTGAAGATGGCTCCCACAATCAAAAAGATTGTTAAAACTA
65 ATGAAGAACAATGGCAAGAAGAAGACTGAAGATGGCTCCCACAATCAAAAAGATTGTTAAAACTA
38016946 CTTCTA
130 CTTCTA
38016952 -AAGAA
1 TAAGAA
38016957 AACTCAAGAG
Statistics
Matches: 135, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
134 6 0.04
135 129 0.96
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.21
Consensus pattern (135 bp):
TAAGAAGCCTTGAAATCAAGAAAGATTCTACAAATCCCTTCAAACGGCTCTAATCTCCCCTCCAA
TGAAGAACAATGGCAAGAAGAAGACTGAAGATGGCTCCCACAATCAAAAAGATTGTTAAAACTAC
TTCTA
Found at i:38017533 original size:60 final size:60
Alignment explanation
Indices: 38017451--38017945 Score: 990
Period size: 60 Copynumber: 8.2 Consensus size: 60
38017441 AGATTTGAAA
38017451 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017511 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017571 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017631 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017691 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017751 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017811 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017871 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
1 TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
38017931 TCTTGATTTTCTTGA
1 TCTTGATTTTCTTGA
38017946 AAACAAGAAA
Statistics
Matches: 435, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 435 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (60 bp):
TCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAACTGGGTGAAGATTCGGTT
Found at i:38019190 original size:21 final size:22
Alignment explanation
Indices: 38019161--38019211 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
38019151 TCTCTATCGC
*
38019161 TTTCCTTTTCACCTTTTTCA-T
1 TTTCATTTTCACCTTTTTCACT
**
38019182 TTTCATTTTCTTCTTTTTCACT
1 TTTCATTTTCACCTTTTTCACT
38019204 TTT-ATTTT
1 TTTCATTTT
38019212 TCCCTTCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.10, C:0.22, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCATTTTCACCTTTTTCACT
Found at i:38031145 original size:25 final size:24
Alignment explanation
Indices: 38031117--38031195 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 24
38031107 TCTTGTACAT
38031117 GTATGCTTATACGAGCTGTAAATCG
1 GTATGCTTATA-GAGCTGTAAATCG
* * *
38031142 GTATGCTTACATGAGCTATAAATTG
1 GTATGCTTATA-GAGCTGTAAATCG
38031167 GTATGCTCTCATA-AGCTGTAAATCG
1 GTATGCT-T-ATAGAGCTGTAAATCG
38031192 GTAT
1 GTAT
38031196 ATTTTCACGA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
25 42 0.93
26 1 0.02
27 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (24 bp):
GTATGCTTATAGAGCTGTAAATCG
Found at i:38034705 original size:11 final size:11
Alignment explanation
Indices: 38034689--38034718 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
38034679 GACACGGTTG
*
38034689 TAGAAATACCT
1 TAGAAACACCT
38034700 TAGAAACACCT
1 TAGAAACACCT
38034711 TAGAAACA
1 TAGAAACA
38034719 ATTTAGGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.20
Consensus pattern (11 bp):
TAGAAACACCT
Found at i:38035939 original size:21 final size:21
Alignment explanation
Indices: 38035910--38035949 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
38035900 CATTTAAAAT
* *
38035910 ATCACTATTATTTATTATTTA
1 ATCAATATTATTAATTATTTA
38035931 ATCAATATTATTAATTATT
1 ATCAATATTATTAATTATT
38035950 ATCAAGAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
ATCAATATTATTAATTATTTA
Found at i:38038273 original size:35 final size:35
Alignment explanation
Indices: 38038187--38038313 Score: 141
Period size: 35 Copynumber: 3.6 Consensus size: 35
38038177 GTACATCGTC
* *
38038187 AATCCAACCAAAACACACCAGATGCTCATAAGAGCC
1 AATCCAACCGAAACACACCA-ATGCTCATAAGAGCT
* *
38038223 AATCCAACTGAAACACACCAATGCTCATAACAGCT
1 AATCCAACCGAAACACACCAATGCTCATAAGAGCT
* *
38038258 AATACC-TCCGGAACACACCAATGCTCATAAGAGCT
1 AAT-CCAACCGAAACACACCAATGCTCATAAGAGCT
* *
38038293 AATTC-ACTCAAAACACACCAA
1 AATCCAAC-CGAAACACACCAA
38038314 ACAGAGAGTA
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
34 2 0.03
35 55 0.71
36 20 0.26
ACGTcount: A:0.43, C:0.32, G:0.09, T:0.15
Consensus pattern (35 bp):
AATCCAACCGAAACACACCAATGCTCATAAGAGCT
Found at i:38040058 original size:27 final size:27
Alignment explanation
Indices: 38040028--38040118 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
38040018 CTTTATAATT
* *
38040028 CGCCATAAAGGCATTCTTTTCATATTC
1 CGCCACAAAGGCATTCTTTTCATATTA
* *
38040055 CGCCACAAAGG-GTTTTCTTTCATATTA
1 CGCCACAAAGGCATTCT-TTTCATATTA
* *
38040082 CGCCACAAAGTCTTTC-TTTCATATTA
1 CGCCACAAAGGCATTCTTTTCATATTA
*
38040108 TGCCACAAAGG
1 CGCCACAAAGG
38040119 TTATCATTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
26 22 0.42
27 29 0.55
28 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.34
Consensus pattern (27 bp):
CGCCACAAAGGCATTCTTTTCATATTA
Found at i:38043595 original size:7 final size:7
Alignment explanation
Indices: 38043585--38043611 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
38043575 TCAGTCTCTC
38043585 CTCTCGG
1 CTCTCGG
38043592 CTCTCGG
1 CTCTCGG
38043599 CTCTCGG
1 CTCTCGG
38043606 CTCTCG
1 CTCTCG
38043612 CACTACCCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.44, G:0.26, T:0.30
Consensus pattern (7 bp):
CTCTCGG
Found at i:38052562 original size:20 final size:20
Alignment explanation
Indices: 38052537--38052577 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
38052527 TGGTTTTGAG
38052537 TATGTTCCCACACATTGTCA
1 TATGTTCCCACACATTGTCA
38052557 TATGTTCCCACACATTGTCA
1 TATGTTCCCACACATTGTCA
38052577 T
1 T
38052578 TAATCCTCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.37
Consensus pattern (20 bp):
TATGTTCCCACACATTGTCA
Found at i:38056189 original size:20 final size:20
Alignment explanation
Indices: 38056164--38056212 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
38056154 AGCTAATTGC
38056164 TTGTATTTAGGTACATTT-AG
1 TTGTATTTAGG-ACATTTCAG
*
38056184 TTGTATTTTAGGACATTTCAT
