Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 16 of 126
Found at i:4709700 original size:7 final size:7
Alignment explanation
Indices: 4709688--4709820 Score: 67
Period size: 7 Copynumber: 18.6 Consensus size: 7
4709678 ATAGTTAATC
4709688 TAAACCA
1 TAAACCA
4709695 TAAACCA
1 TAAACCA
4709702 TAAACC-
1 TAAACCA
4709708 TAAACTC-
1 TAAAC-CA
*
4709715 TAAAACCC
1 T-AAACCA
4709723 TAAAACCA
1 T-AAACCA
*
4709731 TAAACCC
1 TAAACCA
*
4709738 TTAACACA
1 TAAAC-CA
*
4709746 T-AACCTC
1 TAAACC-A
**
4709753 TAAACTT
1 TAAACCA
*
4709760 TAAACCC
1 TAAACCA
*
4709767 T-AACCTT
1 TAAACC-A
4709774 TAAACCA
1 TAAACCA
4709781 TAAACCA
1 TAAACCA
* *
4709788 TAACCCC
1 TAAACCA
4709795 TAAACCCA
1 TAAA-CCA
*
4709803 TAATCCA
1 TAAACCA
*
4709810 TAAACCT
1 TAAACCA
4709817 TAAA
1 TAAA
4709821 ATGGTAACAC
Statistics
Matches: 99, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
6 10 0.10
7 63 0.64
8 26 0.26
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:4709707 original size:14 final size:14
Alignment explanation
Indices: 4709688--4709820 Score: 85
Period size: 14 Copynumber: 9.3 Consensus size: 14
4709678 ATAGTTAATC
*
4709688 TAAACCATAAACCA
1 TAAACCCTAAACCA
4709702 TAAA-CCTAAACTC-
1 TAAACCCTAAAC-CA
4709715 TAAAACCCTAAAACCA
1 T-AAACCCT-AAACCA
*
4709731 TAAACCCTTAACACA
1 TAAACCCTAAAC-CA
**
4709746 T-AACCTCTAAACTT
1 TAAACC-CTAAACCA
*
4709760 TAAACCCT-AACCTT
1 TAAACCCTAAACC-A
*
4709774 TAAACCATAAACCA
1 TAAACCCTAAACCA
*
4709788 TAACCCCTAAACCCA
1 TAAACCCTAAA-CCA
* * *
4709803 TAATCCATAAACCT
1 TAAACCCTAAACCA
4709817 TAAA
1 TAAA
4709821 ATGGTAACAC
Statistics
Matches: 94, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
13 10 0.11
14 40 0.43
15 39 0.41
16 5 0.05
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:4709757 original size:29 final size:29
Alignment explanation
Indices: 4709689--4709799 Score: 86
Period size: 29 Copynumber: 3.9 Consensus size: 29
4709679 TAGTTAATCT
* *
4709689 AAACCATAAACCATAAA-CCTAAACTCTA
1 AAACCCTAAACCATAAACCCTAAACACTA
*
4709717 AAACCCTAAAACCATAAACCCTTAACAC-A
1 AAACCCT-AAACCATAAACCCTAAACACTA
* ** *
4709746 TAACCTCTAAACTTTAAACCCT-AAC-CTTT
1 AAACC-CTAAACCATAAACCCTAAACAC-TA
* *
4709775 AAACCATAAACCATAACCCCTAAAC
1 AAACCCTAAACCATAAACCCTAAAC
4709800 CCATAATCCA
Statistics
Matches: 65, Mismatches: 12, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
27 1 0.02
28 21 0.32
29 34 0.52
30 9 0.14
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (29 bp):
AAACCCTAAACCATAAACCCTAAACACTA
Found at i:4709813 original size:15 final size:15
Alignment explanation
Indices: 4709778--4709815 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
4709768 AACCTTTAAA
4709778 CCATAAA-CCATAAC
1 CCATAAACCCATAAC
* *
4709792 CCCTAAACCCATAAT
1 CCATAAACCCATAAC
4709807 CCATAAACC
1 CCATAAACC
4709816 TTAAAATGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (15 bp):
CCATAAACCCATAAC
Found at i:4709820 original size:22 final size:21
Alignment explanation
Indices: 4709688--4709866 Score: 91
Period size: 21 Copynumber: 8.3 Consensus size: 21
4709678 ATAGTTAATC
4709688 TAAACCATAAACCATAAACC-
1 TAAACCATAAACCATAAACCT
* *
4709708 TAAACTC-TAAAACCCTAAAACCA
1 TAAAC-CAT-AAACCAT-AAACCT
* *
4709731 TAAACCCTTAACACAT-AACCT
1 TAAACCATAAAC-CATAAACCT
** *
4709752 CTAAACTTTAAACCCT-AACCTT
1 -TAAACCATAAACCATAAACC-T
* *
4709774 TAAACCATAAACCATAACCCC
1 TAAACCATAAACCATAAACCT
*
4709795 TAAACCCATAATCCATAAACCT
1 TAAA-CCATAAACCATAAACCT
***
4709817 TAAAATGGTAACACC-TAAACCT
1 T-AAACCATAA-ACCATAAACCT
* *
4709839 TAAACTC-TAAACCATATACCC
1 TAAAC-CATAAACCATAAACCT
4709860 TAAACCA
1 TAAACCA
4709867 AAAATCCTAA
Statistics
Matches: 120, Mismatches: 24, Indels: 29
0.69 0.14 0.17
Matches are distributed among these distances:
20 10 0.08
21 49 0.41
22 48 0.40
23 13 0.11
ACGTcount: A:0.46, C:0.31, G:0.01, T:0.21
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:4709850 original size:14 final size:14
Alignment explanation
Indices: 4709830--4709878 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
4709820 AATGGTAACA
*
4709830 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
* *
4709844 TCTAAACCATATAC
1 CCTAAACCATAAAC
* *
4709858 CCTAAACCAAAAAT
1 CCTAAACCATAAAC
4709872 CCTAAAC
1 CCTAAAC
4709879 TTTAGTGATA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:4717420 original size:9 final size:9
Alignment explanation
Indices: 4717403--4717448 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
4717393 TGAGTTTTCG
4717403 AATTCGAAT
1 AATTCGAAT
*
4717412 AACTCGAAT
1 AATTCGAAT
4717421 AATTCGAAT
1 AATTCGAAT
4717430 AATTCGAAT
1 AATTCGAAT
4717439 AATTCGAAT
1 AATTCGAAT
4717448 A
1 A
4717449 TCAAACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:4718485 original size:5 final size:5
Alignment explanation
Indices: 4718475--4718500 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
4718465 CTCGAAAATT
4718475 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
4718501 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:4723056 original size:93 final size:93
Alignment explanation
Indices: 4722897--4723082 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
4722887 CAACTTCAGA
4722897 TTTCCTTCTTTGTTGTACTTCAAACCATGCCTTAAAGTGCCTTTGACATATCTAAGCACTTTTTT
1 TTTCCTTCTTTGTTGTACTTCAAACCATGCCTTAAAGTGCCTTTGACATATCTAAGCACTTTTTT
4722962 TGCAGCTTGAAAATGCTTGTCATTGCAG
66 TGCAGCTTGAAAATGCTTGTCATTGCAG
4722990 TTTCCTTCTTTGTTGTACTTCAAACCATGCCTTAAAGTGCCTTTGACATATCTAAGCACTTTTTT
1 TTTCCTTCTTTGTTGTACTTCAAACCATGCCTTAAAGTGCCTTTGACATATCTAAGCACTTTTTT
4723055 TGCAGCTTGAAAATGCTTGTCATTGCAG
66 TGCAGCTTGAAAATGCTTGTCATTGCAG
4723083 CAATGCAAGA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.41
Consensus pattern (93 bp):
TTTCCTTCTTTGTTGTACTTCAAACCATGCCTTAAAGTGCCTTTGACATATCTAAGCACTTTTTT
TGCAGCTTGAAAATGCTTGTCATTGCAG
Found at i:4725757 original size:33 final size:33
Alignment explanation
Indices: 4725711--4726047 Score: 155
Period size: 33 Copynumber: 9.7 Consensus size: 33
4725701 TTAACCGTTA
* *
4725711 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
** *
4725745 TCGGGGAATCAGCACTTAGCAACC-CCTTTCCCAT
1 TCGGGGAATCAGCACTTAGCAACCACCAAT--GAT
*
4725779 TCAAACATATGGCGGAATCAGCACTTAGCAACCACCAATGAA
1 T----C----GG-GGAATCAGCACTTAGCAACCACCAATGAT
*
4725821 TCGGGGAATCAGCACATAGCAACC-CC-----T
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
* * *
4725848 TGGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAAGT
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--T-GA-T
* *
4725889 AT-GGTGGGATCAGCACTTAGCAACCACCAATGAA
1 -TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
4725923 TCGGGGAATCAGCACTTAGCAACCCCCTTTATATTCAAGAT
1 TCGGGGAATCAGCACTTAGCAACCACC---A-A-T---GAT
* *
4725964 ACGGTGGAATCAGCACTTAGCAACCACCAATGAG
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
4725998 TCGGGGAATCAGCACTTAGCAACC-CC-----T
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
4726025 T-GGGGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
4726048 CCCTTCACAT
Statistics
Matches: 241, Mismatches: 24, Indels: 84
0.69 0.07 0.24
Matches are distributed among these distances:
26 22 0.09
27 23 0.10
28 1 0.00
31 1 0.00
32 7 0.03
33 80 0.33
34 16 0.07
35 1 0.00
36 2 0.01
37 2 0.01
38 5 0.02
39 3 0.01
41 8 0.03
42 47 0.20
43 20 0.08
44 3 0.01
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:4725857 original size:27 final size:27
Alignment explanation
Indices: 4725823--4725875 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
4725813 CCAATGAATC
4725823 GGGGAATCAGCACATAGCAACCCCTTG
1 GGGGAATCAGCACATAGCAACCCCTTG
*
4725850 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACATAGCAACCCCTT
4725876 TCACATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.25, T:0.17
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTTG
Found at i:4725919 original size:102 final size:103
Alignment explanation
Indices: 4725747--4725948 Score: 343
Period size: 102 Copynumber: 2.0 Consensus size: 103
4725737 CCAGTGATTC
*
4725747 GGGGAATCAGCACTTAGCAACCCCTTTCCCATTCAAACATATGGCGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAACATATGGCGGAATCAGCACTTAGCAACC
4725812 ACCAATGAATCGGGGAATCAGCACATAGCAACCCCTTG
66 ACCAATGAATCGGGGAATCAGCACATAGCAACCCCTTG
* * * *
4725850 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAA-GTATGGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAACATATGGCGGAATCAGCACTTAGCAACC
*
4725914 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCC
66 ACCAATGAATCGGGGAATCAGCACATAGCAACCCC
4725949 CTTTATATTC
Statistics
Matches: 93, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
102 58 0.62
103 35 0.38
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAACATATGGCGGAATCAGCACTTAGCAACC
ACCAATGAATCGGGGAATCAGCACATAGCAACCCCTTG
Found at i:4725945 original size:75 final size:74
Alignment explanation
Indices: 4725850--4726025 Score: 273
Period size: 75 Copynumber: 2.4 Consensus size: 74
4725840 CAACCCCTTG
* *
4725850 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAAG-TATGGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCTTT-ACA-TTAAAGATACGGTGGAATCAGCACTTAGCAACC
4725914 ACCAATGAATC
64 ACCAATGAATC
* *
4725925 GGGGAATCAGCACTTAGCAACCCCCTTTATATTCAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAA-CCCCTTTACATTAAAGATACGGTGGAATCAGCACTTAGCAACCA
*
4725990 CCAATGAGTC
65 CCAATGAATC
4726000 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
4726026 GGGGAATCAG
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
74 11 0.12
75 76 0.81
76 7 0.07
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (74 bp):
GGGGAATCAGCACTTAGCAACCCCTTTACATTAAAGATACGGTGGAATCAGCACTTAGCAACCAC
CAATGAATC
Found at i:4726020 original size:177 final size:177
Alignment explanation
Indices: 4725720--4726062 Score: 564
Period size: 177 Copynumber: 1.9 Consensus size: 177
4725710 ATCGGTGGAT
* * *
4725720 TCAGCACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCCTTTCCCATTCAAAC
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAC
*
4725785 ATATGGCGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACATAGCAACCCCTTG
66 ATACGGCGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACATAGCAACCCCTT-
*
4725850 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAAGTATGGTGGGA
130 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGTATGGTGGGA
*
4725898 TCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCCTTT-ATATTC-AA
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAA-CCCCTTTCACATTCAAA
* * * *
4725961 GATACGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTT
65 CATACGGCGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACATAGCAACCCCTT
4726026 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAA
130 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAA
4726063 ATACTTCGGC
Statistics
Matches: 154, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
176 36 0.23
177 62 0.40
178 49 0.32
179 7 0.05
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (177 bp):
TCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAC
ATACGGCGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACATAGCAACCCCTTG
GGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGTATGGTGGGA
Found at i:4726029 original size:26 final size:26
Alignment explanation
Indices: 4726000--4726049 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
4725990 CCAATGAGTC
4726000 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
4726026 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
4726050 CTTCACATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTT
Found at i:4728448 original size:22 final size:24
Alignment explanation
Indices: 4728405--4728448 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
4728395 GCATACAGCA
**
4728405 TCTGGATTGAACCAGCGTTTTTCT
1 TCTGGATTGAACCAGCCCTTTTCT
4728429 TCTGGA-TG-ACCAGCCCTTTT
1 TCTGGATTGAACCAGCCCTTTT
4728449 GCAATGCTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 2 0.11
24 6 0.33
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (24 bp):
TCTGGATTGAACCAGCCCTTTTCT
Found at i:4742665 original size:71 final size:71
Alignment explanation
Indices: 4742540--4742671 Score: 183
Period size: 71 Copynumber: 1.9 Consensus size: 71
4742530 TTTCTGTTTC
* ****
4742540 AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCAAGGTATTTTTAAATT
4742605 TTAAAA
66 TTAAAA
* ** *
4742611 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACCAAGGTATTTTTA
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCAAGGTATTTTTA
4742672 GTTTATGATT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
71 52 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (71 bp):
AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCAAGGTATTTTTAAATT
TTAAAA
Found at i:4742931 original size:72 final size:72
