Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 124 of 126
Found at i:38582683 original size:68 final size:70
Alignment explanation
Indices: 38582532--38582686 Score: 163
Period size: 68 Copynumber: 2.2 Consensus size: 70
38582522 TTAAATTTAA
* *
38582532 TATTAAATATTATTAAAATAATAAAATATTTATCTACAAGATAAACATTAAATTAAATTTAATAT
1 TATTAAATAATATTAAAATAATAAAATATCTATCTA-AAGATAAACATTAAATTAAATTTAATAT
*
38582597 TAAGAT
65 TAAAAT
* ** ** * **
38582603 AACCATTTTAATATTAAATTAATAAAATA-CTAT-T-AAGATATGCATTAAATTAAATTTAATAT
1 TATTA-AATAATATTAAAATAATAAAATATCTATCTAAAGATAAACATTAAATTAAATTTAATAT
38582665 TAAAAT
65 TAAAAT
38582671 TATTAAGATAATATTA
1 TATTAA-ATAATATTA
38582687 TTTTTGGAAT
Statistics
Matches: 66, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
68 41 0.62
70 1 0.02
71 5 0.08
72 19 0.29
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (70 bp):
TATTAAATAATATTAAAATAATAAAATATCTATCTAAAGATAAACATTAAATTAAATTTAATATT
AAAAT
Found at i:38584575 original size:43 final size:43
Alignment explanation
Indices: 38584406--38584576 Score: 145
Period size: 43 Copynumber: 4.0 Consensus size: 43
38584396 ATAAGATTCT
* * * *
38584406 GATATGTGATTTCGTGTAAGACCACGTTTGGGACGTTGGCATC
1 GATATTTGATTACGTGTAAGACCTCGTCTGGGACGTTGGCATC
* * *
38584449 GAT-TTGAGATTTACGTGTAAGACCAT-GTCTGGGACATTGGCACC
1 GATATT-TGA-TTACGTGTAAGACC-TCGTCTGGGACGTTGGCATC
* ** * *
38584493 G-TATATGATTTTGTGTAATACC-CTGTCTGGGATAG-TGGCATC
1 GATATTTGATTACGTGTAAGACCTC-GTCTGGGA-CGTTGGCATC
*
38584535 GATATTTGATTACATGTAAGACCTCGTCTGGGACGTTGGCAT
1 GATATTTGATTACGTGTAAGACCTCGTCTGGGACGTTGGCAT
38584577 TGTTCGAGCT
Statistics
Matches: 97, Mismatches: 21, Indels: 20
0.70 0.15 0.14
Matches are distributed among these distances:
42 28 0.29
43 38 0.39
44 31 0.32
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
GATATTTGATTACGTGTAAGACCTCGTCTGGGACGTTGGCATC
Found at i:38585148 original size:2 final size:2
Alignment explanation
Indices: 38585143--38585174 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
38585133 GGTATATATA
38585143 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
38585175 GTGAGATTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:38592656 original size:23 final size:23
Alignment explanation
Indices: 38592613--38592661 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
38592603 GAGACGTGGC
* *
38592613 ATCGCGTCGTCGAGACAAGGGGT
1 ATCGCGTCATCGAGACAAGGGCT
**
38592636 ATCGCGTCATCGAGATGAGGGCT
1 ATCGCGTCATCGAGACAAGGGCT
38592659 ATC
1 ATC
38592662 TTCTCGTCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.35, T:0.20
Consensus pattern (23 bp):
ATCGCGTCATCGAGACAAGGGCT
Found at i:38593112 original size:19 final size:19
Alignment explanation
Indices: 38593084--38593120 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
38593074 ATATATTAAA
*
38593084 AAATATTTTTATAATTTTT
1 AAATAATTTTATAATTTTT
*
38593103 AAATAATTTTATGATTTT
1 AAATAATTTTATAATTTT
38593121 ATTTTTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
AAATAATTTTATAATTTTT
Found at i:38593709 original size:64 final size:64
Alignment explanation
Indices: 38593426--38593679 Score: 508
Period size: 64 Copynumber: 4.0 Consensus size: 64
38593416 TAAACTTTAT
38593426 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACCAA
1 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACCAA
38593490 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACCAA
1 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACCAA
38593554 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACCAA
1 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACCAA
38593618 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACC
1 TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACC
38593680 TCATAACAAT
Statistics
Matches: 190, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 190 1.00
ACGTcount: A:0.43, C:0.13, G:0.05, T:0.39
Consensus pattern (64 bp):
TAAACCTCCATTTGTTAGTGTAATTAAACTTTAAAAAAAATTATTAACTTTATTAATTAACCAA
Found at i:38595924 original size:20 final size:20
Alignment explanation
Indices: 38595899--38595951 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
38595889 ACCAATTTAT
*
38595899 AGACAAGCCACCAG-ATTCAC
1 AGACAAGCTACCAGAATT-AC
*
38595919 AGACAAGCTACCAGAATTGC
1 AGACAAGCTACCAGAATTAC
38595939 AGACAAGCTACCA
1 AGACAAGCTACCA
38595952 TAAATGTGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 27 0.90
21 3 0.10
ACGTcount: A:0.42, C:0.30, G:0.17, T:0.11
Consensus pattern (20 bp):
AGACAAGCTACCAGAATTAC
Found at i:38596615 original size:13 final size:13
Alignment explanation
Indices: 38596597--38596624 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
38596587 TTGAATTTAA
38596597 AATACACGAATTC
1 AATACACGAATTC
38596610 AATACACGAATTC
1 AATACACGAATTC
38596623 AA
1 AA
38596625 ACTTATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.21
Consensus pattern (13 bp):
AATACACGAATTC
Found at i:38599381 original size:14 final size:14
Alignment explanation
Indices: 38599362--38599388 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38599352 TTTGGAAATT
38599362 AATTAATTTATTAA
1 AATTAATTTATTAA
38599376 AATTAATTTATTA
1 AATTAATTTATTA
38599389 TGTTTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
AATTAATTTATTAA
Found at i:38603085 original size:17 final size:17
Alignment explanation
Indices: 38603063--38603095 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38603053 ACTGCAGGGG
*
38603063 TCACACGGTCATGTGAA
1 TCACACGGTCAAGTGAA
38603080 TCACACGGTCAAGTGA
1 TCACACGGTCAAGTGA
38603096 CACGCTCGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.21
Consensus pattern (17 bp):
TCACACGGTCAAGTGAA
Found at i:38604484 original size:25 final size:25
Alignment explanation
Indices: 38604453--38604537 Score: 116
Period size: 25 Copynumber: 3.4 Consensus size: 25
38604443 GTTATAAACA
*
38604453 GTAAGCTCATCCGAGCTGAATAACG
1 GTAAGCTCATCCGAGCTGAATAATG
* *
38604478 GTAAGCTCCTCCGAGATGAATAATG
1 GTAAGCTCATCCGAGCTGAATAATG
* * *
38604503 GTAAGCTCATGCGAGCTGAGTATTG
1 GTAAGCTCATCCGAGCTGAATAATG
38604528 GTAAGCTCAT
1 GTAAGCTCAT
38604538 TTGTATCCTA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (25 bp):
GTAAGCTCATCCGAGCTGAATAATG
Found at i:38606227 original size:21 final size:21
Alignment explanation
Indices: 38606177--38606227 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
38606167 TAGATAGTTA
*
38606177 TTTTATTTTTGTATATTGTTG
1 TTTTATTTTTGTAAATTGTTG
*
38606198 TTTTCTTTTTGTGAAATT-TT-
1 TTTTATTTTTGT-AAATTGTTG
38606218 TATTTATTTT
1 T-TTTATTTT
38606228 CCTTGTTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.16, C:0.02, G:0.10, T:0.73
Consensus pattern (21 bp):
TTTTATTTTTGTAAATTGTTG
Found at i:38613824 original size:44 final size:43
Alignment explanation
Indices: 38613748--38613847 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 43
38613738 CGATATGTAA
* * * * * * *
38613748 TTACGTGTAAGAACACGTCTGGGACGTTGGCATCGATTTGTGAT
1 TTACGTGTAAGACCACGTCTAGGACATCGGCATCG-TATATGAG
* *
38613792 TTACGTGTAAGACCATGTCTAGGATATCGGCATCGTATATGAG
1 TTACGTGTAAGACCACGTCTAGGACATCGGCATCGTATATGAG
38613835 TT-CGTGTAAGACC
1 TTACGTGTAAGACC
38613848 CTTTCGGGGA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 11 0.23
43 7 0.15
44 29 0.62
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
TTACGTGTAAGACCACGTCTAGGACATCGGCATCGTATATGAG
Found at i:38618569 original size:20 final size:20
Alignment explanation
Indices: 38618546--38618602 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
38618536 GTGTATAGAA
38618546 AGGCACCGAAGTGCAAACAG
1 AGGCACCGAAGTGCAAACAG
38618566 AGGCACCGAAGTGCAAACAG
1 AGGCACCGAAGTGCAAACAG
* *
38618586 AGGCACTGAAGTACAAA
1 AGGCACCGAAGTGCAAA
38618603 TCCCGTACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.42, C:0.23, G:0.28, T:0.07
Consensus pattern (20 bp):
AGGCACCGAAGTGCAAACAG
Found at i:38621995 original size:232 final size:232
Alignment explanation
Indices: 38621589--38622056 Score: 900
Period size: 232 Copynumber: 2.0 Consensus size: 232
38621579 TTCTATAAAT
*
38621589 AAACAATAAATAAGACTTCTTATTTATATGAATAACTAAATAAGTAGGACAAAGTTCTTACAATC
1 AAACAATAAATAAGACTTCTTATTTATATGAATAACTAAATAAGTAGGACAAAGTTCTTACAATA
* *
38621654 ATTTCATTTTACTAGATATATAAATCAAATAAATCCCGAACACGAATTATTTTTAAATTCACTTA
66 ATTGCATTTTACTAGATATATAAATCAAATAAATCCCGAACACGAATTATTTTTAAATACACTTA
38621719 TTCTAACCCTGAGGCAGCCTTGAAAGGTTCCCTTCTATATGGATGGTACTGTAACTTTAACTTCC
131 TTCTAACCCTGAGGCAGCCTTGAAAGGTTCCCTTCTATATGGATGGTACTGTAACTTTAACTTCC
38621784 ACTAGGGTTCCGTGAGGTTTGGCTTGGTCCCCTACCA
196 ACTAGGGTTCCGTGAGGTTTGGCTTGGTCCCCTACCA
38621821 AAACAATAAATAAGACTTCTTATTTATATGAATAACTAAATAAGTAGGACAAAGTTCTTACAATA
1 AAACAATAAATAAGACTTCTTATTTATATGAATAACTAAATAAGTAGGACAAAGTTCTTACAATA
38621886 ATTGCATTTTACTAGATATATAAATCAAATAAATCCCGAACACGAATTATTTTTAAATACACTTA
66 ATTGCATTTTACTAGATATATAAATCAAATAAATCCCGAACACGAATTATTTTTAAATACACTTA
38621951 TTCTAACCCTGAGGCAGCCTTGAAAGGTTCCCTTCTATATGGATGGTACTGTAACTTTAACTTCC
131 TTCTAACCCTGAGGCAGCCTTGAAAGGTTCCCTTCTATATGGATGGTACTGTAACTTTAACTTCC
*
38622016 ACTAGGGTTCTGTGAGGTTTGGCTTGGTCCCCTACCA
196 ACTAGGGTTCCGTGAGGTTTGGCTTGGTCCCCTACCA
38622053 AAAC
1 AAAC
38622057 TCCTATTTCA
Statistics
Matches: 232, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
232 232 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (232 bp):
AAACAATAAATAAGACTTCTTATTTATATGAATAACTAAATAAGTAGGACAAAGTTCTTACAATA
ATTGCATTTTACTAGATATATAAATCAAATAAATCCCGAACACGAATTATTTTTAAATACACTTA
TTCTAACCCTGAGGCAGCCTTGAAAGGTTCCCTTCTATATGGATGGTACTGTAACTTTAACTTCC
ACTAGGGTTCCGTGAGGTTTGGCTTGGTCCCCTACCA
Found at i:38653986 original size:22 final size:22
Alignment explanation
Indices: 38653959--38654010 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
38653949 GCTAGAAAAC
38653959 AATTTTGAA-CAAAATTGTTTTT
1 AATTTT-AATCAAAATTGTTTTT
*
38653981 AATTTTAATCCAAATTGTTTTT
1 AATTTTAATCAAAATTGTTTTT
*
38654003 -TTTTTAAT
1 AATTTTAAT
38654011 TCTATTTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (22 bp):
AATTTTAATCAAAATTGTTTTT
Found at i:38654007 original size:21 final size:21
Alignment explanation
Indices: 38653970--38654026 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
38653960 ATTTTGAACA
*
38653970 AAATTGTTTTTAATTTTAATCC
1 AAATTGTTTTT-TTTTTAATCC
*
38653992 AAATTGTTTTTTTTTTAATTC
1 AAATTGTTTTTTTTTTAATCC
* *
38654013 TATTTGTTTTTTTT
1 AAATTGTTTTTTTT
38654027 ACATAGTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
AAATTGTTTTTTTTTTAATCC
Found at i:38654719 original size:16 final size:16
Alignment explanation
Indices: 38654693--38654732 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 16
38654683 TTAATCATGC
38654693 AATAAATTATTA--AT
1 AATAAATTATTATTAT
*
38654707 -ATAAATTATTATTTT
1 AATAAATTATTATTAT
38654722 AATAAATTATT
1 AATAAATTATT
38654733 TAATATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATAAATTATTATTAT
Found at i:38654726 original size:29 final size:30
Alignment explanation
Indices: 38654693--38654757 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 30
38654683 TTAATCATGC
38654693 AATAAATTA-TTAATA-TAAATTATTATTTT
1 AATAAATTATTTAATATTAAATT-TTATTTT
*
38654722 AATAAATTATTTAATATTTTAATTTTATTTT
1 AATAAATTATTTAATA-TTAAATTTTATTTT
38654753 AATAA
1 AATAA
38654758 TAAATTTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 9 0.28
30 6 0.19
31 12 0.38
32 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
AATAAATTATTTAATATTAAATTTTATTTT
Found at i:38659242 original size:9 final size:9
Alignment explanation
Indices: 38659228--38659276 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
38659218 TATGGTTAAA
38659228 AATTAACCG
1 AATTAACCG
*
38659237 AATTAATCG
1 AATTAACCG
*
38659246 AATTACCCG
1 AATTAACCG
*
38659255 AATT-ACTCA
1 AATTAAC-CG
38659264 AATTAACCG
1 AATTAACCG
38659273 AATT
1 AATT