1 TTGTA-TTTAGGACATTTCAG
38056205 TTGTATTT
1 TTGTATTT
38056213 TCATCATTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.55
Consensus pattern (20 bp):
TTGTATTTAGGACATTTCAG
Found at i:38056195 original size:21 final size:21
Alignment explanation
Indices: 38056164--38056213 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
38056154 AGCTAATTGC
38056164 TTGTA-TTTAGGTACATTT-AG
1 TTGTATTTTAGG-ACATTTCAG
*
38056184 TTGTATTTTAGGACATTTCAT
1 TTGTATTTTAGGACATTTCAG
38056205 TTGTATTTT
1 TTGTATTTT
38056214 CATCATTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.41
21 16 0.59
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.56
Consensus pattern (21 bp):
TTGTATTTTAGGACATTTCAG
Found at i:38062190 original size:876 final size:876
Alignment explanation
Indices: 38060499--38062249 Score: 3502
Period size: 876 Copynumber: 2.0 Consensus size: 876
38060489 ACCTCAAGAT
38060499 ACGGATGGAGTGATCACTGGTGAGAAGGTTGAATCTGAAGAGTTTGTCAATGCATAAGACAAAGA
1 ACGGATGGAGTGATCACTGGTGAGAAGGTTGAATCTGAAGAGTTTGTCAATGCATAAGACAAAGA
38060564 AGTTCCACAAATTGTCACTCATATGCCTAATGTCTGACCTTTGAAATTGTTGACACAATCAAATG
66 AGTTCCACAAATTGTCACTCATATGCCTAATGTCTGACCTTTGAAATTGTTGACACAATCAAATG
38060629 TGTTGGTGCAAGCAAATGTATCCCTGCATTTACCTTTCCCACAAAAATTCAGGAAGAATGAACAT
131 TGTTGGTGCAAGCAAATGTATCCCTGCATTTACCTTTCCCACAAAAATTCAGGAAGAATGAACAT
38060694 GACAAGCAGTATCAGCAGTTCCTGGACACACTGAAGCAACTGAAGATCAACATTCCTTTAGTAGA
196 GACAAGCAGTATCAGCAGTTCCTGGACACACTGAAGCAACTGAAGATCAACATTCCTTTAGTAGA
38060759 TGCTCTGGTACAAATTTCAAGTTATGGGAAATTTATGAAAAACCTCTTGTCCAAGAAGAAGAATG
261 TGCTCTGGTACAAATTTCAAGTTATGGGAAATTTATGAAAAACCTCTTGTCCAAGAAGAAGAATG
38060824 TAACAGCCCGATTTTGGGCCTAGTCGGAATAGTGGTTTCGGGACCACAAATCCGACAAGGGAAAA
326 TAACAGCCCGATTTTGGGCCTAGTCGGAATAGTGGTTTCGGGACCACAAATCCGACAAGGGAAAA
38060889 TATGGTTATTATTATATTTTTATGGTCTACAATTTCACGGAAAATTTTCGTAAAAATTTCGTTCG
391 TATGGTTATTATTATATTTTTATGGTCTACAATTTCACGGAAAATTTTCGTAAAAATTTCGTTCG
38060954 AAAATTTCGACGTTTGGGCACTCAATTTAGTCAAAAGGACTAAATTGTAAATAGTGCAAAAGTTG
456 AAAATTTCGACGTTTGGGCACTCAATTTAGTCAAAAGGACTAAATTGTAAATAGTGCAAAAGTTG
38061019 AGTTCTATATGTAGAAGTATCTAATTGATATGAAATTTTAAATTGGAGGTATTTATGTGGTAATT
521 AGTTCTATATGTAGAAGTATCTAATTGATATGAAATTTTAAATTGGAGGTATTTATGTGGTAATT
38061084 AGACCATTAGTTAGTTGATGGACAAAAATAGACATAAGAAATGAGAGAAATAGATTTTTTTAAGT
586 AGACCATTAGTTAGTTGATGGACAAAAATAGACATAAGAAATGAGAGAAATAGATTTTTTTAAGT
38061149 GGGGGCATATTAGTCATTTGGTAATAAAAAAAATAAAATGGGAAAAAGATGACAAAAATCATCAT
651 GGGGGCATATTAGTCATTTGGTAATAAAAAAAATAAAATGGGAAAAAGATGACAAAAATCATCAT
38061214 CTTCCTCATTAGTTGCTGCCGAAATTTGAAGGAAGCCATAGCTAAGGTTTCTTTGCTTTCTCAAG
716 CTTCCTCATTAGTTGCTGCCGAAATTTGAAGGAAGCCATAGCTAAGGTTTCTTTGCTTTCTCAAG
38061279 CTCATAGTAAGTGCATCCTAGCCCCGTTTTTAATGTTCTTCGCATTTTTGGAATCCTCGTAACTC
781 CTCATAGTAAGTGCATCCTAGCCCCGTTTTTAATGTTCTTCGCATTTTTGGAATCCTCGTAACTC
38061344 GGTTTAGCTTATTCTAGCAATAATTCGTGTC
846 GGTTTAGCTTATTCTAGCAATAATTCGTGTC
38061375 ACGGATGGAGTGATCACTGGTGAGAAGGTTGAATCTGAAGAGTTTGTCAATGCATAAGACAAAGA
1 ACGGATGGAGTGATCACTGGTGAGAAGGTTGAATCTGAAGAGTTTGTCAATGCATAAGACAAAGA
38061440 AGTTCCACAAATTGTCACTCATATGCCTAATGTCTGACCTTTGAAATTGTTGACACAATCAAATG
66 AGTTCCACAAATTGTCACTCATATGCCTAATGTCTGACCTTTGAAATTGTTGACACAATCAAATG
38061505 TGTTGGTGCAAGCAAATGTATCCCTGCATTTACCTTTCCCACAAAAATTCAGGAAGAATGAACAT
131 TGTTGGTGCAAGCAAATGTATCCCTGCATTTACCTTTCCCACAAAAATTCAGGAAGAATGAACAT
38061570 GACAAGCAGTATCAGCAGTTCCTGGACACACTGAAGCAACTGAAGATCAACATTCCTTTAGTAGA
196 GACAAGCAGTATCAGCAGTTCCTGGACACACTGAAGCAACTGAAGATCAACATTCCTTTAGTAGA
38061635 TGCTCTGGTACAAATTTCAAGTTATGGGAAATTTATGAAAAACCTCTTGTCCAAGAAGAAGAATG
261 TGCTCTGGTACAAATTTCAAGTTATGGGAAATTTATGAAAAACCTCTTGTCCAAGAAGAAGAATG
38061700 TAACAGCCCGATTTTGGGCCTAGTCGGAATAGTGGTTTCGGGACCACAAATCCGACAAGGGAAAA
326 TAACAGCCCGATTTTGGGCCTAGTCGGAATAGTGGTTTCGGGACCACAAATCCGACAAGGGAAAA
38061765 TATGGTTATTATTATATTTTTATGGTCTACAATTTCACGGAAAATTTTCGTAAAAATTTCGTTCG
391 TATGGTTATTATTATATTTTTATGGTCTACAATTTCACGGAAAATTTTCGTAAAAATTTCGTTCG
38061830 AAAATTTCGACGTTTGGGCACTCAATTTAGTCAAAAGGACTAAATTGTAAATAGTGCAAAAGTTG
456 AAAATTTCGACGTTTGGGCACTCAATTTAGTCAAAAGGACTAAATTGTAAATAGTGCAAAAGTTG
38061895 AGTTCTATATGTAGAAGTATCTAATTGATATGAAATTTTAAATTGGAGGTATTTATGTGGTAATT
521 AGTTCTATATGTAGAAGTATCTAATTGATATGAAATTTTAAATTGGAGGTATTTATGTGGTAATT
38061960 AGACCATTAGTTAGTTGATGGACAAAAATAGACATAAGAAATGAGAGAAATAGATTTTTTTAAGT
586 AGACCATTAGTTAGTTGATGGACAAAAATAGACATAAGAAATGAGAGAAATAGATTTTTTTAAGT
38062025 GGGGGCATATTAGTCATTTGGTAATAAAAAAAATAAAATGGGAAAAAGATGACAAAAATCATCAT
651 GGGGGCATATTAGTCATTTGGTAATAAAAAAAATAAAATGGGAAAAAGATGACAAAAATCATCAT
38062090 CTTCCTCATTAGTTGCTGCCGAAATTTGAAGGAAGCCATAGCTAAGGTTTCTTTGCTTTCTCAAG
716 CTTCCTCATTAGTTGCTGCCGAAATTTGAAGGAAGCCATAGCTAAGGTTTCTTTGCTTTCTCAAG
38062155 CTCATAGTAAGTGCATCCTAGCCCCGTTTTTAATGTTCTTCGCATTTTTGGAATCCTCGTAACTC
781 CTCATAGTAAGTGCATCCTAGCCCCGTTTTTAATGTTCTTCGCATTTTTGGAATCCTCGTAACTC
38062220 GGTTTAGCTTATTCTAGCAATAATTCGTGT
846 GGTTTAGCTTATTCTAGCAATAATTCGTGT
38062250 TAGGGCTCAT
Statistics
Matches: 875, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
876 875 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (876 bp):
ACGGATGGAGTGATCACTGGTGAGAAGGTTGAATCTGAAGAGTTTGTCAATGCATAAGACAAAGA
AGTTCCACAAATTGTCACTCATATGCCTAATGTCTGACCTTTGAAATTGTTGACACAATCAAATG
TGTTGGTGCAAGCAAATGTATCCCTGCATTTACCTTTCCCACAAAAATTCAGGAAGAATGAACAT
GACAAGCAGTATCAGCAGTTCCTGGACACACTGAAGCAACTGAAGATCAACATTCCTTTAGTAGA
TGCTCTGGTACAAATTTCAAGTTATGGGAAATTTATGAAAAACCTCTTGTCCAAGAAGAAGAATG
TAACAGCCCGATTTTGGGCCTAGTCGGAATAGTGGTTTCGGGACCACAAATCCGACAAGGGAAAA
TATGGTTATTATTATATTTTTATGGTCTACAATTTCACGGAAAATTTTCGTAAAAATTTCGTTCG
AAAATTTCGACGTTTGGGCACTCAATTTAGTCAAAAGGACTAAATTGTAAATAGTGCAAAAGTTG
AGTTCTATATGTAGAAGTATCTAATTGATATGAAATTTTAAATTGGAGGTATTTATGTGGTAATT
AGACCATTAGTTAGTTGATGGACAAAAATAGACATAAGAAATGAGAGAAATAGATTTTTTTAAGT
GGGGGCATATTAGTCATTTGGTAATAAAAAAAATAAAATGGGAAAAAGATGACAAAAATCATCAT
CTTCCTCATTAGTTGCTGCCGAAATTTGAAGGAAGCCATAGCTAAGGTTTCTTTGCTTTCTCAAG
