Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 23 of 126
Found at i:6707235 original size:105 final size:104
Alignment explanation
Indices: 6707094--6707332 Score: 304
Period size: 105 Copynumber: 2.3 Consensus size: 104
6707084 AAAAAATTTT
* * * * *
6707094 AAAAAAAAAAATTTTGGTGGTGGCTTGTCAATGGCTGGCACCACCTTTAC-GAGAAATTTTTTTT
1 AAAAAAAAAAATTTGGGTGCTGGCCTGTTAAAGGCTGGCACCACCTTTACGGA-AAATTTTTTTT
* * * *
6707158 -GGGTGGTGGCCTGTCAATGGCCGGCACTACCTTTATGGG
65 CAGGTGGTGGCCTGTCAATGGCCGGCACCACCTATACGGG
6707197 AAAAAAAAACAATTTCGGGTGCTGGCCTGTTAAAGGCTGGCACCACCTTTACGGAAAATTTTTTT
1 AAAAAAAAA-AATTT-GGGTGCTGGCCTGTTAAAGGCTGGCACCACCTTTACGGAAAATTTTTTT
* * *
6707262 TCAGGTGTTGGCCTGTTAATGGCCGGCACCATCTATACGGG
64 TCAGGTGGTGGCCTGTCAATGGCCGGCACCACCTATACGGG
**
6707303 -AAAAAAAATTTTTGGGTGCTGGCCTGTTAA
1 AAAAAAAAAAATTTGGGTGCTGGCCTGTTAA
6707333 TAGCCGACAC
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
103 26 0.22
104 8 0.07
105 50 0.42
106 34 0.29
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (104 bp):
AAAAAAAAAAATTTGGGTGCTGGCCTGTTAAAGGCTGGCACCACCTTTACGGAAAATTTTTTTTC
AGGTGGTGGCCTGTCAATGGCCGGCACCACCTATACGGG
Found at i:6707290 original size:51 final size:51
Alignment explanation
Indices: 6707109--6707306 Score: 166
Period size: 51 Copynumber: 3.8 Consensus size: 51
6707099 AAAAAATTTT
* *
6707109 GGTGGTGGCTTGTCAATGGCTGGCACCACCTTTAC-GAGAAATTTTTTTT-G
1 GGTGGTGGCCTGTCAATGGCCGGCACCACCTTTACGGA-AAATTTTTTTTCG
* * *****
6707159 GGTGGTGGCCTGTCAATGGCCGGCACTACCTTTATGGGAAAAAAAAACAATTTCG
1 GGTGGTGGCCTGTCAATGGCCGGCACCACCTTTA-CGG---AAAATTTTTTTTCG
* * * * *
6707214 GGTGCTGGCCTGTTAAAGGCTGGCACCACCTTTACGGAAAATTTTTTTTCA
1 GGTGGTGGCCTGTCAATGGCCGGCACCACCTTTACGGAAAATTTTTTTTCG
* * * *
6707265 GGTGTTGGCCTGTTAATGGCCGGCACCATCTATACGGGAAAA
1 GGTGGTGGCCTGTCAATGGCCGGCACCACCTTTAC-GGAAAA
6707307 AAAATTTTTG
Statistics
Matches: 115, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
50 31 0.27
51 38 0.33
52 7 0.06
54 8 0.07
55 31 0.27
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTGGTGGCCTGTCAATGGCCGGCACCACCTTTACGGAAAATTTTTTTTCG
Found at i:6720939 original size:21 final size:23
Alignment explanation
Indices: 6720918--6720961 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
6720908 GTAAATTAAA
6720918 TTTAAATGAAATGAGG-GAAAAT
1 TTTAAATGAAATGAGGAGAAAAT
* *
6720940 TTTAATTTAAATGAGGAGAAAA
1 TTTAAATGAAATGAGGAGAAAA
6720962 AAATTGAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (23 bp):
TTTAAATGAAATGAGGAGAAAAT
Found at i:6721178 original size:55 final size:53
Alignment explanation
Indices: 6721020--6721213 Score: 282
Period size: 53 Copynumber: 3.6 Consensus size: 53
6721010 AAAATTTTGC
* *
6721020 ATTGAAAATAAATGAAATTGAATGAAAAAAAGTGTGTCAGGCCTTTGAAATAAA
1 ATTG-AAATAAATGAAATTGAATGAAAAAAAATGTGTCAGGCCTTTGAAATGAA
* * *
6721074 ATTGAGATAAAAGAAATTGAATGAAAAAAAAGGTGTCAGGCCTTTGAAATG-A
1 ATTGAAATAAATGAAATTGAATGAAAAAAAATGTGTCAGGCCTTTGAAATGAA
*
6721126 ATATGAAATAAATGAAATTGAATGAAAAAAAAATTGTGTCAGGCATTTGAAATGAA
1 AT-TGAAATAAATGAAATTGAATG-AAAAAAAA-TGTGTCAGGCCTTTGAAATGAA
6721182 ATTGAAATAAATGAAATTGAATGAAAAGAAAA
1 ATTGAAATAAATGAAATTGAATGAAAA-AAAA
6721214 AGGTTGAAAT
Statistics
Matches: 126, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
52 3 0.02
53 61 0.48
54 16 0.13
55 43 0.34
56 3 0.02
ACGTcount: A:0.52, C:0.04, G:0.19, T:0.25
Consensus pattern (53 bp):
ATTGAAATAAATGAAATTGAATGAAAAAAAATGTGTCAGGCCTTTGAAATGAA
Found at i:6721212 original size:15 final size:16
Alignment explanation
Indices: 6721173--6721212 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
6721163 GTCAGGCATT
6721173 TGAAATGAAATTGAAA
1 TGAAATGAAATTGAAA
6721189 T-AAATGAAATTG-AA
1 TGAAATGAAATTGAAA
*
6721203 TGAAAAGAAA
1 TGAAATGAAA
6721213 AAGGTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 18 0.82
16 1 0.05
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (16 bp):
TGAAATGAAATTGAAA
Found at i:6721229 original size:108 final size:104
Alignment explanation
Indices: 6721025--6721222 Score: 270
Period size: 108 Copynumber: 1.8 Consensus size: 104
6721015 TTTGCATTGA
* *
6721025 AAATAAATGAAATTGAATGAAAAAAAGTGTGTCAGGCCTTTGAAATAAAATTGAGATAAAAGAAA
1 AAATAAATGAAATTGAATGAAAAAAAGTGTGTCAGGCATTTGAAATAAAATTGAAATAAAAGAAA
**
6721090 TTGAATGAAAAAAAAGGTGTCAGGCCTTTGAAATGAATATG
66 TTGAATGAAAAAAAAGGTGAAAGG-C-TTGAAATGAATATG
* * *
6721131 AAATAAATGAAATTGAATGAAAAAAAAATTGTGTCAGGCATTTGAAATGAAATTGAAATAAATGA
1 AAATAAATGAAATTGAATG--AAAAAAAGTGTGTCAGGCATTTGAAATAAAATTGAAATAAAAGA
6721196 AATTGAATGAAAAGAAAAAGGTTGAAA
64 AATTGAATG-AAA-AAAAAGG-TGAAA
6721223 TGTTGAACAA
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
106 19 0.24
108 48 0.60
109 3 0.04
110 7 0.09
111 3 0.04
ACGTcount: A:0.52, C:0.04, G:0.20, T:0.24
Consensus pattern (104 bp):
AAATAAATGAAATTGAATGAAAAAAAGTGTGTCAGGCATTTGAAATAAAATTGAAATAAAAGAAA
TTGAATGAAAAAAAAGGTGAAAGGCTTGAAATGAATATG
Found at i:6727729 original size:254 final size:251
Alignment explanation
Indices: 6727242--6727745 Score: 823
Period size: 254 Copynumber: 2.0 Consensus size: 251
6727232 CCCAAGAATA
* * * *
6727242 AGTCATTCTCTTTGTGGAATGCTTGTGAGCTTGGTCAAACTCACAAACTGCCATTTATGTCCATT
1 AGTCATTCTCTTTGTGGAATACTTGTGAGCCTGGTAAAACTCACAAACTACCATTTATGTCCATT
* * *
6727307 AAATCAGTGTACTCTACTCTTGAGTTTATTGTTACTGAGTTGTGGGGTCTCGCCCCTTGTTACTC
66 AAATCAGTGTACTCTACTCTTGAGTTCATTGTTACTGACTTGTGGGGTCTAGCCCCTTGTTACTC
6727372 TTCAGGCTATCAATACTATATCTCCTTTGTGGATGCATTTTCAATTCATACTTGGATTAATTTTC
131 TTCAGGCTATCAATACTATATCTCCTTTGTGGATGCATTTTCAATTCATACTTGGATTAATTTTC
* *
6727437 TTAAGCAAAAGTTTGATGCATTACAAGCCTTCTTGTCTTTCAAAACACATGTTGAC
196 TTAAGAAAAAGTTTGATGCATTACAAGCCTTATTGTCTTTCAAAACACATGTTGAC
*
6727493 AGTCATTCTCTTTGTGTAATACTTGTGAGCCTGGTAAAAGC-CACAAACTACCATTTATGTCCAT
1 AGTCATTCTCTTTGTGGAATACTTGTGAGCCTGGTAAAA-CTCACAAACTACCATTTATGTCCAT
* *
6727557 TAAATCAGTGTACTCTGCTTCTCTTGAGTTCATTGTTACTGACTTGTGTGGTCTAG-CCCTTGTT
65 TAAATCAGTGTA--CT-CTACTCTTGAGTTCATTGTTACTGACTTGTGGGGTCTAGCCCCTTGTT
*
6727621 ACTCTTCAGGCTATCAATACTATATCTCCTTTGTGGATGCATTTTCAATTCATACTTGTATTTAA
127 ACTCTTCAGGCTATCAATACTATATCTCCTTTGTGGATGCATTTTCAATTCATACTTGGA-TTAA
*
6727686 TTTTCTTAAGAAAAAGTTTGATGCATTACAAGCCTTATTGTCTTTCTAAACACATGTTGA
191 TTTTCTTAAGAAAAAGTTTGATGCATTACAAGCCTTATTGTCTTTCAAAACACATGTTGA
6727746 ACTACAGTTG
Statistics
Matches: 234, Mismatches: 14, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
251 69 0.29
252 1 0.00
253 69 0.29
254 95 0.41
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.40
Consensus pattern (251 bp):
AGTCATTCTCTTTGTGGAATACTTGTGAGCCTGGTAAAACTCACAAACTACCATTTATGTCCATT
AAATCAGTGTACTCTACTCTTGAGTTCATTGTTACTGACTTGTGGGGTCTAGCCCCTTGTTACTC
TTCAGGCTATCAATACTATATCTCCTTTGTGGATGCATTTTCAATTCATACTTGGATTAATTTTC
TTAAGAAAAAGTTTGATGCATTACAAGCCTTATTGTCTTTCAAAACACATGTTGAC
Found at i:6729083 original size:13 final size:13
Alignment explanation
Indices: 6729061--6729091 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
6729051 AATATTTTCA
6729061 ATTTAATTAAAAT
1 ATTTAATTAAAAT
*