38659277 GAATCACTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
8 1 0.03
9 29 0.91
10 2 0.06
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:38659255 original size:18 final size:18
Alignment explanation
Indices: 38659227--38659282 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
38659217 TTATGGTTAA
38659227 AAATTAACCGAATTAATC
1 AAATTAACCGAATTAATC
* * *
38659245 GAATTACCCGAATTACTC
1 AAATTAACCGAATTAATC
38659263 AAATTAACCGAATTGAATC
1 AAATTAACCGAATT-AATC
38659282 A
1 A
38659283 CTACATAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
18 27 0.87
19 4 0.13
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.27
Consensus pattern (18 bp):
AAATTAACCGAATTAATC
Found at i:38659346 original size:8 final size:7
Alignment explanation
Indices: 38659335--38659379 Score: 51
Period size: 6 Copynumber: 6.6 Consensus size: 7
38659325 AAATTATTTA
38659335 TTTAGACT
1 TTTAGA-T
38659343 TTTAGAT
1 TTTAGAT
38659350 TTTAG-T
1 TTTAGAT
38659356 TTTAG-T
1 TTTAGAT
38659362 TTTAG-T
1 TTTAGAT
38659368 TTTAGAAT
1 TTTAG-AT
38659376 TTTA
1 TTTA
38659380 TTTTTATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 18 0.51
7 6 0.17
8 11 0.31
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.60
Consensus pattern (7 bp):
TTTAGAT
Found at i:38659360 original size:6 final size:6
Alignment explanation
Indices: 38659342--38659372 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
38659332 TTATTTAGAC
38659342 TTTTAG ATTTTAG TTTTAG TTTTAG TTTTAG
1 TTTTAG -TTTTAG TTTTAG TTTTAG TTTTAG
38659373 AATTTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (6 bp):
TTTTAG
Found at i:38659364 original size:12 final size:13
Alignment explanation
Indices: 38659342--38659385 Score: 63
Period size: 12 Copynumber: 3.4 Consensus size: 13
38659332 TTATTTAGAC
38659342 TTTTAGATTTTAG
1 TTTTAGATTTTAG
38659355 TTTTAG-TTTTAG
1 TTTTAGATTTTAG
*
38659367 TTTTAGAATTTTAT
1 TTTTAG-ATTTTAG
38659381 TTTTA
1 TTTTA
38659386 TATATTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 12 0.43
13 6 0.21
14 10 0.36
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (13 bp):
TTTTAGATTTTAG
Found at i:38661920 original size:28 final size:28
Alignment explanation
Indices: 38661888--38661959 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
38661878 TAATGAGATT
*
38661888 AGCACTAAGTGTGCGAGATTAATGGTAA
1 AGCACTAAGTGTGCGAGATTAATGATAA
* * * * *
38661916 AGCACTAAGTGTGTGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGATTAATGATAA
38661944 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
38661960 ACTTATTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTAATGATAA
Found at i:38672498 original size:15 final size:14
Alignment explanation
Indices: 38672478--38672518 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
38672468 GAAAGTTTTG
*
38672478 AAAATTTTCAAAAA
1 AAAAATTTCAAAAA
38672492 AAAAA-TTCAAAAA
1 AAAAATTTCAAAAA
38672505 AAAAATCTTCAAAA
1 AAAAAT-TTCAAAA
38672519 TTTAAAAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 13 0.54
14 4 0.17
15 7 0.29
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAATTTCAAAAA
Found at i:38672974 original size:17 final size:17
Alignment explanation
Indices: 38672954--38672991 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
38672944 ATTTTCAATT
38672954 TTTATAATATTCTAAAA
1 TTTATAATATTCTAAAA
38672971 TTTATAATATTCTAAAA
1 TTTATAATATTCTAAAA
38672988 TTTA
1 TTTA
38672992 ATTCAACGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTATAATATTCTAAAA
Found at i:38682012 original size:21 final size:21
Alignment explanation
Indices: 38681988--38682041 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
38681978 CATTTTCTAA
38681988 AACCATTTGACTTTTGGAATT
1 AACCATTTGACTTTTGGAATT
*
38682009 AACCACTTG---TTTGGAATT
1 AACCATTTGACTTTTGGAATT
*
38682027 AACCACTTTAACTTT
1 AACCA-TTTGACTTT
38682042 ATTATACGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
18 14 0.54
19 2 0.08
21 8 0.31
22 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (21 bp):
AACCATTTGACTTTTGGAATT
Found at i:38682023 original size:18 final size:18
Alignment explanation
Indices: 38682000--38682034 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
38681990 CCATTTGACT
38682000 TTTGGAATTAACCACTTG
1 TTTGGAATTAACCACTTG
38682018 TTTGGAATTAACCACTT
1 TTTGGAATTAACCACTT
38682035 TAACTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (18 bp):
TTTGGAATTAACCACTTG
Found at i:38688325 original size:14 final size:14
Alignment explanation
Indices: 38688306--38688333 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38688296 GTTTAAAGAT
38688306 GGTTAAAAACTAAG
1 GGTTAAAAACTAAG
38688320 GGTTAAAAACTAAG
1 GGTTAAAAACTAAG
38688334 TAAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
GGTTAAAAACTAAG
Found at i:38690817 original size:15 final size:16
Alignment explanation
Indices: 38690794--38690823 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
38690784 AAAAATTAAT
38690794 ATATAAATTATAAATA
1 ATATAAATTATAAATA
38690810 ATAT-AATTATAAAT
1 ATATAAATTATAAAT
38690824 TAAAGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATAAATTATAAATA
Found at i:38690821 original size:22 final size:21
Alignment explanation
Indices: 38690782--38690825 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
38690772 AGCTAAGTTG
38690782 ATAAAAATTAATATATAAATT
1 ATAAAAATTAATATATAAATT
38690803 ATAAATAATATAAT-TATAAATT
1 ATAAA-AAT-TAATATATAAATT
38690825 A
1 A
38690826 AAGTTTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 12 0.57
23 4 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
ATAAAAATTAATATATAAATT
Found at i:38696912 original size:14 final size:14
Alignment explanation
Indices: 38696893--38696920 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38696883 TTTTAAAGAT
38696893 GGTTAAAAACTAAG
1 GGTTAAAAACTAAG
38696907 GGTTAAAAACTAAG
1 GGTTAAAAACTAAG
38696921 TAAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
GGTTAAAAACTAAG
Found at i:38698466 original size:19 final size:20
Alignment explanation
Indices: 38698422--38698466 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
38698412 ATCATGTTCA
38698422 TATTTTTAACATAGTTTAAT
1 TATTTTTAACATAGTTTAAT
38698442 TA-TTTTATA-ATA-TTTAAT
1 TATTTTTA-ACATAGTTTAAT
38698460 TATTTTT
1 TATTTTT
38698467 CGACAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 8 0.35
19 12 0.52
20 3 0.13
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TATTTTTAACATAGTTTAAT
Found at i:38704300 original size:29 final size:29
Alignment explanation
Indices: 38704263--38704437 Score: 104
Period size: 30 Copynumber: 5.9 Consensus size: 29
38704253 AGTGGGATCA
* *
38704263 TGATGGTCGTCACCGTCCCTTTTCATAGT
1 TGATAGTCGTCACCATCCCTTTTCATAGT
*
38704292 TGATAGTCGTCACCATCCCTTTTCATAAT
1 TGATAGTCGTCACCATCCCTTTTCATAGT
* * * * * *
38704321 CGATAG-C-TGAAGCTATTCATTTTCATAATT
1 TGATAGTCGT-CA-CCATCCCTTTTCAT-AGT
* * *
38704351 TGATGGTCGTCACCATCCTTTTTCAATATT
1 TGATAGTCGTCACCATCCCTTTTC-ATAGT
* * * * *
38704381 TGATAGCCG-AAGCTATACCTTTTCATAAT
1 TGATAGTCGTCA-CCATCCCTTTTCATAGT
* *
38704410 TCAATGGTCGTCACCATCCCTTTTCATA
1 T-GATAGTCGTCACCATCCCTTTTCATA
38704438 ATCGATAGCC
Statistics
Matches: 109, Mismatches: 28, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
27 1 0.01
28 2 0.02
29 48 0.44
30 52 0.48
31 5 0.05
32 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (29 bp):
TGATAGTCGTCACCATCCCTTTTCATAGT
Found at i:38704432 original size:30 final size:30
Alignment explanation
Indices: 38704268--38704471 Score: 136
Period size: 29 Copynumber: 6.9 Consensus size: 30
38704258 GATCATGATG
* *
38704268 GTCGTCACCGTCCCTTTTCATAGTT-GATA
1 GTCGTCACCATCCCTTTTCATAATTCGATA
38704297 GTCGTCACCATCCCTTTTCATAA-TCGATA
1 GTCGTCACCATCCCTTTTCATAATTCGATA
* * * * * *
38704326 G-C-TGAAGCTATTCATTTTCATAATTTGATG
1 GTCGT-CA-CCATCCCTTTTCATAATTCGATA
* *
38704356 GTCGTCACCATCCTTTTTCA-ATATTTGATA
1 GTCGTCACCATCCCTTTTCATA-ATTCGATA
* * * * * *
38704386 GCCG-AAGCTATACCTTTTCATAATTCAATG
1 GTCGTCA-CCATCCCTTTTCATAATTCGATA
38704416 GTCGTCACCATCCCTTTTCATAA-TCGATA
1 GTCGTCACCATCCCTTTTCATAATTCGATA
* * *
38704445 GCCG-AAGCTATCCCTTTTCATAATTCG
1 GTCGTCA-CCATCCCTTTTCATAATTCG
38704472 GTGATCATCG
Statistics
Matches: 133, Mismatches: 30, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
27 1 0.01
28 4 0.03
29 63 0.47
30 60 0.45
31 4 0.03
32 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.37
Consensus pattern (30 bp):
GTCGTCACCATCCCTTTTCATAATTCGATA
Found at i:38704470 original size:59 final size:59
Alignment explanation
Indices: 38704278--38704471 Score: 273
Period size: 59 Copynumber: 3.3 Consensus size: 59
38704268 GTCGTCACCG
* * *
38704278 TCCCTTTTCATAGTT-GATAGTCGTCACCATCCCTTTTCATAATCGATAGCTGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
* * * * * *
38704336 TTCATTTTCATAATTTGATGGTCGTCACCATCCTTTTTCAATATTTGATAGCCGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTC-ATAATCGATAGCCGAAGCTA
* *
38704396 TACCTTTTCATAATTCAATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
38704455 TCCCTTTTCATAATTCG
1 TCCCTTTTCATAATTCG
38704472 GTGATCATCG
Statistics
Matches: 117, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
58 12 0.10
59 54 0.46
60 51 0.44
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (59 bp):
TCCCTTTTCATAATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
Found at i:38716955 original size:19 final size:17
Alignment explanation
Indices: 38716920--38716955 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
38716910 TACGAAATAA
38716920 AATAATTACAATTAATT
1 AATAATTACAATTAATT
38716937 AATAATATACAACTTAATT
1 AATAAT-TACAA-TTAATT
38716956 TCATTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 5 0.29
19 6 0.35
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATTACAATTAATT
Found at i:38724358 original size:39 final size:40
Alignment explanation
Indices: 38724241--38724422 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
38724231 GCTACTCGTT
*
38724241 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
38724281 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
38724321 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
38724360 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
38724401 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
38724423 AGACATCATT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:38724359 original size:79 final size:81
Alignment explanation
Indices: 38724241--38724422 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
38724231 GCTACTCGTT
* *
38724241 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
38724305 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
38724321 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
38724384 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
38724401 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
38724423 AGACATCATT
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 4 0.04
79 55 0.62
80 30 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:38728241 original size:50 final size:50
Alignment explanation
Indices: 38728162--38728353 Score: 222
Period size: 50 Copynumber: 3.8 Consensus size: 50
38728152 CTAAGGGAAT
* ** *
38728162 GAGGTCTCATGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGATAA
1 GAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGA
* * *
38728212 GAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGA
** * * *
38728262 GAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCAATATGA
1 GAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGA
** * * * *
38728312 GAACTCGCATGTAAGACCATATCTGGGACATGACATTGGCAC
1 GAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCAC
38728354 TACAAGAAAC
Statistics