Alignment explanation
Indices: 4742721--4743147 Score: 604
Period size: 72 Copynumber: 5.8 Consensus size: 72
4742711 TAAGCCTTTT
* * **
4742721 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
*
4742785 GTAATTTT
65 GTAATTTC
* *
4742793 AATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
1 AATTTCTGTT-TT----CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
4742858 TGAGGTAATTTC
61 TGAGGTAATTTC
*
4742870 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
4742935 TATTTTC
66 TAATTTC
* *
4742942 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
4743007 GTAATTTC
65 GTAATTTC
* **
4743015 AATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
4743080 TAATTTT
66 TAATTTC
* *
4743087 AATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
1 AATTTCTGTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
4743148 ACCAAGGTAT
Statistics
Matches: 320, Mismatches: 25, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
71 2 0.01
72 141 0.44
73 70 0.22
75 41 0.13
76 6 0.02
77 60 0.19
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:4743023 original size:145 final size:146
Alignment explanation
Indices: 4742721--4744038 Score: 875
Period size: 145 Copynumber: 9.3 Consensus size: 146
4742711 TAAGCCTTTT
*
4742721 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
4742785 GTAATTTTAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
65 GTAATTTTAATTTCTGTTGTT---AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
4742850 GGACACGCTGAGGTAATTTC
127 GGACACGCTGAGGTAATTTC
* * **
4742870 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* * *
4742935 T-ATTTTCAATTTCTGCTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
66 TAATTTT-AATTTCTG-TTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
*
4742997 ACACGTTGAGGTAATTTC
129 ACACGCTGAGGTAATTTC
4743015 AATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
4743080 TAATTTTAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
66 TAATTTTAATTTCTGTTGTT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
* ** * *
4743145 CACACCAAGGTATTTTT
130 CACGCTGAGGTAATTTC
* * * * * **
4743162 AGTTTATGATTT--AAATT-GACTCATATTGCGAGAGGTGAGTT-A-----A-G---C-CT--TT
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*** ** * * ** * ** * * **
4743211 TAA-TTT-ATGTT-T-TTCAAAATCAACTCATATTGC-TAGAG-GTGAGTTGAGCCTCAG-GACA
66 TAATTTTAAT-TTCTGTTGTTAAAAAAATCA-ACT-CATATTGCGAGAAATGAG-TTGAGCCTCA
*** * * **
4743269 CGCTGA-GGTAATTTTAATTTC
127 -GGACACGCTGA-GGTAATTTC
** ***** * * * * * * **
4743290 TGTTGT-T-AAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACCAAG
1 AATT-TCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * * * ** *
4743353 GTATTTTTAGTTTATGAT-TT----AAATTGACTCATATTGCGAG--A-G-G-TGAG--TTA--A
65 GTAATTTTAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
* **
4743404 -GC-CT--TTTAATTT-
130 CACGCTGAGGTAATTTC
***
4743416 -ATGTT-T-TTCAAA--A-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * *
4743475 GT-ATTTTCAATTTCTGCTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
65 GTAATTTT-AATTTCTG-TTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
*
4743537 GACACGTTGAGGTAATTTC
128 GACACGCTGAGGTAATTTC
* * ** * *
4743556 -ATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * * * **
4743620 GTAATTTCAATTTCTGTT-TT-CAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGA
65 GTAATTTTAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
*
4743683 CACGCTGAGGTATTTTC
130 CACGCTGAGGTAATTTC
* ** * *
4743700 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * * * **
4743765 GTAATTTCAATTTCTGTT-TT-CAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGA
65 GTAATTTTAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
*
4743828 CACGCTGAGGTAATTTT
130 CACGCTGAGGTAATTTC
* * * **
4743845 AATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
1 AATTTCTGTT-TT----CAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGC
* *
4743910 TGAGGT-ATTTTCAATTTCTGCTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
61 TGAGGTAATTTT-AATTTCTG-TTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
* ** *
4743972 TCAAGACACATTGAGGTATTTTC
124 TCAGGACACGCTGAGGTAATTTC
*
4743995 AAATTCTACT-TTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTT
1 -AATT-T-CTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTT
4744039 ACCTTTTAAG
Statistics
Matches: 952, Mismatches: 142, Indels: 154
0.76 0.11 0.12
Matches are distributed among these distances:
121 4 0.00
122 47 0.05
123 4 0.00
125 6 0.01
126 18 0.02
127 27 0.03
128 22 0.02
129 10 0.01
130 29 0.03
131 8 0.01
133 4 0.00
134 2 0.00
135 4 0.00
136 1 0.00
137 4 0.00
138 2 0.00
139 9 0.01
140 9 0.01
141 6 0.01
142 4 0.00
143 3 0.00
144 90 0.09
145 360 0.38
146 13 0.01
147 60 0.06
148 18 0.02
149 119 0.12
150 58 0.06
151 6 0.01
152 3 0.00
153 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (146 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTTAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGAC
ACGCTGAGGTAATTTC
Found at i:4743378 original size:199 final size:197
Alignment explanation
Indices: 4743015--4743758 Score: 950
Period size: 199 Copynumber: 3.7 Consensus size: 197
4743005 AGGTAATTTC
*
4743015 AATTTCTG-TTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
4743079 GTAATTTTAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
65 GTAATTTTAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
4743144 ACACACCAAGGTATTTTTAGTTTATGATTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
130 ACACACCAAGGTATTTTTAGTTTATGATTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
4743209 TTT
195 TTT
4743212 AATTTATGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTATGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* *
4743277 TAATTTTAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG
66 TAATTTTAATTTCTGTTGTT--AAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
*
4743342 GGCACACCAAGGTATTTTTAGTTTATGATTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
129 GACACACCAAGGTATTTTTAGTTTATGATTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
4743407 TTTT
194 TTTT
4743411 AATTTATGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTATGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* * *
4743476 T-ATTTTCAATTTCTGCTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
66 TAATTTT-AATTTCTG-TTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
**** * * * * *
4743537 GACACGTTGAGGTAATTTCA-TTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
129 GACACACCAAGGTATTTTTAGTTTATGATT-T--AAATT-GACTCATATTGCGAG--A-G-G-TG
* *
4743601 AGCCTCAAGACACGTTGAGGT
185 AG--TTAAG-C-C-TT---TT
*
4743622 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 AATTT--A--TGT-TTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
* *
4743687 CTGAGGT-ATTTTCAATTTCTGCTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
60 CTGAGGTAATTTT-AATTTCTG-TTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
*
4743748 CCTCAAGACAC
123 CCTCAGGACAC
4743759 GTTGAGGTAA
Statistics
Matches: 497, Mismatches: 22, Indels: 36
0.90 0.04 0.06
Matches are distributed among these distances:
194 7 0.01
195 50 0.10
197 79 0.16
198 28 0.06
199 185 0.37
200 3 0.01
201 1 0.00
202 1 0.00
203 4 0.01
205 4 0.01
206 1 0.00
207 1 0.00
208 2 0.00
211 6 0.01
213 1 0.00
215 2 0.00
216 9 0.02
217 113 0.23
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (197 bp):
AATTTATGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTTAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
CACACCAAGGTATTTTTAGTTTATGATTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTT
TT
Found at i:4743571 original size:72 final size:73
Alignment explanation
Indices: 4743411--4744026 Score: 859
Period size: 72 Copynumber: 8.5 Consensus size: 73
4743401 TAAGCCTTTT
* * * ** *
4743411 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
4743475 GTATTTTC
66 GTAATTTC
*
4743483 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
4743548 GTAATTTC
66 GTAATTTC
* *
4743556 -ATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
4743620 GTAATTTC
66 GTAATTTC
* ** *
4743628 AATTTCTG-TTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
4743692 GTATTTTC
66 GTAATTTC
*
4743700 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
4743765 GTAATTTC
66 GTAATTTC
* ** *
4743773 AATTTCTG-TTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
4743837 GTAATTTT
66 GTAATTTC
* * *
4743845 AATTTCTG-TTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACG
1 AATTTCTGCTT-TT----CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
4743909 CTGAGGTATTTTC
61 CTGAGGTAATTTC
**
4743922 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAG
1 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
4743987 GTATTTTC
66 GTAATTTC
* *
4743995 AAATTCTACTTTTTC-AAA-TCAACTCATATTGC
1 AATTTCTGC-TTTTCAAAATTCAACTCATATTGC
4744027 AAGAGGTGAG
Statistics
Matches: 492, Mismatches: 42, Indels: 20
0.89 0.08 0.04
Matches are distributed among these distances:
72 234 0.48
73 188 0.38
74 5 0.01
77 63 0.13
78 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (73 bp):
AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
GTAATTTC
Found at i:4743804 original size:217 final size:216
Alignment explanation
Indices: 4743411--4744026 Score: 970
Period size: 217 Copynumber: 2.8 Consensus size: 216
4743401 TAAGCCTTTT
*
4743411 AATTTATGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
4743476 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
4743541 CGTTGAGGTAATTTC-ATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
130 CGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
*
4743605 TCAAGACACGTTGAGGTAATTTC
194 TCAAGACACGCTGAGGTAATTTC
4743628 AATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
4743693 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* **
4743758 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGCCT
130 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* *
4743823 CAGGACACGCTGAGGTAATTTT
195 CAAGACACGCTGAGGTAATTTC
* * **
4743845 AATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
1 AATTTCTGTT-TT-----CAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGC
4743910 TGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
60 TGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* *
4743975 AGACACATTGAGGTATTTTCAAATTCTACT-TTTTC-AAA-TCAACTCATATTGC
125 AGACACGTTGAGGTAATTTC-AATT-T-CTGTTTTCAAAATTCAACTCATATTGC
4744027 AAGAGGTGAG
Statistics
Matches: 374, Mismatches: 14, Indels: 17
0.92 0.03 0.04
Matches are distributed among these distances:
216 9 0.02
217 201 0.54
218 9 0.02
222 136 0.36
223 11 0.03
224 6 0.02
225 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (216 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
AAGACACGCTGAGGTAATTTC
Found at i:4746622 original size:24 final size:24
Alignment explanation
Indices: 4746557--4746625 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
4746547 TGATATATGT
** *
4746557 ATATAGAAATATTTACAAATATTAA
1 ATATA-AAATATTTATTAATTTTAA
**
4746582 ATAATAAAAT-TAGATTAATTTTAA
1 AT-ATAAAATATTTATTAATTTTAA
4746606 ATATAAAATATTTATTAATT
1 ATATAAAATATTTATTAATT
4746626 AAATAAAATA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 7 0.20
24 19 0.54
25 6 0.17
26 3 0.09
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (24 bp):
ATATAAAATATTTATTAATTTTAA
Found at i:4763675 original size:42 final size:42
Alignment explanation
Indices: 4763616--4763699 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
4763606 GGGTGCCAGC
4763616 CTTAGCCTACATACTTATAGACGAAGGATTAGGTCCTCTGCT
1 CTTAGCCTACATACTTATAGACGAAGGATTAGGTCCTCTGCT
4763658 CTTAGCCTACATACTTATAGACGAAGGATTAGGTCCTCTGCT
1 CTTAGCCTACATACTTATAGACGAAGGATTAGGTCCTCTGCT
4763700 ACGGACCCGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (42 bp):
CTTAGCCTACATACTTATAGACGAAGGATTAGGTCCTCTGCT
Found at i:4764424 original size:29 final size:29
Alignment explanation
Indices: 4764391--4764507 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
4764381 TGTAATTTTT
*
4764391 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
4764420 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
4764450 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
4764479 GGAAAAGTTTAGGTGTCAAAATGCAATTT
1 AGAAAA-TTTAGG-GTTAAAATGAAATTT
4764508 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 16 0.22
30 54 0.75
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:4764446 original size:30 final size:30
Alignment explanation
Indices: 4764406--4764507 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
4764396 ATTTAGGATT
*
4764406 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
4764436 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* *