6729074 ATTTATTTAAAAT
1 ATTTAATTAAAAT
6729087 ATTTA
1 ATTTA
6729092 CAAAGGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTAATTAAAAT
Found at i:6732475 original size:40 final size:40
Alignment explanation
Indices: 6732430--6732522 Score: 127
Period size: 40 Copynumber: 2.3 Consensus size: 40
6732420 ATGCATATTA
6732430 TTAGCGGCGTTTTAT-T-AGAGTCGCCGCTAATGCTCAATTT
1 TTAGCGGCGTTTTATCTGA-AG-CGCCGCTAATGCTCAATTT
* *
6732470 TTAGCGGCGTTTTCTCTGAAGCGCCGCTAATGCTCGATTT
1 TTAGCGGCGTTTTATCTGAAGCGCCGCTAATGCTCAATTT
*
6732510 TTACCGGCGTTTT
1 TTAGCGGCGTTTT
6732523 TTATCCAAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
40 44 0.92
41 3 0.06
42 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.38
Consensus pattern (40 bp):
TTAGCGGCGTTTTATCTGAAGCGCCGCTAATGCTCAATTT
Found at i:6742193 original size:23 final size:23
Alignment explanation
Indices: 6742167--6742210 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
6742157 TAATTAATCC
* * *
6742167 TTAATTTACTTAATTAATCATGT
1 TTAATTAAATTAAGTAATCATGT
6742190 TTAATTAAATTAAGTAATCAT
1 TTAATTAAATTAAGTAATCAT
6742211 TAATAGTACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.48
Consensus pattern (23 bp):
TTAATTAAATTAAGTAATCATGT
Found at i:6751298 original size:25 final size:25
Alignment explanation
Indices: 6751121--6751300 Score: 79
Period size: 25 Copynumber: 7.3 Consensus size: 25
6751111 GAGCTTCCCA
* * *
6751121 ATATGGCTCACTTGAACTTCCCGAT
1 ATATGGCTCACATGAGCTTCCCGTT
**
6751146 ATATGGCT-ATTCA-GAGCTTCTTGTT
1 ATATGGCTCA--CATGAGCTTCCCGTT
* * * *
6751171 A-ATGGCTCTTC-GGAGCTACCCGAT
1 ATATGGCTC-ACATGAGCTTCCCGTT
* *
6751195 AT-TGGCTCGCATGAGCTT-CC-TG
1 ATATGGCTCACATGAGCTTCCCGTT
**
6751217 ACTATGGCTCTTATGAGCTTCCCGTT
1 A-TATGGCTCACATGAGCTTCCCGTT
* ** * * *
6751243 ATATAGC-CTGGATAAGCTTCCTGAT
1 ATATGGCTC-ACATGAGCTTCCCGTT
*
6751268 ACATGGCTCACATGAGCTTCCCGTT
1 ATATGGCTCACATGAGCTTCCCGTT
6751293 ATATGGCT
1 ATATGGCT
6751301 TAAGAGAGTG
Statistics
Matches: 110, Mismatches: 32, Indels: 26
0.65 0.19 0.15
Matches are distributed among these distances:
22 1 0.01
23 4 0.04
24 43 0.39
25 58 0.53
26 4 0.04
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (25 bp):
ATATGGCTCACATGAGCTTCCCGTT
Found at i:6753898 original size:131 final size:131
Alignment explanation
Indices: 6753526--6754171 Score: 744
Period size: 131 Copynumber: 4.9 Consensus size: 131
6753516 TTAAGGATAG
* * *
6753526 CGATAGAAAATCAGCTAACTTAGAGAAAATTGTTCATGATAGTAAATCAAATAAACTTA-AGTTG
1 CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGA-TTG
* * * * * * * * *
6753590 TGATCATAAATCAACAAACCTTAATAATGTCAGTTGTGATATTAAATCAGCAAACTGTTTTGAGT
65 TGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATCTTAAATCAGCGAGCTGTTTGGAGC
*
6753655 AG
130 AA
* * *
6753657 CGATAGAAAAT-AAGCTAACTTAGATTAAATTGTTCATGATAGTAAATC-AATGAACTTAGGTTT
1 CGATAGAAAATCAA-CTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGATTG
* * * * * * *
6753720 TGATCGTAAATTAGCGAGCCTGAATAATATCAATTGTGATCTTAAATCAACGAGCTATTTAGAGC
65 TGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATCTTAAATCAGCGAGCTGTTTGGAGC
6753785 AA
130 AA
* * *
6753787 TGATAGAAAATCAACTAACTTAAATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGACTGT
1 CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGATTGT
* * * * * ** *
6753852 AACCGTAAATCAACGAGCCCTAATAATATTAGTTGTGGTCTTAAATCAATGAGTTGTTTGGAGC-
66 GATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATCTTAAATCAGCGAGCTGTTTGGAGCA
6753916 A
131 A
* * * * * *
6753917 CTGATAGAAAATTAGCTAACTCAGATGAAATCGTTCATGATAATAAATCAAATGAACTTATG-TT
1 C-GATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTA-GATT
* * * * * *
6753981 GTGATCTTTAATCAGCGAGCCTTAATAATATTAGTTGTGATCTTAAATCAGCGAGTTGTCTGGAG
64 GTGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATCTTAAATCAGCGAGCTGTTTGGAG
6754046 CAA
129 CAA
* * * *
6754049 CGATAGAAAATCATCTAACTCAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGACTAT
1 CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGATTGT
* * *
6754114 GATTGTAAATCAACGAGCCTTAATAATATCAGTTGTGATTTTAAATCAGCGAGTTGTT
66 GATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATCTTAAATCAGCGAGCTGTT
6754172 CATGTTAAAC
Statistics
Matches: 433, Mismatches: 74, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
130 107 0.25
131 323 0.75
132 3 0.01
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (131 bp):
CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGATTGT
GATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATCTTAAATCAGCGAGCTGTTTGGAGCA
A
Found at i:6754099 original size:262 final size:261
Alignment explanation
Indices: 6753526--6754171 Score: 837
Period size: 262 Copynumber: 2.5 Consensus size: 261
6753516 TTAAGGATAG
* * * *
6753526 CGATAGAAAATCAGCTAACTTAGAGAAAATTGTTCATGATAGTAAATCAAATAAACTTA-AGTTG
1 CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGA-CTG
* * * * * ** * *
6753590 TGATCATAAATCAACAAACCTTAATAATGTCAGTTGTGATATTAAATCAGCAAACTGTTTTGAGT
65 TGATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATATTAAATCAGCGAGTTGTTTGGAGC
* * * * *
6753655 AGCGATAGAAAATAAGCTAACTTAGATTAAATTGTTCATGATAGTAAATCAATGAACTTAGGTTT
130 AGCGATAGAAAATAAGCTAACTCAGATGAAATCGTTCATGATAATAAATCAATGAACTTAGGTTG
* *
6753720 TGATCGTAAATTAGCGAGCCTGAATAATATCAATTGTGATCTTAAATCAACGAGCTATTTAGAGC
195 TGATCGTAAATCAGCGAGCCTGAATAATATCAATTGTGATCTTAAATCAACGAGCTATCTAGAGC
6753785 AA
260 AA
* *
6753787 TGATAGAAAATCAACTAACTTAAATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGACTGT
1 CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGACTGT
* * * * * * **
6753852 AACCGTAAATCAACGAGCCCTAATAATATTAGTTGTGGTCTTAAATCAATGAGTTGTTTGGAGCA
66 GATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATATTAAATCAGCGAGTTGTTTGGAGCA
* *
6753917 -CTGATAGAAAATTAGCTAACTCAGATGAAATCGTTCATGATAATAAATCAAATGAACTTATGTT
131 GC-GATAGAAAATAAGCTAACTCAGATGAAATCGTTCATGATAATAAATC-AATGAACTTAGGTT
* * * * * * * * *
6753981 GTGATCTTTAATCAGCGAGCCTTAATAATATTAGTTGTGATCTTAAATCAGCGAGTTGTCTGGAG
194 GTGATCGTAAATCAGCGAGCCTGAATAATATCAATTGTGATCTTAAATCAACGAGCTATCTAGAG
6754046 CAA
259 CAA
* * *
6754049 CGATAGAAAATCATCTAACTCAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGACTAT
1 CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGACTGT
* *
6754114 GATTGTAAATCAACGAGCCTTAATAATATCAGTTGTGATTTTAAATCAGCGAGTTGTT
66 GATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATATTAAATCAGCGAGTTGTT
6754172 CATGTTAAAC
Statistics
Matches: 327, Mismatches: 55, Indels: 5
0.84 0.14 0.01
Matches are distributed among these distances:
260 1 0.00
261 147 0.45
262 179 0.55
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (261 bp):
CGATAGAAAATCAACTAACTTAGATAAAATTGTTCATGATAGTAAATCAAATGAACTTAGACTGT
GATCGTAAATCAACGAGCCTTAATAATATCAGTTGTGATATTAAATCAGCGAGTTGTTTGGAGCA
GCGATAGAAAATAAGCTAACTCAGATGAAATCGTTCATGATAATAAATCAATGAACTTAGGTTGT
GATCGTAAATCAGCGAGCCTGAATAATATCAATTGTGATCTTAAATCAACGAGCTATCTAGAGCA
A
Found at i:6757340 original size:37 final size:37
Alignment explanation