Matches: 118, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 118 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGA
Found at i:38728339 original size:100 final size:100
Alignment explanation
Indices: 38728172--38728353 Score: 247
Period size: 100 Copynumber: 1.8 Consensus size: 100
38728162 GAGGTCTCAT
* *** ** * *
38728172 GTAAGACCATGTCTAGGACATGGCATTGGCATTGAGATAAGAGGTCCCATGTAAGACCATGTTTG
1 GTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATCTG
* *
38728237 GGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
66 GGACATGACATTGGCACCGAGATGAGAGGTCCCCC
* * *
38728272 GTAAGACCATGTCTAGGACATGGCATGGGCACCAATATGAGAACTCGCATGTAAGACCATATCTG
1 GTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATCTG
38728337 GGACATGACATTGGCAC
66 GGACATGACATTGGCAC
38728354 TACAAGAAAC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
100 69 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (100 bp):
GTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATCTG
GGACATGACATTGGCACCGAGATGAGAGGTCCCCC
Found at i:38728640 original size:12 final size:12
Alignment explanation
Indices: 38728625--38728657 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
38728615 GTAAGTAAAC
38728625 AAGT-AAGAGAGA
1 AAGTAAAGA-AGA
38728637 AAGTAAAGAAGA
1 AAGTAAAGAAGA
38728649 AAGTAAAGA
1 AAGTAAAGA
38728658 TCTTAATGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (12 bp):
AAGTAAAGAAGA
Found at i:38734768 original size:13 final size:13
Alignment explanation
Indices: 38734752--38734777 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38734742 CGGAATGATT
38734752 TTTGAAAATTTCG
1 TTTGAAAATTTCG
38734765 TTTGAAAATTTCG
1 TTTGAAAATTTCG
38734778 ATGTTTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTCG
Found at i:38735886 original size:50 final size:50
Alignment explanation
Indices: 38735827--38736010 Score: 203
Period size: 50 Copynumber: 3.7 Consensus size: 50
38735817 AATGAGGTCA
** *
38735827 CATGTAAGACCATGTCTGGGAAATGGCGTTGGCACTGAGATAAGACGTCC
1 CATGTAAGACCATGTCTGGGAAATGGCGTTGGCACCAAGATGAGACGTCC
* *
38735877 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGAAATGGCGTTGGCACCAAGATGAGACGTCC
** * **
38735927 CCCGTAAGACCATGTCT-GGAACATGGC-ATGGACACCAATTTGAGAAC-TCC
1 CATGTAAGACCATGTCTGGGAA-ATGGCGTTGG-CACCAAGATGAG-ACGTCC
* * *
38735977 CATGTAAGACCATATCTGGGATATGGCATTGGCA
1 CATGTAAGACCATGTCTGGGAAATGGCGTTGGCA
38736011 GTACAAGAAA
Statistics
Matches: 112, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 6 0.05
50 99 0.88
51 7 0.06
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGAAATGGCGTTGGCACCAAGATGAGACGTCC
Found at i:38746345 original size:26 final size:26
Alignment explanation
Indices: 38746297--38746423 Score: 136
Period size: 26 Copynumber: 5.0 Consensus size: 26
38746287 TTTCTCACCC
* *
38746297 CAATTTTA-CC-CAGTAAAAATTTGA
1 CAATTTTACCCTCGGTAAAATTTTGA
* *
38746321 CAATTTTACCTTTGGTAAAATTTTGA
1 CAATTTTACCCTCGGTAAAATTTTGA
* ** *
38746347 CCATTTTA-CCTCGAAAAAATTTTAA
1 CAATTTTACCCTCGGTAAAATTTTGA
*
38746372 CAATTTTACCCTCGATAAAATTTTGA
1 CAATTTTACCCTCGGTAAAATTTTGA
38746398 CAATTTTACCCAT-GGTAAAATTTTGA
1 CAATTTTACCC-TCGGTAAAATTTTGA
38746424 GTGTAGAGCC
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
24 8 0.09
25 20 0.24
26 56 0.66
27 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.39
Consensus pattern (26 bp):
CAATTTTACCCTCGGTAAAATTTTGA
Found at i:38746391 original size:51 final size:50
Alignment explanation
Indices: 38746297--38746407 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 50
38746287 TTTCTCACCC
* * * * *
38746297 CAATTTTACC-CAGTAAAAATTTGACAATTTTACCTTTGGTAAAATTTTGA
1 CAATTTTACCTC-GAAAAAATTTAACAATTTTACCCTCGATAAAATTTTGA
*
38746347 CCATTTTACCTCGAAAAAATTTTAACAATTTTACCCTCGATAAAATTTTGA
1 CAATTTTACCTCGAAAAAA-TTTAACAATTTTACCCTCGATAAAATTTTGA
38746398 CAATTTTACC
1 CAATTTTACC
38746408 CATGGTAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
50 15 0.29
51 37 0.71
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (50 bp):
CAATTTTACCTCGAAAAAATTTAACAATTTTACCCTCGATAAAATTTTGA
Found at i:38752734 original size:21 final size:19
Alignment explanation
Indices: 38752699--38752742 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
38752689 TATCAAAATC
38752699 AAAATCAAAAACAAAAAAGAA
1 AAAATCAAAAAC--AAAAGAA
**
38752720 AAAATCAAAGTCAAAAGAA
1 AAAATCAAAAACAAAAGAA
38752739 AAAA
1 AAAA
38752743 GAGAAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
21 10 0.48
ACGTcount: A:0.77, C:0.09, G:0.07, T:0.07
Consensus pattern (19 bp):
AAAATCAAAAACAAAAGAA
Found at i:38752769 original size:29 final size:26
Alignment explanation
Indices: 38752693--38752779 Score: 84
Period size: 29 Copynumber: 3.1 Consensus size: 26
38752683 AAAAAATATC
*
38752693 AAAATCAAAATCAAAAACAAAAAAGAA
1 AAAATCAAAGTC-AAAACAAAAAAGAA
*
38752720 AAAATCAAAGTCAAAAGAAAAAAGAGA
1 AAAATCAAAGTCAAAACAAAAAAGA-A
* *
38752747 AATCAATTAAAGTCAAAATAAAAATATGAA
1 AA--AATCAAAGTCAAAACAAAAA-A-GAA
38752777 AAA
1 AAA
38752780 GAGAAAAAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
26 12 0.24
27 14 0.27
28 1 0.02
29 18 0.35
30 4 0.08
31 2 0.04
ACGTcount: A:0.71, C:0.08, G:0.08, T:0.13
Consensus pattern (26 bp):
AAAATCAAAGTCAAAACAAAAAAGAA
Found at i:38753679 original size:14 final size:14
Alignment explanation
Indices: 38753647--38753679 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
38753637 AAAAAGGGTG
38753647 AAAAATGAAAAAGT
1 AAAAATGAAAAAGT
*
38753661 GAAAATGAAAAAGT
1 AAAAATGAAAAAGT
38753675 AAAAA
1 AAAAA
38753680 AATGGAGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (14 bp):
AAAAATGAAAAAGT
Found at i:38755133 original size:44 final size:44
Alignment explanation
Indices: 38755085--38755399 Score: 149
Period size: 44 Copynumber: 7.2 Consensus size: 44
38755075 AAGATTGTAG
* *
38755085 ATCTTATCTCCCTAAGCAGTAGTGCAGCAGATCAAAGACGTCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGTCAA
* * * * * **
38755129 ATCTTATCTTCCTTAGGAGTAG-GGAAACAGATTTAACCCG-CAA
1 ATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATTAAAGACGTCAA
** * * * * * * * *
38755172 GCCTTGTCTCCCTGAGCAGCAGCGGAGCAGGTTGAAGATTGT-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGA-CGTCAA
* * * * *
38755216 ATCCTATCTCCCTAAGCAGTAGTGGAACAGATCAAAAACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGTCAA
* * * * * **
38755260 ATCTTATCTTCCC-CAGGAGTAG-GGAAACAAATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGCAGTAGTGG-AGCAGATTAAAGACGTCAA
** * * * * * * *
38755303 GCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGTTGAAGATTGT-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGA-CGTCAA
* **
38755347 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGTCAA
38755391 ATCTTATCT
1 ATCTTATCT
38755400 TCTCCAGGAG
Statistics
Matches: 186, Mismatches: 73, Indels: 24
0.66 0.26 0.08
Matches are distributed among these distances:
42 4 0.02
43 53 0.28
44 125 0.67
45 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGTCAA
Found at i:38755139 original size:131 final size:131
Alignment explanation
Indices: 38754946--38755532 Score: 777
Period size: 131 Copynumber: 4.5 Consensus size: 131
38754936 ATAAGTTTGG
* * *
38754946 AGATTGTAGATCTTATCTCCCTAAGAAATAGTGGATG--GATCGAAGACGACAAATCTTATCTTC
1 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGA-GCAGATCAAAGACGACAAATCTTATCTTC
*
38755009 CCCAGGAGTAGGGAAATAGATTTAAGCCACAAGCCTTGTCTCCCTGAGCAGCAGCGAAGCAGGTT
65 CCCAGGAGTAGGGAAACAGATTTAAGCCACAAGCCTTGTCTCCCTGAGCAGCAGCGAAGCAGGTT
38755074 GA
130 GA
* *
38755076 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGCAGCAGATCAAAGACGTCAAATCTTATCTTCC
1 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTCC
** * * *
38755141 TTAGGAGTAGGGAAACAGATTTAACCCGCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGCAGGTTG
66 CCAGGAGTAGGGAAACAGATTTAAGCCACAAGCCTTGTCTCCCTGAGCAGCAGCGAAGCAGGTTG
38755206 A
131 A
* * * *
38755207 AGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAACAGATCAAAAACGGCAAATCTTATCTTCC
1 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTCC
* * *
38755272 CCAGGAGTAGGGAAACAAATTTAAGCCACAAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGTTG
66 CCAGGAGTAGGGAAACAGATTTAAGCCACAAGCCTTGTCTCCCTGAGCAGCAGCGAAGCAGGTTG
38755337 A
131 A
* *
38755338 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAACAAATCTTATCTTCT
1 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTCC
* ** * * * * *
38755403 CCAGGAGTAGGGAAACATATTTAAGCCACAATTCTTATGTCCCTGACCAGCAGTGGAA-TAGGTT
66 CCAGGAGTAGGGAAACAGATTTAAGCCACAAGCCTTGTCTCCCTGAGCAGCAG-CGAAGCAGGTT
38755467 GGA
130 -GA
** * * * * * * * *
38755470 A-ATTACAGATCTTGTCTCCCTAAGCAATAGCGAAGCAGATCGAAGATGGCGAATCTTATCTTC
1 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTC
38755533 AAGTGTAAGA
Statistics
Matches: 405, Mismatches: 48, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
129 1 0.00
130 32 0.08
131 367 0.91
132 5 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (131 bp):
AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTCC
CCAGGAGTAGGGAAACAGATTTAAGCCACAAGCCTTGTCTCCCTGAGCAGCAGCGAAGCAGGTTG
A
Found at i:38755709 original size:85 final size:85
Alignment explanation
Indices: 38755566--38755723 Score: 201
Period size: 85 Copynumber: 1.9 Consensus size: 85
38755556 CCGATAATCC
* * * ** * *
38755566 TATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTACCTCTCTGAAGTTGCAGTA
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATGAAAAAAATAGATCCTACCTCCCTGAAGTTGCAGTA
*
38755631 GAGTGGATCGCATCCAACTT
66 GAGAGGATCGCATCCAACTT
* *
38755651 TATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAAAAATCA-ATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATGAAAAAAAT-AGATCCTACCTCCCTGAAGTTGCAGT
*
38755715 GGAGAGGAT
65 AGAGAGGAT
38755724 TAAAACCACA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
85 60 0.98
86 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (85 bp):
TATCTCCCTAAAGTTGCAGTGGAGCAGATGAAAAAAATAGATCCTACCTCCCTGAAGTTGCAGTA
GAGAGGATCGCATCCAACTT
Found at i:38755743 original size:44 final size:43
Alignment explanation
Indices: 38755561--38755745 Score: 126
Period size: 44 Copynumber: 4.3 Consensus size: 43
38755551 TGAAGCCGAT
* * * * ** *
38755561 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACAAC
* * * * *** *
38755604 AGATCTTACCTCTCTGAAGTTGCAGTAGAGTGGATCGCATC--C
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACAAC
* *
38755646 AA-CTTTATCTCCCTGAAGTTGCAGTGGAGCA-GATGAAAAAAATC
1 AATC-TTATCTCCCTGAAGTTGCAGTGGAG-AGGATTAAAACAA-C
* *
38755690 AATCCTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACAAC
38755733 AGATCTTATCTCC
1 A-ATCTTATCTCC
38755746 GTAAGTAGTA
Statistics
Matches: 106, Mismatches: 27, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
40 1 0.01
41 27 0.25
42 1 0.01
43 4 0.04
44 72 0.68
45 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACAAC
Found at i:38755837 original size:127 final size:127
Alignment explanation
Indices: 38755561--38755968 Score: 433
Period size: 127 Copynumber: 3.2 Consensus size: 127
38755551 TGAAGCCGAT
* * * * *** * * **
38755561 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTACCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGAGAATTAAAACCACAGATCTTATCTCTCT-AAGCAG
* * ** * * ** * * *
38755626 CAGTAGAGTGGATCGCATCCA-ACTTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAAAAATC
65 TAGTGGAGCAGATCACATCCAGTC-TTATCTCCCT-AAGCAGTAGTGGAGCAGACGGAAAAAATC
* *
38755690 AATCCTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCACAGATCTTATCTC-CGTAAGTAG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGAGAATTAAAACCACAGATCTTATCTCTC-TAAGCAG
* * * *
38755754 TAGTGGAGCAGATCACATCCAGTTTTATCTTCTTAAGCAGTAGTGCAGCAGACGGAAAAAATC
65 TAGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGGAAAAAATC
* * *