CTCATAGTAAGTGCATCCTAGCCCCGTTTTTAATGTTCTTCGCATTTTTGGAATCCTCGTAACTC
GGTTTAGCTTATTCTAGCAATAATTCGTGTC
Found at i:38063145 original size:103 final size:104
Alignment explanation
Indices: 38062901--38063166 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
38062891 GTTGTACATA
** *
38062901 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
38062966 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
38063005 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
38063069 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
38063108 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
38063167 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:38073607 original size:103 final size:104
Alignment explanation
Indices: 38073363--38073628 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
38073353 GTTGTACATA
** *
38073363 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
38073428 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
38073467 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
38073531 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
38073570 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
38073629 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:38075297 original size:20 final size:20
Alignment explanation
Indices: 38075264--38075372 Score: 164
Period size: 20 Copynumber: 5.5 Consensus size: 20
38075254 AACTACNTGG
*
38075264 TTCAGCTCACTCGAGCTCAA
1 TTCAGCTCACACGAGCTCAA
* * **
38075284 GTCAACTCATTCGAGCTCAA
1 TTCAGCTCACACGAGCTCAA
*
38075304 GTCAGCTCACACGAGCTCAA
1 TTCAGCTCACACGAGCTCAA
38075324 TTCAGCTCACACGAGCTCAA
1 TTCAGCTCACACGAGCTCAA
38075344 TTCAGCTCACACGAGCTCAA
1 TTCAGCTCACACGAGCTCAA
38075364 TTCAGCTCA
1 TTCAGCTCA
38075373 TTGAGCTCGT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 82 1.00
ACGTcount: A:0.28, C:0.34, G:0.16, T:0.22
Consensus pattern (20 bp):
TTCAGCTCACACGAGCTCAA
Found at i:38075370 original size:10 final size:10
Alignment explanation
Indices: 38075264--38075372 Score: 54
Period size: 10 Copynumber: 10.9 Consensus size: 10
38075254 AACTACNTGG
38075264 TTCAGCTC-A
1 TTCAGCTCAA
*
38075273 CTCGAGCTCAA
1 TTC-AGCTCAA
* *
38075284 GTCAACTC-A
1 TTCAGCTCAA
38075293 TTCGAGCTCAA
1 TTC-AGCTCAA
*
38075304 GTCAGCTCACA
1 TTCAGCTCA-A
38075315 --CGAGCTCAA
1 TTC-AGCTCAA
38075324 TTCAGCTCACA
1 TTCAGCTCA-A
38075335 --CGAGCTCAA
1 TTC-AGCTCAA
38075344 TTCAGCTCACA
1 TTCAGCTCA-A
38075355 --CGAGCTCAA
1 TTC-AGCTCAA
38075364 TTCAGCTCA
1 TTCAGCTCA
38075373 TTGAGCTCGT
Statistics
Matches: 78, Mismatches: 6, Indels: 31
0.68 0.05 0.27
Matches are distributed among these distances:
9 11 0.14
10 55 0.71
11 12 0.15
ACGTcount: A:0.28, C:0.34, G:0.16, T:0.22
Consensus pattern (10 bp):
TTCAGCTCAA
Found at i:38078992 original size:40 final size:39
Alignment explanation
Indices: 38078961--38079170 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
38078951 GGACTAAGAT
* *
38078961 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
38079001 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
38079041 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
38079081 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
38079121 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
38079160 CCGAAGGCATT
1 CCGAAGGCATT
38079171 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:38079124 original size:120 final size:120
Alignment explanation
Indices: 38078908--38079170 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
38078898 TTGAATGCTG
* *
38078908 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
38078972 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
38079028 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
38079091 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
38079147 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
38079171 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:38079190 original size:79 final size:80
Alignment explanation
Indices: 38078961--38079205 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
38078951 GGACTAAGAT
* * * * * * * ** *
38078961 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
38079024 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
38079041 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
38079106 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
38079121 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
38079185 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
38079199 CCGAAGG
1 CCGAAGG
38079206 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:38088474 original size:52 final size:50
Alignment explanation
Indices: 38088409--38088528 Score: 161
Period size: 50 Copynumber: 2.4 Consensus size: 50
38088399 ATGAACAAAT
* *
38088409 GAGTTAC-TCAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACAT-AATGCATGACATAA-TTAATGATGCAAAC-TTAACTAACATGA
** *
38088461 GAGTTACATAATGCATCTCATAATTCATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACATAATTAATGATGCAAACTTAACTAACATGA
38088511 GAGTTACATAATGCATGA
1 GAGTTACATAATGCATGA
38088529 ATTTATTAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
50 28 0.47
51 13 0.22
52 18 0.30
53 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (50 bp):
GAGTTACATAATGCATGACATAATTAATGATGCAAACTTAACTAACATGA
Found at i:38099436 original size:11 final size:12
Alignment explanation
Indices: 38099420--38099453 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
38099410 AAAAGTACAA
*
38099420 GAAAAATAGATT
1 GAAAAAGAGATT
38099432 GAAAAAGAGATT
1 GAAAAAGAGATT
38099444 GAAAAAGAGA
1 GAAAAAGAGA
38099454 AAGAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.15
Consensus pattern (12 bp):
GAAAAAGAGATT
Found at i:38101387 original size:24 final size:24
Alignment explanation
Indices: 38101360--38101434 Score: 104
Period size: 24 Copynumber: 3.2 Consensus size: 24
38101350 AATTTTAAAG
38101360 GATGTATAATGCTCTCCTTTAATT