Indices: 6757284--6757362 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
6757274 TTATTACGAA
** *
6757284 GTCTTACCCGGACGTAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
6757321 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
6757358 GTCTT
1 GTCTT
6757363 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:6757608 original size:49 final size:49
Alignment explanation
Indices: 6757481--6757844 Score: 573
Period size: 49 Copynumber: 7.6 Consensus size: 49
6757471 CCCTTCGGGA
* * * * *
6757481 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6757528 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6757575 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6757624 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6757673 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6757722 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6757771 CCTATTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6757819 CTTATCAC--ATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
6757845 ATGGGTTTAA
Statistics
Matches: 299, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 65 0.22
48 42 0.14
49 187 0.63
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6763459 original size:23 final size:23
Alignment explanation
Indices: 6763433--6763483 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
6763423 ATTTATTGGT
* *
6763433 AATATTTTATAAATTTTATTAAA
1 AATATTATATAAATTTCATTAAA
* *
6763456 AATATTATCTAAATTTCATTAAT
1 AATATTATATAAATTTCATTAAA
6763479 AATAT
1 AATAT
6763484 CATTATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
AATATTATATAAATTTCATTAAA
Found at i:6764636 original size:7 final size:7
Alignment explanation
Indices: 6764624--6764650 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
6764614 GCTTGCACCC
6764624 TCCCAAT
1 TCCCAAT
6764631 TCCCAAT
1 TCCCAAT
6764638 TCCCAAT
1 TCCCAAT
6764645 TCCCAA
1 TCCCAA
6764651 ATACCAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.44, G:0.00, T:0.26
Consensus pattern (7 bp):
TCCCAAT
Found at i:6766329 original size:20 final size:20
Alignment explanation
Indices: 6766304--6766342 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
6766294 ATAAATATAA
6766304 AAATTATTAAT-TTTTTTAAG
1 AAATTA-TAATATTTTTTAAG
6766324 AAATTATAATATTTTTTAA
1 AAATTATAATATTTTTTAA
6766343 TTATTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
AAATTATAATATTTTTTAAG
Found at i:6766706 original size:8 final size:8
Alignment explanation
Indices: 6766683--6766712 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
6766673 TAATTTTTAA
6766683 TTAATTTT
1 TTAATTTT
6766691 TTATATTTT
1 TTA-ATTTT
6766700 TTAATTTT
1 TTAATTTT
6766708 TTAAT
1 TTAAT
6766713 AATAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TTAATTTT
Found at i:6766868 original size:8 final size:8
Alignment explanation
Indices: 6766845--6766874 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
6766835 TAATTTTTAA
6766845 TTAATTTT
1 TTAATTTT
6766853 TTATATTTT
1 TTA-ATTTT
6766862 TTAATTTT
1 TTAATTTT
6766870 TTAAT
1 TTAAT
6766875 AATAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TTAATTTT
Found at i:6766879 original size:162 final size:161
Alignment explanation
Indices: 6766613--6766937 Score: 641
Period size: 162 Copynumber: 2.0 Consensus size: 161
6766603 ATATATAGTT
6766613 TTTACAATTTTTAAAATTAAAAAAAATCAATCATTATTTATAATTTCTTATAATTCTAAATAATT
1 TTTACAATTTTTAAAATTAAAAAAAATCAATCATTATTTATAATTTCTTATAATTCTAAATAATT
6766678 TTTAATTAATTTTTTATATTTTTTAATTTTTTAATAATAATTTAAGAAACTGCTCTAAAATGAAC
66 TTTAATTAATTTTTTATATTTTTTAATTTTTTAATAATAATTTAAGAAACTGCTCTAAAATGAAC
6766743 CTAGACAAATGGTTACCCAAGTTATTTGAGC
131 CTAGACAAATGGTTACCCAAGTTATTTGAGC
6766774 TTTACAATTTTTAAAATTAAAAAAAAATCAATCATTATTTATAATTTCTTATAATTCTAAATAAT
1 TTTACAATTTTTAAAATT-AAAAAAAATCAATCATTATTTATAATTTCTTATAATTCTAAATAAT
6766839 TTTTAATTAATTTTTTATATTTTTTAATTTTTTAATAATAATTTAAGAAACTGCTCTAAAATGAA
65 TTTTAATTAATTTTTTATATTTTTTAATTTTTTAATAATAATTTAAGAAACTGCTCTAAAATGAA
6766904 CCTAGACAAATGGTTACCCAAGTTATTTGAGC
130 CCTAGACAAATGGTTACCCAAGTTATTTGAGC
6766936 TT
1 TT
6766938 GGACAACTGT
Statistics
Matches: 163, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
161 18 0.11
162 145 0.89
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (161 bp):
TTTACAATTTTTAAAATTAAAAAAAATCAATCATTATTTATAATTTCTTATAATTCTAAATAATT
TTTAATTAATTTTTTATATTTTTTAATTTTTTAATAATAATTTAAGAAACTGCTCTAAAATGAAC
CTAGACAAATGGTTACCCAAGTTATTTGAGC
Found at i:6768271 original size:10 final size:10
Alignment explanation
Indices: 6768261--6768357 Score: 52
Period size: 10 Copynumber: 10.1 Consensus size: 10
6768251 AGAGGGAAAG
6768261 AAGAAGAAAGA
1 AAGAAG-AAGA
6768272 AAGAA-AAGGA
1 AAGAAGAA-GA
6768282 AAGAA-AAGGA
1 AAGAAGAA-GA
6768292 AAG-A-AAGA
1 AAGAAGAAGA
6768300 AA-AAGAAGGA
1 AAGAAGAA-GA
*
6768310 AAGAAAAAGA
1 AAGAAGAAGA
*
6768320 AATG-AGAAGCG
1 AA-GAAGAAG-A
6768331 AAG-AGAA-A
1 AAGAAGAAGA
6768339 AA-AA-AAGA
1 AAGAAGAAGA
6768347 AAGAAGAAGA
1 AAGAAGAAGA
6768357 A
1 A
6768358 GAGGGAAGGA
Statistics
Matches: 71, Mismatches: 4, Indels: 23
0.72 0.04 0.23
Matches are distributed among these distances:
7 2 0.03
8 11 0.15
9 9 0.13
10 37 0.52
11 12 0.17
ACGTcount: A:0.71, C:0.01, G:0.27, T:0.01
Consensus pattern (10 bp):
AAGAAGAAGA
Found at i:6768273 original size:14 final size:14
Alignment explanation
Indices: 6768256--6768357 Score: 68
Period size: 14 Copynumber: 6.9 Consensus size: 14
6768246 GAAGGAGAGG
6768256 GAAAGAAGAAGAAA
1 GAAAGAAGAAGAAA
6768270 GAAAGAA-AAGGAAA
1 GAAAGAAGAA-GAAA
*
6768284 GAAA-AGGAAAGAAA
1 GAAAGAAG-AAGAAA
6768298 GAAA-AAGAAGGAAA
1 GAAAGAAGAA-GAAA
6768312 GAAA-AAGAAATGAGAA
1 GAAAGAAG-AA-GA-AA
* *
6768328 GCGAAGAGAAAAAAAAA
1 --GAA-AGAAGAAGAAA
6768345 GAAAGAAGAAGAA
1 GAAAGAAGAAGAA
6768358 GAGGGAAGGA
Statistics
Matches: 71, Mismatches: 7, Indels: 20
0.72 0.07 0.20
Matches are distributed among these distances:
13 5 0.07
14 44 0.62
15 9 0.13
16 2 0.03
17 2 0.03
18 4 0.06
19 3 0.04
20 2 0.03
ACGTcount: A:0.71, C:0.01, G:0.27, T:0.01
Consensus pattern (14 bp):
GAAAGAAGAAGAAA
Found at i:6768282 original size:24 final size:24
Alignment explanation
Indices: 6768255--6768351 Score: 90
Period size: 24 Copynumber: 3.9 Consensus size: 24
6768245 AGAAGGAGAG
6768255 GGAAAGAAGAAGAAAGAAAGAAAA
1 GGAAAGAAGAAGAAAGAAAGAAAA
6768279 GGAAAGAA-AAGGAAAGAAAGAAAA
1 GGAAAGAAGAA-GAAAGAAAGAAAA
* * *
6768303 AGAAGGAAAGAA-AAAGAAATGAGAA
1 GGAAAG-AAGAAGAAAGAAA-GAAAA
* *
6768328 GCGAAGAGAAAAAAAAAGAAAGAA
1 G-GAA-AGAAGAAGAAAGAAAGAA
6768352 GAAGAAGAGG
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
23 2 0.03
24 32 0.54
25 6 0.10
26 11 0.19
27 8 0.14
ACGTcount: A:0.70, C:0.01, G:0.28, T:0.01
Consensus pattern (24 bp):
GGAAAGAAGAAGAAAGAAAGAAAA
Found at i:6771176 original size:60 final size:63
Alignment explanation
Indices: 6771112--6771228 Score: 152
Period size: 63 Copynumber: 1.9 Consensus size: 63
6771102 ATTAATTAGG
* * *
6771112 ATTTTACTAAA-AATAATAACTAATTAA-C-T-ATAATAATACTAGTTTTTTACTAACTAGTTT