38755817 AATCCTATTTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCATAGATCTTATCTCTCTAAGCAGT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGAGAATTAAAACCACAGATCTTATCTCTCTAAGCAGT
** * *
38755882 AGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGTTGTAGTGGAGCAGACAGAAGAAATC
66 AGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGGAAAAAATC
* *
38755944 AATCCTATCTCTCTAAAGTTGCAGT
1 AATCCTATCTCCCTGAAGTTGCAGT
38755969 AGAGCAGATC
Statistics
Matches: 236, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
127 157 0.67
128 31 0.13
129 48 0.20
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (127 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGAGAATTAAAACCACAGATCTTATCTCTCTAAGCAGT
AGTGGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGGAAAAAATC
Found at i:38758668 original size:6 final size:6
Alignment explanation
Indices: 38758656--38758688 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
38758646 CAAGTTCCTA
*
38758656 ATTT-C ATTTTC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
38758689 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58
Consensus pattern (6 bp):
ATTTCC
Found at i:38760636 original size:39 final size:39
Alignment explanation
Indices: 38760596--38760810 Score: 349
Period size: 39 Copynumber: 5.5 Consensus size: 39
38760586 ATTCACTTTT
* *
38760596 AAGCATATATCACAATACACATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
38760635 AAGCATATATCACAATATTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
38760674 AAGCATACATCACAATACTCATATAGTCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
38760713 AAACATATATCATAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
38760752 AAGCATACATCACAATACTCATATAATCAAATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
38760791 AAGCATATATCACAATACTC
1 AAGCATATATCACAATACTC
38760811 GAATACATGT
Statistics
Matches: 161, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 161 1.00
ACGTcount: A:0.47, C:0.22, G:0.03, T:0.28
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:38760648 original size:22 final size:23
Alignment explanation
Indices: 38760615--38760680 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
38760605 TCACAATACA
38760615 CATATAATCACATAACATTTAAG
1 CATATAATCACATAACATTTAAG
*
38760638 CATAT-ATCAC--AATA-TT---
1 CATATAATCACATAACATTTAAG
*
38760654 CATATAATCACATAACATTCAAG
1 CATATAATCACATAACATTTAAG
38760677 CATA
1 CATA
38760681 CATCACAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 14
0.66 0.06 0.28
Matches are distributed among these distances:
16 5 0.15
17 5 0.15
19 5 0.15
20 4 0.12
22 5 0.15
23 9 0.27
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (23 bp):
CATATAATCACATAACATTTAAG
Found at i:38762824 original size:50 final size:49
Alignment explanation
Indices: 38762751--38762938 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 49
38762741 TCTTGTACTT
* * * **
38762751 CCAATGTCATATCCCAGATATGGTCTTACATGACAGTTCTCATATCAGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGA-ACCTCTCATATCAGTG
* *
38762801 CCAACT-CCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTCGGTG
1 CCAA-TGCCATGTCCCAGACATGGTCTTACAT-GAACCTCTCATATCAGTG
* *
38762851 CCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATAATCTCAATGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACAT-GAACCTCTCAT-A--TC-A-G-TG
38762907 CCAATGCCATGTCCCAGACATGGTCTTACATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATG
38762939 GGATCTCATT
Statistics
Matches: 117, Mismatches: 12, Indels: 13
0.82 0.08 0.09
Matches are distributed among these distances:
49 1 0.01
50 77 0.66
51 3 0.03
53 2 0.02
55 2 0.02
56 32 0.27
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGAACCTCTCATATCAGTG
Found at i:38762892 original size:100 final size:105
Alignment explanation
Indices: 38762699--38762939 Score: 264
Period size: 99 Copynumber: 2.3 Consensus size: 105
38762689 TGATAATAAC
* * * ** * * * * *
38762699 ATGCCAAAGCCATGTCCCAGACATGGTCTTACGTGGGATGTTTCTTGTAC--TTCCAATGTCATA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCT-CGGTGCCAATGCCATA
**
38762762 TCCCAGATATGGTCTTACATGACAGTTCTCAT-A-TC-A-G
65 TCCCAGATATGGTCTTACATGACACCTCTCATAACTCAATG
*
38762799 -TGCCAACT-CCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTCGGTGCCAATGCCATG
1 ATGCCAA-TGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTCGGTGCCAATGCCATA
**
38762862 TCCCAGATATGGTCTTACATGGGACCTCTCATAATCTCAATG
65 TCCCAGATATGGTCTTACATGACACCTCTCATAA-CTCAATG
38762904 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
38762940 GATCTCATTC
Statistics
Matches: 116, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
98 1 0.01
99 38 0.33
100 38 0.33
101 1 0.01
103 2 0.02
104 1 0.01
105 2 0.02
106 33 0.28
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (105 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATCTCGGTGCCAATGCCATAT
CCCAGATATGGTCTTACATGACACCTCTCATAACTCAATG
Found at i:38765399 original size:51 final size:51
Alignment explanation
Indices: 38765230--38765406 Score: 207
Period size: 51 Copynumber: 3.5 Consensus size: 51
38765220 AGTGAAAGTG
*
38765230 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-ATGA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
* * * * * *
38765280 AAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTT-
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATA--TTA
* * * * *
38765332 -CGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
38765382 ATGGTCACGTGTGTAGTACTATGTG
1 ATGGTCACGTGTGTAGTACTATGTG
38765407 ACTACAAACG
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
49 2 0.02
50 40 0.40
51 58 0.57
53 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
Found at i:38766329 original size:51 final size:51
Alignment explanation
Indices: 38766160--38766336 Score: 207
Period size: 51 Copynumber: 3.5 Consensus size: 51
38766150 AGTGAAAGTG
*
38766160 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-ATGA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
* * * * * *
38766210 AAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTT-
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATA--TTA
* * * * *
38766262 -CGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
38766312 ATGGTCACGTGTGTAGTACTATGTG
1 ATGGTCACGTGTGTAGTACTATGTG
38766337 ACTACAAACG
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
49 2 0.02
50 40 0.40
51 58 0.57
53 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
Found at i:38766405 original size:930 final size:930
Alignment explanation
Indices: 38764605--38767416 Score: 4566
Period size: 930 Copynumber: 3.0 Consensus size: 930
38764595 ATGTGGACTC
38764605 GATGGCTAGGGTTGTTCATTCTTTCAAGCTTCATGGTAAGTCCGTTCTAGCCCCGTTTTTCTTAT
1 GATGGCTAGGGTTGTTCATTCTTTCAAGCTTCATGGTAAGTCCGTTCTAGCCCCGTTTTTCTTAT
38764670 TCTTTATAATTTTAGAATCCCGATAACTTGCTTAAGCTATTTCTATCATTAATTTGAGCTAGAAA
66 TCTTTATAATTTTAGAATCCCGATAACTTGCTTAAGCTATTTCTATCATTAATTTGAGCTAGAAA
38764735 TTATGTTTGAAAAATTACCCATAGATGAAAAGTGTGAATTTTGATGTTTCATGATAGAATATGAA
131 TTATGTTTGAAAAATTACCCATAGATGAAAAGTGTGAATTTTGATGTTTCATGATAGAATATGAA
38764800 GCTTAAAATTATGTTAAACGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAA
196 GCTTAAAATTATGTTAAACGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAA
38764865 TTGTTAAAAATTATTATTGTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGG
261 TTGTTAAAAATTATTATTGTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGG
38764930 AAAAATTGTTCAGCATGTCATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGG
326 AAAAATTGTTCAGCATGTCATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGG
38764995 GCAAAATCATAATTTTGTGAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGG
391 GCAAAATCATAATTTTGTGAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGG
38765060 ATTGGATTGAATAATTTGAGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAG
456 ATTGGATTGAATAATTTGAGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAG
38765125 AAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTG
521 AAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTG
38765190 ACATGGACTGTGTGTAGGTCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTG
586 ACATGGACTGTGTGTAGGTCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTG
38765255 TAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGT
651 TAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGT
38765320 ACCGGATAGCTTCGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATG
716 ACCGGATAGCTTCGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATG
38765385 GTCACGTGTGTAGTACTATGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATC
781 GTCACGTGTGTAGTACTATGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATC
38765450 ACGTGTGTAGTACTATGTAAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACT
846 ACGTGTGTAGTACTATGTAAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACT
38765515 ATGTGCAAACCACTGAATGT
911 ATGTGCAAACCACTGAATGT
38765535 GATGGCTAGGGTTGTTCATTCTTTCAAGCTTCATGGTAAGTCCGTTCTAGCCCCGTTTTTCTTAT
1 GATGGCTAGGGTTGTTCATTCTTTCAAGCTTCATGGTAAGTCCGTTCTAGCCCCGTTTTTCTTAT
38765600 TCTTTATAATTTTAGAATCCCGATAACTTGCTTAAGCTATTTCTATCATTAATTTGAGCTAGAAA
66 TCTTTATAATTTTAGAATCCCGATAACTTGCTTAAGCTATTTCTATCATTAATTTGAGCTAGAAA
38765665 TTATGTTTGAAAAATTACCCATAGATGAAAAGTGTGAATTTTGATGTTTCATGATAGAATATGAA
131 TTATGTTTGAAAAATTACCCATAGATGAAAAGTGTGAATTTTGATGTTTCATGATAGAATATGAA
38765730 GCTTAAAATTATGTTAAACGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAA
196 GCTTAAAATTATGTTAAACGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAA
38765795 TTGTTAAAAATTATTATTGTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGG
261 TTGTTAAAAATTATTATTGTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGG
38765860 AAAAATTGTTCAGCATGTCATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGG
326 AAAAATTGTTCAGCATGTCATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGG
38765925 GCAAAATCATAATTTTGTGAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGG
391 GCAAAATCATAATTTTGTGAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGG
38765990 ATTGGATTGAATAATTTGAGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAG
456 ATTGGATTGAATAATTTGAGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAG
38766055 AAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTG
521 AAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTG
38766120 ACATGGACTGTGTGTAGGTCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTG
586 ACATGGACTGTGTGTAGGTCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTG
38766185 TAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGT
651 TAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGT
38766250 ACCGGATAGCTTCGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATG
716 ACCGGATAGCTTCGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATG
38766315 GTCACGTGTGTAGTACTATGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATC
781 GTCACGTGTGTAGTACTATGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATC
38766380 ACGTGTGTAGTACTATGTAAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACT
846 ACGTGTGTAGTACTATGTAAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACT
38766445 ATGTGCAAACCACTGAATGT
911 ATGTGCAAACCACTGAATGT
* * *** * * * ** ****
38766465 --TCGCTA------TT-ATACCGACATG-TTTAGTGAGAATAGTTAGAATTCTTA-ATGAGTATA
1 GATGGCTAGGGTTGTTCATTCTTTCAAGCTTCA-TG-GTA-AGTCCG--TTC-TAGCCCCGT-T-
* ****** * * ** * ** * * * * **
38766519 TTT-TCAAAGGAAACAAATGGAAATATCATCCGA-ATTTTGTACAATGAGATAATTC-ATTTTTA
58 TTTCTTATTCTTTATAATTTTAGA-ATC--CCGATAACTTG--C-TTAAGCTATTTCTATCATTA
*** * ** ** ** *
38766581 GTGAAGAGAGGTCAGAGATATTGA-GCAGTGAAATAAGGGA-ATATTTA-AAGAATAAAGTGT-A
117 ---ATTTGAGCT-AGA-A-ATT-ATG-TTTGAAA-AA-TTACCCA--TAGATG-A-AAAGTGTGA