4764466 AAAATGAAATTT-AGGAAAAGTTTAGGTGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
4764496 AAAATGCAATTT
1 AAAATGAAATTT
4764508 TTATTTTTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:4764530 original size:16 final size:17
Alignment explanation
Indices: 4764505--4764540 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
4764495 CAAAATGCAA
4764505 TTTTTATTTTTT-AAAT
1 TTTTTATTTTTTGAAAT
*
4764521 TTTTTTTTTTTTGAAAT
1 TTTTTATTTTTTGAAAT
4764538 TTT
1 TTT
4764541 GAAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTTGAAAT
Found at i:4764531 original size:17 final size:17
Alignment explanation
Indices: 4764505--4764540 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
4764495 CAAAATGCAA
*
4764505 TTTTTATTTTTTAAATT
1 TTTTTATTTTTGAAATT
*
4764522 TTTTTTTTTTTGAAATT
1 TTTTTATTTTTGAAATT
4764539 TT
1 TT
4764541 GAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTGAAATT
Found at i:4768063 original size:26 final size:26
Alignment explanation
Indices: 4768032--4768081 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
4768022 AAATGTGAAG
4768032 GGGGTTGCTAAGTGCTGATTCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAA
4768058 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
4768082 GACTCATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:4768102 original size:33 final size:33
Alignment explanation
Indices: 4768060--4768370 Score: 175
Period size: 33 Copynumber: 8.7 Consensus size: 33
4768050 TTCCCCAAGG
4768060 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
4768093 GGTTGCTAAGTGCTGATTCCACCGTATCTTGAATATAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A-C-T-CAT-T---GGT
*
4768135 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * * *
4768168 GGTTGCTAAGTGCTGATCCCACCATACTTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-GAC--T-CAT-TG---GT
*
4768210 GGTTGCTAAGTGCTGATT-CCC--C-CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
4768237 GGTTGCTATGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * *
4768270 GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-GA-C--T-CAT-TG---GT
* *
4768313 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
*
4768346 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
4768371 TAACGGTTAA
Statistics
Matches: 216, Mismatches: 27, Indels: 69
0.69 0.09 0.22
Matches are distributed among these distances:
27 17 0.08
28 4 0.02
31 3 0.01
32 2 0.01
33 81 0.38
34 11 0.05
35 3 0.01
36 4 0.02
37 6 0.03
38 7 0.03
39 5 0.02
40 5 0.02
41 5 0.02
42 42 0.19
43 21 0.10
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
Found at i:4768181 original size:75 final size:75
Alignment explanation
Indices: 4768056--4768231 Score: 275
Period size: 75 Copynumber: 2.3 Consensus size: 75
4768046 CTGATTCCCC
* *
4768056 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTA-T
1 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCATACT
*
4768120 CTTGAATAT-A
66 -TTAAATATGA
*
4768130 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATAC
1 AA-GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCATAC
*
4768195 TTTAAATGTGA
65 TTTAAATATGA
4768206 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
4768232 CAAGGGGTTG
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
74 2 0.02
75 88 0.94
76 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCATACT
TTAAATATGA
Found at i:4768244 original size:27 final size:27
Alignment explanation
Indices: 4768206--4768258 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
4768196 TTAAATGTGA
4768206 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
*
4768233 AAGGGGTTGCTATGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
4768259 GATTCATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:4768257 original size:102 final size:103
Alignment explanation
Indices: 4768133--4768334 Score: 370
Period size: 102 Copynumber: 2.0 Consensus size: 103
4768123 GAATATAAAG
4768133 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATA-CTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
4768197 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
* *
4768235 GGGGTTGCTATGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
*
4768300 TGAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
4768335 GAATCACTGG
Statistics
Matches: 96, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
102 59 0.61
103 37 0.39
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (103 bp):
GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:4772894 original size:38 final size:38
Alignment explanation
Indices: 4772851--4772926 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
4772841 GTTTATTTAG
*
4772851 GCTTCTTGAGGGACATAAGCTGCAATATTGCTGTCAAA
1 GCTTCTTGAGGGACATAAGCTACAATATTGCTGTCAAA
4772889 GCTTCTTGAGGGACATAAGCTACAATATTGCTGTCAAA
1 GCTTCTTGAGGGACATAAGCTACAATATTGCTGTCAAA
4772927 AGGGTAACTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (38 bp):
GCTTCTTGAGGGACATAAGCTACAATATTGCTGTCAAA
Found at i:4775536 original size:5 final size:5
Alignment explanation
Indices: 4775526--4775551 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
4775516 TGAGCATTCG
4775526 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
4775552 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:4775649 original size:5 final size:5
Alignment explanation
Indices: 4775641--4775665 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
4775631 GAGATGGAAT
4775641 TCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGAA TCGAA
4775666 AATTTTCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
TCGAA
Found at i:4775715 original size:114 final size:114
Alignment explanation
Indices: 4775527--4776025 Score: 962
Period size: 114 Copynumber: 4.3 Consensus size: 114
4775517 GAGCATTCGA
4775527 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
1 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
4775592 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
66 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
4775641 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
1 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
4775706 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
66 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
4775755 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
1 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
4775820 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
66 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
4775869 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
1 TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
4775934 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
66 TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
4775983 TCGAATCGAATCGAATCGAATCGAATATATTTGTTCGAGTTAA
1 TCGAATCGAATCGAATCGAATCGAA-A-A-TT-TTCGAGTTAA
4776026 ATTTTAAAAA
Statistics
Matches: 381, Mismatches: 0, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
114 367 0.96
115 1 0.00
116 1 0.00
117 2 0.01
118 10 0.03
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (114 bp):
TCGAATCGAATCGAATCGAATCGAAAATTTTCGAGTTAATCGAGTTCTCGAATCTCATTTTATCA
TCCTAACTTTATTTGAAGTTTTCTCGAATCGAGTCGAGTGAGATGGAAT
Found at i:4775763 original size:5 final size:5
Alignment explanation
Indices: 4775755--4775779 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
4775745 GAGATGGAAT
4775755 TCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGAA TCGAA
4775780 AATTTTCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
TCGAA
Found at i:4775877 original size:5 final size:5
Alignment explanation
Indices: 4775869--4775893 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
4775859 GAGATGGAAT
4775869 TCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGAA TCGAA
4775894 AATTTTCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
TCGAA
Found at i:4775991 original size:5 final size:5
Alignment explanation
Indices: 4775983--4776008 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
4775973 GAGATGGAAT
4775983 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
4776009 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:4776008 original size:26 final size:26
Alignment explanation
Indices: 4775957--4776008 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
4775947 TGAAGTTTTC
* * *
4775957 TCGAATCGAGTCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
4775983 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
4776009 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:4779738 original size:15 final size:15
Alignment explanation
Indices: 4779718--4779761 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4779708 CTCTCATCTG
*
4779718 CATCATCATCTTTAT
1 CATCATCATCTTCAT
*
4779733 CATCATCCTCTTCAT
1 CATCATCATCTTCAT
* *
4779748 CAACACCATCTTCA
1 CATCATCATCTTCA
4779762 GTGCCAAGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.27, C:0.36, G:0.00, T:0.36
Consensus pattern (15 bp):
CATCATCATCTTCAT
Found at i:4786573 original size:32 final size:31
Alignment explanation
Indices: 4786533--4786595 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 31
4786523 CGATAAGAAA
4786533 CAAAGTCAGTAGAAAACTTACTCAGAAAGAG
1 CAAAGTCAGTAGAAAACTTACTCAGAAAGAG
4786564 NCAAAGTCAGTAGAAAACTTACTCAGAAAGAG
1 -CAAAGTCAGTAGAAAACTTACTCAGAAAGAG
4786596 TGTTCCATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (31 bp):
CAAAGTCAGTAGAAAACTTACTCAGAAAGAG
Found at i:4789407 original size:18 final size:19
Alignment explanation
Indices: 4789386--4789422 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
4789376 AATAGTGCCC
4789386 AACACAAAAAGCAA-GAAA
1 AACACAAAAAGCAATGAAA
*
4789404 AACACCAAAAGCAATGAAA
1 AACACAAAAAGCAATGAAA
4789423 GTTGCCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.68, C:0.19, G:0.11, T:0.03
Consensus pattern (19 bp):
AACACAAAAAGCAATGAAA
Found at i:4789732 original size:22 final size:22
Alignment explanation
Indices: 4789704--4789750 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
4789694 AAGATTGAAC
4789704 AGCTATAAATATTAAACAAGAA
1 AGCTATAAATATTAAACAAGAA
4789726 AGCTATAAATATTAAACAAGAA
1 AGCTATAAATATTAAACAAGAA
4789748 AGC
1 AGC
4789751 AAGTACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.21
Consensus pattern (22 bp):
AGCTATAAATATTAAACAAGAA
Found at i:4795949 original size:21 final size:20
Alignment explanation
Indices: 4795923--4795969 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
4795913 TTTATTTAAA
* **
4795923 TATAAAATATTTATTTTATAT
1 TATAAAAAATTTAAATTAT-T
4795944 TATAAAAAATTTAAATTATT
1 TATAAAAAATTTAAATTATT
4795964 TATAAA
1 TATAAA
4795970 TTAAATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAAAAAATTTAAATTATT
Found at i:4804093 original size:48 final size:46
Alignment explanation
Indices: 4804021--4804233 Score: 205
Period size: 48 Copynumber: 4.5 Consensus size: 46
4804011 CAACCGCCGC
* *
4804021 CGCCTCCGAAAGAGACGCAGACGCTGTTTATGCAACAGCCACCGTCT
1 CGCCTCCGAAAGAAACGCAAACGCTGTTTATGCAACAGCCACC-TCT
* * **
4804068 GCGCCTCCGAAAGAGACGCAAACGCTGTTTATGCAACCGCCGGCTC-
1 -CGCCTCCGAAAGAAACGCAAACGCTGTTTATGCAACAGCCACCTCT
* * * * * * **
4804114 CGCCTCCTAAGGAAACGCAGACGTTGTTTATGCAGCCGCCGGCTCCTT
1 CGCCTCCGAAAGAAACGCAAACGCTGTTTATGCAACAGCCACCT-C-T
* *
4804162 CGCCTCCGAAGGAAACGCAAACGCTGTTTATGCAACCACCGGCACCTC-
1 CGCCTCCGAAAGAAACGCAAACGCTGTTTATGCAA-CA--GCCACCTCT
4804210 CGCCTCCGAAAGAAACGCAAACGC
1 CGCCTCCGAAAGAAACGCAAACGC
4804234 AAACGCTGTT
Statistics
Matches: 140, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
45 38 0.27
46 1 0.01
47 2 0.01
48 93 0.66
49 1 0.01
50 1 0.01
51 4 0.03
ACGTcount: A:0.25, C:0.35, G:0.23, T:0.16
Consensus pattern (46 bp):
CGCCTCCGAAAGAAACGCAAACGCTGTTTATGCAACAGCCACCTCT
Found at i:4804185 original size:54 final size:54
Alignment explanation
Indices: 4804126--4804303 Score: 251
Period size: 54 Copynumber: 3.4 Consensus size: 54
4804116 CCTCCTAAGG
* * * * *
4804126 AAACGCAGACGTTGTTTATGCAGCCGCCGGCTCCTTCGCCTCCG-AAG----G-
1 AAACGCAAACGCTGTTTATGCAGCCACCGGCACCTCCGCCTCCGAAAGAAACGC
*
4804174 AAACGCAAACGCTGTTTATGCAACCACCGGCACCTCCGCCTCCGAAAGAAACGC
1 AAACGCAAACGCTGTTTATGCAGCCACCGGCACCTCCGCCTCCGAAAGAAACGC
*
4804228 AAACGCAAACGCTGTTTATGCAGCCACCGGCGCCTCCGCCTCCGAAAGAAACGC
1 AAACGCAAACGCTGTTTATGCAGCCACCGGCACCTCCGCCTCCGAAAGAAACGC
4804282 AAACGCAAACGCTGTTTATGCA
1 AAACGCAAACGCTGTTTATGCA
4804304 ATCGCCGCCG
Statistics
Matches: 116, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
48 38 0.33
49 3 0.03
53 1 0.01
54 74 0.64
ACGTcount: A:0.28, C:0.34, G:0.22, T:0.16
Consensus pattern (54 bp):
AAACGCAAACGCTGTTTATGCAGCCACCGGCACCTCCGCCTCCGAAAGAAACGC
Found at i:4804281 original size:102 final size:93
Alignment explanation