1 GATGTATAATGCTCTCCTTTAATT
*
38101384 GATGTA-ACA-G--CTCCTTTAAAT
1 GATGTATA-ATGCTCTCCTTTAATT
38101405 GATGTATAATGCTCTCCTTTAATT
1 GATGTATAATGCTCTCCTTTAATT
38101429 GATGTA
1 GATGTA
38101435 ACAGCCCCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
21 17 0.39
22 2 0.05
23 2 0.05
24 23 0.52
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (24 bp):
GATGTATAATGCTCTCCTTTAATT
Found at i:38101399 original size:21 final size:21
Alignment explanation
Indices: 38101373--38101444 Score: 83
Period size: 21 Copynumber: 3.3 Consensus size: 21
38101363 GTATAATGCT
38101373 CTCCTTTAATTGATGTAACAG
1 CTCCTTTAATTGATGTAACAG
*
38101394 CTCCTTTAAATGATGTATA-ATG
1 CTCCTTTAATTGATGTA-ACA-G
38101416 CTCTCCTTTAATTGATGTAACAG
1 --CTCCTTTAATTGATGTAACAG
*
38101439 CCCCTT
1 CTCCTT
38101445 GTATGTAACT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
21 22 0.51
22 2 0.05
23 2 0.05
24 17 0.40
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.39
Consensus pattern (21 bp):
CTCCTTTAATTGATGTAACAG
Found at i:38101417 original size:45 final size:45
Alignment explanation
Indices: 38101353--38101444 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
38101343 GCCGCTGAAT
*
38101353 TTTAAAGGATGTATAATGCTCTCCTTTAATTGATGTAACAGCTCC
1 TTTAAAGGATGTATAATGCTCTCCTTTAATTGATGTAACAGCCCC
*
38101398 TTTAAATGATGTATAATGCTCTCCTTTAATTGATGTAACAGCCCC
1 TTTAAAGGATGTATAATGCTCTCCTTTAATTGATGTAACAGCCCC
38101443 TT
1 TT
38101445 GTATGTAACT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (45 bp):
TTTAAAGGATGTATAATGCTCTCCTTTAATTGATGTAACAGCCCC
Found at i:38101699 original size:40 final size:40
Alignment explanation
Indices: 38101655--38101740 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
38101645 GTTTAATAAA
**
38101655 AATAAAGTGTAACAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
*
38101695 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
38101735 AATAAA
1 AATAAA
38101741 ATTAAAGTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.30
Consensus pattern (40 bp):
AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
Found at i:38104008 original size:20 final size:19
Alignment explanation
Indices: 38103964--38104012 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 19
38103954 TTGTTCAATT
* *
38103964 TCAATCTCATTTTTCTTTT
1 TCAATTTCATTTTTCTTTC
38103983 TC--TTTCATTTTTCTTCTC
1 TCAATTTCATTTTTCTT-TC
38104001 TCAATTTCATTT
1 TCAATTTCATTT
38104013 CATGTTCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 12 0.48
18 3 0.12
19 2 0.08
20 8 0.32
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.63
Consensus pattern (19 bp):
TCAATTTCATTTTTCTTTC
Found at i:38105832 original size:24 final size:24
Alignment explanation
Indices: 38105775--38105835 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
38105765 GCTGCTAAAT
* *
38105775 TTTAAAGGATGAATAATGCTCTCC
1 TTTAAATGATGTATAATGCTCTCC
38105799 TTTAAATGATGTATAATGCTCTCC
1 TTTAAATGATGTATAATGCTCTCC
*
38105823 TTTAATTGATGTA
1 TTTAAATGATGTA
38105836 ACAGCCCCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (24 bp):
TTTAAATGATGTATAATGCTCTCC
Found at i:38106121 original size:40 final size:40
Alignment explanation
Indices: 38106065--38106148 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
38106055 GTTTAATAAA
* * *
38106065 AATAAATTCCAACAACTCAATTATTAACTAAGTTGAGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATAAGTTT
* *
38106105 AATAAAGTCCAGCAACTCGATTATTAACTAAGATAAGTTT
1 AATAAAGTCCAACAACTCAATTATTAACTAAGATAAGTTT
38106145 AATA
1 AATA
38106149 GAATTAAAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (40 bp):
AATAAAGTCCAACAACTCAATTATTAACTAAGATAAGTTT
Found at i:38106419 original size:21 final size:22
Alignment explanation
Indices: 38106393--38106449 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
38106383 AATAGTGGTG
*
38106393 GCGGTGAGATTAG-TTACTGTA
1 GCGGTGAGATTAGAATACTGTA
38106414 GCGGTGAGATT-GAATACTGTA
1 GCGGTGAGATTAGAATACTGTA
*
38106435 GCAGTGAGATTAGAA
1 GCGGTGAGATTAGAA
38106450 GCAATGGTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 1 0.03
21 28 0.88
22 3 0.09
ACGTcount: A:0.30, C:0.09, G:0.33, T:0.28
Consensus pattern (22 bp):
GCGGTGAGATTAGAATACTGTA
Found at i:38106694 original size:33 final size:32
Alignment explanation
Indices: 38106657--38106720 Score: 74
Period size: 33 Copynumber: 2.0 Consensus size: 32
38106647 AATGAATTAT
38106657 ATAATCAATTTAAATTATTTATTAGATAAAATG
1 ATAATCAATTTAAATTATTTA-TAGATAAAATG
* * * * *
38106690 ATAATTATTTTTAATTTTTTATAGTTAAAAT
1 ATAATCAATTTAAATTATTTATAGATAAAAT
38106721 TCTTTTATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
32 9 0.35
33 17 0.65
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (32 bp):
ATAATCAATTTAAATTATTTATAGATAAAATG
Found at i:38119139 original size:273 final size:273
Alignment explanation
Indices: 38118652--38119197 Score: 1011
Period size: 273 Copynumber: 2.0 Consensus size: 273
38118642 AGGGTTTGAG
*
38118652 GGTACCTCATTAGGAAGACTACCTTCATTCTCATTACTATGTTCATCTAAATCACCAAATCCCTC
1 GGTACCTCATTAGGAAGAATACCTTCATTCTCATTACTATGTTCATCTAAATCACCAAATCCCTC
*
38118717 ATTAGGTGTATCATCTCCCATAGGAACCCCACTTGGAAGAATACCAGACGAATGTGCCCATGCAT
66 ATTAGGTGTATCATCTCCCATAGGAACCCCACTTGGAAGAACACCAGACGAATGTGCCCATGCAT
*
38118782 TCTCTCCAGTAGCTACAATGCCCCCAAACATTTGCCACATTAACTCATTCAATCGTGGTTCAATT
131 TCTCTCCAGTAGCTACAATGCCACCAAACATTTGCCACATTAACTCATTCAATCGTGGTTCAATT
*
38118847 CCTTTCTTCTTAAATCCTTTAAAATCAGGATTTTCCTACATAAAATGCTAAATATTAAATGTTAT
196 CCTTTCTTCTTAAATCCTTTAAAATCAAGATTTTCCTACATAAAATGCTAAATATTAAATGTTAT
38118912 ACTAAGATTTTTA
261 ACTAAGATTTTTA
* *
38118925 GGTACCTCATTAGGAGGAATACCTTCATTCTCATTACTATGTTCATCTGAATCACCAAATCCCTC
1 GGTACCTCATTAGGAAGAATACCTTCATTCTCATTACTATGTTCATCTAAATCACCAAATCCCTC
38118990 ATTAGGTGTATCATCTCCCATAGGAACCCCACTTGGAAGAACACCAGACGAATGTGCCCATGCAT
66 ATTAGGTGTATCATCTCCCATAGGAACCCCACTTGGAAGAACACCAGACGAATGTGCCCATGCAT
38119055 TCTCTCCAGTAGCTACAATGCCACCAAACATTTGCCACATTAACTCATTCAATCGTGGTTCAATT