1 ATTTTACTAAATAAAAATAA-TAACTAACCATAATAATAATACTAGTTATTTACTAACTAGTTT
**
6771172 ATTTTGGTAAATAAAAATAATAACTAACCATAATAATAATACTAGTTATTTACTAAC
1 ATTTTACTAAATAAAAATAATAACTAACCATAATAATAATACTAGTTATTTACTAAC
6771229 AATAATACTA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
60 15 0.31
61 8 0.17
62 1 0.02
63 24 0.50
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.39
Consensus pattern (63 bp):
ATTTTACTAAATAAAAATAATAACTAACCATAATAATAATACTAGTTATTTACTAACTAGTTT
Found at i:6771286 original size:3 final size:3
Alignment explanation
Indices: 6771268--6771320 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
6771258 AATAACATCT
* *
6771268 TAA TAC TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6771316 TAA TA
1 TAA TA
6771321 CTAACTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:6771615 original size:27 final size:27
Alignment explanation
Indices: 6771549--6771615 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
6771539 GTCCCGCCAA
*
6771549 TGGTGCCGCCAACTAGTATGGCACCAT
1 TGGTGCCGCCAATTAGTATGGCACCAT
* *
6771576 CGGTGCCGCCAATTAGT-TAGGCACCTT
1 TGGTGCCGCCAATTAGTAT-GGCACCAT
6771603 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
6771616 CAAAAACCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.24
Consensus pattern (27 bp):
TGGTGCCGCCAATTAGTATGGCACCAT
Found at i:6777232 original size:13 final size:13
Alignment explanation
Indices: 6777214--6777239 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6777204 TACAAACTAT
6777214 CTCCCTTTTTACC
1 CTCCCTTTTTACC
6777227 CTCCCTTTTTACC
1 CTCCCTTTTTACC
6777240 TTACCCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.00, T:0.46
Consensus pattern (13 bp):
CTCCCTTTTTACC
Found at i:6779641 original size:45 final size:44
Alignment explanation
Indices: 6779579--6779671 Score: 100
Period size: 45 Copynumber: 2.1 Consensus size: 44
6779569 TGAATCTGCT
* ** *
6779579 ATATCCATGAAGTTTCTTCTATGAA-TCTGCATGTATGAGTCCTCC
1 ATATCCATGAAGTTTCTTATACAAATTC-GCATGTACGAGTCCT-C
*
6779624 ATATCTATGAA-TCTTCTTATACAAATTCGCATGTACGAGTCCTC
1 ATATCCATGAAGT-TTCTTATACAAATTCGCATGTACGAGTCCTC
6779668 ATAT
1 ATAT
6779672 AAGAATCTGC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
44 6 0.15
45 33 0.80
46 2 0.05
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.38
Consensus pattern (44 bp):
ATATCCATGAAGTTTCTTATACAAATTCGCATGTACGAGTCCTC
Found at i:6781848 original size:3 final size:3
Alignment explanation
Indices: 6781840--6781866 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6781830 AAAGTGAAAT
6781840 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
6781867 TAATAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6785570 original size:19 final size:18
Alignment explanation
Indices: 6785543--6785585 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
6785533 TTATTTAAAC
* **
6785543 TAAAATCAATAATTTATT
1 TAAAATCAAAAATAAATT
6785561 TAAAACTCAAAAATAAATT
1 TAAAA-TCAAAAATAAATT
6785580 TAAAAT
1 TAAAAT
6785586 ATTTTTTGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAATCAAAAATAAATT
Found at i:6785579 original size:23 final size:23
Alignment explanation
Indices: 6785527--6785581 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
6785517 TATTGAATGT
6785527 AATAAA-TTATTTAAACTAAAATC
1 AATAAATTTATTTAAACTAAAA-C
*
6785550 AAT-AATTTATTTAAAACTCAAA-
1 AATAAATTTATTT-AAACTAAAAC
6785572 AATAAATTTA
1 AATAAATTTA
6785582 AAATATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 5 0.18
23 15 0.54
24 8 0.29
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.36
Consensus pattern (23 bp):
AATAAATTTATTTAAACTAAAAC
Found at i:6786714 original size:45 final size:45
Alignment explanation
Indices: 6786637--6786745 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
6786627 TACCTCTGGT
* * * ** *
6786637 TGTGGATTACATAGCAAATAACTCGCAGATGGAATTTGCCTCTGCC
1 TGTGGA-TACACAGCAAATAACCCGCAAATGGAACCTGCCTCTGAC
* *
6786683 TGTGGATACACAGCAAATAACCCGTAAATGGAACCTGCCTTTGAC
1 TGTGGATACACAGCAAATAACCCGCAAATGGAACCTGCCTCTGAC
*
6786728 TGTGGATACACAACAAAT
1 TGTGGATACACAGCAAAT
6786746 TTTGCAGATA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 48 0.89
46 6 0.11
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (45 bp):
TGTGGATACACAGCAAATAACCCGCAAATGGAACCTGCCTCTGAC
Found at i:6786952 original size:34 final size:34
Alignment explanation
Indices: 6786819--6786940 Score: 93
Period size: 34 Copynumber: 3.6 Consensus size: 34
6786809 GCATGCTCAA
* ** * *
6786819 AACAGATCAATATGATAGCATTTAATATGCTTTT
1 AACAGATCAATATAATAGCAAATAGTATGCTTAT
* * * * * *
6786853 AACAAAACAATACAACAAC-AATCAATATGCTTAT
1 AACAGATCAATATAATAGCAAAT-AGTATGCTTAT
* *
6786887 AACAGTTCGATATAATAGCAAATAGTATGCTTAT
1 AACAGATCAATATAATAGCAAATAGTATGCTTAT
* *
6786921 AACAGATCAATTTATTAGCA
1 AACAGATCAATATAATAGCA
6786941 TAAGTCATGC
Statistics
Matches: 65, Mismatches: 21, Indels: 4
0.72 0.23 0.04
Matches are distributed among these distances:
33 1 0.02
34 61 0.94
35 3 0.05
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (34 bp):
AACAGATCAATATAATAGCAAATAGTATGCTTAT
Found at i:6790926 original size:4 final size:4
Alignment explanation
Indices: 6790917--6790943 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6790907 TTTCTAATGT
6790917 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
6790944 TACTTACTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:6791033 original size:9 final size:9
Alignment explanation
Indices: 6791019--6791065 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
6791009 TCTAATCTTC
*
6791019 ATTACTACT
1 ATTACTATT
6791028 ATTACTATT
1 ATTACTATT
* *
6791037 GTTAATATT
1 ATTACTATT
6791046 ATTACTATT
1 ATTACTATT
*
6791055 ATTATTATT
1 ATTACTATT
6791064 AT
1 AT
6791066 GATTATTACT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (9 bp):
ATTACTATT
Found at i:6791035 original size:6 final size:6
Alignment explanation
Indices: 6791027--6791086 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
6791017 TCATTACTAC
* * * * * *
6791027 TATTAC TATTGT TAATAT TATTAC TATTAT TATTAT TATGAT TATTAC
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
*
6791075 TATTGT TATTAT
1 TATTAT TATTAT
6791087 ATTTTTATAT
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (6 bp):
TATTAT
Found at i:6791051 original size:24 final size:24
Alignment explanation
Indices: 6791019--6791078 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
6791009 TCTAATCTTC
* *
6791019 ATTACTACTATTACTATTGTTAAT-
1 ATTATTACTATTACTATTATT-ATG
*
6791043 ATTATTACTATTATTATTATTATG
1 ATTATTACTATTACTATTATTATG
6791067 ATTATTACTATT
1 ATTATTACTATT
6791079 GTTATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 2 0.06
24 30 0.94
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.55
Consensus pattern (24 bp):
ATTATTACTATTACTATTATTATG
Found at i:6793524 original size:12 final size:12
Alignment explanation
Indices: 6793507--6793531 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6793497 AAGTTGAGCC