Indices: 4804005--4804287 Score: 279
Period size: 93 Copynumber: 3.0 Consensus size: 93
4803995 ACAGGCGTTT
* * * * **
4804005 TTTATGCAACCGCC-G--CCGCCTCCGAAA-GAGACGCAGACGCTGTTTATGCA-ACAGCCACCG
1 TTTATGCAACCACCGGCTCCGCCTCC-AAAGGAAACGCAAACGCTGTTTATGCAGCCA-CCGGCG
* * *
4804065 TCTGCGCCTCCGAAAGAGACGCAAACGCTG
64 CCTCCGCCTCCGAAAGAAACGCAAACGCTG
* * * * * *
4804095 TTTATGCAACCGCCGGCTCCGCCTCCTAAGGAAACGCAGACGTTGTTTATGCAGCCGCCGGCTCC
1 TTTATGCAACCACCGGCTCCGCCTCCAAAGGAAACGCAAACGCTGTTTATGCAGCCACCGGCGCC
* *
4804160 TTCGCCTCCGAAGGAAACGCAAACGCTG
66 TCCGCCTCCGAAAGAAACGCAAACGCTG
4804188 TTTATGCAACCACCGGCACCTCCGCCTCCGAAAGAAACGCAAACGCAAACGCTGTTTATGCAGCC
1 TTTATGCAACCACCGG---CTCCGCCTCC-AAAG----G-AAACGCAAACGCTGTTTATGCAGCC
4804253 ACCGGCGCCTCCGCCTCCGAAAGAAACGCAAACGC
57 ACCGGCGCCTCCGCCTCCGAAAGAAACGCAAACGC
4804288 AAACGCTGTT
Statistics
Matches: 159, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
90 14 0.09
91 1 0.01
92 2 0.01
93 73 0.46
94 1 0.01
96 10 0.06
97 3 0.02
101 1 0.01
102 54 0.34
ACGTcount: A:0.25, C:0.36, G:0.23, T:0.16
Consensus pattern (93 bp):
TTTATGCAACCACCGGCTCCGCCTCCAAAGGAAACGCAAACGCTGTTTATGCAGCCACCGGCGCC
TCCGCCTCCGAAAGAAACGCAAACGCTG
Found at i:4809419 original size:18 final size:17
Alignment explanation
Indices: 4809402--4809451 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 17
4809392 TGAATCACCA
4809402 AAAGTTCCTGAGTTACC
1 AAAGTTCCTGAGTTACC
* * *
4809419 AAAG--CCAGAATTGCC
1 AAAGTTCCTGAGTTACC
4809434 TAAAGTTCCTGAGTTACC
1 -AAAGTTCCTGAGTTACC
4809452 TAAGCCAGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 5
0.69 0.17 0.14
Matches are distributed among these distances:
15 8 0.33
16 4 0.17
17 4 0.17
18 8 0.33
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (17 bp):
AAAGTTCCTGAGTTACC
Found at i:4809464 original size:33 final size:33
Alignment explanation
Indices: 4809303--4809874 Score: 193
Period size: 33 Copynumber: 17.3 Consensus size: 33
4809293 TGAAGCACCA
* *
4809303 AAAGTTCCGGAGTTACCAAAGCCAGAATTTCCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * *
4809336 AAAGTTCCTGAAG-TGCCCAAGCCTGAATT-ACT
1 AAAGTTCCTG-AGTTACCAAAGCCAGAATTGCCT
* * * * * ** *
4809368 CAAAGCTCCCGAGTTGCCAAAACCTGAATCACCA
1 -AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
4809402 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
*
4809435 AAAGTTCCTGAGTTACCTAAGCCAGAATTGCC-
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * * *
4809467 CAAG--CCTGAATTACCCAAAGCTCCCGAGTTTCC-
1 AAAGTTCCTGAGTTA-CCAAAG--CCAGAATTGCCT
* * * * * * *
4809500 AAA--ACTTGAATCACCAAAAGTTCCTGAGTTACC-
1 AAAGTTCCTGAGTTACC-AAAG--CCAGAATTGCCT
* * * * * **
4809533 AAA-AT-CAGAATTGCCTAAAGTTCCTGAGGTGCCT
1 AAAGTTCCTGAGTTACC-AAAG--CCAGAATTGCCT
* * * * *
4809567 -AAG--CCGGAATTGCCCAAAGCTCCTGAATTGCCA
1 AAAGTTCCTGAGTT-ACCAAAG--CCAGAATTGCCT
* * *
4809600 AAAATTCCTGAGTTAACAAAACCAGAATTGCCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * *
4809633 AAAATTCCTGAGGTACCAAAACCAGAATTGCCC
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
*** * * * * *
4809666 AAAGCGACTGAGTTGCCAAAACCTGAATTACCA
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * * *
4809699 AAAGTTCCAGAGGTGCCTAAGCCAGAATTGCCA
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * ** *
4809732 AAAGCTCCTGAATTACCAAAACCTCAATTACCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * *
4809765 AAAATTCCCGAGTTAACAAAACCAGAATTGCCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * *
4809798 AAAGTTCCAGAGGTACCGAAA-CCAGAATTGCCC
1 AAAGTTCCTGAGTTACC-AAAGCCAGAATTGCCT
** * * * * *
4809831 AAAACTCCTGAGCTGCCAAAACCTGAATTACCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
4809864 AAAGTTCCTGA
1 AAAGTTCCTGA
4809875 ATTGCCTAAC
Statistics
Matches: 410, Mismatches: 110, Indels: 38
0.73 0.20 0.07
Matches are distributed among these distances:
30 8 0.02
31 5 0.01
32 12 0.03
33 365 0.89
34 10 0.02
35 4 0.01
36 6 0.01
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (33 bp):
AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
Found at i:4809487 original size:114 final size:114
Alignment explanation
Indices: 4809349--4809669 Score: 419
Period size: 114 Copynumber: 2.8 Consensus size: 114
4809339 GTTCCTGAAG
* *
4809349 TGCCCAAGCCTGAATTACTCAAAGCTCCCGAGTTGCCAAAACCTGAATCACCAAAAGTTCCTGAG
1 TGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTACCAAAACCTGAATCACCAAAAGTTCCTGAG
* *
4809414 TTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGTTACCTAAGCCAGAAT
66 TTACCAAAACCAGAATTGCCTAAAGTTCCTGAGGTACCTAAGCCAGAAT
* *
4809463 TGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTTCCAAAACTTGAATCACCAAAAGTTCCTGAG
1 TGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTACCAAAACCTGAATCACCAAAAGTTCCTGAG
* * *
4809528 TTACCAAAATCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAAT
66 TTACCAAAACCAGAATTGCCTAAAGTTCCTGAGGTACCTAAGCCAGAAT
* * ** * * * **
4809577 TGCCCAAAGCTCCTGAATTGCCAAAAATTCCTGAGTTAACAAAACCAGAATTGCCTAAAA-TTCC
1 TGCCC-AAG--CCTGAATTACCCAAAGCTCCCGAGTTACCAAAACCTGAATCACC-AAAAGTTCC
* *
4809641 TGAGGTACCAAAACCAGAATTGCCCAAAG
62 TGAGTTACCAAAACCAGAATTGCCTAAAG
4809670 CGACTGAGTT
Statistics
Matches: 181, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
114 111 0.61
115 3 0.02
117 63 0.35
118 4 0.02
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.22
Consensus pattern (114 bp):
TGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTACCAAAACCTGAATCACCAAAAGTTCCTGAG
TTACCAAAACCAGAATTGCCTAAAGTTCCTGAGGTACCTAAGCCAGAAT
Found at i:4809613 original size:84 final size:84
Alignment explanation
Indices: 4809513--4809833 Score: 255
Period size: 84 Copynumber: 3.9 Consensus size: 84
4809503 ACTTGAATCA
* * * * * * *
4809513 CCAAAAGTTCCTGAGTTACCAAAATCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAATT
1 CCAAAAATTCCTGAGTTACCAAAACCAGAATTGCCTAAAATTCCTGAGGTACCAAAACCAGAATT
**
4809578 GCCCAAAGCTCCTGAATTG
66 GCCCAAAGCGACTGAATTG
*
4809597 CCAAAAATTCCTGAGTTAACAAAACCAGAATTGCCTAAAATTCCTGAGGTACCAAAACCAGAATT
1 CCAAAAATTCCTGAGTTACCAAAACCAGAATTGCCTAAAATTCCTGAGGTACCAAAACCAGAATT
*
4809662 GCCCAAAGCGACTGAGTTG
66 GCCCAAAGCGACTGAATTG
* ** * * ** *
4809681 CC-AAAA--CCTGAATTACCAAAAGTTCCAGAGGTGCCT--AA-GCCAGAATTGCCAAAAGCTCC
1 CCAAAAATTCCTGAGTTACCAAAA---CCAGAATTGCCTAAAATTCCTGAGGTACCAAAA---CC
* * * * *
4809740 TGAATT-ACCAAAAC--CTCAATTA
60 AGAATTGCCCAAAGCGACTGAATTG
* * * * * *
4809762 CCTAAAATTCCCGAGTTAACAAAACCAGAATTGCCTAAAGTTCCAGAGGTACCGAAACCAGAATT
1 CCAAAAATTCCTGAGTTACCAAAACCAGAATTGCCTAAAATTCCTGAGGTACCAAAACCAGAATT
4809827 GCCCAAA
66 GCCCAAA
4809834 ACTCCTGAGC
Statistics
Matches: 185, Mismatches: 39, Indels: 28
0.73 0.15 0.11
Matches are distributed among these distances:
81 48 0.26
82 11 0.06
83 11 0.06
84 115 0.62
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.21
Consensus pattern (84 bp):
CCAAAAATTCCTGAGTTACCAAAACCAGAATTGCCTAAAATTCCTGAGGTACCAAAACCAGAATT
GCCCAAAGCGACTGAATTG
Found at i:4809661 original size:66 final size:66
Alignment explanation
Indices: 4809591--4809874 Score: 264
Period size: 66 Copynumber: 4.3 Consensus size: 66
4809581 CAAAGCTCCT
* * *
4809591 GAATTGCCAAAAATTCCTGAGTTAACAAAACCAGAATTGCCTAAAATTCCTGAGGTACCAAAACC
1 GAATTGCCAAAAGTTCCTGAGTTACCAAAACCAGAATTACCTAAAATTCCTGAGGTACCAAAACC
4809656 A
66 A
* *** * * * * * *
4809657 GAATTGCCCAAAGCGACTGAGTTGCCAAAACCTGAATTACC-AAAAGTTCCAGAGGTGCCTAAGC
1 GAATTGCCAAAAGTTCCTGAGTTACCAAAACCAGAATTACCTAAAA-TTCCTGAGGTACCAAAAC
4809721 CA
65 CA
* * ** * * *
4809723 GAATTGCCAAAAGCTCCTGAATTACCAAAACCTCAATTACCTAAAATTCCCGAGTTAACAAAACC
1 GAATTGCCAAAAGTTCCTGAGTTACCAAAACCAGAATTACCTAAAATTCCTGAGGTACCAAAACC
4809788 A
66 A
* * * * * * * * *
4809789 GAATTGCCTAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCCTGAGCTGCCAAAACC
1 GAATTGCCAAAAGTTCCTGAGTTACCAAAACCAGAATTACCTAAAATTCCTGAGGTACCAAAACC
*
4809854 T
66 A
* *
4809855 GAATTACCTAAAGTTCCTGA
1 GAATTGCCAAAAGTTCCTGA
4809875 ATTGCCTAAC
Statistics
Matches: 173, Mismatches: 43, Indels: 4
0.79 0.20 0.02
Matches are distributed among these distances:
65 4 0.02
66 165 0.95
67 4 0.02
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.20
Consensus pattern (66 bp):
GAATTGCCAAAAGTTCCTGAGTTACCAAAACCAGAATTACCTAAAATTCCTGAGGTACCAAAACC
A
Found at i:4809778 original size:99 final size:99
Alignment explanation
Indices: 4809675--4809880 Score: 261
Period size: 99 Copynumber: 2.1 Consensus size: 99
4809665 CAAAGCGACT
* * * *
4809675 GAGTTGCCAAAACCTGAATTACCAAAAGTTCCAGAGGTGCCTAAGCCAGAATTG-CCAAAAGCTC
1 GAGTTGCCAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAA-CTC
*
4809739 CTGAATTACCAAAACCTCAATTACCTAAAATTCCC
65 CTGAACTACCAAAACCTCAATTACCTAAAATTCCC
** * *
4809774 GAGTTAACAAAACCAGAATTGCCTAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCC
1 GAGTTGCCAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCC
* * * * *
4809839 TGAGCTGCCAAAACCTGAATTACCTAAAGTTCCT
66 TGAACTACCAAAACCTCAATTACCTAAAATTCCC
*
4809873 GAATTGCC
1 GAGTTGCC
4809881 TAACATGCCG
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
99 83 0.93
100 6 0.07
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.21
Consensus pattern (99 bp):
GAGTTGCCAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCC
TGAACTACCAAAACCTCAATTACCTAAAATTCCC
Found at i:4815048 original size:33 final size:33
Alignment explanation
Indices: 4814999--4815079 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
4814989 AGAAATCCCG
* *
4814999 AAACCTGAAATACCTAAAATGCCCGAGTTGCCA
1 AAACCTGAATTGCCTAAAATGCCCGAGTTGCCA
* * *
4815032 AAACCTGAATTGCCTAAAGTTCCGGAGTTGCCA
1 AAACCTGAATTGCCTAAAATGCCCGAGTTGCCA
* *
4815065 AAGCCCGAATTGCCT
1 AAACCTGAATTGCCT
4815080 GAGGTCCCCG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (33 bp):
AAACCTGAATTGCCTAAAATGCCCGAGTTGCCA
Found at i:4815331 original size:18 final size:17
Alignment explanation
Indices: 4815314--4815363 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 17
4815304 TGAATCACCA
4815314 AAAGTTCCTGAGTTACC
1 AAAGTTCCTGAGTTACC
* * *
4815331 AAAG--CCAGAATTGCC
1 AAAGTTCCTGAGTTACC
4815346 TAAAGTTCCTGAGTTACC
1 -AAAGTTCCTGAGTTACC
4815364 TAAGCCAGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 5
0.69 0.17 0.14
Matches are distributed among these distances:
15 8 0.33
16 4 0.17
17 4 0.17
18 8 0.33
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (17 bp):
AAAGTTCCTGAGTTACC
Found at i:4815376 original size:33 final size:33
Alignment explanation
Indices: 4815215--4815753 Score: 165
Period size: 33 Copynumber: 16.3 Consensus size: 33
4815205 TGAAGCACCA
*
4815215 AAAGTT-CTGGAGTTACCAAAGCCAGAATTTCCT
1 AAAGTTCCT-GAGTTACCAAAGCCAGAATTGCCT
* * * *
4815248 AAAGTTCCTGAAG-TGCCTAAGCCTGAATT-ACT
1 AAAGTTCCTG-AGTTACCAAAGCCAGAATTGCCT
* * * * * ** *
4815280 CAAAGCTCCCGAGTTGCCAAAACCTGAATCACCA
1 -AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
4815314 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
*
4815347 AAAGTTCCTGAGTTACCTAAGCCAGAATTGCC-
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * *
4815379 CAAG--CCTGAATTACCCAAAGCTCCCGAGTTGCC-
1 AAAGTTCCTGAGTTA-CCAAAG--CCAGAATTGCCT
* * * * * * *
4815412 AAA--ACTTGAATCACCAAAAGTTCCTGAGTTACC-
1 AAAGTTCCTGAGTTACC-AAAG--CCAGAATTGCCT
* * * * * **
4815445 AAA-AT-CAGAATTGCCTAAAGTTCATGAGGTGCCT
1 AAAGTTCCTGAGTTACC-AAAG-CCA-GAATTGCCT
* * * * *
4815479 -AAG--CCGGAATTGCCCAAAGCTCCTGAATTGCCA
1 AAAGTTCCTGAGTT-ACCAAAG--CCAGAATTGCCT
* * * *
4815512 AAAATTCCTGAGGTACCAAAACCAGAATTGCCC
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
*** * * * * *
4815545 AAAGCGACTGAGTTGCCAAAACCTGAATTACCA
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * *
4815578 AAAGTTCCTGAGGTGCCTAAGCCAGAATTGCCA
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * ** *
4815611 AAAGCTCCTGAATTACCAAAACCTCAATTACCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * * *
4815644 AAAATTCCCGAGTTAACAAAACCAGAATTGCCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
* * *
4815677 AAAGTTCCAGAGGTACCGAAA-CCAGAATTGCCC
1 AAAGTTCCTGAGTTACC-AAAGCCAGAATTGCCT
** * * * * *
4815710 AAAACTCCTGAGCTGCCAAAACCTGAATTACCT
1 AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
4815743 AAAGTTCCTGA
1 AAAGTTCCTGA
4815754 ATTGCCTAAC
Statistics
Matches: 378, Mismatches: 106, Indels: 44
0.72 0.20 0.08
Matches are distributed among these distances:
30 8 0.02
31 5 0.01
32 14 0.04
33 327 0.87
34 14 0.04
35 5 0.01
36 5 0.01
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (33 bp):
AAAGTTCCTGAGTTACCAAAGCCAGAATTGCCT
Found at i:4815378 original size:81 final size:81
Alignment explanation
Indices: 4815293--4815459 Score: 190
Period size: 81 Copynumber: 2.1 Consensus size: 81
4815283 AGCTCCCGAG
* * * ** *
4815293 TTGCCAAAACCTGAATCACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGA
1 TTGCCAAAACCTGAATCACCAAAAGCTCCCGAGTTACCAAAACCAGAATCACCAAAAGTTCCTGA
* *
4815358 GTTACCTAAGCCAGAA