* * * *** ** * * * * ** *
38766642 CTAATTGGCCAAGTCAAAAATTTTGAAAATTTTATGGCAAGAAGACATGTGA-GTCT-AGCGATT
168 --ATTTTG--ATGT--TTCATGAT-AGAATATGA-AGC-TTAA-A-AT-T-ATGT-TAAACGATT
38766705 TTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAATTGTTAAAAATTATTATTGTTCA
219 TTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAATTGTTAAAAATTATTATTGTTCA
38766770 TAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGGAAAAATTGTTCAGCATGTCATAA
284 TAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGGAAAAATTGTTCAGCATGTCATAA
38766835 AACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGGGCAAAATCATAATTTTGTGAAAC
349 AACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGGGCAAAATCATAATTTTGTGAAAC
38766900 TTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGGATTGGATTGAATAATTTGAGAAA
414 TTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGGATTGGATTGAATAATTTGAGAAA
38766965 GGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAGAAAAAGTGAGAAATTTCCCGATT
479 GGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAGAAAAAGTGAGAAATTTCCCGATT
38767030 GAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTGACATGGACTGTGTGTAGGTCACT
544 GAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTGACATGGACTGTGTGTAGGTCACT
38767095 ATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAAT
609 ATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAAT
38767160 GAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCATGTGT
674 GAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCATGTGT
38767225 CTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCACGTGTGTAGTACTATGTGA
739 CTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCACGTGTGTAGTACTATGTGA
38767290 CTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATCACGTGTGTAGTACTATGTAAATG
804 CTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATCACGTGTGTAGTACTATGTAAATG
38767355 CTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACTATGTGCAAACCACTGAATGT
869 CTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACTATGTGCAAACCACTGAATGT
38767417 TCGCTATTAT
Statistics
Matches: 1780, Mismatches: 60, Indels: 62
0.94 0.03 0.03
Matches are distributed among these distances:
920 3 0.00
921 8 0.00
922 4 0.00
923 4 0.00
925 5 0.00
926 11 0.01
927 6 0.00
928 9 0.01
929 4 0.00
930 936 0.53
931 8 0.00
933 5 0.00
934 3 0.00
935 1 0.00
936 4 0.00
937 6 0.00
938 3 0.00
939 3 0.00
940 4 0.00
941 7 0.00
942 4 0.00
944 3 0.00
946 3 0.00
947 6 0.00
948 2 0.00
949 2 0.00
950 1 0.00
951 2 0.00
952 721 0.41
953 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (930 bp):
GATGGCTAGGGTTGTTCATTCTTTCAAGCTTCATGGTAAGTCCGTTCTAGCCCCGTTTTTCTTAT
TCTTTATAATTTTAGAATCCCGATAACTTGCTTAAGCTATTTCTATCATTAATTTGAGCTAGAAA
TTATGTTTGAAAAATTACCCATAGATGAAAAGTGTGAATTTTGATGTTTCATGATAGAATATGAA
GCTTAAAATTATGTTAAACGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAA
TTGTTAAAAATTATTATTGTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGG
AAAAATTGTTCAGCATGTCATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGG
GCAAAATCATAATTTTGTGAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGG
ATTGGATTGAATAATTTGAGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAG
AAAAAGTGAGAAATTTCCCGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTG
ACATGGACTGTGTGTAGGTCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTG
TAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGT
ACCGGATAGCTTCGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATG
GTCACGTGTGTAGTACTATGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATC
ACGTGTGTAGTACTATGTAAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACT
ATGTGCAAACCACTGAATGT
Found at i:38767281 original size:51 final size:51
Alignment explanation
Indices: 38767112--38767288 Score: 207
Period size: 51 Copynumber: 3.5 Consensus size: 51
38767102 AGTGAAAGTG
*
38767112 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-ATGA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
* * * * * *
38767162 AAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTT-
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATA--TTA
* * * * *
38767214 -CGATCATGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTA
1 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
38767264 ATGGTCACGTGTGTAGTACTATGTG
1 ATGGTCACGTGTGTAGTACTATGTG
38767289 ACTACAAACG
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
49 2 0.02
50 40 0.40
51 58 0.57
53 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATATTA
Found at i:38767592 original size:952 final size:952
Alignment explanation
Indices: 38765748--38767651 Score: 3808
Period size: 952 Copynumber: 2.0 Consensus size: 952
38765738 TTATGTTAAA
38765748 CGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAATTGTTAAAAATTATTATT
1 CGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAATTGTTAAAAATTATTATT
38765813 GTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGGAAAAATTGTTCAGCATGT
66 GTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGGAAAAATTGTTCAGCATGT
38765878 CATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGGGCAAAATCATAATTTTGT
131 CATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGGGCAAAATCATAATTTTGT
38765943 GAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGGATTGGATTGAATAATTTG
196 GAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGGATTGGATTGAATAATTTG
38766008 AGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAGAAAAAGTGAGAAATTTCC
261 AGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAGAAAAAGTGAGAAATTTCC
38766073 CGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTGACATGGACTGTGTGTAGG
326 CGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTGACATGGACTGTGTGTAGG
38766138 TCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACC
391 TCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACC
38766203 GGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCA
456 GGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCA
38766268 TGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCACGTGTGTAGTACTA
521 TGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCACGTGTGTAGTACTA
38766333 TGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATCACGTGTGTAGTACTATGT
586 TGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATCACGTGTGTAGTACTATGT
38766398 AAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACTATGTGCAAACCACTGAAT
651 AAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACTATGTGCAAACCACTGAAT
38766463 GTTCGCTATTATACCGACATGTTTAGTGAGAATAGTTAGAATTCTTAATGAGTATATTTTCAAAG
716 GTTCGCTATTATACCGACATGTTTAGTGAGAATAGTTAGAATTCTTAATGAGTATATTTTCAAAG
38766528 GAAACAAATGGAAATATCATCCGAATTTTGTACAATGAGATAATTCATTTTTAGTGAAGAGAGGT
781 GAAACAAATGGAAATATCATCCGAATTTTGTACAATGAGATAATTCATTTTTAGTGAAGAGAGGT
38766593 CAGAGATATTGAGCAGTGAAATAAGGGAATATTTAAAGAATAAAGTGTACTAATTGGCCAAGTCA
846 CAGAGATATTGAGCAGTGAAATAAGGGAATATTTAAAGAATAAAGTGTACTAATTGGCCAAGTCA
38766658 AAAATTTTGAAAATTTTATGGCAAGAAGACATGTGAGTCTAG
911 AAAATTTTGAAAATTTTATGGCAAGAAGACATGTGAGTCTAG
38766700 CGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAATTGTTAAAAATTATTATT
1 CGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAATTGTTAAAAATTATTATT
38766765 GTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGGAAAAATTGTTCAGCATGT
66 GTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGGAAAAATTGTTCAGCATGT
38766830 CATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGGGCAAAATCATAATTTTGT
131 CATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGGGCAAAATCATAATTTTGT
38766895 GAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGGATTGGATTGAATAATTTG
196 GAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGGATTGGATTGAATAATTTG
38766960 AGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAGAAAAAGTGAGAAATTTCC
261 AGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAGAAAAAGTGAGAAATTTCC
38767025 CGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTGACATGGACTGTGTGTAGG
326 CGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTGACATGGACTGTGTGTAGG
38767090 TCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACC
391 TCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACC
38767155 GGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCA
456 GGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCA
38767220 TGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCACGTGTGTAGTACTA
521 TGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCACGTGTGTAGTACTA
38767285 TGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATCACGTGTGTAGTACTATGT
586 TGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATCACGTGTGTAGTACTATGT
38767350 AAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACTATGTGCAAACCACTGAAT
651 AAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACTATGTGCAAACCACTGAAT
38767415 GTTCGCTATTATACCGACATGTTTAGTGAGAATAGTTAGAATTCTTAATGAGTATATTTTCAAAG
716 GTTCGCTATTATACCGACATGTTTAGTGAGAATAGTTAGAATTCTTAATGAGTATATTTTCAAAG
38767480 GAAACAAATGGAAATATCATCCGAATTTTGTACAATGAGATAATTCATTTTTAGTGAAGAGAGGT
781 GAAACAAATGGAAATATCATCCGAATTTTGTACAATGAGATAATTCATTTTTAGTGAAGAGAGGT
38767545 CAGAGATATTGAGCAGTGAAATAAGGGAATATTTAAAGAATAAAGTGTACTAATTGGCCAAGTCA
846 CAGAGATATTGAGCAGTGAAATAAGGGAATATTTAAAGAATAAAGTGTACTAATTGGCCAAGTCA
38767610 AAAATTTTGAAAATTTTATGGCAAGAAGACATGTGAGTCTAG
911 AAAATTTTGAAAATTTTATGGCAAGAAGACATGTGAGTCTAG
38767652 TTTCGGGGAG
Statistics
Matches: 952, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
952 952 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.30
Consensus pattern (952 bp):
CGATTTTTGCTAAACGATTTTCAGCGAAAACGAGTGAAACAATATAATTGTTAAAAATTATTATT
GTTCATAAGTGCACTTTAGAGTAAGAATTTGATGTTGCTAGAGAAGGAAAAATTGTTCAGCATGT
CATAAAACATAAGAAAAAGGAATAAAATTTAATTTCAGAGCCTAGGGGCAAAATCATAATTTTGT
GAAACTTTAGGGGCAAAAATGTAATTTTTCCAAAATGTGATTTTTGGATTGGATTGAATAATTTG
AGAAAGGCAAGGAATTGACTTTGATTAGTGAAAAAGAAAAAAATGAGAAAAAGTGAGAAATTTCC
CGATTGAATATTCGGAATAAAAAGTGATAGAACTGATCACATGTCTGACATGGACTGTGTGTAGG
TCACTATGTGAAAGTGAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACC
GGAATGAAAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCA
TGTGTCTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCACGTGTGTAGTACTA
TGTGACTACAAACGTGCAGGCTACTACGTGAACCAAAAAGTTTGATCACGTGTGTAGTACTATGT
AAATGCTACTATGTGTATCGAATGATAATAGTTAAATGAGTGGTACTATGTGCAAACCACTGAAT
GTTCGCTATTATACCGACATGTTTAGTGAGAATAGTTAGAATTCTTAATGAGTATATTTTCAAAG
GAAACAAATGGAAATATCATCCGAATTTTGTACAATGAGATAATTCATTTTTAGTGAAGAGAGGT
CAGAGATATTGAGCAGTGAAATAAGGGAATATTTAAAGAATAAAGTGTACTAATTGGCCAAGTCA
AAAATTTTGAAAATTTTATGGCAAGAAGACATGTGAGTCTAG
Found at i:38771785 original size:39 final size:39
Alignment explanation
Indices: 38771741--38771921 Score: 353
Period size: 39 Copynumber: 4.6 Consensus size: 39
38771731 ATTCACTTTT
*
38771741 AAGCATATATCACATTACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
38771780 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
38771819 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
38771858 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
38771897 AAGCATATATCACAATACTCATATA
1 AAGCATATATCACAATACTCATATA
38771922 CAAATTTGTA
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 141 1.00
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:38781928 original size:46 final size:46
Alignment explanation
Indices: 38781861--38781957 Score: 158
Period size: 46 Copynumber: 2.1 Consensus size: 46
38781851 TTCAAAATAG
38781861 TTTTTATGGAAAAGGTAGAAAAGATTTTGAAAGTTTTTATGGATGA
1 TTTTTATGGAAAAGGTAGAAAAGATTTTGAAAGTTTTTATGGATGA
* * * *
38781907 TTTTTATTGACAAGGTAGAAAATATTTTGGAAGTTTTTATGGATGA
1 TTTTTATGGAAAAGGTAGAAAAGATTTTGAAAGTTTTTATGGATGA
38781953 TTTTT
1 TTTTT