131 TCTCTCCAGTAGCTACAATGCCACCAAACATTTGCCACATTAACTCATTCAATCGTGGTTCAATT
* * *
38119120 CCTTTCTTCTTAAATCCTTTAAAATCAAGATTTTCCTACATAACATGTTAAATGTTAAATGTTAT
196 CCTTTCTTCTTAAATCCTTTAAAATCAAGATTTTCCTACATAAAATGCTAAATATTAAATGTTAT
38119185 ACTAAGATTTTTA
261 ACTAAGATTTTTA
38119198 TATTTGTAAA
Statistics
Matches: 264, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
273 264 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.33
Consensus pattern (273 bp):
GGTACCTCATTAGGAAGAATACCTTCATTCTCATTACTATGTTCATCTAAATCACCAAATCCCTC
ATTAGGTGTATCATCTCCCATAGGAACCCCACTTGGAAGAACACCAGACGAATGTGCCCATGCAT
TCTCTCCAGTAGCTACAATGCCACCAAACATTTGCCACATTAACTCATTCAATCGTGGTTCAATT
CCTTTCTTCTTAAATCCTTTAAAATCAAGATTTTCCTACATAAAATGCTAAATATTAAATGTTAT
ACTAAGATTTTTA
Found at i:38135382 original size:33 final size:33
Alignment explanation
Indices: 38135337--38135403 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
38135327 ATAGTTACTG
*
38135337 TTACTTAAGCCTAGAATTTCAAGAGTTTGTGCT
1 TTACTTAAGCCTAAAATTTCAAGAGTTTGTGCT
*
38135370 TTACTTAGGCCTAAAATTTCAAGAGTTTGTGCT
1 TTACTTAAGCCTAAAATTTCAAGAGTTTGTGCT
38135403 T
1 T
38135404 AGTGATTAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (33 bp):
TTACTTAAGCCTAAAATTTCAAGAGTTTGTGCT
Found at i:38137296 original size:10 final size:10
Alignment explanation
Indices: 38137281--38137329 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
38137271 TTGGGTTAAG
38137281 ATTGAGCTGA
1 ATTGAGCTGA
38137291 ATTGAGCTCGA
1 ATTGAGCT-GA
38137302 A-TGAGCTGA
1 ATTGAGCTGA
* *
38137311 CTTGAGCTCA
1 ATTGAGCTGA
*
38137321 AGTGAGCTG
1 ATTGAGCTG
38137330 GAAACGAGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 2 0.06
10 27 0.84
11 3 0.09
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:38137306 original size:20 final size:20
Alignment explanation
Indices: 38137283--38137329 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
38137273 GGGTTAAGAT
38137283 TGAGCTGAATTGAGCTCGAA-
1 TGAGCTGAATTGAGCTC-AAG
*
38137303 TGAGCTGACTTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
38137323 TGAGCTG
1 TGAGCTG
38137330 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:38139029 original size:12 final size:12
Alignment explanation
Indices: 38138996--38139076 Score: 53
Period size: 12 Copynumber: 6.8 Consensus size: 12
38138986 TTTCCACTCG
38138996 ATTTC-TTTTCA
1 ATTTCTTTTTCA
** *
38139007 AGCTCTCTTTCA
1 ATTTCTTTTTCA
38139019 ATTTCTTTTTCCA
1 ATTTCTTTTT-CA
*
38139032 CTCTTTCTTTTTC-
1 --ATTTCTTTTTCA
*
38139045 --TTCTCTTTCA
1 ATTTCTTTTTCA
38139055 ATTTCTTTTTCA
1 ATTTCTTTTTCA
*
38139067 ATCTCTTTTT
1 ATTTCTTTTT
38139077 GCTTTTCACT
Statistics
Matches: 53, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
9 8 0.15
11 3 0.06
12 30 0.57
13 2 0.04
14 1 0.02
15 9 0.17
ACGTcount: A:0.12, C:0.25, G:0.01, T:0.62
Consensus pattern (12 bp):
ATTTCTTTTTCA
Found at i:38139037 original size:21 final size:20
Alignment explanation
Indices: 38139011--38139066 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 20
38139001 TTTTCAAGCT
38139011 CTCTTTCAATTTCTTTTTCCA
1 CTCTTTCAATTTCTTTTT-CA
*
38139032 CTCTTTC--TTT-TTCTT--
1 CTCTTTCAATTTCTTTTTCA
38139047 CTCTTTCAATTTCTTTTTCA
1 CTCTTTCAATTTCTTTTTCA
38139067 ATCTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
15 7 0.25
17 3 0.11
18 8 0.29
19 3 0.11
21 7 0.25
ACGTcount: A:0.11, C:0.27, G:0.00, T:0.62
Consensus pattern (20 bp):
CTCTTTCAATTTCTTTTTCA
Found at i:38139129 original size:15 final size:15
Alignment explanation
Indices: 38139106--38139152 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
38139096 TTTTGAAATC
38139106 TCATTTTCATATT-TT
1 TCATTTTCAT-TTCTT
*
38139121 TCTTTTTCATTTCTT
1 TCATTTTCATTTCTT
38139136 TCATTTTCATTTTCTT
1 TCATTTTCA-TTTCTT
38139152 T
1 T
38139153 ATTCTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 2 0.07
15 19 0.68
16 7 0.25
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (15 bp):
TCATTTTCATTTCTT
Found at i:38140210 original size:10 final size:10
Alignment explanation
Indices: 38140195--38140225 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
38140185 AGACTTTCAC
38140195 TTCTTTTTTT
1 TTCTTTTTTT
38140205 TTC-TTTTTT
1 TTCTTTTTTT
38140214 TTCTTTTTTT
1 TTCTTTTTTT
38140224 TT
1 TT
38140226 GCTCACTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:38140213 original size:8 final size:9
Alignment explanation
Indices: 38140199--38140224 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
38140189 TTTCACTTCT
38140199 TTTTTTTTC
1 TTTTTTTTC
38140208 TTTTTTTTC
1 TTTTTTTTC
38140217 TTTTTTTT
1 TTTTTTTT
38140225 TGCTCACTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:38140252 original size:11 final size:11
Alignment explanation
Indices: 38140236--38140272 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
38140226 GCTCACTTCT
38140236 TTTTTTTTGAA
1 TTTTTTTTGAA
38140247 TTTTTTTTGAA
1 TTTTTTTTGAA
38140258 TTTTTTTTGAA
1 TTTTTTTTGAA
38140269 TTTT
1 TTTT
38140273 GATTTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:38141502 original size:10 final size:10
Alignment explanation
Indices: 38141487--38141535 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
38141477 TTGGGTTAAG
38141487 ATTGAGCTGA
1 ATTGAGCTGA
38141497 ATTGAGCTCGA
1 ATTGAGCT-GA
38141508 A-TGAGCTGA
1 ATTGAGCTGA
* *
38141517 CTTGAGCTCA
1 ATTGAGCTGA
*
38141527 AGTGAGCTG
1 ATTGAGCTG
38141536 GAAACGAGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 2 0.06
10 27 0.84
11 3 0.09
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:38141512 original size:20 final size:20
Alignment explanation
Indices: 38141489--38141535 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
38141479 GGGTTAAGAT
38141489 TGAGCTGAATTGAGCTCGAA-
1 TGAGCTGAATTGAGCTC-AAG
*
38141509 TGAGCTGACTTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
38141529 TGAGCTG
1 TGAGCTG
38141536 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:38142928 original size:21 final size:21