66 GTTACCAAAACCAGAA
* * * * * **
4815374 TTGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTGCCAAAACTTGAATCACCAAAAGTTCCTGA
1 TTGCCAAAACCTGAATCACCAAAAGCTCCCGAGTTACCAAAACCAGAATCACCAAAAGTTCCTGA
*
4815439 GTTACCAAAATCAGAA
66 GTTACCAAAACCAGAA
4815455 TTGCC
1 TTGCC
4815460 TAAAGTTCAT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.22
Consensus pattern (81 bp):
TTGCCAAAACCTGAATCACCAAAAGCTCCCGAGTTACCAAAACCAGAATCACCAAAAGTTCCTGA
GTTACCAAAACCAGAA
Found at i:4815410 original size:114 final size:115
Alignment explanation
Indices: 4815261--4815627 Score: 432
Period size: 114 Copynumber: 3.2 Consensus size: 115
4815251 GTTCCTGAAG
* *
4815261 TGCCTAAG-CCTGAATTACTCAAAGCTCCCGAGTTGCCAAAACCTGAATCACCAAAAGTTCCTGA
1 TGCCCAAGCCCTGAATTACCCAAAGCTCCCGAGTTGCCAAAACCTGAATCACCAAAAGTTCCTGA
* * *
4815325 GTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGTTACCTAAGCCAGAAT
66 GTTACCAAAACCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCAGAAT
*
4815375 TGCCCAAG-CCTGAATTACCCAAAGCTCCCGAGTTGCCAAAACTTGAATCACCAAAAGTTCCTGA
1 TGCCCAAGCCCTGAATTACCCAAAGCTCCCGAGTTGCCAAAACCTGAATCACCAAAAGTTCCTGA
* * *
4815439 GTTACCAAAATCAGAATTGCCTAAAGTTCATGAGGTGCCTAAGCCGGAAT
66 GTTACCAAAACCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCAGAAT
* * ** * * * * ** * ***
4815489 TGCCCAAAGCTCCTGAATTGCCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCGACT
1 TGCCC-AAGC-CCTGAATTACCCAAAGCTCCCGAGTTGCCAAAACCTGAATCACCAAAAGTTCCT
* * * *
4815554 GAGTTGCCAAAACCTGAATTACCAAAAGTTCCTGAGGTGCCTAAGCCAGAAT
64 GAGTTACCAAAACCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCAGAAT
*
4815606 TGCCAAAAGCTCCTGAATTACC
1 TGCC-CAAGC-CCTGAATTACC
4815628 AAAACCTCAA
Statistics
Matches: 216, Mismatches: 33, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
114 110 0.51
115 3 0.01
117 103 0.48
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.22
Consensus pattern (115 bp):
TGCCCAAGCCCTGAATTACCCAAAGCTCCCGAGTTGCCAAAACCTGAATCACCAAAAGTTCCTGA
GTTACCAAAACCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCAGAAT
Found at i:4815524 original size:51 final size:51
Alignment explanation
Indices: 4815452--4815565 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
4815442 ACCAAAATCA
* * * * * * **
4815452 GAATTGCCTAAAGTTCATGAGGTGCCTAAGCCGGAATTGCCCAAAGCTCCT
1 GAATTGCCAAAAATTCATGAGGTACCAAAACCAGAATTGCCCAAAGCGACT
*
4815503 GAATTGCCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCGACT
1 GAATTGCCAAAAATTCATGAGGTACCAAAACCAGAATTGCCCAAAGCGACT
*
4815554 GAGTTGCCAAAA
1 GAATTGCCAAAA
4815566 CCTGAATTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (51 bp):
GAATTGCCAAAAATTCATGAGGTACCAAAACCAGAATTGCCCAAAGCGACT
Found at i:4815570 original size:66 final size:66
Alignment explanation
Indices: 4815500--4815680 Score: 218
Period size: 66 Copynumber: 2.7 Consensus size: 66
4815490 GCCCAAAGCT
* * * *
4815500 CCTGAATTGCCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCGACTGAGTTGCCAAA
1 CCTGAATTACCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCAAAAGCGACTGAATTACCAAA
4815565 A
66 A
* * * * **
4815566 CCTGAATTACCAAAAGTTCCTGAGGTGCCTAAGCCAGAATTGCCAAAAGCTCCTGAATTACCAAA
1 CCTGAATTACCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCAAAAGCGACTGAATTACCAAA
4815631 A
66 A
* * * * * *
4815632 CCTCAATTACCTAAAATTCCCGAGTTAACAAAACCAGAATTGCCTAAAG
1 CCTGAATTACCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCAAAAG
4815681 TTCCAGAGGT
Statistics
Matches: 95, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 95 1.00
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.20
Consensus pattern (66 bp):
CCTGAATTACCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCAAAAGCGACTGAATTACCAAA
A
Found at i:4815573 original size:84 final size:83
Alignment explanation
Indices: 4815425--4815588 Score: 195
Period size: 84 Copynumber: 2.0 Consensus size: 83
4815415 ACTTGAATCA
* * * * * *
4815425 CCAAAAGTTCCTGAGTTACCAAAATCAGAATTGCCTAAAGTTCATGAGGTGCCTAAGCCGGAATT
1 CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAG-TCATGAGGTGCCAAAACCGGAATT
* *
4815490 GCCCAAAGCTCCTGAATTG
65 ACCAAAAGCTCCTGAATTG
* *
4815509 CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAG-CGACTGAGTTGCCAAAACCTGAAT
1 CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGTC-A-TGAGGTGCCAAAACCGGAAT
*
4815573 TACCAAAAGTTCCTGA
64 TACCAAAAGCTCCTGA
4815589 GGTGCCTAAG
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
82 1 0.01
83 1 0.01
84 65 0.97
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.21
Consensus pattern (83 bp):
CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGTCATGAGGTGCCAAAACCGGAATTA
CCAAAAGCTCCTGAATTG
Found at i:4815681 original size:99 final size:99
Alignment explanation
Indices: 4815561--4815750 Score: 256
Period size: 99 Copynumber: 1.9 Consensus size: 99
4815551 ACTGAGTTGC
* * * * * *
4815561 CAAAACCTGAATTACCAAAAGTTCCTGAGGTGCCTAAGCCAGAATTG-CCAAAAGCTCCTGAATT
1 CAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAA-CTCCTGAACT
4815625 ACCAAAACCTCAATTACCTAAAATTCCCGAGTTAA
65 ACCAAAACCTCAATTACCTAAAATTCCCGAGTTAA
* * * *
4815660 CAAAACCAGAATTGCCTAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCCTGAGCTG
1 CAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCCTGAACTA
* *
4815725 CCAAAACCTGAATTACCTAAAGTTCC
66 CCAAAACCTCAATTACCTAAAATTCC
4815751 TGAATTGCCT
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 72 0.92
100 6 0.08
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (99 bp):
CAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCCTGAACTA
CCAAAACCTCAATTACCTAAAATTCCCGAGTTAA
Found at i:4818126 original size:31 final size:29
Alignment explanation
Indices: 4818081--4818139 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
4818071 CAGAACCTTG
4818081 TAATATATAATATATATGA-TATAATATAC
1 TAATATATAATATATAT-ATTATAATATAC
4818110 TAATATATAAATTATATATATTATAATATA
1 TAATATAT-AA-TATATATATTATAATATA
4818140 AATATTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 8 0.30
30 3 0.11
31 16 0.59
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (29 bp):
TAATATATAATATATATATTATAATATAC
Found at i:4818143 original size:29 final size:30
Alignment explanation
Indices: 4818082--4818149 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
4818072 AGAACCTTGT
4818082 AATATAT-AA-TATATATGATATAATATAC
1 AATATATAAATTATATATGATATAATATAC
4818110 TAATATATAAATTATATAT-ATTATAATATA-
1 -AATATATAAATTATATATGA-TATAATATAC
4818140 AATAT-TAAAT
1 AATATATAAAT
4818150 AACAATATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
28 5 0.14
29 12 0.33
30 3 0.08
31 16 0.44
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (30 bp):
AATATATAAATTATATATGATATAATATAC
Found at i:4821528 original size:3 final size:3
Alignment explanation
Indices: 4821522--4821550 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
4821512 TATTCTTCTT
4821522 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
4821551 TCTTTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:4822660 original size:20 final size:20
Alignment explanation
Indices: 4822635--4822678 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
4822625 GGACTACCGG
4822635 AAAATA-CAAGGAAGTACAAA
1 AAAATATCAAGGAA-TACAAA
* *
4822655 AAAATATGAGGGAATACAAA
1 AAAATATCAAGGAATACAAA
4822675 AAAA
1 AAAA
4822679 ACTAAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.66, C:0.07, G:0.16, T:0.11
Consensus pattern (20 bp):
AAAATATCAAGGAATACAAA
Found at i:4822776 original size:20 final size:20
Alignment explanation
Indices: 4822643--4822769 Score: 82
Period size: 20 Copynumber: 6.4 Consensus size: 20
4822633 GGAAAATACA
* *
4822643 AGGAAGTACAAAAAAATATG
1 AGGAAATACAAAAAATTATG
* *
4822663 AGGGAATACAAAAAA-AACT-
1 AGGAAATACAAAAAATTA-TG
* * *
4822682 AAGAAAAACCAAAAATTAT-
1 AGGAAATACAAAAAATTATG
*
4822701 AAGAGAATA-ATAAAAATTATG
1 AGGA-AATACA-AAAAATTATG
** * *
4822722 AATAAGTACTAAAAATTATG
1 AGGAAATACAAAAAATTATG
*
4822742 AGGAAATACAAAAAATTTTG
1 AGGAAATACAAAAAATTATG
4822762 AGGAAATA
1 AGGAAATA
4822770 TAGAAAAAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
19 17 0.20
20 63 0.76
21 3 0.04
ACGTcount: A:0.61, C:0.06, G:0.14, T:0.20
Consensus pattern (20 bp):
AGGAAATACAAAAAATTATG
Found at i:4823086 original size:21 final size:21
Alignment explanation
Indices: 4823060--4823108 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
4823050 TAAACGAATA
**
4823060 CAAAAAATTTTGAGGAAGTAC
1 CAAAAAATTCCGAGGAAGTAC
4823081 C-AAAAATTCCGAGGAAGTAC
1 CAAAAAATTCCGAGGAAGTAC
4823101 CAAAAAAT
1 CAAAAAAT
4823109 ATGAAGATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.18
Consensus pattern (21 bp):
CAAAAAATTCCGAGGAAGTAC
Found at i:4823449 original size:20 final size:20
Alignment explanation
Indices: 4823396--4823449 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
4823386 GAAACACCAT
* *
4823396 AAATTATGAGAGAGTACTAA
1 AAATTATGAGAGAATACAAA
4823416 AAATT-TCGAGAGAATACAAAA
1 AAATTAT-GAGAGAATAC-AAA
4823437 AAATTATGA-AGAA
1 AAATTATGAGAGAA
4823450 ATACGAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 1 0.03
20 18 0.62
21 9 0.31
22 1 0.03
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (20 bp):
AAATTATGAGAGAATACAAA
Found at i:4823831 original size:18 final size:20
Alignment explanation
Indices: 4823803--4823841 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
4823793 AGAAGTATGG
*
4823803 AAAATTATAAATATA-TAAA
1 AAAATTATAAAAATACTAAA
4823822 AAAATT-TAAAAATACTAAA
1 AAAATTATAAAAATACTAAA
4823841 A
1 A
4823842 TTATGAGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAATTATAAAAATACTAAA
Found at i:4824726 original size:74 final size:74
Alignment explanation
Indices: 4824603--4824749 Score: 226
Period size: 74 Copynumber: 2.0 Consensus size: 74
4824593 TCTTATAAAT
* * *
4824603 TGTTAGAGTTGTGTGACTCGAATCTCGTTTGATTCGGTCTGAAAAGTTCGA-AGTGCAACTCACT
1 TGTTAGAGTTGTGTGACCCGAATCCCATTTGATTCGGTCTGAAAAGTTCGAGA-TGCAACTCACT
*
4824667 TGTTAAAAAC
65 TATTAAAAAC
4824677 TGTTAGAGTTGTGTGACCCGAATCCCATTTGATTCGGTCT-AAAAGGTTCGAGATGCAACTCACT
1 TGTTAGAGTTGTGTGACCCGAATCCCATTTGATTCGGTCTGAAAA-GTTCGAGATGCAACTCACT
4824741 TATTAAAAA
65 TATTAAAAA
4824750 AACAAAATAG
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
73 4 0.06
74 62 0.93
75 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (74 bp):
TGTTAGAGTTGTGTGACCCGAATCCCATTTGATTCGGTCTGAAAAGTTCGAGATGCAACTCACTT
ATTAAAAAC
Found at i:4825320 original size:25 final size:25
Alignment explanation
Indices: 4825270--4825320 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
4825260 TTCATATATT
* **
4825270 TATTATATTTATATTATTTTCTTAA
1 TATTATATGTATATTATTTTAATAA
4825295 TATTATATGTA-ATTATTTTAAATAA
1 TATTATATGTATATTATTTT-AATAA
4825320 T
1 T
4825321 CGTATCGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (25 bp):
TATTATATGTATATTATTTTAATAA
Found at i:4826011 original size:33 final size:33
Alignment explanation
Indices: 4825932--4826029 Score: 115
Period size: 33 Copynumber: 3.0 Consensus size: 33
4825922 ACCGGAAATC
* * * * *
4825932 CCAAAACCCGAAATACCTAAAATGCCTGAGTTG
1 CCAAAACCCGAATTGCCTAAAGTTCCCGAGTTG
* *
4825965 CCAAAGCCCGAATTGCCTAAAGTTCCGGAGTTG
1 CCAAAACCCGAATTGCCTAAAGTTCCCGAGTTG
* *
4825998 CCAAAACCTGAATTGCCTAAGGTTCCCGAGTT
1 CCAAAACCCGAATTGCCTAAAGTTCCCGAGTT
4826030 TCCGAAAGTG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (33 bp):
CCAAAACCCGAATTGCCTAAAGTTCCCGAGTTG
Found at i:4826038 original size:51 final size:51
Alignment explanation
Indices: 4825983--4826131 Score: 217
Period size: 51 Copynumber: 2.9 Consensus size: 51
4825973 CGAATTGCCT
* * * *
4825983 AAAGTTCCGGAGTTGCCAAAACCTGAATTGCCTAAGGTTCCCGAGTTTCCG
1 AAAGTGCCAGAGTTGCCAAAACCTGAATTACCTAAGGTTCCCGAGTTTCCA
* * *
4826034 AAAGTGCCAGAATTGCCAAAACCTGAACTACCTAAGGTTCCTGAGTTTCCA
1 AAAGTGCCAGAGTTGCCAAAACCTGAATTACCTAAGGTTCCCGAGTTTCCA
* *
4826085 AAAGTGCCAGAGTTGCCAAAGCCTGAATTTCCTAAGGTTCCCGAGTT
1 AAAGTGCCAGAGTTGCCAAAACCTGAATTACCTAAGGTTCCCGAGTT
4826132 GAAAAAACCT
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (51 bp):
AAAGTGCCAGAGTTGCCAAAACCTGAATTACCTAAGGTTCCCGAGTTTCCA
Found at i:4826262 original size:33 final size:33
Alignment explanation
Indices: 4826220--4826284 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
4826210 TGAAGCACCA
4826220 AAAGTTCCCG-GGTTACCAAAGCCAGAGTTGCCT
1 AAAGTTCCCGAGG-TACCAAAGCCAGAGTTGCCT
* *
4826253 AAAGTTCCCGAGGTGCCCAAGCCAGAGTTGCC
1 AAAGTTCCCGAGGTACCAAAGCCAGAGTTGCC
4826285 CAAGGCTCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (33 bp):
AAAGTTCCCGAGGTACCAAAGCCAGAGTTGCCT
Found at i:4826295 original size:33 final size:33
Alignment explanation
Indices: 4826238--4826302 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
4826228 CGGGTTACCA
* *
4826238 AAGCCAGAGTTGCCTAAAGTTCCCGAGGTGCCC
1 AAGCCAGAGTTGCCCAAAGCTCCCGAGGTGCCC
* *
4826271 AAGCCAGAGTTGCCCAAGGCTCCCGAGTTGCC