38781958 CAGTGTTCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.33, C:0.01, G:0.22, T:0.44
Consensus pattern (46 bp):
TTTTTATGGAAAAGGTAGAAAAGATTTTGAAAGTTTTTATGGATGA
Found at i:38782443 original size:27 final size:27
Alignment explanation
Indices: 38782412--38782589 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
38782402 TAAATTGTAC
38782412 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
38782439 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38782465 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
38782493 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
38782521 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38782548 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
38782575 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
38782590 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:38782526 original size:82 final size:81
Alignment explanation
Indices: 38782413--38782568 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
38782403 AAATTGTACA
* *
38782413 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
38782477 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
38782494 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
38782559 TGCGAGTTGA
65 TGCGAATTGA
38782569 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:38782580 original size:82 final size:81
Alignment explanation
Indices: 38782409--38782589 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
38782399 GATTAAATTG
* *
38782409 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
38782474 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
38782490 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
38782554 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
38782572 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
38782590 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:38790506 original size:27 final size:27
Alignment explanation
Indices: 38790475--38790652 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
38790465 TAAATTGTAC
38790475 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
38790502 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38790528 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
38790556 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
38790584 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38790611 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
38790638 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
38790653 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:38790589 original size:82 final size:81
Alignment explanation
Indices: 38790476--38790631 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
38790466 AAATTGTACA
* *
38790476 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
38790540 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
38790557 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
38790622 TGCGAGTTGA
65 TGCGAATTGA
38790632 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:38790643 original size:82 final size:81
Alignment explanation
Indices: 38790472--38790652 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
38790462 GATTAAATTG
* *
38790472 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
38790537 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
38790553 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
38790617 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
38790635 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
38790653 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:38793059 original size:45 final size:45
Alignment explanation
Indices: 38792989--38793074 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
38792979 AGATACTCGG
* * *
38792989 TGGATTCAGCAAATAACAACCACCTTATTAATCAATGATGTCCGA
1 TGGAATCAGCAAATAACAACAACCTTACTAATCAATGATGTCCGA
* *
38793034 TGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGT
1 TGGAATCAGCAAATAACAACAACCTTACTAATCAATGATGT
38793075 TCGGTTCACA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (45 bp):
TGGAATCAGCAAATAACAACAACCTTACTAATCAATGATGTCCGA
Found at i:38793179 original size:51 final size:51
Alignment explanation
Indices: 38793081--38793194 Score: 131
Period size: 51 Copynumber: 2.2 Consensus size: 51
38793071 ATGTTCGGTT
* * *
38793081 CACATAGTAGCCTATATATAGTACTACACATATGACCATTACCATCCGATA
1 CACATAGTAGCCTACATATAGTACTACACAGATGACCATAACCATCCGATA
* * * * *
38793132 CACGTAGTAGCCTACATATAGTACTACACAGGTGATCGA-AACTATCCGGTA
1 CACATAGTAGCCTACATATAGTACTACACAGATGA-CCATAACCATCCGATA
*
38793183 CGCATAGTAGCC
1 CACATAGTAGCC
38793195 ATCACTTTCA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 50 0.96
52 2 0.04
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (51 bp):
CACATAGTAGCCTACATATAGTACTACACAGATGACCATAACCATCCGATA
Found at i:38793465 original size:30 final size:30
Alignment explanation
Indices: 38793425--38793481 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
38793415 AAAATCATAC
38793425 TTTCAAAAAATTAC-ATTTTTGCCCCTAAAG
1 TTTCAAAAAATTACGATTTTT-CCCCTAAAG
*
38793455 TTTCACAAAATTACGATTTTTCCCCTA
1 TTTCAAAAAATTACGATTTTTCCCCTA
38793482 TGCTCGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (30 bp):
TTTCAAAAAATTACGATTTTTCCCCTAAAG
Found at i:38795527 original size:30 final size:30
Alignment explanation
Indices: 38795486--38795542 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
38795476 AAAATAATAC
* *
38795486 TTTCCCAAAATTATGTTTTTGCCCCTAAAG
1 TTTCACAAAATTATGATTTTGCCCCTAAAG
38795516 TTTCACAAAATTATGATTTTGCCCCTA
1 TTTCACAAAATTATGATTTTGCCCCTA
38795543 TGCTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (30 bp):
TTTCACAAAATTATGATTTTGCCCCTAAAG
Found at i:38798566 original size:45 final size:45
Alignment explanation
Indices: 38798497--38798582 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
38798487 AGATACTCGA
* *
38798497 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCTGG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTGG
38798542 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
38798583 TCGGTTCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTGG
Found at i:38798768 original size:96 final size:96
Alignment explanation
Indices: 38798591--38798770 Score: 263
Period size: 96 Copynumber: 1.9 Consensus size: 96
38798581 GTTCGGTTCA
* * * *
38798591 CATAGTAGCCTACACATAGTACTACACATGTGACCATTACCATCTAATACATGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCAATACACGTAGTAGCCTACA
38798656 CATAGTACTACACACGTGATCGAAACTACCCG
65 CATAGTACTACACACGTGATCGAAACTACCCG
* * **
38798688 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTACA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCAATACACGTAGTAGCCTACA
38798752 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
38798771 CCATCACTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
95 4 0.05
96 37 0.50
97 33 0.45
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (96 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCAATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTACCCG
Found at i:38798899 original size:10 final size:10
Alignment explanation
Indices: 38798880--38798911 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
38798870 CATTCGAGAA
38798880 TTTT-TCACT
1 TTTTATCACT
38798889 TTTTATCACT
1 TTTTATCACT
38798899 TTTTATCACT
1 TTTTATCACT
38798909 TTT
1 TTT
38798912 CTTTCTATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTATCACT
Found at i:38799054 original size:30 final size:30
Alignment explanation
Indices: 38799013--38799069 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
38799003 AAAATAATAC
* *
38799013 TTTCCCAAAATTATGTTTTTGCCCCTAAAG
1 TTTCACAAAATTATGATTTTGCCCCTAAAG
38799043 TTTCACAAAATTATGATTTTGCCCCTA
1 TTTCACAAAATTATGATTTTGCCCCTA
38799070 TGCTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (30 bp):
TTTCACAAAATTATGATTTTGCCCCTAAAG
Found at i:38803238 original size:23 final size:22
Alignment explanation
Indices: 38803195--38803238 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
38803185 TTCTAAGTCG
38803195 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
38803218 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
38803239 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:38803355 original size:45 final size:45
Alignment explanation
Indices: 38803286--38803371 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
38803276 AGATACTCGA
* *
38803286 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCTGG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTGG
38803331 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
38803372 TCGGTTCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTGG
Found at i:38803557 original size:96 final size:96
Alignment explanation
Indices: 38803380--38803559 Score: 263
Period size: 96 Copynumber: 1.9 Consensus size: 96
38803370 GTTCGGTTCA
* * * *
38803380 CATAGTAGCCTACACATAGTACTACACATGTGACCATTACCATCTAATACATGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCAATACACGTAGTAGCCTACA
38803445 CATAGTACTACACACGTGATCGAAACTACCCG
65 CATAGTACTACACACGTGATCGAAACTACCCG
* * **
38803477 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTACA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCAATACACGTAGTAGCCTACA
38803541 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
38803560 CCATCACTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
95 4 0.05
96 37 0.50
97 33 0.45
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (96 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCAATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTACCCG
Found at i:38803688 original size:10 final size:10
Alignment explanation
Indices: 38803669--38803700 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
38803659 CATTCGAGAA
38803669 TTTT-TCACT
1 TTTTATCACT
38803678 TTTTATCACT
1 TTTTATCACT
38803688 TTTTATCACT
1 TTTTATCACT
38803698 TTT
1 TTT
38803701 CTTTCTATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTATCACT
Found at i:38803843 original size:30 final size:30
Alignment explanation
Indices: 38803802--38803858 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
38803792 AAAATAATAC
* *
38803802 TTTCCCAAAATTATGTTTTTGCCCCTAAAG
1 TTTCACAAAATTATGATTTTGCCCCTAAAG
38803832 TTTCACAAAATTATGATTTTGCCCCTA
1 TTTCACAAAATTATGATTTTGCCCCTA
38803859 TGCTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (30 bp):
TTTCACAAAATTATGATTTTGCCCCTAAAG
Found at i:38813151 original size:14 final size:14
Alignment explanation
Indices: 38813132--38813161 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
38813122 GTGTGTTTGG
38813132 AGAGTGTTTTGTTT
1 AGAGTGTTTTGTTT
38813146 AGAGTGTTTTGTTT
1 AGAGTGTTTTGTTT
38813160 AG
1 AG
38813162 GTATGTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (14 bp):
AGAGTGTTTTGTTT
Found at i:38818041 original size:21 final size:21
Alignment explanation
Indices: 38818015--38818056 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
38818005 CTTACCGAGG
38818015 CCTATAACAACATAAACACAA
1 CCTATAACAACATAAACACAA
*
38818036 CCTATAACAACATAAATACAA
1 CCTATAACAACATAAACACAA
38818057 TTTCAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (21 bp):
CCTATAACAACATAAACACAA
Found at i:38826787 original size:17 final size:17
Alignment explanation
Indices: 38826739--38826788 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 17
38826729 CACCTGGCCG
*
38826739 TGTGTCACACAAGA-C-
1 TGTGTCACACATGACCA
*
38826754 TGTGTCAC-C-TAACCA
1 TGTGTCACACATGACCA
38826769 TGTGTCACACATGACCA
1 TGTGTCACACATGACCA
38826786 TGT
1 TGT
38826789 CACCTAGTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 1 0.04
14 2 0.07
15 16 0.57
16 1 0.04
17 8 0.29
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (17 bp):