6793507 TATCCCTTCAGA
1 TATCCCTTCAGA
6793519 TATCCCTTCAGA
1 TATCCCTTCAGA
6793531 T
1 T
6793532 TTTGTAGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCCCTTCAGA
Found at i:6794275 original size:132 final size:132
Alignment explanation
Indices: 6794033--6795030 Score: 1405
Period size: 132 Copynumber: 7.6 Consensus size: 132
6794023 AGAATAAACC
* * *
6794033 GTTGAAGATTGCAGATTCTGTCTCCCTGAGCAGTAGTAGAGCAGATCGAAGATGGCGAATCTTAT
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * * * *
6794098 CTTCCCAAGATCGTCGG-GAAGTAGATTTAAGCCATTAATCATATCTCCCTGAATAGCAGTGGAG
66 CTTCCCAAGATAGT-GGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAACAGCAGTGGAG
6794162 TAG
130 TAG
* * *
6794165 GTTGAAGATTACAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTAT
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
*
6794230 CTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTAGG-G
66 CTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAACAGCAGT-GGAG
6794294 TAG
130 TAG
* * * * * *
6794297 GTTGAAGATTGCAGGTTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAAATGGTGAATCTTAT
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * * *
6794362 CTTCCCAAGATAGTGGAGAAGCATATTTAGGCCATTAGTCCTATCTCCTTGAACACCAGTGGAGT
66 CTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAACAGCAGTGGAGT
6794427 AG
131 AG
* * *
6794429 GTTGAAGATTGCAGATTCTGTGTCCCTAAGCAGTAGTGGAGCAGAT-GAAAGACGGCGAATCTTA
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGATGGTGAATCTTA
* *
6794493 TCTTCCCAAGATAGTGGAGAAGCAGATTTAAGTCATTAATCCTATCTCCCT-AAGCAGCAGTGGA
65 TCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAA-CAGCAGTGGA
6794557 GTAG
129 GTAG
* * * *
6794561 GTTGAAGATTGCAGATTCTATCTCCCTAAGCAATAGTAGAGCAGATCGAAAATGGTGAATCTTAT
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * ** *
6794626 CTTCCCAAGATAATGGAGAAGCAGATTTAGGCCATTAGTCCTATCTCCCTGAGGAGCAGTAGAGT
66 CTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAACAGCAGTGGAGT
6794691 AG
131 AG
*
6794693 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAACATGGTGAATCTTAT
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
*
6794758 CTTCCCAAGATAGTGGAGAAGCAGATTTGAA-CCATTAGTCCTATCTCCCT-AAGCAGCTGTGGA
66 CTTCCCAAGATAGTGGAGAAGCAGATTT-AAGCCATTAGTCCTATCTCCCTGAA-CAGCAGTGGA
6794821 GTAG
129 GTAG
* * *
6794825 GTTGAAGATTGTAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTAAATCTTAT
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
* * *
6794890 CTTCCTAAGATAGTGGAGAAGCAGATTTAAGCCATTAATCCTATCTCCCTGAGCAGCAGTGGAGT
66 CTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAACAGCAGTGGAGT
*
6794955 GG
131 AG
* * * * * * * * *
6794957 GTTGAATATTGTAGATCCTGTCTCCTTAGGCAGTAGTGAAGCAGATCAAAGACGGTAAATCTTAT
1 GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
*
6795022 CTTTCCAAG
66 CTTCCCAAG
6795031 CGGAGCAGAT
Statistics
Matches: 775, Mismatches: 80, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
131 9 0.01
132 760 0.98
133 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
GTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT
CTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAACAGCAGTGGAGT
AG
Found at i:6795109 original size:44 final size:45
Alignment explanation
Indices: 6795047--6795141 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 45
6795037 AGATCAAGAC
*
6795047 TGAAGATAACCAACCTTATCTCCCTGAAGTTACAGTGGAGCT-GGT
1 TGAAGATAACCAACCTTATCTCCCTAAAGTTACAGTGGAG-TAGGT
* * * *
6795092 TGAAGAT-ATCAATCTTATCTCCCTAAAGTTGCAGTGTAGTAGGT
1 TGAAGATAACCAACCTTATCTCCCTAAAGTTACAGTGGAGTAGGT
6795136 TGAAGA
1 TGAAGA
6795142 AAGTGAGCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 36 0.82
45 7 0.16
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (45 bp):
TGAAGATAACCAACCTTATCTCCCTAAAGTTACAGTGGAGTAGGT
Found at i:6796687 original size:9 final size:9
Alignment explanation
Indices: 6796673--6796719 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
6796663 TCTAATCTTC
*
6796673 ATTACTACT
1 ATTACTATT
6796682 ATTACTATT
1 ATTACTATT
* *
6796691 GTTAATATT
1 ATTACTATT
6796700 ATTACTATT
1 ATTACTATT
*
6796709 ATTATTATT
1 ATTACTATT
6796718 AT
1 AT
6796720 GATTATTACT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (9 bp):
ATTACTATT
Found at i:6796689 original size:6 final size:6
Alignment explanation
Indices: 6796681--6796740 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
6796671 TCATTACTAC
* * * * * *
6796681 TATTAC TATTGT TAATAT TATTAC TATTAT TATTAT TATGAT TATTAC
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
*
6796729 TATTGT TATTAT
1 TATTAT TATTAT
6796741 ATTTTTATAT
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (6 bp):
TATTAT
Found at i:6796705 original size:24 final size:24
Alignment explanation
Indices: 6796673--6796732 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
6796663 TCTAATCTTC
* *
6796673 ATTACTACTATTACTATTGTTAAT-
1 ATTATTACTATTACTATTATT-ATG
*
6796697 ATTATTACTATTATTATTATTATG
1 ATTATTACTATTACTATTATTATG
6796721 ATTATTACTATT
1 ATTATTACTATT
6796733 GTTATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 2 0.06
24 30 0.94
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.55
Consensus pattern (24 bp):
ATTATTACTATTACTATTATTATG
Found at i:6803911 original size:34 final size:35
Alignment explanation
Indices: 6803848--6803934 Score: 95
Period size: 34 Copynumber: 2.5 Consensus size: 35
6803838 ATAATTTTTT
* * *
6803848 ACCTTGAACCATAAACCTTGAACCTTGAATTTCAA
1 ACCTTGAACCATAAACCTCGAACCATGAATTTAAA
* *
6803883 ACCTTG-ACCCTAACCCTCGAACCATGAATTTAAA
1 ACCTTGAACCATAAACCTCGAACCATGAATTTAAA
* * *
6803917 ACTTTAAACCCTAAACCT
1 ACCTTGAACCATAAACCT
6803935 TAAAAATTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 27 0.63
35 16 0.37
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.26
Consensus pattern (35 bp):
ACCTTGAACCATAAACCTCGAACCATGAATTTAAA
Found at i:6803948 original size:23 final size:22
Alignment explanation
Indices: 6803912--6803961 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
6803902 AACCATGAAT
*
6803912 TTAAAACTTTAAACCCTAAACC
1 TTAAAAATTTAAACCCTAAACC
*
6803934 TTAAAAATTTCAAACCTTAAACC
1 TTAAAAATTT-AAACCCTAAACC
*
6803957 CTAAA
1 TTAAA
6803962 CTTTGAACTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (22 bp):
TTAAAAATTTAAACCCTAAACC
Found at i:6805678 original size:22 final size:21
Alignment explanation
Indices: 6805648--6805703 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
6805638 ATTTTTCCCC
* *
6805648 AAAT-CGAAATCCCCACATCG
1 AAATCCGAAATCCCCAAATCA
6805668 AAATCCCGAAATCCCCAAATCA
1 AAAT-CCGAAATCCCCAAATCA
*
6805690 AAATCCAAAATCCC
1 AAATCCGAAATCCC
6805704 TTTGATTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.13
21 9 0.29
22 18 0.58
ACGTcount: A:0.45, C:0.36, G:0.05, T:0.14
Consensus pattern (21 bp):
AAATCCGAAATCCCCAAATCA
Found at i:6805695 original size:14 final size:14
Alignment explanation
Indices: 6805643--6805680 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