1 AAGCCAGAGTTGCCCAAAGCTCCCGAGGTGCC
4826303 AAAAGTTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (33 bp):
AAGCCAGAGTTGCCCAAAGCTCCCGAGGTGCCC
Found at i:4826320 original size:51 final size:51
Alignment explanation
Indices: 4826244--4826344 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
4826234 ACCAAAGCCA
* * * *
4826244 GAGTTGCCTAAAGTTCCCGAGGTGCCCAAGCCAGAGTTGCCCAAGGCTCCC
1 GAGTTGCCAAAAGTTCCCGAGGTGCCCAAGCCAGAATTGCCAAAAGCTCCC
* *
4826295 GAGTTGCCAAAAGTTCCTGAGGTGCCTAAGCCAGAATTGCCAAAAGCTCC
1 GAGTTGCCAAAAGTTCCCGAGGTGCCCAAGCCAGAATTGCCAAAAGCTCC
4826345 TGAATTACCG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (51 bp):
GAGTTGCCAAAAGTTCCCGAGGTGCCCAAGCCAGAATTGCCAAAAGCTCCC
Found at i:4826392 original size:33 final size:33
Alignment explanation
Indices: 4826346--4826456 Score: 105
Period size: 33 Copynumber: 3.4 Consensus size: 33
4826336 AAAAGCTCCT
* * *
4826346 GAATTACCGAAAATTCCCGAATTAACAAAACCA
1 GAATTACCTAAAATTCCTGAATTACCAAAACCA
* * * *
4826379 GAATTGCCTAAAATTCCTGAAGTGCCGAAACCA
1 GAATTACCTAAAATTCCTGAATTACCAAAACCA
* * * * *
4826412 GAATTGCCCAAAGTTCCTGAGTTACCCAAACCA
1 GAATTACCTAAAATTCCTGAATTACCAAAACCA
*
4826445 GAAATACCTAAA
1 GAATTACCTAAA
4826457 TTACCCAACC
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.41, C:0.25, G:0.14, T:0.20
Consensus pattern (33 bp):
GAATTACCTAAAATTCCTGAATTACCAAAACCA
Found at i:4831834 original size:44 final size:44
Alignment explanation
Indices: 4831786--4831876 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
4831776 TAATCGCATC
4831786 ACATGTGTAATGCTACGTCCGTTTCCTATTTTCACATAATACTT
1 ACATGTGTAATGCTACGTCCGTTTCCTATTTTCACATAATACTT
*
4831830 ACATGTGTAATGCTATGTCCGTTTCCTATTTTCACATAATACTT
1 ACATGTGTAATGCTACGTCCGTTTCCTATTTTCACATAATACTT
4831874 ACA
1 ACA
4831877 AAAAAACCAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (44 bp):
ACATGTGTAATGCTACGTCCGTTTCCTATTTTCACATAATACTT
Found at i:4835929 original size:44 final size:44
Alignment explanation
Indices: 4835866--4835954 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
4835856 TGGGGATTAT
*
4835866 AAGGAATTGTACCCTAACGTATTGGGACTCGATTTATTTACATG
1 AAGGAATTGTACCCTAACGTATTGGGACTCGATTTATTTAAATG
*
4835910 AAGGAATTGTACCCTAACGTATTGGGACTCGATTTCTTTAAATG
1 AAGGAATTGTACCCTAACGTATTGGGACTCGATTTATTTAAATG
4835954 A
1 A
4835955 CTTGAACAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (44 bp):
AAGGAATTGTACCCTAACGTATTGGGACTCGATTTATTTAAATG
Found at i:4839061 original size:20 final size:20
Alignment explanation
Indices: 4839036--4839075 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
4839026 TTCACCTCAT
4839036 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
4839056 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
4839076 AAGACCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:4839653 original size:58 final size:58
Alignment explanation
Indices: 4839563--4839676 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
4839553 TTAACTCTGC
4839563 CATTCCTGACTTCGATGAAGTGGTTGAGAAGGAAAGAA-TGAAGGAAGAGTTACCGAAT
1 CATTCCTGACTTCGATGAAGTGGTTGAGAAGGAAA-AAGTGAAGGAAGAGTTACCGAAT
* *
4839621 CATTCCTGACTTTGATGAAGTGGTTGAGAAGGAAAAAGTGAAGGAGGAGTTACCGA
1 CATTCCTGACTTCGATGAAGTGGTTGAGAAGGAAAAAGTGAAGGAAGAGTTACCGA
4839677 GACAGTTAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 2 0.04
58 51 0.96
ACGTcount: A:0.35, C:0.11, G:0.31, T:0.23
Consensus pattern (58 bp):
CATTCCTGACTTCGATGAAGTGGTTGAGAAGGAAAAAGTGAAGGAAGAGTTACCGAAT
Found at i:4845706 original size:54 final size:53
Alignment explanation
Indices: 4845624--4845730 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 53
4845614 TGCCTGAAAG
4845624 AATCATATCCGACAATGCGCTGAACCTGAACAACAGCTCAATAGCAGAAGTCT
1 AATCATATCCGACAATGCGCTGAACCTGAACAACAGCTCAATAGCAGAAGTCT
* *
4845677 NAATCATATCCGACAATGCGCTGAACCTGAACAACAGGTGAATAGCAGAAGTCT
1 -AATCATATCCGACAATGCGCTGAACCTGAACAACAGCTCAATAGCAGAAGTCT
4845731 GCAGTCAATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.19
Consensus pattern (53 bp):
AATCATATCCGACAATGCGCTGAACCTGAACAACAGCTCAATAGCAGAAGTCT
Found at i:4846080 original size:56 final size:56
Alignment explanation
Indices: 4845998--4846105 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
4845988 CGGGTTTTGA
* * *
4845998 CTGAGCTATAATTGGATGAAGTAGAATGGGTTCAATCTCGATACGATCAGTTTTCG
1 CTGAGCTACAATTGAATGAAGCAGAATGGGTTCAATCTCGATACGATCAGTTTTCG
*
4846054 CTGAGGTACAATTGAATGAAGCAGAATGGGTTCAATCTCGATACGATCAGTT
1 CTGAGCTACAATTGAATGAAGCAGAATGGGTTCAATCTCGATACGATCAGTT
4846106 GAACTTGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (56 bp):
CTGAGCTACAATTGAATGAAGCAGAATGGGTTCAATCTCGATACGATCAGTTTTCG
Found at i:4848175 original size:100 final size:100
Alignment explanation
Indices: 4847309--4848178 Score: 1542
Period size: 100 Copynumber: 8.7 Consensus size: 100
4847299 AAAAGTAAAA
* *
4847309 AGATTGAAGCTACGATAGCGGATCTGGTTTCTCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
4847374 CGGCAGATCTTACTTCCTTAGCAGTGCAGCGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
4847409 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
4847474 CAGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
4847509 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
4847574 CGGCGGATCTTACTTCCTTAGTAGTGCAGCGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
* *
4847609 AGATTTAAGCTACGACAGCAGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
4847674 CAGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
4847709 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
4847774 CAGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
4847809 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
4847874 CAGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
* * *
4847909 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAGTTAAAAAAATTAAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
* ** *
4847974 CGGCGGATCTTACTTCCTTGGCAGTGCAATGGAAC
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
**
4848009 AGATTGAAGCTACGATGGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
*
4848074 CGGCGGATCTTACTTCCTTAGTAGTGCAGCGGAAT
66 CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
* *
4848109 AGATTTAAGCTACGACAGCAGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
4848174 CGGCG
66 CGGCG
4848179 ACGGCGGATC
Statistics
Matches: 736, Mismatches: 34, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 736 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (100 bp):
AGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
CGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAAT
Found at i:4848215 original size:56 final size:56
Alignment explanation
Indices: 4848129--4848234 Score: 194
Period size: 56 Copynumber: 1.9 Consensus size: 56
4848119 TACGACAGCA
* *
4848129 GATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGACGGCG
1 GATCTGGTTTCCCGGATATTGCAATTAAAAAAATTGAAGCCACAACGGCGACGGCG
4848185 GATCTGGTTTCCCGGATATTGCAATTAAAAAAATTGAAGCCACAACGGCG
1 GATCTGGTTTCCCGGATATTGCAATTAAAAAAATTGAAGCCACAACGGCG
4848235 GATCTTACTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (56 bp):
GATCTGGTTTCCCGGATATTGCAATTAAAAAAATTGAAGCCACAACGGCGACGGCG
Found at i:4848391 original size:256 final size:255
Alignment explanation
Indices: 4847921--4848422 Score: 729
Period size: 256 Copynumber: 2.0 Consensus size: 255
4847911 ATTGAAGCTA
* *
4847921 CGACAGCGGATCTGGTTTCCCTGATATTGCAGTTAAAAAAATTAAAGCCACAACGGCGGATCTTA
1 CGACAGCGGATCTGGTTTCCCGGATATTGCAATTAAAAAAATTAAAGCCACAACGGCGGATCTTA
* * * * * *
4847986 CTTCCTTGGCAGTGCAATGGAACAGATTGAAGCTACGATGGCGGATCTGGTTTCCCTGATATTGC
66 CTTCCTTAGAAGTGCAATAGAACAGATTGAAGCTACGACGGCGAATCTGGTTTCCCTGATATTAC
* * * * *
4848051 AATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGTAGTGCAGCGGAATAGATTTA
131 AATTAAAAAGATTGAAGCCACAACGACAGATCTTACTTCCTTAG-AGTGCAGCAGAACAGATTGA
* *
4848116 AGCTACGACAGCAGATCTGGTTTCCCTGATATTGCAATTAAA-AAGATTGAAGCCACAACGG
195 AGCTACGACAGCAGATCTGGTTTCCCCGACATTGCAATTAAACAA-ATTGAAGCCACAACGG
* *
4848177 CGACGGCGGATCTGGTTTCCCGGATATTGCAATTAAAAAAATTGAAGCCACAACGGCGGATCTTA
1 CGACAGCGGATCTGGTTTCCCGGATATTGCAATTAAAAAAATTAAAGCCACAACGGCGGATCTTA
* *
4848242 CTTCCTTAGAAGTGCAGTAGAACAGATTGAAGCTACGACGGTGAATCTGGTTTCCCTGATATTAC
66 CTTCCTTAGAAGTGCAATAGAACAGATTGAAGCTACGACGGCGAATCTGGTTTCCCTGATATTAC
* *
4848307 AATTAAAAAGATTGAAGCCACAACGACAGATCTTACTTCCTT-GACGGTGCGGTAGAACAGATTG
131 AATTAAAAAGATTGAAGCCACAACGACAGATCTTACTTCCTTAGA--GTGCAGCAGAACAGATTG
* ** *
4848371 AAGCTACGACGGTGGATCTGGTTTCCCCGACATTGCAGTTAAACAAATTGAA
194 AAGCTACGACAGCAGATCTGGTTTCCCCGACATTGCAATTAAACAAATTGAA
4848423 AATTTCAGAT
Statistics
Matches: 218, Mismatches: 25, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
254 1 0.00
255 1 0.00
256 214 0.98
257 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (255 bp):
CGACAGCGGATCTGGTTTCCCGGATATTGCAATTAAAAAAATTAAAGCCACAACGGCGGATCTTA
CTTCCTTAGAAGTGCAATAGAACAGATTGAAGCTACGACGGCGAATCTGGTTTCCCTGATATTAC
AATTAAAAAGATTGAAGCCACAACGACAGATCTTACTTCCTTAGAGTGCAGCAGAACAGATTGAA
GCTACGACAGCAGATCTGGTTTCCCCGACATTGCAATTAAACAAATTGAAGCCACAACGG
Found at i:4848421 original size:50 final size:50
Alignment explanation
Indices: 4847311--4848422 Score: 345
Period size: 50 Copynumber: 22.1 Consensus size: 50
4847301 AAGTAAAAAG
* ** * * *
4847311 ATTGAAGCTACGATAGCGGATCTGGTTTCTCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * *** * * *** * *
4847360 GATTGAAGCCACAACGGCAGATCTTACTT-CCTTAGCAGTGCAGCGGAATAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTTAAACAA
* * * *
4847411 ATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * *** * * *** * *
4847460 GATTGAAGCCACAACAGCGGATCTTACTT-CCTTAGCAGTGCAGCGGAATAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTTAAACAA
* * * *
4847511 ATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* *** * * * *** * *
4847560 GATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGTAGTGCAGCGGAATAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTTAAACAA
* * * * * *
4847611 ATTTAAGCTACGACAGCAGATCTGGTTTCCCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * *** * * *** * *
4847660 GATTGAAGCCACAACAGCGGATCTTACTT-CCTTAGCAGTGCAGCGGAATAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTTAAACAA
* * * *
4847711 ATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * *** * * *** * *
4847760 GATTGAAGCCACAACAGCGGATCTTACTT-CCTTAGCAGTGCAGCGGAATAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTTAAACAA
* * * *
4847811 ATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * *** * * *** * *
4847860 GATTGAAGCCACAACAGCGGATCTTACTT-CCTTAGCAGTGCAGCGGAATAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTTAAACAA
* * * *
4847911 ATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAGTTAAAAAA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * *** * * * * ** *
4847961 ATTAAAGCCACAACGGCGGATCTTACTTCCTTGGCAGTGCAATGGAACAG
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * * *
4848011 ATTGAAGCTACGATGGCGGATCTGGTTTCCCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* *** * * * *** * *
4848060 GATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGTAGTGCAGCGGAATAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTTAAACAA
* * * * * *
4848111 ATTTAAGCTACGACAGCAGATCTGGTTTCCCTGATATTGCAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * * *
4848160 GATTGAAGCCACAACGGCGACGGCGGATCTGGTTTCCCGGATATTGCAATTAAAAAA
1 -ATTGAAG-C-C-A---CGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* *** * * *
4848217 ATTGAAGCCACAACGGCGGATCTTACTTCCTTAGA-AGTGCAG-TAGAACAG
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCT-GACATTGCAGTTA-AACAA
* * * * * *
4848267 ATTGAAGCTACGACGGTGAATCTGGTTTCCCTGATATTACAATTAAA-AA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
* * * *** * ** * *
4848316 GATTGAAGCCACAACGACAGATCTTACTTCCTTGACGGTGC-GGTAGAACAG
1 -ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTA-AACAA
* * *
4848367 ATTGAAGCTACGACGGTGGATCTGGTTTCCCCGACATTGCAGTTAAACAA
1 ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
4848417 ATTGAA
1 ATTGAA
4848423 AATTTCAGAT
Statistics
Matches: 737, Mismatches: 282, Indels: 86
0.67 0.26 0.08
Matches are distributed among these distances:
49 41 0.06
50 605 0.82
51 44 0.06
53 2 0.00
54 1 0.00
55 1 0.00
56 41 0.06
57 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (50 bp):
ATTGAAGCCACGACGGCGGATCTGGTTTCCCTGACATTGCAGTTAAACAA
Found at i:4850839 original size:13 final size:12
Alignment explanation
Indices: 4850806--4850850 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
4850796 ATGAATAAAT
* *
4850806 ATTTACAAATAT
1 ATTTACAAGTAA
*
4850818 ATATACAAGTACA
1 ATTTACAAGTA-A
4850831 ATTTACAAGTAA
1 ATTTACAAGTAA
4850843 ATTTACAA
1 ATTTACAA
4850851 ACAAAAAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 18 0.64
13 10 0.36