TGTGTCACACATGACCA
Found at i:38827113 original size:30 final size:30
Alignment explanation
Indices: 38827077--38827152 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
38827067 TGGTTGACAC
* * **
38827077 ATCCCTTTTCGTAATTCGATAATTGAAGTT
1 ATCCCTTTTCATAATTCGACAACCGAAGTT
* * *
38827107 ATCCCTTTTCATAGTTTGACAGCCGAAGTT
1 ATCCCTTTTCATAATTCGACAACCGAAGTT
38827137 ATCCCTTTTCATAATT
1 ATCCCTTTTCATAATT
38827153 TGATGGCCGC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGACAACCGAAGTT
Found at i:38827171 original size:30 final size:30
Alignment explanation
Indices: 38827137--38827390 Score: 150
Period size: 30 Copynumber: 8.5 Consensus size: 30
38827127 AGCCGAAGTT
* * *
38827137 ATCCCTTTTCATAATTTGATGGCCGCCACC
1 ATCCCTTTTCATAATTTGATAGTCGTCACC
* ** * *
38827167 ATCCCTTTTCATAGTTCAATGGTTGTCACC
1 ATCCCTTTTCATAATTTGATAGTCGTCACC
* *
38827197 A-CCCTTTTCATAATTTGATAG-C-TAAAGCT
1 ATCCCTTTTCATAATTTGATAGTCGT-CA-CC
* *
38827226 ATCCCCTTTT-ATAGA-TTGATAGTCGACGCC
1 AT-CCCTTTTCATA-ATTTGATAGTCGTCACC
*
38827256 ATCCCTTTTCATAGA-TTGATAG-C-TGAAGCC
1 ATCCCTTTTCATA-ATTTGATAGTCGT-CA-CC
* *
38827286 ATCCCTTTTCATAGA-TTGATAGCCG-AAGCC
1 ATCCCTTTTCATA-ATTTGATAGTCGTCA-CC
* * * *
38827316 ATCCTTTTTCATAGTTCGATCGTCGTCACC
1 ATCCCTTTTCATAATTTGATAGTCGTCACC
* * * *
38827346 ATCCCTTTTTATAGTTCGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATAGTCGTCACC
38827376 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
38827391 CGATAGCCAA
Statistics
Matches: 179, Mismatches: 31, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
27 1 0.01
28 1 0.01
29 26 0.15
30 140 0.78
31 11 0.06
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGTCGTCACC
Found at i:38827233 original size:60 final size:60
Alignment explanation
Indices: 38827165--38827403 Score: 174
Period size: 60 Copynumber: 4.0 Consensus size: 60
38827155 ATGGCCGCCA
* * *
38827165 CCATCCCTTTTCATAG-TTCAATGGTTGTCACCA-CCCTTTTCATA-ATTTGATAGCTAAAG
1 CCATCCCTTTTCATAGATT-AATAGTCGACACCATCCCTTTTCATAGA-TTGATAGCTAAAG
* * * *
38827224 CTATCCCCTTTT-ATAGATTGATAGTCGACGCCATCCCTTTTCATAGATTGATAGCTGAAG
1 CCAT-CCCTTTTCATAGATTAATAGTCGACACCATCCCTTTTCATAGATTGATAGCTAAAG
* * * * *
38827284 CCATCCCTTTTCATAGATTGATAGCCGA-AGCCATCCTTTTTCATAG-TTCGATCGTCGT-CA-
1 CCATCCCTTTTCATAGATTAATAGTCGACA-CCATCCCTTTTCATAGATT-GATAG-C-TAAAG
* * * * * *
38827344 CCATCCCTTTTTATAG-TTCGATGGTCGTCACCATCCCTTTTCATA-ATCGATAGCCAAAG
1 CCATCCCTTTTCATAGATT-AATAGTCGACACCATCCCTTTTCATAGATTGATAGCTAAAG
38827403 C
1 C
38827404 TATTCCATTT
Statistics
Matches: 144, Mismatches: 22, Indels: 28
0.74 0.11 0.14
Matches are distributed among these distances:
58 2 0.01
59 32 0.22
60 105 0.73
61 4 0.03
62 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (60 bp):
CCATCCCTTTTCATAGATTAATAGTCGACACCATCCCTTTTCATAGATTGATAGCTAAAG
Found at i:38827376 original size:179 final size:179
Alignment explanation
Indices: 38827076--38827406 Score: 450
Period size: 179 Copynumber: 1.8 Consensus size: 179
38827066 ATGGTTGACA
* * ** * **
38827076 CATCCCTTTTCGTAATTCGATAATTGAAGTTATCCCTTTTCATAGTTTGACAGCCGAAGTTATCC
1 CATCCCTTTTCATAATTCGATAACTGAAGCCATCCCTTTTCATAGATTGACAGCCGAAGCCATCC
* * *
38827141 CTTTTCATAATTTGATGGCCGCCACCATCCCTTTTCATAGTTCAATGGTTGTCACCA-CCCTTTT
66 CTTTTCATAATTCGATCGCCGCCACCATCCCTTTTCATAGTTCAATGGTCGTCACCATCCCTTTT
* *
38827205 CATAATTTGATAGCTAAAGCTATCCCCTTTTATAGATTGATAGTCGACGC
131 CATAA-TCGATAGCCAAAGCTATCCCCTTTTATAGATTGATAGTCGACGC
* *
38827255 CATCCCTTTTCATAGATT-GATAGCTGAAGCCATCCCTTTTCATAGATTGATAGCCGAAGCCATC
1 CATCCCTTTTCATA-ATTCGATAACTGAAGCCATCCCTTTTCATAGATTGACAGCCGAAGCCATC
* * * * * *
38827319 CTTTTTCATAGTTCGATCGTCGTCACCATCCCTTTTTATAGTTCGATGGTCGTCACCATCCCTTT
65 CCTTTTCATAATTCGATCGCCGCCACCATCCCTTTTCATAGTTCAATGGTCGTCACCATCCCTTT
38827384 TCATAATCGATAGCCAAAGCTAT
130 TCATAATCGATAGCCAAAGCTAT
38827407 TCCATTTCAT
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
179 115 0.88
180 15 0.12
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (179 bp):
CATCCCTTTTCATAATTCGATAACTGAAGCCATCCCTTTTCATAGATTGACAGCCGAAGCCATCC
CTTTTCATAATTCGATCGCCGCCACCATCCCTTTTCATAGTTCAATGGTCGTCACCATCCCTTTT
CATAATCGATAGCCAAAGCTATCCCCTTTTATAGATTGATAGTCGACGC
Found at i:38835164 original size:16 final size:16
Alignment explanation
Indices: 38835143--38835194 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
38835133 TGAACACCAT
38835143 TAAACTCACAAATGAG
1 TAAACTCACAAATGAG
38835159 TAAACTCATC--A--A-
1 TAAACTCA-CAAATGAG
*
38835171 CAAACTCACAAATGAG
1 TAAACTCACAAATGAG
38835187 TAAACTCA
1 TAAACTCA
38835195 TCAACATCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
11 1 0.04
12 7 0.25
13 2 0.07
15 2 0.07
16 15 0.54
17 1 0.04
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.19
Consensus pattern (16 bp):
TAAACTCACAAATGAG
Found at i:38835184 original size:28 final size:28
Alignment explanation
Indices: 38835144--38835200 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
38835134 GAACACCATT
38835144 AAACTCACAAATGAGTAAACTCATCAAC
1 AAACTCACAAATGAGTAAACTCATCAAC
38835172 AAACTCACAAATGAGTAAACTCATCAAC
1 AAACTCACAAATGAGTAAACTCATCAAC
38835200 A
1 A
38835201 TCACATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.25, G:0.07, T:0.18
Consensus pattern (28 bp):
AAACTCACAAATGAGTAAACTCATCAAC
Found at i:38842933 original size:3 final size:3
Alignment explanation
Indices: 38842925--38842958 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
38842915 AAATGAGTAA
* *
38842925 AAT AAT AAT AGT AAT AAT AAT ACT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
38842959 TTAAATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:38842942 original size:12 final size:12
Alignment explanation
Indices: 38842925--38842958 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
38842915 AAATGAGTAA
*
38842925 AATAATAATAGT
1 AATAATAATACT
38842937 AATAATAATACT
1 AATAATAATACT
38842949 AATAATAATA
1 AATAATAATA
38842959 TTAAATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (12 bp):
AATAATAATACT
Found at i:38842945 original size:15 final size:15
Alignment explanation
Indices: 38842891--38842958 Score: 54
Period size: 15 Copynumber: 4.6 Consensus size: 15
38842881 TAACAATATG
*
38842891 GTAATACTAATAAGT-
1 GTAATAATAATAA-TA
38842906 GT-ATAACTAA-AATGA
1 GTAATAA-TAATAAT-A
38842921 GTAA-AATAATAATA
1 GTAATAATAATAATA
*
38842935 GTAATAATAATACTA
1 GTAATAATAATAATA
*
38842950 ATAATAATA
1 GTAATAATA
38842959 TTAAATTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
13 1 0.02
14 13 0.30
15 29 0.66
16 1 0.02
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (15 bp):
GTAATAATAATAATA
Found at i:38844079 original size:3 final size:3
Alignment explanation
Indices: 38844071--38844104 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
38844061 AAATGAGAAA
* *
38844071 AAT AAT AAT AGT AAT AAT AAT AGT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
38844105 TTAAATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:38844088 original size:12 final size:12
Alignment explanation
Indices: 38844071--38844104 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
38844061 AAATGAGAAA
38844071 AATAATAATAGT
1 AATAATAATAGT
38844083 AATAATAATAGT
1 AATAATAATAGT
38844095 AATAATAATA
1 AATAATAATA
38844105 TTAAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (12 bp):
AATAATAATAGT
Found at i:38845225 original size:3 final size:3
Alignment explanation
Indices: 38845217--38845250 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
38845207 AAATGAGAAA
* *
38845217 AAT AAT AAT AGT AAT AAT AAT AGT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
38845251 TTAAATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:38845234 original size:12 final size:12
Alignment explanation
Indices: 38845217--38845250 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
38845207 AAATGAGAAA
38845217 AATAATAATAGT
1 AATAATAATAGT
38845229 AATAATAATAGT
1 AATAATAATAGT
38845241 AATAATAATA
1 AATAATAATA
38845251 TTAAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (12 bp):
AATAATAATAGT
Found at i:38846095 original size:17 final size:17
Alignment explanation
Indices: 38846062--38846097 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
38846052 ATTATTTTCC
* *
38846062 TTGCGTGTTTCTGTTGT
1 TTGCGTGTTTATCTTGT
38846079 TTGCGTGTTTATCTTGT
1 TTGCGTGTTTATCTTGT
38846096 TT
1 TT
38846098 TGTAGGTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.11, G:0.25, T:0.61
Consensus pattern (17 bp):
TTGCGTGTTTATCTTGT
Found at i:38847413 original size:39 final size:39
Alignment explanation
Indices: 38847372--38847587 Score: 362
Period size: 39 Copynumber: 5.5 Consensus size: 39
38847362 ATTCACTTTT
* *
38847372 AAGCATATATCACATTACTCATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
38847411 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
38847450 AAGCATATATCA-ACATACTCATATAATCACATAACATTC
1 AAGCATATATCACA-ATACTCATATAATCACATAACATTC
38847489 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * *
38847528 AAGCGTATATCACAATACTCATATAAGCACAGAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
38847567 AAGTATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
38847588 AATACAAATT
Statistics
Matches: 168, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 166 0.99
40 1 0.01
ACGTcount: A:0.45, C:0.22, G:0.04, T:0.28
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:38848363 original size:38 final size:37
Alignment explanation
Indices: 38848303--38848393 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 37
38848293 TTGTCACATT
* * *
38848303 GGGCATGTTGAACATGCGAATCGAATAATATCATGTG
1 GGGCATGTTTAACATGCAAATCGAATAATATCATGTA
*
38848340 GGGCATGTTTTAACATGCAAATCGAATAATATCCTGTA
1 GGGCATG-TTTAACATGCAAATCGAATAATATCATGTA
38848378 GGGCATGTTTAACATG
1 GGGCATGTTTAACATG
38848394 TAGTCAAATC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 16 0.33
38 33 0.67
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (37 bp):
GGGCATGTTTAACATGCAAATCGAATAATATCATGTA
Found at i:38851678 original size:20 final size:19
Alignment explanation
Indices: 38851655--38851792 Score: 59
Period size: 20 Copynumber: 6.9 Consensus size: 19
38851645 AAGTGCAGCA
38851655 AGGGGTACCGAAGTACAAGT
1 AGGGGTACCGAAGTACAA-T
* *
38851675 AGGGGCA-CGTAAG-AGGAAT
1 AGGGGTACCG-AAGTA-CAAT
* **
38851694 CAAGGGTATTGAAGTACAAAT
1 -AGGGGTACCGAAGTAC-AAT
* * *
38851715 AGGGG-AACGTAAATGCAATT
1 AGGGGTACCG-AAGTACAA-T
38851735 AGGGGTACCGAAGTACAAAT
1 AGGGGTACCGAAGTAC-AAT
* *
38851755 AGGGGCA-TGTAAGTACAAT
1 AGGGGTACCG-AAGTACAAT
*
38851774 CAGGGGTACCGAAGAACAA
1 -AGGGGTACCGAAGTACAA
38851793 ACAGGGGCAC
Statistics
Matches: 86, Mismatches: 19, Indels: 26
0.66 0.15 0.20
Matches are distributed among these distances:
19 12 0.14
20 63 0.73
21 11 0.13
ACGTcount: A:0.39, C:0.13, G:0.32, T:0.16
Consensus pattern (19 bp):
AGGGGTACCGAAGTACAAT
Found at i:38851701 original size:40 final size:40
Alignment explanation
Indices: 38851655--38851815 Score: 182
Period size: 40 Copynumber: 4.0 Consensus size: 40
38851645 AAGTGCAGCA
* *
38851655 AGGGGTACCGAAGTACAAGTAGGGGCACGTAAGAGGAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGAGCAATC
* ** * *
38851695 AAGGGTATTGAAGTACAAATAGGGGAACGTAA-ATGCAATT
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGA-GCAATC
*
38851735 AGGGGTACCGAAGTACAAATAGGGGCATGTAAGTA-CAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAG-AGCAATC
* * * *
38851775 AGGGGTACCGAAGAACAAACAGGGGCACATAAGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGAGCAATC
38851815 A
1 A
38851816 TTGAATAATT
Statistics
Matches: 99, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 97 0.98
42 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.31, T:0.16
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAATAGGGGCACGTAAGAGCAATC
Found at i:38851793 original size:80 final size:80
Alignment explanation
Indices: 38851655--38851813 Score: 203
Period size: 80 Copynumber: 2.0 Consensus size: 80
38851645 AAGTGCAGCA
* * ** * *
38851655 AGGGGTACCGAAGTACAAGTAGGGGCACGTAAGAGGAATCAAGGGTATTGAAGTACAAATAGGGG
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGAGCAATCAAGGGTACCGAAGAACAAACAGGGG
*
38851720 AACGTAAATGCAATT
66 AACATAAATGCAATT
* *
38851735 AGGGGTACCGAAGTACAAATAGGGGCATGTAAGTA-CAATCAGGGGTACCGAAGAACAAACAGGG
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAG-AGCAATCAAGGGTACCGAAGAACAAACAGGG
* *
38851799 GCACATAAGTGCAAT
65 GAACATAAATGCAAT
38851814 CATTGAATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 66 0.99
81 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.31, T:0.16
Consensus pattern (80 bp):
AGGGGTACCGAAGTACAAATAGGGGCACGTAAGAGCAATCAAGGGTACCGAAGAACAAACAGGGG
AACATAAATGCAATT
Found at i:38851797 original size:20 final size:20
Alignment explanation
Indices: 38851735--38851799 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
38851725 AAATGCAATT
*
38851735 AGGGGTACCGAAGTACAAAT
1 AGGGGTACCGAAGTACAAAC
* * *
38851755 AGGGGCA-TGTAAGTACAATC
1 AGGGGTACCG-AAGTACAAAC
*
38851775 AGGGGTACCGAAGAACAAAC
1 AGGGGTACCGAAGTACAAAC
38851795 AGGGG
1 AGGGG
38851800 CACATAAGTG
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.34, T:0.12
Consensus pattern (20 bp):
AGGGGTACCGAAGTACAAAC
Found at i:38866565 original size:30 final size:31
Alignment explanation
Indices: 38866521--38866612 Score: 132
Period size: 30 Copynumber: 3.0 Consensus size: 31
38866511 AATCTGCCTA
*
38866521 AAAAACAGGAGAAGATAATCTTGGGTTGTTG
1 AAAAACAGAAGAAGATAATCTTGGGTTGTTG
*
38866552 AAAAA-AGAAGAAGATAATCTTGGGTTGTTA
1 AAAAACAGAAGAAGATAATCTTGGGTTGTTG
* * *
38866582 AAAAAGAGAAGAAGATAAGCATGGGTTGTTG
1 AAAAACAGAAGAAGATAATCTTGGGTTGTTG
38866613 GATTTACCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
30 28 0.51
31 27 0.49
ACGTcount: A:0.43, C:0.04, G:0.28, T:0.24
Consensus pattern (31 bp):
AAAAACAGAAGAAGATAATCTTGGGTTGTTG
Found at i:38870097 original size:304 final size:304
Alignment explanation
Indices: 38869548--38870155 Score: 1216
Period size: 304 Copynumber: 2.0 Consensus size: 304
38869538 AATCAATTTA
38869548 GTTAATTAATTAAAACCCAAATTATTAATGAAATAATAAAAATGAATTATTAAATATAATTTATA
1 GTTAATTAATTAAAACCCAAATTATTAATGAAATAATAAAAATGAATTATTAAATATAATTTATA
38869613 TTTTATTATTTACTTTAATCATGCATGACCCACTTTATAGCTTAAAAATATAATATACTCAAATT
66 TTTTATTATTTACTTTAATCATGCATGACCCACTTTATAGCTTAAAAATATAATATACTCAAATT
38869678 AATATAAAATATGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTTTAATAA
131 AATATAAAATATGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTTTAATAA
38869743 TTTCTATGTCCTAATTTCATATTTTCGCATATTTCCTTAATTTATTAAACAATGACTTGGTTTTA
196 TTTCTATGTCCTAATTTCATATTTTCGCATATTTCCTTAATTTATTAAACAATGACTTGGTTTTA
38869808 ACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAAT
261 ACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAAT
38869852 GTTAATTAATTAAAACCCAAATTATTAATGAAATAATAAAAATGAATTATTAAATATAATTTATA
1 GTTAATTAATTAAAACCCAAATTATTAATGAAATAATAAAAATGAATTATTAAATATAATTTATA
38869917 TTTTATTATTTACTTTAATCATGCATGACCCACTTTATAGCTTAAAAATATAATATACTCAAATT
66 TTTTATTATTTACTTTAATCATGCATGACCCACTTTATAGCTTAAAAATATAATATACTCAAATT
38869982 AATATAAAATATGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTTTAATAA
131 AATATAAAATATGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTTTAATAA
38870047 TTTCTATGTCCTAATTTCATATTTTCGCATATTTCCTTAATTTATTAAACAATGACTTGGTTTTA
196 TTTCTATGTCCTAATTTCATATTTTCGCATATTTCCTTAATTTATTAAACAATGACTTGGTTTTA
38870112 ACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAAT
261 ACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAAT
38870156 CCTATATATT
Statistics
Matches: 304, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
304 304 1.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (304 bp):
GTTAATTAATTAAAACCCAAATTATTAATGAAATAATAAAAATGAATTATTAAATATAATTTATA
TTTTATTATTTACTTTAATCATGCATGACCCACTTTATAGCTTAAAAATATAATATACTCAAATT
AATATAAAATATGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTTTAATAA
TTTCTATGTCCTAATTTCATATTTTCGCATATTTCCTTAATTTATTAAACAATGACTTGGTTTTA
ACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAAT
Found at i:38875313 original size:41 final size:42
Alignment explanation
Indices: 38875230--38875366 Score: 197
Period size: 42 Copynumber: 3.3 Consensus size: 42
38875220 ATAGCCAGCT
* *
38875230 ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGAATATCATATCGATGCCAATGTCCCAGAC
38875272 ATGGTCTTACACGAATATCATATC-ATGCCAATGTCCCAGAC
1 ATGGTCTTACACGAATATCATATCGATGCCAATGTCCCAGAC
** * *
38875313 ATTTTCTTACACGAATCA-CATAACGATGCCAATGTCTCAGAC
1 ATGGTCTTACACGAAT-ATCATATCGATGCCAATGTCCCAGAC
38875355 ATGGTCTTACAC
1 ATGGTCTTACAC
38875367 ATAATCACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
41 35 0.41
42 50 0.59
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGAATATCATATCGATGCCAATGTCCCAGAC
Found at i:38877893 original size:43 final size:44
Alignment explanation
Indices: 38877838--38877959 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 44
38877828 AAAATCTAGC
*
38877838 TAAAAAGGAGGAGAAGATAATCTTGGGTTGTTGGAAAAAGAATT
1 TAAAAAAGAGGAGAAGATAATCTTGGGTTGTTGGAAAAAGAATT
* * ** *
38877882 T-AGAAAGAGGAGAAGATAATTTTGGGTTGTTCAAAAAATAATT
1 TAAAAAAGAGGAGAAGATAATCTTGGGTTGTTGGAAAAAGAATT
* *
38877925 TAAAAAAGAGGAGAAGATAAACATGGGTTGTTGGA
1 TAAAAAAGAGGAGAAGATAATCTTGGGTTGTTGGA
38877960 TTTACCTTAG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 37 0.57
44 28 0.43
ACGTcount: A:0.44, C:0.02, G:0.28, T:0.25
Consensus pattern (44 bp):
TAAAAAAGAGGAGAAGATAATCTTGGGTTGTTGGAAAAAGAATT
Found at i:38892159 original size:27 final size:27
Alignment explanation
Indices: 38892142--38892621 Score: 474
Period size: 27 Copynumber: 17.6 Consensus size: 27
38892132 ATATTAAGTC
38892142 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
38892169 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
38892197 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
38892224 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
38892251 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
38892279 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
38892307 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
38892335 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
38892363 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
38892390 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
38892417 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
38892445 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
38892472 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
38892499 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
38892526 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
38892553 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
38892580 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
38892607 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
38892622 GCACAATTTA
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:38892272 original size:54 final size:54
Alignment explanation
Indices: 38892142--38892621 Score: 852
Period size: 54 Copynumber: 8.8 Consensus size: 54
38892132 ATATTAAGTC
* * * *
38892142 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACT
38892197 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
38892251 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
38892307 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
38892363 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
38892417 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAACT
38892472 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
38892526 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
38892580 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
38892622 GCACAATTTA
Statistics
Matches: 415, Mismatches: 7, Indels: 7
0.97 0.02 0.02
Matches are distributed among these distances:
54 179 0.43
55 153 0.37
56 83 0.20
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
Found at i:38892279 original size:82 final size:82
Alignment explanation
Indices: 38892142--38892621 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
38892132 ATATTAAGTC
* * * *
38892142 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
38892207 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
38892224 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
38892289 GTGCTACATAGTCAAACT
66 GTGCTACATAGTC-AACT
38892307 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
38892372 AGTGCTACATAGTCAACT
65 AGTGCTACATAGTCAACT
*
38892390 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
38892455 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
38892472 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
38892536 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
38892553 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AATTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
38892617 GTGCT
66 GTGCT
38892622 GCACAATTTA
Statistics
Matches: 389, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
81 99 0.25
82 181 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:38910490 original size:50 final size:51
Alignment explanation
Indices: 38910426--38910568 Score: 157
Period size: 51 Copynumber: 2.8 Consensus size: 51
38910416 AGGTGGAAGC
* * * *
38910426 AGTGGTAGTATATCTGCAAATCACTGGTGGCATGTTCACAAAA-T-TATATT
1 AGTGGAAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGT-TATT
* * *
38910476 AGTGGCAGTGTATCT-TAAATTCAGTGGTGGCTTGTCCACAAAAGTGTTATT
1 AGTGGAAGTATATCTGCAAA-TCAGTGGTGGCTTGTCCACAAAAGTGTTATT
* * *
38910527 AGTGGAAATTTATCTGCAAATCAGTGATGGCTTGTCCACAAA
1 AGTGGAAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAA
38910569 TGGTGTTTTG
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
49 3 0.04
50 33 0.42
51 38 0.49
52 4 0.05
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (51 bp):
AGTGGAAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTATT
Found at i:38930595 original size:27 final size:27
Alignment explanation
Indices: 38930565--38930742 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
38930555 ATATTGAGTC
* * * *
38930565 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
38930592 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
38930619 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
38930647 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
38930674 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
38930701 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
38930728 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
38930743 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:38930704 original size:82 final size:81
Alignment explanation
Indices: 38930586--38930741 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
38930576 TGCTATATAA
* *
38930586 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
38930651 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
38930668 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
38930732 CACTTAGTGC
65 CACTTAGTGC
38930742 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:38933885 original size:24 final size:24
Alignment explanation
Indices: 38933849--38933895 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
38933839 CAAATGGTAC
38933849 CAAATATGCCATTCTAACTAACAT
1 CAAATATGCCATTCTAACTAACAT
*
38933873 CAAATATGTCATTCTAACTAACA
1 CAAATATGCCATTCTAACTAACA
38933896 AAATCACACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.23, G:0.04, T:0.30
Consensus pattern (24 bp):
CAAATATGCCATTCTAACTAACAT
Done.