Alignment explanation
Indices: 38142902--38142944 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
38142892 TGAGAAGGAA
*
38142902 GTTGCT-ACAGAAGAGGAAGTT
1 GTTGCTGA-AGAAGAAGAAGTT
38142923 GTTGCTGAAGAAGAAGAAGTT
1 GTTGCTGAAGAAGAAGAAGTT
38142944 G
1 G
38142945 CTGAAGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (21 bp):
GTTGCTGAAGAAGAAGAAGTT
Found at i:38142932 original size:18 final size:18
Alignment explanation
Indices: 38142897--38142951 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
38142887 GCTGTTGAGA
* * *
38142897 AGGAAGTTGCTACAGAAG
1 AGGAAGTTGTTGCTGAAG
38142915 AGGAAGTTGTTGCTGAAG
1 AGGAAGTTGTTGCTGAAG
* **
38142933 AAGAAGAAGTTGCTGAAG
1 AGGAAGTTGTTGCTGAAG
38142951 A
1 A
38142952 TGAAAAGGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.38, C:0.07, G:0.35, T:0.20
Consensus pattern (18 bp):
AGGAAGTTGTTGCTGAAG
Found at i:38146481 original size:17 final size:18
Alignment explanation
Indices: 38146449--38146485 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
38146439 TGTTGAGCTG
38146449 AACTTAATTAAATTAACT
1 AACTTAATTAAATTAACT
*
38146467 AACTT-ATTTAATTAACT
1 AACTTAATTAAATTAACT
38146484 AA
1 AA
38146486 GTTTATTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41
Consensus pattern (18 bp):
AACTTAATTAAATTAACT
Found at i:38148547 original size:21 final size:21
Alignment explanation
Indices: 38148502--38148564 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
38148492 TTTGAACCAT
* *
38148502 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
38148524 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
38148545 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
38148565 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:38154172 original size:20 final size:21
Alignment explanation
Indices: 38154147--38154186 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
38154137 TGAAAAAGAG
38154147 AAAGAAAAGAAAAA-TGAGAA
1 AAAGAAAAGAAAAAGTGAGAA
*
38154167 AAAGAAAGGAAAAAGTGAGA
1 AAAGAAAAGAAAAAGTGAGA
38154187 GAGTGGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.05
Consensus pattern (21 bp):
AAAGAAAAGAAAAAGTGAGAA
Found at i:38177039 original size:14 final size:14
Alignment explanation
Indices: 38177020--38177049 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
38177010 AACTATTGAG
38177020 ATGTGATGGAAGAA
1 ATGTGATGGAAGAA
38177034 ATGTGATGGAAGAA
1 ATGTGATGGAAGAA
38177048 AT
1 AT
38177050 TTATGAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.23
Consensus pattern (14 bp):
ATGTGATGGAAGAA
Found at i:38180140 original size:44 final size:44
Alignment explanation
Indices: 38180077--38180161 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
38180067 GTATGAAAAG
38180077 GAAAATAATGGTAAGTGTTGAAATGAACTATGTATTGTAATTAT
1 GAAAATAATGGTAAGTGTTGAAATGAACTATGTATTGTAATTAT
*
38180121 GAAAATAATGGTAAGTGTTGAAATGAACTATGTCTTGTAAT
1 GAAAATAATGGTAAGTGTTGAAATGAACTATGTATTGTAAT
38180162 GATGCGATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (44 bp):
GAAAATAATGGTAAGTGTTGAAATGAACTATGTATTGTAATTAT
Found at i:38182684 original size:9 final size:9
Alignment explanation
Indices: 38182652--38182683 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
38182642 TATTTTAATT
38182652 TTTTTTGAA
1 TTTTTTGAA
38182661 TTTTTTGAA
1 TTTTTTGAA
38182670 TTTTTTG-A
1 TTTTTTGAA
38182678 TTTTTT
1 TTTTTT
38182684 TTTGATCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (9 bp):
TTTTTTGAA
Found at i:38187047 original size:22 final size:24
Alignment explanation
Indices: 38187004--38187047 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
38186994 CATAGTTATA
*
38187004 ATAGTATAAAATAACAATATATTC
1 ATAGAATAAAATAACAATATATTC
38187028 ATAGAATAAAA-AA-AATATAT
1 ATAGAATAAAATAACAATATAT
38187048 AGATTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 2 0.11
24 10 0.53
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
ATAGAATAAAATAACAATATATTC
Found at i:38195014 original size:14 final size:14
Alignment explanation
Indices: 38194995--38195023 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
38194985 GTTATAATAT
38194995 ATGAGAAATGGTTG
1 ATGAGAAATGGTTG
38195009 ATGAGAAATGGTTG
1 ATGAGAAATGGTTG
38195023 A
1 A
38195024 ATATGAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.28
Consensus pattern (14 bp):
ATGAGAAATGGTTG
Found at i:38195351 original size:51 final size:50
Alignment explanation
Indices: 38195277--38195461 Score: 221
Period size: 51 Copynumber: 3.7 Consensus size: 50
38195267 CTATAAACAT
* * * *
38195277 GTGTGTAGTACTAAGTGCAGGCTACTCCGTGTATC-GATAGATAATGGTCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-AGAT-TTGGTCAC
* *
38195328 ATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAAGGATTTGGTCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA-GATTTGGTCAC
* * *
38195379 GTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGAA-AGTTTGATCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAGA-TTTGGTCAC
* *
38195429 GTGTGTAGTACTATGTGAAGGCTTCTACGTGTA
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTA
38195462 TTGAATGATA
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 38 0.32
51 73 0.62
52 5 0.04
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAGATTTGGTCAC
Found at i:38195461 original size:101 final size:102
Alignment explanation
Indices: 38195277--38195461 Score: 248
Period size: 101 Copynumber: 1.8 Consensus size: 102
38195267 CTATAAACAT
* * * * *
38195277 GTGTGTAGTACTAAGTGCAGGCTACTCCGTGTATCGATAGATAATGGTCACATGTGTAGTACTAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGAACCGAAAGATAATGATCACATGTGTAGTACTAT
* *
38195342 GTGCAGGCTACTATGTGTACCAGAAGGATTTGGTCAC
66 GTGAAGGCTACTACGTGTACCAGAAGGATTTGGTCAC
* * *
38195379 GTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGAAAG-T-TTGATCACGTGTGTAGTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGAACC-GAAAGATAATGATCACATGTGTAGTACTA
*
38195442 TGTGAAGGCTTCTACGTGTA
65 TGTGAAGGCTACTACGTGTA