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.33
Consensus pattern (12 bp):
ATTTACAAGTAA
Found at i:4852812 original size:21 final size:21
Alignment explanation
Indices: 4852778--4852834 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
4852768 AAAGGGTATC
* * *
4852778 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
4852799 TACAAATCATATCTTCTAAGAT
1 TACAAATCATATC-TCTAAGAT
* *
4852821 TGCATATCATATCT
1 TACAAATCATATCT
4852835 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:4853653 original size:45 final size:45
Alignment explanation
Indices: 4853603--4853965 Score: 349
Period size: 45 Copynumber: 8.1 Consensus size: 45
4853593 TACTTCTGTC
* * * *
4853603 TTCGATCTACTTCGCTGCCAATAAAGGAAGATAAGATCTACTGTT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATT
* * *
4853648 TTCGATCTACTTCTCTGCCAATACAGGAAGGCAAGATCCG-TGATCT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT-AT-T
* * * * * * *
4853694 TT-GATCTACTTCACTACCAATATAGGAAGCCTAGATATGTTATCT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT-T
* * * *
4853739 TT-GATCTACTTCGCTGCCGATACAGAAAGACAAGATCTGTTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATT
* * *
4853783 TTCGATCTACTTGGCTACCAATATAGGAAGACAAGATCTGCTATCT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT-T
* * * *
4853829 TT-GATCTACTTCGCTGCCAGTACAGGAAGTCAAGATCTGTTAACT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT-ATT
* * * * *
4853874 TT-GATCTACTTCACTGCCAATACAAGAAGATAAGATCTGTTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATT
* * *
4853918 TTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCTGCTGTT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATT
4853963 TTC
1 TTC
4853966 ACTGATCTGT
Statistics
Matches: 259, Mismatches: 52, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
44 6 0.02
45 246 0.95
46 7 0.03
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (45 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATT
Found at i:4853714 original size:90 final size:90
Alignment explanation
Indices: 4853601--4853957 Score: 414
Period size: 90 Copynumber: 4.0 Consensus size: 90
4853591 GTTACTTCTG
* * * * *
4853601 TCTTCGATCTACTTCGCTGCCAATAAAGGAAGATAAGATCTACTGT-TTTCGATCTACTTCTCTG
1 TCTTCGATCTACTTCACTACCAATAAAGGAAGATAAGATCTGCTATCTTT-GATCTACTTCGCTG
* * *
4853665 CCAATACAGGAAGGCAAGATCCGTGA
65 CCAATACAGGAAGACAAGATCTGTTA
* * * * *
4853691 TCTTTGATCTACTTCACTACCAATATAGGAAGCCT-AGATATGTTATCTTTGATCTACTTCGCTG
1 TCTTCGATCTACTTCACTACCAATAAAGGAAG-ATAAGATCTGCTATCTTTGATCTACTTCGCTG
* *
4853755 CCGATACAGAAAGACAAGATCTGTTA
65 CCAATACAGGAAGACAAGATCTGTTA
** * *
4853781 TCTTCGATCTACTTGGCTACCAATATAGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGC
1 TCTTCGATCTACTTCACTACCAATAAAGGAAGATAAGATCTGCTATCTTTGATCTACTTCGCTGC
* *
4853846 CAGTACAGGAAGTCAAGATCTGTTA
66 CAATACAGGAAGACAAGATCTGTTA
* * * * * *
4853871 ACTTTGATCTACTTCACTGCCAATACAA-GAAGATAAGATCTGTTATCTTCGATCTACTTCGCTA
1 TCTTCGATCTACTTCACTACCAATA-AAGGAAGATAAGATCTGCTATCTTTGATCTACTTCGCTG
*
4853935 CCAATATAGGAAGACAAGATCTG
65 CCAATACAGGAAGACAAGATCTG
4853958 CTGTTTTCAC
Statistics
Matches: 224, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
90 219 0.98
91 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (90 bp):
TCTTCGATCTACTTCACTACCAATAAAGGAAGATAAGATCTGCTATCTTTGATCTACTTCGCTGC
CAATACAGGAAGACAAGATCTGTTA
Found at i:4853956 original size:135 final size:136
Alignment explanation
Indices: 4853606--4853960 Score: 475
Period size: 135 Copynumber: 2.6 Consensus size: 136
4853596 TTCTGTCTTC
** * * * *
4853606 GATCTACTTCGCTGCCAATA-AAGGAAGATAAGATCTACTGTTTTCGATCTACTTCTCTGCCAAT
1 GATCTACTTCGCTGCCAATACAA-GAAGATAAGATCTGTTATCTTCGATCTACTTCGCTACCAAT
* * * * *
4853670 ACAGGAAGGCAAGATCCG-TGATCTTTGATCTACTTCACTACCAATATAGGAAGCCTAGATATGT
65 ATAGGAAGACAAGATCTGCTGATCTTTGATCTACTTCACTACCAATACAGGAAGCCAAGATATGT
*
4853734 TATCTTT
130 TAACTTT
* * *
4853741 GATCTACTTCGCTGCCGATAC-AGAAAGACAAGATCTGTTATCTTCGATCTACTTGGCTACCAAT
1 GATCTACTTCGCTGCCAATACAAG-AAGATAAGATCTGTTATCTTCGATCTACTTCGCTACCAAT
* * * * *
4853805 ATAGGAAGACAAGATCTGCT-ATCTTTGATCTACTTCGCTGCCAGTACAGGAAGTCAAGATCTGT
65 ATAGGAAGACAAGATCTGCTGATCTTTGATCTACTTCACTACCAATACAGGAAGCCAAGATATGT
4853869 TAACTTT
130 TAACTTT
*
4853876 GATCTACTTCACTGCCAATACAAGAAGATAAGATCTGTTATCTTCGATCTACTTCGCTACCAATA
1 GATCTACTTCGCTGCCAATACAAGAAGATAAGATCTGTTATCTTCGATCTACTTCGCTACCAATA
4853941 TAGGAAGACAAGATCTGCTG
66 TAGGAAGACAAGATCTGCTG
4853961 TTTTCACTGA
Statistics
Matches: 191, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
134 1 0.01
135 187 0.98
136 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (136 bp):
GATCTACTTCGCTGCCAATACAAGAAGATAAGATCTGTTATCTTCGATCTACTTCGCTACCAATA
TAGGAAGACAAGATCTGCTGATCTTTGATCTACTTCACTACCAATACAGGAAGCCAAGATATGTT
AACTTT
Found at i:4856718 original size:25 final size:24
Alignment explanation
Indices: 4856665--4856733 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 24
4856655 AAGAAAATCC
* *
4856665 AAAAGAATGAAAGAATAATTATTCG
1 AAAAGAATGAAAGAAT-ATTACTCA
*
4856690 AAAAGAATGAAAGAATATTGGCTCA
1 AAAAGAATGAAAGAATATT-ACTCA
4856715 AAAATGAATGTAAAGAATA
1 AAAA-GAATG-AAAGAATA
4856734 ACGATGTTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 3 0.08
25 22 0.58
26 5 0.13
27 8 0.21
ACGTcount: A:0.57, C:0.04, G:0.17, T:0.22
Consensus pattern (24 bp):
AAAAGAATGAAAGAATATTACTCA
Found at i:4861375 original size:19 final size:19
Alignment explanation
Indices: 4861351--4861425 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
4861341 AATCATATCT
*
4861351 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
4861370 TCTAAGATTGCATAAATCATA
1 TCTAAGATTGCAT--ATCATA
4861391 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
4861410 TGTAAGATTGCATATC
1 TCTAAGATTGCATATC
4861426 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 33 0.63
21 19 0.37
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:4861390 original size:21 final size:21
Alignment explanation
Indices: 4861328--4861423 Score: 103
Period size: 19 Copynumber: 4.7 Consensus size: 21
4861318 AAATTAAATC
*
4861328 TCTAAGATTACA-AAATCATA
1 TCTAAGATTGCATAAATCATA
*
4861348 TCTTCTAAGATTG--TATATCATA
1 ---TCTAAGATTGCATAAATCATA
4861370 TCTAAGATTGCATAAATCATA
1 TCTAAGATTGCATAAATCATA
4861391 TCTAAGATTGCAT--ATCATA
1 TCTAAGATTGCATAAATCATA
*
4861410 TGTAAGATTGCATA
1 TCTAAGATTGCATA
4861424 TCCTTGAAGA
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
19 28 0.43
21 21 0.32
22 7 0.11
23 9 0.14
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (21 bp):
TCTAAGATTGCATAAATCATA
Found at i:4861406 original size:40 final size:41
Alignment explanation
Indices: 4861328--4861423 Score: 133
Period size: 40 Copynumber: 2.3 Consensus size: 41
4861318 AAATTAAATC
* *
4861328 TCTAAGATTACA-AAATCATATCTTCTAAGATTGTATATCATA
1 TCTAAGATTGCATAAATCATA--TTCTAAGATTGCATATCATA
4861370 TCTAAGATTGCATAAATCATA-TCTAAGATTGCATATCATA
1 TCTAAGATTGCATAAATCATATTCTAAGATTGCATATCATA
*
4861410 TGTAAGATTGCATA
1 TCTAAGATTGCATA
4861424 TCCTTGAAGA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 31 0.62
42 11 0.22
43 8 0.16
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (41 bp):
TCTAAGATTGCATAAATCATATTCTAAGATTGCATATCATA
Found at i:4861894 original size:170 final size:168
Alignment explanation
Indices: 4861612--4861953 Score: 587
Period size: 170 Copynumber: 2.0 Consensus size: 168
4861602 TCTGAAAAAT
4861612 TTTTCAAAGCAAAATAAGAAAAAAAAAAGATACAATACATTTGAATAATTAATTAACTTATTAAG
1 TTTTCAAAGCAAAATAAGAAAAAAAAAAGATACAATACATTTGAATAATTAATTAACTTATTAAG
4861677 GTCCCAAAATTATTATTTTAGAAAATTTTTAAAATTTTAATTTTCTTTATATATTCTTTAGAA-T
66 GTCCCAAAATTATTATTTTAGAAAATTTTTAAAATTTTAATTTTCTTTATATATTCTTTAGAATT
*
4861741 TTTTTAAAAGAATTTTATATGCTTTTAAAAAAGATATAAA
131 TTTTTAAAA-AA-ATTATATGCTTTTAAAAAAGATATAAA
* *
4861781 GTTTTCAAAGCAAAATAAGAAAAAGAAAAGATACAATACATTTGAATAATTAATTAACTTATTTA
1 -TTTTCAAAGCAAAATAAGAAAAAAAAAAGATACAATACATTTGAATAATTAATTAACTTATTAA
*
4861846 GGTCCCAAAATTATTGTTTTAGAAAATTTTTAAAATTTTAATTTTCTTTATATATTCTTTAGAAT
65 GGTCCCAAAATTATTATTTTAGAAAATTTTTAAAATTTTAATTTTCTTTATATATTCTTTAGAAT
* * *
4861911 TTTTTTAAAAAAATTATATTCTTTTAGAAAATATATAAA
130 TTTTTTAAAAAAATTATATGCTTTTAAAAAAGATATAAA
4861950 TTTT
1 TTTT
4861954 AGAATTTTTA
Statistics
Matches: 164, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
168 4 0.02
169 23 0.14
170 127 0.77
171 10 0.06
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (168 bp):
TTTTCAAAGCAAAATAAGAAAAAAAAAAGATACAATACATTTGAATAATTAATTAACTTATTAAG
GTCCCAAAATTATTATTTTAGAAAATTTTTAAAATTTTAATTTTCTTTATATATTCTTTAGAATT
TTTTTAAAAAAATTATATGCTTTTAAAAAAGATATAAA
Found at i:4863143 original size:33 final size:33
Alignment explanation
Indices: 4863041--4863152 Score: 109
Period size: 33 Copynumber: 3.4 Consensus size: 33
4863031 CCAGAAATCT
* * *
4863041 CAAAACCTGAAATACCTAAAATGCCAGAGTTGT-
1 CAAAACCTGAATTGCCTAAAGTGCCAGAGTT-TC
* * * *
4863074 CAAGACCTGAATTGCCTAAAGTTCCGGAGTTGC
1 CAAAACCTGAATTGCCTAAAGTGCCAGAGTTTC
* *
4863107 CAAAACCTGAGTTGCCTAAAGTGCCAAAGTTTC
1 CAAAACCTGAATTGCCTAAAGTGCCAGAGTTTC
* *
4863140 CAAAGCCAGAATT
1 CAAAACCTGAATT
4863153 TCCAAAAGCT
Statistics
Matches: 62, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (33 bp):
CAAAACCTGAATTGCCTAAAGTGCCAGAGTTTC
Found at i:4863326 original size:33 final size:33
Alignment explanation
Indices: 4863199--4863769 Score: 303
Period size: 33 Copynumber: 17.3 Consensus size: 33
4863189 TGATGAAGTC
* * * * *
4863199 AAAGTTTCAGAGTTACCAAAGCAAGAATTACCT
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* ** *
4863232 AGAGTTCCAAAGGTGCCCAAA-CCAGAATTACCTA
1 AAAGTTCCTGAGTTG-CCAAAGCCAGAATTACC-A
* * * * * *
4863266 AAA-CTCCTGAGCTACTAAAACCTGAATTACCA
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * * * *
4863298 AAAGTTCTTGAGTTACCAAAGCAAGAATTGCCT
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
** * * * *
4863331 AAAGTTTCCCAAGGTGCCCAAGCTAGAATTACCC
1 AAAG-TTCCTGAGTTGCCAAAGCCAGAATTACCA
* * **
4863365 AAAGTTCCCGAGTTGCCAAAACTTGAATTACCA
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * *
4863398 AAAGCTCTTGAGTTAG-CAAAGCCAGAATTATCTA
1 AAAGTTCCTGAGTT-GCCAAAGCCAGAATTA-CCA
* * * *
4863432 AAA-CTCCTGAGTTGCCAAAACCTGAATTACTA
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * * *
4863464 AAAGTTCTTGAGTTACCAAAGCCAGAATTGCCT
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * * *
4863497 AAAGTTCATGAGGTGTCC-AAGCCAGAATTGCCT
1 AAAGTTCCTGAGTTG-CCAAAGCCAGAATTACCA
* * * *
4863530 AAAGCTCCTGAGTTGCCAAAACCCGAATTATCA
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * * * * *
4863563 AAATTTCTTGAGTTACCAAAGCCTGAATTGCCT
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * * * *
4863596 AAAGTTCCTGAGGTGCCCAAGTCAAAATTACCC
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * *
4863629 AAAGCTCCTGAGTTGCCAAA-ACATGAATCACCA
1 AAAGTTCCTGAGTTGCCAAAGCCA-GAATTACCA
* * * * * *
4863662 AAAGTTCCTAAGTTACCAATGCCTGAATTGCCT
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
* * * *
4863695 AGAGTTCCTGAAG-TGCCCAAGCCAAAATTACCC
1 AAAGTTCCTG-AGTTGCCAAAGCCAGAATTACCA
* * * * *
4863728 AAAGCTCTTGAATTACCAAAGCCTGAATTACCTA
1 AAAGTTCCTGAGTTGCCAAAGCCAGAATTACC-A
4863762 AAA-TTCCT
1 AAAGTTCCT
4863770 AAGGTGTTGA
Statistics
Matches: 399, Mismatches: 123, Indels: 32
0.72 0.22 0.06
Matches are distributed among these distances:
32 20 0.05
33 334 0.84
34 45 0.11
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (33 bp):
AAAGTTCCTGAGTTGCCAAAGCCAGAATTACCA
Found at i:4863392 original size:100 final size:99
Alignment explanation
Indices: 4863208--4863433 Score: 290
Period size: 100 Copynumber: 2.3 Consensus size: 99
4863198 CAAAGTTTCA
* *
4863208 GAGTTACCAAAGCAAGAATTACCTAGAGTTCCAAAGGTGCCCAAACCAGAATTACCTAAAACTCC
1 GAGTTACCAAAGCAAGAATTACCTAAAGTTCCAAAGGTGCCCAAACCAGAATTACCCAAAACTCC
* * *
4863273 TGAGCTACTAAAACCTGAATTACCAAAAGTTCTT
66 CGAGCTACCAAAACCTGAATTACCAAAAGCTCTT
* * * * **
4863307 GAGTTACCAAAGCAAGAATTGCCTAAAGTTTCCCAAGGTGCCCAAGCTAGAATTACCCAAAGTTC
1 GAGTTACCAAAGCAAGAATTACCTAAAG-TTCCAAAGGTGCCCAAACCAGAATTACCCAAAACTC
* * *
4863372 CCGAGTTGCCAAAACTTGAATTACCAAAAGCTCTT
65 CCGAGCTACCAAAACCTGAATTACCAAAAGCTCTT
* * *
4863407 GAGTTAGCAAAGCCAGAATTATCTAAA
1 GAGTTACCAAAGCAAGAATTACCTAAA
4863434 ACTCCTGAGT
Statistics
Matches: 108, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
99 26 0.24
100 82 0.76
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (99 bp):
GAGTTACCAAAGCAAGAATTACCTAAAGTTCCAAAGGTGCCCAAACCAGAATTACCCAAAACTCC
CGAGCTACCAAAACCTGAATTACCAAAAGCTCTT
Found at i:4863519 original size:99 final size:99
Alignment explanation
Indices: 4863416--4863764 Score: 448
Period size: 99 Copynumber: 3.5 Consensus size: 99
4863406 TGAGTTAGCA
* * * *
4863416 AAGCCAGAATTATCTAAAACTCCTGAGTTGCCAAAACCTGAATTACTAAAAGTTCTTGAGTTACC
1 AAGCCAAAATTACCCAAAGCTCCTGAGTTGCCAAAACCTGAATTACTAAAAGTTCTTGAGTTACC
* * *