6805633 CCTTAATTTT
6805643 TCCCCAAATCGAAA
1 TCCCCAAATCGAAA
*
6805657 TCCCCACATCGAAA
1 TCCCCAAATCGAAA
*
6805671 TCCCGAAATC
1 TCCCCAAATC
6805681 CCCAAATCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.39, G:0.08, T:0.16
Consensus pattern (14 bp):
TCCCCAAATCGAAA
Found at i:6808962 original size:17 final size:16
Alignment explanation
Indices: 6808942--6808975 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
6808932 CATTTTTCAT
6808942 TTTTGTTATTTATTTTA
1 TTTTGTTATTT-TTTTA
*
6808959 TTTTTTTATTTTTTTA
1 TTTTGTTATTTTTTTA
6808975 T
1 T
6808976 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTGTTATTTTTTTA
Found at i:6808967 original size:8 final size:8
Alignment explanation
Indices: 6808934--6808975 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
6808924 CCTTTGTTCA
*
6808934 TTTTTCAT
1 TTTTTTAT
6808942 TTTTGTTAT
1 TTTT-TTAT
6808951 TTATTTTAT
1 TT-TTTTAT
6808960 TTTTTTAT
1 TTTTTTAT
6808968 TTTTTTAT
1 TTTTTTAT
6808976 AAATCTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 18 0.58
9 11 0.35
10 2 0.06
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.81
Consensus pattern (8 bp):
TTTTTTAT
Found at i:6810004 original size:20 final size:20
Alignment explanation
Indices: 6809967--6810006 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6809957 AAGATTAATA
*
6809967 TGATATTTATTTTCATACAT
1 TGATATTTATTATCATACAT
6809987 TGATATTTATATAT-ATACAT
1 TGATATTTAT-TATCATACAT
6810007 AATTTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (20 bp):
TGATATTTATTATCATACAT
Found at i:6819248 original size:25 final size:22
Alignment explanation
Indices: 6819194--6819248 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
6819184 TATTATTTTA
* *
6819194 TGTAAATATTTTCTAAATTTAT
1 TGTATATATTTTCTAAAATTAT
*
6819216 TGTGTATATTTTCTTTAAAATTAT
1 TGTATATATTTTC--TAAAATTAT
6819240 TCGTATATA
1 T-GTATATA
6819249 GCTTGGCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 11 0.42
24 9 0.35
25 6 0.23
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
TGTATATATTTTCTAAAATTAT
Found at i:6821270 original size:20 final size:20
Alignment explanation
Indices: 6821234--6821277 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
6821224 ATTTGGAATT
*
6821234 ATTTATTATATGTTTTTCTA
1 ATTTATTATATGATTTTCTA
6821254 ATTT-TTATCATGATTTTCTA
1 ATTTATTAT-ATGATTTTCTA
6821274 ATTT
1 ATTT
6821278 CATGATGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.64
Consensus pattern (20 bp):
ATTTATTATATGATTTTCTA
Found at i:6822078 original size:41 final size:41
Alignment explanation
Indices: 6821991--6822068 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
6821981 TAAAAATACT
*
6821991 AAAAATATATTTTTGTAATTTTTATATATTTTTAATTTTAA
1 AAAAATATATTTTTATAATTTTTATATATTTTTAATTTTAA
* *
6822032 AAAAATGTATTTTTATAATTTTTTTGA-ATTTTTAATT
1 AAAAATATATTTTTATAATTTTTAT-ATATTTTTAATT
6822069 ATTTTAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 32 0.97
42 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (41 bp):
AAAAATATATTTTTATAATTTTTATATATTTTTAATTTTAA
Found at i:6825809 original size:24 final size:23
Alignment explanation
Indices: 6825777--6825821 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
6825767 TTTTTTATTC
* *
6825777 TATTTTTTATATTATATTATTTAA
1 TATTCTTTATAATAT-TTATTTAA
6825801 TATTCTTTATAATATTTATTT
1 TATTCTTTATAATATTTATTT
6825822 TGATAATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TATTCTTTATAATATTTATTTAA
Found at i:6827795 original size:3 final size:3
Alignment explanation
Indices: 6827787--6827813 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6827777 GGAGTATTAA
6827787 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
6827814 TAAGAAGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6832902 original size:46 final size:47
Alignment explanation
Indices: 6832819--6832913 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
6832809 ATTCCCTACT
6832819 AACAATCCTCTTAAGAAAAAAGATAAATTAAAAAAAAAAGCACTCTC
1 AACAATCCTCTTAAGAAAAAAGATAAATTAAAAAAAAAAGCACTCTC
6832866 AACAATCCTCTTAAGAAAAAAGATAAATT-AAAAAAAAAGCACTCTC
1 AACAATCCTCTTAAGAAAAAAGATAAATTAAAAAAAAAAGCACTCTC
6832912 AA
1 AA
6832914 AACAGAGAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 19 0.40
47 29 0.60
ACGTcount: A:0.58, C:0.17, G:0.06, T:0.19
Consensus pattern (47 bp):
AACAATCCTCTTAAGAAAAAAGATAAATTAAAAAAAAAAGCACTCTC
Found at i:6835965 original size:6 final size:6
Alignment explanation
Indices: 6835954--6835994 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
6835944 AGGTTTAAAA
*
6835954 AAAAGG AAAAGG AAAAGA AAAAGG AAAAGG AAAAGGG AAAA
1 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAA-GG AAAA
6835995 ATATCTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:6835976 original size:18 final size:18
Alignment explanation
Indices: 6835953--6835988 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6835943 AAGGTTTAAA
6835953 AAAAAGGAAAAGGAAAAG
1 AAAAAGGAAAAGGAAAAG
6835971 AAAAAGGAAAAGGAAAAG
1 AAAAAGGAAAAGGAAAAG
6835989 GGAAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AAAAAGGAAAAGGAAAAG
Found at i:6836364 original size:19 final size:19
Alignment explanation
Indices: 6836332--6836370 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
6836322 AAAAATTACA
6836332 AAAAAATTCAAAATATTTAT
1 AAAAAATTCAAAAT-TTTAT
*
6836352 AAAAATTTC-AAATTTTAT
1 AAAAAATTCAAAATTTTAT
6836370 A
1 A
6836371 TATTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAAATTCAAAATTTTAT
Found at i:6840117 original size:30 final size:30
Alignment explanation
Indices: 6840077--6840192 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 30
6840067 TTACAAATAA
*
6840077 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCACT
* **
6840107 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCACT
* * *
6840137 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCACT
* * *
6840167 AAATTTTATTTT-AACCCTAAATTTTC
1 AAATTTCATTTTGACCCCTAAACTTTC
6840193 TAAAAATTGC
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.22
30 57 0.78
ACGTcount: A:0.30, C:0.22, G:0.03, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCACT
Found at i:6840206 original size:29 final size:29
Alignment explanation
Indices: 6840074--6840206 Score: 85
Period size: 30 Copynumber: 4.5 Consensus size: 29
6840064 AATTTACAAA
* *
6840074 TAAAAATTGCATTTTGACCCCTAAACTTTTCC
1 TAAAAATTTCATTTT-AACCCTAAAC-TTT-C
*
6840106 T--AAATTTCATTTTGACCCTTAAACTTTC
1 TAAAAATTTCATTTTAACCC-TAAACTTTC
** *
6840134 TTTAAATTTCA-CTTAGACCCCTAAACTTTC
1 TAAAAATTTCATTTTA-A-CCCTAAACTTTC
* * *
6840164 -ATTAAATTTTATTTTAACCCTAAATTTTC
1 TA-AAAATTTCATTTTAACCCTAAACTTTC
*
6840193 TAAAAATTGCATTT
1 TAAAAATTTCATTT
6840207 AGCCCCAGAA
Statistics
Matches: 81, Mismatches: 12, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
28 2 0.02
29 28 0.35
30 44 0.54
31 6 0.07
32 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.04, T:0.44
Consensus pattern (29 bp):
TAAAAATTTCATTTTAACCCTAAACTTTC