38195462 TTGAATGATA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
101 35 0.49
102 32 0.45
103 4 0.06
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (102 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGAACCGAAAGATAATGATCACATGTGTAGTACTAT
GTGAAGGCTACTACGTGTACCAGAAGGATTTGGTCAC
Found at i:38220579 original size:21 final size:21
Alignment explanation
Indices: 38220554--38220604 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
38220544 ATTATTGAGA
*
38220554 AGGAAGTTGTTGCTACAGAAG
1 AGGAAGTTGTTGCTAAAGAAG
38220575 AGGAAGTTGTTGCTAAAGAAG
1 AGGAAGTTGTTGCTAAAGAAG
*
38220596 AAGAAGTTG
1 AGGAAGTTG
38220605 CCGAAGATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.24
Consensus pattern (21 bp):
AGGAAGTTGTTGCTAAAGAAG
Found at i:38221225 original size:4 final size:4
Alignment explanation
Indices: 38221216--38221243 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
38221206 GTTAAATAAG
38221216 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
38221244 GTAAAACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TTAA
Found at i:38222095 original size:30 final size:30
Alignment explanation
Indices: 38222060--38222132 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
38222050 CTATCAATTG
* *
38222060 TGAAAAGGGATGGTGACGACCATCGAATAA
1 TGAAAAGGGATGGTAACGACCATCAAATAA
*
38222090 TGAAAAGGGATGGTAACGACCATCAAATTA
1 TGAAAAGGGATGGTAACGACCATCAAATAA
*
38222120 TGAAACGGGATGG
1 TGAAAAGGGATGG
38222133 ATTCGGCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.40, C:0.12, G:0.30, T:0.18
Consensus pattern (30 bp):
TGAAAAGGGATGGTAACGACCATCAAATAA
Found at i:38224487 original size:17 final size:17
Alignment explanation
Indices: 38224454--38224487 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
38224444 GATAAGTACA
* *
38224454 AATTGTCATTGCGTTTT
1 AATTGTCATTACATTTT
38224471 AATTGTCATTACATTTT
1 AATTGTCATTACATTTT
38224488 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
AATTGTCATTACATTTT
Found at i:38226175 original size:21 final size:21
Alignment explanation
Indices: 38226133--38226175 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
38226123 CACACTCAGA
* *
38226133 TTAATTGAGTTATTAATGAAC
1 TTAATTGAGTAATTAATAAAC
38226154 TTAATTGAGCTAATTAA-AAAC
1 TTAATTGAG-TAATTAATAAAC
38226175 T
1 T
38226176 AAAAGACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.40
Consensus pattern (21 bp):
TTAATTGAGTAATTAATAAAC
Found at i:38226827 original size:19 final size:19
Alignment explanation
Indices: 38226795--38226833 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
38226785 AAAAATACTT
*
38226795 AGACATATTAAATAATTAA
1 AGACACATTAAATAATTAA
* *
38226814 AGACACATTTAATACTTAA
1 AGACACATTAAATAATTAA
38226833 A
1 A
38226834 CTAAATATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (19 bp):
AGACACATTAAATAATTAA
Found at i:38229715 original size:12 final size:12
Alignment explanation
Indices: 38229698--38229723 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38229688 CTGTCATAGG
38229698 TGCAGTGGTCGA
1 TGCAGTGGTCGA
38229710 TGCAGTGGTCGA
1 TGCAGTGGTCGA
38229722 TG
1 TG
38229724 TAATGGTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.42, T:0.27
Consensus pattern (12 bp):
TGCAGTGGTCGA
Found at i:38233459 original size:41 final size:38
Alignment explanation
Indices: 38233355--38233505 Score: 128
Period size: 38 Copynumber: 3.9 Consensus size: 38
38233345 TAAAGAGATG
** * *
38233355 TATTAAAGATG-TCTAAACAATGAAATATTTAAAACAT-A
1 TATTAAAGATGTTC-AAATTATGACATAATTAAAAC-TCA
* * * *
38233393 TATTTAAGATGTCCTAAACTATGACATAATTGAAAAAAAC-CT
1 TATTAAAGATGTTC-AAATTATGACATAATT----AAAACTCA
*
38233435 TATTAAAGATGTTCAAATTATGACAAAATTAAAACTCA
1 TATTAAAGATGTTCAAATTATGACATAATTAAAACTCA
*
38233473 TATTAATGATGTTCAAATTATGACATAATTAAA
1 TATTAAAGATGTTCAAATTATGACATAATTAAA
38233506 GACTTAAACT
Statistics
Matches: 93, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
37 5 0.05
38 42 0.45
39 15 0.16
41 14 0.15
42 12 0.13
43 5 0.05
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (38 bp):
TATTAAAGATGTTCAAATTATGACATAATTAAAACTCA
Found at i:38236903 original size:44 final size:43
Alignment explanation
Indices: 38236835--38237005 Score: 127
Period size: 43 Copynumber: 4.0 Consensus size: 43
38236825 TAGGATTCTA
* * * *
38236835 ATATGTGATTTTGTGTAAGGCCATGTCTAGGACGTTGGCATTG
1 ATATATGATTTCGTGTAAGACCATGTCTAGGACGTTGGCATTC
* * *
38236878 ATTTGA-GATTTACGTGTAAGACCATGTCTGGGACATTGGCA-TC
1 ATAT-ATGATTT-CGTGTAAGACCATGTCTAGGACGTTGGCATTC
* *
38236921 ATATATGATTTCGTGTAAGACCTTATCTAGGACAG-TGGCA-TC
1 ATATATGATTTCGTGTAAGACCATGTCTAGGAC-GTTGGCATTC
* * * * * *
38236963 GGTATTTGATTACATGAAAGACC-TCGTCTAGGATGTTGGCATT
1 -ATATATGATTTCGTGTAAGACCAT-GTCTAGGACGTTGGCATT
38237006 GTACGAGCTT
Statistics
Matches: 101, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
42 29 0.29
43 46 0.46
44 26 0.26
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
ATATATGATTTCGTGTAAGACCATGTCTAGGACGTTGGCATTC
Found at i:38236954 original size:42 final size:42
Alignment explanation
Indices: 38236835--38236962 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 42
38236825 TAGGATTCTA
* * * * *
38236835 ATATGTGATTTTGTGTAAGGCCATGTCTAGGACGTTGGCATTG
1 ATATATGATTTCGTGTAAGACCATGTCTAGGACATTGGCA-TC
* *
38236878 ATTTGA-GATTTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 ATAT-ATGATTT-CGTGTAAGACCATGTCTAGGACATTGGCATC
* * *
38236921 ATATATGATTTCGTGTAAGACCTTATCTAGGACAGTGGCATC
1 ATATATGATTTCGTGTAAGACCATGTCTAGGACATTGGCATC
38236963 GGTATTTGAT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 28 0.40
43 17 0.24
44 25 0.36
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (42 bp):
ATATATGATTTCGTGTAAGACCATGTCTAGGACATTGGCATC
Found at i:38240133 original size:17 final size:16
Alignment explanation
Indices: 38240102--38240143 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
38240092 CTTTTTGCTC
*
38240102 TTTTTTTATCTATTT-
1 TTTTTTTCTCTATTTA
38240117 TTCTTTTTCTCTCATTTA