4863481 AAAGCCAGAATTGCCTAAAGTTCATGAGGTGTCC
66 AAAGCCTGAATTGCCTAAAGTTCCTGAGGTGCCC
* * * * *
4863515 AAGCCAGAATTGCCTAAAGCTCCTGAGTTGCCAAAACCCGAATTA-TCAAAATTTCTTGAGTTAC
1 AAGCCAAAATTACCCAAAGCTCCTGAGTTGCCAAAACCTGAATTACT-AAAAGTTCTTGAGTTAC
4863579 CAAAGCCTGAATTGCCTAAAGTTCCTGAGGTGCCC
65 CAAAGCCTGAATTGCCTAAAGTTCCTGAGGTGCCC
* * * * * *
4863614 AAGTCAAAATTACCCAAAGCTCCTGAGTTGCCAAAACATGAATCACCAAAAGTTCCTAAGTTACC
1 AAGCCAAAATTACCCAAAGCTCCTGAGTTGCCAAAACCTGAATTACTAAAAGTTCTTGAGTTACC
* * *
4863679 AATGCCTGAATTGCCTAGAGTTCCTGAAGTGCCC
66 AAAGCCTGAATTGCCTAAAGTTCCTGAGGTGCCC
* * * *
4863713 AAGCCAAAATTACCCAAAGCTCTTGAATTACCAAAGCCTGAATTACCTAAAA
1 AAGCCAAAATTACCCAAAGCTCCTGAGTTGCCAAAACCTGAATTA-CTAAAA
4863765 TTCCTAAGGT
Statistics
Matches: 217, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
98 1 0.00
99 211 0.97
100 5 0.02
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (99 bp):
AAGCCAAAATTACCCAAAGCTCCTGAGTTGCCAAAACCTGAATTACTAAAAGTTCTTGAGTTACC
AAAGCCTGAATTGCCTAAAGTTCCTGAGGTGCCC
Found at i:4863756 original size:15 final size:17
Alignment explanation
Indices: 4863720--4863759 Score: 57
Period size: 15 Copynumber: 2.4 Consensus size: 17
4863710 CCCAAGCCAA
4863720 AATTACCCAAAGCTCTTG
1 AATTA-CCAAAGCTCTTG
4863738 AATTACCAAAGC-C-TG
1 AATTACCAAAGCTCTTG
4863753 AATTACC
1 AATTACC
4863760 TAAAATTCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.41
16 1 0.05
17 7 0.32
18 5 0.23
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.25
Consensus pattern (17 bp):
AATTACCAAAGCTCTTG
Found at i:4867004 original size:12 final size:12
Alignment explanation
Indices: 4866987--4867012 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4866977 CAAAATAGGC
4866987 TTTTAGCGGCGT
1 TTTTAGCGGCGT
4866999 TTTTAGCGGCGT
1 TTTTAGCGGCGT
4867011 TT
1 TT
4867013 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:4867060 original size:41 final size:39
Alignment explanation
Indices: 4867001--4867133 Score: 126
Period size: 40 Copynumber: 3.3 Consensus size: 39
4866991 AGCGGCGTTT
* *
4867001 TTAGCGGCGTTTGGATAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGTTT-TAT-AAAAACGCCGCTAAAAATCAAGCA
* ** *
4867042 TTAGCGGCGCTTTTATAAAAACGCTGCTAAAGGTCGAGCA
1 TTAGCGGCG-TTTTATAAAAACGCCGCTAAAAATCAAGCA
**
4867082 TTAGCGGCGCTTGTT-GGAAAACGCCGCTAAAAAT-AAGCA
1 TTAGCGGCG-TT-TTATAAAAACGCCGCTAAAAATCAAGCA
*
4867121 TTACCGGCGTTTT
1 TTAGCGGCGTTTT
4867134 CCAAAAAGTG
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
37 2 0.03
38 2 0.03
39 12 0.16
40 45 0.58
41 13 0.17
42 3 0.04
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (39 bp):
TTAGCGGCGTTTTATAAAAACGCCGCTAAAAATCAAGCA
Found at i:4867306 original size:40 final size:41
Alignment explanation
Indices: 4867188--4867348 Score: 270
Period size: 41 Copynumber: 4.0 Consensus size: 41
4867178 TGAGTTTTAG
* *
4867188 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATTCTC
1 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
*
4867229 GGGCCTTTAACGGCGTTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
* *
4867270 GGGCCTTTAGCGGC-TTTGTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
4867310 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGC
4867349 CGCTAATGCT
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
40 38 0.34
41 73 0.66
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
Found at i:4867324 original size:81 final size:82
Alignment explanation
Indices: 4867188--4867348 Score: 279
Period size: 81 Copynumber: 2.0 Consensus size: 82
4867178 TGAGTTTTAG
* *
4867188 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATTCTCGGGCCTTTAACGGCGTTTTTGAAT
1 GGGCCTTTAGCGGCGTTTGTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAACGGCGTTTTTGAAT
4867253 AAGCGCCGCTAATGCTC
66 AAGCGCCGCTAATGCTC
* *
4867270 GGGCCTTTAGCGGC-TTTGTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAT
1 GGGCCTTTAGCGGCGTTTGTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAACGGCGTTTTTGAAT
4867334 AAGCGCCGCTAATGC
66 AAGCGCCGCTAATGC
4867349 CGCTAATGCT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
81 61 0.81
82 14 0.19
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (82 bp):
GGGCCTTTAGCGGCGTTTGTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAACGGCGTTTTTGAAT
AAGCGCCGCTAATGCTC
Found at i:4867379 original size:50 final size:50
Alignment explanation
Indices: 4867297--4867399 Score: 170
Period size: 50 Copynumber: 2.1 Consensus size: 50
4867287 GTGAAGAAGC
* *
4867297 GCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAAT
1 GCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAAT
* *
4867347 GCCGCTAATGCTTGGGCCTTTAGTGGCATTTTTGAAAAAGCGCCGCTAAT
1 GCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAAT
4867397 GCC
1 GCC
4867400 CGCTTTTGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.28
Consensus pattern (50 bp):
GCCGCTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAAT
Found at i:4868282 original size:72 final size:70
Alignment explanation
Indices: 4868119--4868299 Score: 197
Period size: 72 Copynumber: 2.6 Consensus size: 70
4868109 CGTTTTACTG
* * *
4868119 AAAGCGCCGC--AAAAACCAAAGACAAACGATGCCGTTTCTGAGTTTTTGGGGATTTAGCGACGT
1 AAAGCGCCGCTAAAAAACCTAAGACAAACGGTGCCGTTTCGGAGTTTTTGGGGATTTAGCGACGT
4868182 TTTTA
66 TTTTA
* **** *
4868187 ATCAAGCGCCACTAATTTTCCTAAGACAAACGGTGCCGTTTCGGTAGTTTTT-GGGATTTAGCGG
1 A--AAGCGCCGCTAAAAAACCTAAGACAAACGGTGCCGTTTCGG-AGTTTTTGGGGATTTAGCGA
4868251 CGTTTTTGGA
63 CGTTTTT--A
* *
4868261 AAAGCGCCGCTAAAAAACCTAAGCCAAACTGTGCCGTTT
1 AAAGCGCCGCTAAAAAACCTAAGACAAACGGTGCCGTTT
4868300 TCCAAGCTTT
Statistics
Matches: 90, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
68 1 0.01
70 8 0.09
72 72 0.80
73 7 0.08
74 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (70 bp):
AAAGCGCCGCTAAAAAACCTAAGACAAACGGTGCCGTTTCGGAGTTTTTGGGGATTTAGCGACGT
TTTTA
Found at i:4868453 original size:113 final size:114
Alignment explanation
Indices: 4868243--4868461 Score: 266
Period size: 113 Copynumber: 1.9 Consensus size: 114
4868233 GTTTTTGGGA
* * **
4868243 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAAAAAACCTAAGCCAAACTGTGCCGTTTTCCAAGCT
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAAAAAACATAAGCCAAACGGCACCGTTTTCCAAGCT
*
4868308 TTCGTGGAATTAGCGGCGCTTTTACGATAGCGCCGCTAATGTTCATGGC
66 TTCGAGGAATTAGCGGCGCTTTTACGATAGCGCCGCTAATGTTCATGGC
* * *
4868357 TTTAGCGGCGTTTTTGGAGAAGCGCCGC-AAAAAACATATGTCC-AACGGCACCGTTTT-CATAT
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAAAAAACATAAG-CCAAACGGCACCGTTTTCCA-AG
* ** * *
4868419 CTTTTGAGGCCTTAGCGGCGTTTTTAGTGA-AGCGCCGCTAATG
64 CTTTCGAGGAATTAGCGGCGCTTTTA-CGATAGCGCCGCTAATG
4868462 GTTGGGGTTG
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
112 2 0.02
113 56 0.63
114 31 0.35
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAAAAAACATAAGCCAAACGGCACCGTTTTCCAAGCT
TTCGAGGAATTAGCGGCGCTTTTACGATAGCGCCGCTAATGTTCATGGC
Found at i:4868663 original size:73 final size:73
Alignment explanation
Indices: 4868544--4868717 Score: 332
Period size: 73 Copynumber: 2.4 Consensus size: 73
4868534 TAATGCTTCC
4868544 TTTAGCGGCGTTTTTGGAGAAGCGCCGCAAGAAAACTAAGCCGAACGGTGCCGTTTTTGGAGCTT
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCAAGAAAACTAAGCCGAACGGTGCCGTTTTTGGAGCTT
4868609 TTTGGGGA
66 TTTGGGGA
4868617 TTTAGCGGCGTTTTTGGAGAAGCGCCGCAAGAAAACTAAGCCGAACGGTGCCGTTTTTGGAGCTT
1 TTTAGCGGCGTTTTTGGAGAAGCGCCGCAAGAAAACTAAGCCGAACGGTGCCGTTTTTGGAGCTT
4868682 TTTGGGGA
66 TTTGGGGA
4868690 TTTAGCGGCGTTTTTTGG-GAAGCGCCGC
1 TTTAGCGGCG-TTTTTGGAGAAGCGCCGC
4868718 TAATGCTCAG
Statistics
Matches: 100, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
73 93 0.93
74 7 0.07
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.28
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTGGAGAAGCGCCGCAAGAAAACTAAGCCGAACGGTGCCGTTTTTGGAGCTT
TTTGGGGA
Found at i:4869006 original size:7 final size:7
Alignment explanation
Indices: 4868994--4869044 Score: 50
Period size: 7 Copynumber: 6.9 Consensus size: 7
4868984 GTGTCATGCT
4868994 TTAGGGG
1 TTAGGGG
4869001 TTAGGGG
1 TTAGGGG
4869008 TTAGGGG
1 TTAGGGG
4869015 ATTTAGGGG
1 --TTAGGGG
4869024 ATTTAGGGG
1 --TTAGGGG
*
4869033 TTA-CGG
1 TTAGGGG
4869039 TTAGGG
1 TTAGGG
4869045 TTTCAACGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
6 5 0.13
7 18 0.46
9 16 0.41
ACGTcount: A:0.18, C:0.02, G:0.49, T:0.31
Consensus pattern (7 bp):
TTAGGGG
Found at i:4869022 original size:9 final size:8
Alignment explanation
Indices: 4868993--4869034 Score: 52
Period size: 9 Copynumber: 5.2 Consensus size: 8
4868983 TGTGTCATGC
4868993 TTTAGGGG
1 TTTAGGGG
4869001 -TTAGGGG
1 TTTAGGGG
4869008 -TTAGGGG
1 TTTAGGGG
4869015 ATTTAGGGG
1 -TTTAGGGG
4869024 ATTTAGGGG
1 -TTTAGGGG
4869033 TT
1 TT
4869035 ACGGTTAGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 14 0.44
8 2 0.06
9 16 0.50
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.36
Consensus pattern (8 bp):
TTTAGGGG
Found at i:4869219 original size:13 final size:13
Alignment explanation
Indices: 4869197--4869238 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
4869187 TGAGTTTGGG
* *
4869197 GTTTAAGGTTTGA
1 GTTTAGGGTTTTA
4869210 GTTTAGGGTTTTA
1 GTTTAGGGTTTTA
*
4869223 G-CTAGGGTTTTA
1 GTTTAGGGTTTTA
4869235 GTTT
1 GTTT
4869239 GGAAATTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.17, C:0.02, G:0.31, T:0.50
Consensus pattern (13 bp):
GTTTAGGGTTTTA
Found at i:4869395 original size:14 final size:14
Alignment explanation
Indices: 4869367--4869437 Score: 58
Period size: 14 Copynumber: 5.1 Consensus size: 14
4869357 TTCCCAAAAA
4869367 TATGGTTTA-GGTT
1 TATGGTTTAGGGTT
4869380 TATGGTTTAGGGTT
1 TATGGTTTAGGGTT
** *
4869394 TACAGTTTAGAGTT
1 TATGGTTTAGGGTT
*
4869408 TA-GAGTTTAGTGTT
1 TATG-GTTTAGGGTT
*
4869422 T-TAGGTTTGGGGTT
1 TAT-GGTTTAGGGTT
4869436 TA
1 TA
4869438 AGATTTAAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
13 9 0.20
14 36 0.78
15 1 0.02
ACGTcount: A:0.18, C:0.01, G:0.31, T:0.49
Consensus pattern (14 bp):
TATGGTTTAGGGTT
Found at i:4869401 original size:7 final size:7
Alignment explanation
Indices: 4869371--4869422 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
4869361 CAAAAATATG
4869371 GTTTAG-
1 GTTTAGA
4869377 GTTTATG-
1 GTTTA-GA
*
4869384 GTTTAGG
1 GTTTAGA
*
4869391 GTTTACA
1 GTTTAGA
4869398 GTTTAGA
1 GTTTAGA
4869405 GTTTAGA
1 GTTTAGA
*
4869412 GTTTAGT
1 GTTTAGA
4869419 GTTT
1 GTTT
4869423 TAGGTTTGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
6 6 0.15
7 34 0.85
ACGTcount: A:0.19, C:0.02, G:0.29, T:0.50
Consensus pattern (7 bp):
GTTTAGA
Found at i:4869408 original size:21 final size:21
Alignment explanation
Indices: 4869384--4869458 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 21
4869374 TAGGTTTATG
4869384 GTTTAGGGTTTACAG-TTTAGA
1 GTTTAGGGTTTA-AGATTTAGA
* * *
4869405 GTTTAGAGTTTAGTGTTTTAG-
1 GTTTAGGGTTTA-AGATTTAGA
*
4869426 GTTTGGGGTTTAAGATTTA-A
1 GTTTAGGGTTTAAGATTTAGA
*
4869446 GATTTAAGGTTTA
1 G-TTTAGGGTTTA
4869459 TGGTATATAT
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
20 6 0.14
21 31 0.74
22 5 0.12
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.47
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATTTAGA
Found at i:4870016 original size:115 final size:115
Alignment explanation
Indices: 4869897--4870366 Score: 843
Period size: 115 Copynumber: 4.1 Consensus size: 115
4869887 GGCGCTTCAG
* * * * *** * *
4869897 AAAAAACGCCGCTAAAGGTCATATATTACCGGCATTTTGTAAAGAAACGCCGCAAATTTCCTTTA
1 AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
4869962 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
66 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
4870012 AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
1 AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
4870077 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
66 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
4870127 AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
1 AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
4870192 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
66 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
4870242 AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
1 AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
4870307 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCA-TT
66 ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
4870356 ATAAAAACGCC
1 A-AAAAACGCC
4870367 ACAAATTCGC
Statistics
Matches: 345, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
114 3 0.01
115 342 0.99
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (115 bp):
AAAAAACGCCGCTAAAAGTGATATATTACCTGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
ACTGTGACAAAGACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTT
Done.