Found at i:6840453 original size:18 final size:18
Alignment explanation
Indices: 6840427--6840469 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
6840417 AAAGTTTCGA
*
6840427 AAAAAAGAAAAAAGAAGG
1 AAAAGAGAAAAAAGAAGG
* *
6840445 AAAAGAGAAGAGAGAAGG
1 AAAAGAGAAAAAAGAAGG
*
6840463 AAGAGAG
1 AAAAGAG
6840470 GAGGGGAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AAAAGAGAAAAAAGAAGG
Found at i:6852695 original size:71 final size:72
Alignment explanation
Indices: 6852573--6852716 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 72
6852563 CTTTCCAAGG
**
6852573 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-T
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
*
6852637 TTTTTAA
66 GTTTTAA
** * *
6852644 AAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
6852708 TGTTTTAA
65 TGTTTTAA
6852716 A
1 A
6852717 TTGGCTCATA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
70 1 0.02
71 55 0.86
72 8 0.12
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.34
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTTAA
Found at i:6852748 original size:69 final size:69
Alignment explanation
Indices: 6852573--6852748 Score: 201
Period size: 71 Copynumber: 2.5 Consensus size: 69
6852563 CTTTCCAAGG
* ** *
6852573 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
6852638 TTTT
66 TTTT
* ** * *
6852642 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTT
1 --AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT
6852707 ATGTTTT
64 -TGTTTT
*** *
6852714 -AAATTGGCTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
6852749 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 30 0.33
71 55 0.61
72 5 0.06
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:6852890 original size:71 final size:69
Alignment explanation
Indices: 6852748--6852941 Score: 185
Period size: 71 Copynumber: 2.7 Consensus size: 69
6852738 GAGTTAAGCC
* * * * **
6852748 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
1 TTTTAATTTATG--TTT-AAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCAAGACACGCC
6852813 GAGGTAT
63 GAGGTAT
** *
6852820 TTTTAAATTT-T-TTTAAAAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGGGCACGC
1 TTTT-AATTTATGTTT---AAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCAAGACACGC
*
6852883 CGTGGTAT
62 CGAGGTAT
* * * *
6852891 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTATGTTTAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCT
6852942 TTTAATTTTT
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
69 36 0.35
70 4 0.04
71 50 0.49
72 8 0.08
73 5 0.05
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (69 bp):
TTTTAATTTATGTTTAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCAAGACACGCCGAG
GTAT
Found at i:6852902 original size:193 final size:193
Alignment explanation
Indices: 6852573--6853064 Score: 794
Period size: 193 Copynumber: 2.5 Consensus size: 193
6852563 CTTTCCAAGG
* *
6852573 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAA-ATTT
* *
6852638 TTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
65 TTTTAAAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGGGCACGCCGAGGTATTTTTA
*
6852703 GTTTATGTTTTAAATTGGCTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
6852766 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
*
6852831 TTTAAAAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGGGCACGCCGTGGTATTTTTA
66 TTT-AAAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGGGCACGCCGAGGTATTTTTA
6852896 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
** * ** *
6852960 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT-AGTTTA
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT-
* *
6853024 TGTTT--TAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCT
65 T-TTTAAAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCT
6853065 TTTAATTTTT
Statistics
Matches: 281, Mismatches: 14, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
192 41 0.15
193 183 0.65
194 54 0.19
195 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (193 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
TTTAAAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGGGCACGCCGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
Found at i:6852977 original size:54 final size:54
Alignment explanation
Indices: 6852913--6853118 Score: 169
Period size: 54 Copynumber: 3.5 Consensus size: 54
6852903 TTTTAAATTG
6852913 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
** * *** ***
6852967 ACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA---ATTTTT-GTTT-T-TCAAAA
*
6853032 ATTA
51 ATCA
6853036 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
* *
6853090 ACTCATATTGCAAGAGGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
6853119 CGGCTCACAT
Statistics
Matches: 115, Mismatches: 22, Indels: 30
0.69 0.13 0.18
Matches are distributed among these distances:
54 59 0.51
55 1 0.01
56 4 0.03
57 6 0.05
60 1 0.01
63 1 0.01
66 6 0.05
67 4 0.03
68 1 0.01
69 32 0.28
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (54 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
Found at i:6852982 original size:123 final size:123
Alignment explanation
Indices: 6852836--6853154 Score: 512
Period size: 123 Copynumber: 2.6 Consensus size: 123
6852826 ATTTTTTTAA
* * *
6852836 AAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGGGCACGCCGTGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
*
6852901 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
6852959 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
6853024 TGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* * ** * * *
6853082 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTATTTTTAGTT
6853147 TATGTTTT
64 TATGTTTT
6853155 TTTCAATCTA
Statistics
Matches: 181, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
123 158 0.87
125 23 0.13
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.37
Consensus pattern (123 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:6853159 original size:16 final size:17
Alignment explanation
Indices: 6853138--6853171 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
6853128 TGCTGAGGTA
*
6853138 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
6853154 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
6853171 T
1 T
6853172 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:6853282 original size:176 final size:181
Alignment explanation
Indices: 6853077--6853489 Score: 475
Period size: 193 Copynumber: 2.2 Consensus size: 181
6853067 TAATTTTTGT
*
6853077 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTT
* *
6853141 TC-AA-TTT-A-TGTTTTTTTCAATCTATGCT-TTTC-AAAAATCAACTTATATTGCGAGAGGTG
64 TCAAATTTTAATTGTTTTTTT-AATCTATG-TGTTTCAAAAAATCAACTCATATTGCAAGAGGTG
*
6853200 AGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTGCTTTACTAA-TTCTAC
127 AGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTAC-AATTTCTAC
* *