1 TT-TTTTTCTCT-ATTTA
38240135 TTTTTTTCT
1 TTTTTTTCT
38240144 TTTCTCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 2 0.09
16 8 0.35
17 11 0.48
18 2 0.09
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTTCTCTATTTA
Found at i:38240149 original size:20 final size:22
Alignment explanation
Indices: 38240112--38240160 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
38240102 TTTTTTTATC
38240112 TATTTTTCTTTTTCTCTC-ATT
1 TATTTTTCTTTTTCTCTCAATT
38240133 TATTTTT-TTCTTT-TCTCAATT
1 TATTTTTCTT-TTTCTCTCAATT
38240154 TCATTTT
1 T-ATTTT
38240161 GGATTCGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.71
Consensus pattern (22 bp):
TATTTTTCTTTTTCTCTCAATT
Found at i:38240154 original size:21 final size:24
Alignment explanation
Indices: 38240114--38240160 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
38240104 TTTTTATCTA
*
38240114 TTTTTCTTTTTCTCTCATTT-ATT
1 TTTTTCTTTTTCTCTAATTTCATT
38240137 TTTTTC-TTTTCTC-AATTTCATT
1 TTTTTCTTTTTCTCTAATTTCATT
38240159 TT
1 TT
38240161 GGATTCGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 12 0.55
23 6 0.27
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTTCTTTTTCTCTAATTTCATT
Found at i:38241995 original size:28 final size:28
Alignment explanation
Indices: 38241964--38242019 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
38241954 TCTTTAACTA
38241964 AATGTTCTCCTCTCTCTCTGTTTTGATT
1 AATGTTCTCCTCTCTCTCTGTTTTGATT
38241992 AATGTTCTCCTCTCTCTCTGTTTTGATT
1 AATGTTCTCCTCTCTCTCTGTTTTGATT
38242020 CTTAGTTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.11, C:0.25, G:0.11, T:0.54
Consensus pattern (28 bp):
AATGTTCTCCTCTCTCTCTGTTTTGATT
Found at i:38242720 original size:27 final size:27
Alignment explanation
Indices: 38242680--38242940 Score: 328
Period size: 27 Copynumber: 9.7 Consensus size: 27
38242670 AATGGGCCTC
* *
38242680 TAAAATAACTGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
38242707 TAAAATGACCGAAATAACCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
**
38242734 TAAAATTACTAAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
38242761 TAAAATTACCGAAATACCTTTGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* * * *
38242788 AAAAATTATCAAAATACTCCT-AATGGG
1 TAAAATTACCGAAATAC-CCTCGATGGG
38242815 -AAAATTACCGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
38242841 TAAAATTATCAAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
38242868 TAAAATTATCGAAATACCCTTGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
38242895 TAATATTACTGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
*
38242922 TAAAATTACTGAAATACCC
1 TAAAATTACCGAAATACCC
38242941 CTAGGACATG
Statistics
Matches: 203, Mismatches: 28, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
25 3 0.01
26 19 0.09
27 179 0.88
28 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.25
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATGGG
Found at i:38242868 original size:107 final size:108
Alignment explanation
Indices: 38242681--38242940 Score: 357
Period size: 107 Copynumber: 2.4 Consensus size: 108
38242671 ATGGGCCTCT
* * * * *
38242681 AAAATAACTGAAATACCCTCGATGGGTAAAATGACCGAAATAACCTCGATGGGTAAAATTACTAA
1 AAAATTACTAAAATACCCTCAATGGGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAA
*
38242746 AATACCCTCGATGGGTAAAATTACCGAAATACCTTTGATGGGA
66 AATACCCTCGATGGGTAAAATTACCGAAATACCCTTGATGGGA
38242789 AAAATTA-TCAAAATACTCCT-AATGGG-AAAATTACCGAAATACCCTCGATGGGTAAAATTA-T
1 AAAATTACT-AAAATAC-CCTCAATGGGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACT
* *
38242850 CAAAATACCCTCGATGGGTAAAATTATCGAAATACCCTTGATGGGT
64 -AAAATACCCTCGATGGGTAAAATTACCGAAATACCCTTGATGGGA
* * * *
38242896 AATATTACTGAAATACCCTCGATGGGTAAAATTACTGAAATACCC
1 AAAATTACTAAAATACCCTCAATGGGTAAAATTACCGAAATACCC
38242941 CTAGGACATG
Statistics
Matches: 134, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
106 4 0.03
107 92 0.69
108 35 0.26
109 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (108 bp):
AAAATTACTAAAATACCCTCAATGGGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACTAA
AATACCCTCGATGGGTAAAATTACCGAAATACCCTTGATGGGA
Found at i:38242937 original size:134 final size:134
Alignment explanation
Indices: 38242681--38242943 Score: 359
Period size: 134 Copynumber: 2.0 Consensus size: 134
38242671 ATGGGCCTCT
* *
38242681 AAAATAACTGAAATACCCTCGATGGGTAAAATGACCGAAATAACCTCGATGGGTAAAATTACTAA
1 AAAATAACCGAAATACCCTCGATGGGTAAAATGACCAAAATAACCTCGATGGGTAAAATTACTAA
* * *
38242746 AATACCCTCGATGGGTAAAATTACCGAAATACCTTTGATGGGAAAAATTATCAAAATACTCCTAA
66 AATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGGAAAAATTATCAAAATACCCCTAA
38242811 TGGG
131 TGGG
* * * * *
38242815 AAAATTACCGAAATACCCTCGATGGGTAAAATTATCAAAATACCCTCGATGGGTAAAATTA-TCG
1 AAAATAACCGAAATACCCTCGATGGGTAAAATGACCAAAATAACCTCGATGGGTAAAATTACT-A
* * * * *
38242879 AAATACCCTTGATGGGTAATATTACTGAAATACCCTCGATGGGTAAAATTA-CTGAAATACCCCT
65 AAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGGAAAAATTATC-AAAATACCCCT
38242943 A
129 A
38242944 GGACATGAAA
Statistics
Matches: 112, Mismatches: 15, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
133 2 0.02
134 110 0.98
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.25
Consensus pattern (134 bp):
AAAATAACCGAAATACCCTCGATGGGTAAAATGACCAAAATAACCTCGATGGGTAAAATTACTAA
AATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGGAAAAATTATCAAAATACCCCTAA
TGGG
Found at i:38243341 original size:30 final size:30
Alignment explanation
Indices: 38243307--38243390 Score: 132
Period size: 30 Copynumber: 2.8 Consensus size: 30
38243297 TGCATTTGCA
38243307 CTGTTACTGTATTGGGCTAAGGCCCACACT
1 CTGTTACTGTATTGGGCTAAGGCCCACACT
* *
38243337 CTGTTACAGTATTGGGCTGAGGCCCACACT
1 CTGTTACTGTATTGGGCTAAGGCCCACACT
* *
38243367 CTGTTACTGCATTGGGCTATGGCC
1 CTGTTACTGTATTGGGCTAAGGCC
38243391 GATACATTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.30
Consensus pattern (30 bp):
CTGTTACTGTATTGGGCTAAGGCCCACACT
Done.