6853255 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
* *
6853319 AAATTCTGTTTTTAATTTCTGTTTTTTTAATTTCTGTGTTTCAAAAAAAAAATCAACTCATATTG
66 AAA------TTTTAA--T-TGTTTTTTTAATCTATGTGTTTC----AAAAAATCAACTCATATTG
* * **
6853384 CAAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTACTTTTCAATTTCTGT
118 CAAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTACAATTTCTAC
*
6853448 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
6853490 TTTAATTTCT
Statistics
Matches: 198, Mismatches: 14, Indels: 29
0.82 0.06 0.12
Matches are distributed among these distances:
176 52 0.26
177 5 0.03
178 5 0.03
184 3 0.02
185 1 0.01
187 1 0.01
188 10 0.05
189 9 0.05
192 2 0.01
193 77 0.39
195 33 0.17
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (181 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
AAATTTTAATTGTTTTTTTAATCTATGTGTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTT
GAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTACAATTTCTAC
Found at i:6853335 original size:85 final size:88
Alignment explanation
Indices: 6853077--6853335 Score: 309
Period size: 91 Copynumber: 2.9 Consensus size: 88
6853067 TAATTTTTGT
*
6853077 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTT
*
6853141 TCAATTTATGTTTTTTTCAA-TCTATGC
64 TCAATTTCTG-TTTTTT-AATTCTA-GC
* *
6853168 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACACGCTGAGGTATTT
**
6853230 TCAATTTCTGCTTTACTAATTCTA-C
64 TCAATTTCTG-TTTTTTAATTCTAGC
* *
6853255 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
*
6853319 AAATTCTG-TTTTTAATT
66 AATTTCTGTTTTTTAATT
6853336 TCTGTTTTTT
Statistics
Matches: 148, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
84 3 0.02
85 40 0.27
87 29 0.20
88 2 0.01
89 31 0.21
91 41 0.28
93 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (88 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
AATTTCTGTTTTTTAATTCTAGC
Found at i:6853338 original size:13 final size:13
Alignment explanation
Indices: 6853322--6853355 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
6853312 TCTTTTCAAA
6853322 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
6853335 TTCTGTTTTTTTAAT
1 TTCTG--TTTTTAAT
6853350 TTCTGT
1 TTCTGT
6853356 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:6853347 original size:15 final size:15
Alignment explanation
Indices: 6853327--6853355 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6853317 TCAAATTCTG
6853327 TTTTTAATTTCTGTT
1 TTTTTAATTTCTGTT
6853342 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
6853356 GTTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTAATTTCTGTT
Found at i:6853517 original size:54 final size:54
Alignment explanation
Indices: 6853433--6853652 Score: 297
Period size: 54 Copynumber: 4.1 Consensus size: 54
6853423 TCAATTTCTA
*
6853433 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTT-AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
6853488 CTTTTAATTTCTATTTGTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
6853542 C--TT--TTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTAATTTCTATTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
6853595 CTTTTGTAAATTCT-GTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 C-TTT-TAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
6853650 CTT
1 CTT
6853653 GGCTCACGTC
Statistics
Matches: 148, Mismatches: 8, Indels: 19
0.85 0.05 0.11
Matches are distributed among these distances:
50 11 0.07
52 2 0.01
53 35 0.24
54 49 0.33
55 40 0.27
56 1 0.01
57 1 0.01
58 5 0.03
59 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (54 bp):
CTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:6853913 original size:14 final size:15
Alignment explanation
Indices: 6853894--6853928 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
6853884 TTTAATTTTC
6853894 AAAATTTCAAAAA-A
1 AAAATTTCAAAAATA
*
6853908 AAAATTTTAAAAATA
1 AAAATTTCAAAAATA
6853923 AAAATT
1 AAAATT
6853929 ACATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAATTTCAAAAATA
Found at i:6853958 original size:30 final size:30
Alignment explanation
Indices: 6853924--6854039 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 30
6853914 TTAAAAATAA
*
6853924 AAATTACATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCACT
** **
6853954 AAATTTCATTTTGACCATTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCACT
* * *
6853984 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCACT
* *
6854014 AAATTTCATTTT-AACCCTAAATTTTC
1 AAATTTCATTTTGACCCCTAAACTTTC
6854040 TAAAAATTAC
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
29 16 0.22
30 56 0.78
ACGTcount: A:0.32, C:0.22, G:0.03, T:0.43
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCACT
Found at i:6854046 original size:29 final size:29
Alignment explanation
Indices: 6853921--6854053 Score: 85
Period size: 30 Copynumber: 4.5 Consensus size: 29
6853911 ATTTTAAAAA
* *
6853921 TAAAAATTACATTTTGACCCCTAAACTTTTCC
1 TAAAAATTTCATTTT-AACCCTAAAC-TTT-C
* *
6853953 T--AAATTTCATTTTGACCATTAAACTTTC
1 TAAAAATTTCATTTTAACC-CTAAACTTTC
** *
6853981 TTTAAATTTCA-CTTAGACCCCTAAACTTTC
1 TAAAAATTTCATTTTA-A-CCCTAAACTTTC
* *
6854011 -ATTAAATTTCATTTTAACCCTAAATTTTC
1 TA-AAAATTTCATTTTAACCCTAAACTTTC
*
6854040 TAAAAATTACATTT
1 TAAAAATTTCATTT
6854054 AGCCCCAGAA
Statistics
Matches: 81, Mismatches: 12, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
28 2 0.02
29 28 0.35
30 45 0.56
31 5 0.06
32 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.43
Consensus pattern (29 bp):
TAAAAATTTCATTTTAACCCTAAACTTTC
Found at i:6854609 original size:24 final size:24
Alignment explanation
Indices: 6854582--6854636 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
6854572 AGCAAAAAAA
6854582 AAGCAGCAAAAAAGAAGAAGAAAG
1 AAGCAGCAAAAAAGAAGAAGAAAG
*
6854606 AAGCAGAAAAAAAGAAGAAGAAAG
1 AAGCAGCAAAAAAGAAGAAGAAAG
6854630 AAGCAGC
1 AAGCAGC
6854637 CCACTTTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.65, C:0.09, G:0.25, T:0.00
Consensus pattern (24 bp):
AAGCAGCAAAAAAGAAGAAGAAAG
Found at i:6855263 original size:17 final size:17
Alignment explanation
Indices: 6855220--6855267 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
6855210 AGAAAAAAAT
6855220 CGTGTTTCAAAAATTTTCA
1 CGTGTTTC-AAAA-TTTCA
6855239 --TGTCTTCAAAATTTCA
1 CGTGT-TTCAAAATTTCA
6855255 CGTGTTTCAAAAT
1 CGTGTTTCAAAAT
6855268 AATAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.19
17 15 0.58
18 6 0.23
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (17 bp):
CGTGTTTCAAAATTTCA
Found at i:6855351 original size:17 final size:16
Alignment explanation
Indices: 6855331--6855442 Score: 71
Period size: 17 Copynumber: 6.4 Consensus size: 16
6855321 AAAAAAAATC
6855331 CGTGTTTCAAAAATTCT
1 CGTGTTTCAAAAATT-T
** *
6855348 CGTGAATAAAAAATTT
1 CGTGTTTCAAAAATTT
*
6855364 CGTGTTTTCAAAAATTCC
1 CGTG-TTTCAAAAATT-T
*
6855382 CGTGTTTTAAAAAAAAATTT
1 CGTG-TTT---CAAAAATTT
6855402 CGTGTTTCAAAAATTTT
1 CGTGTTTCAAAAA-TTT
* *
6855419 CGTATTTTCAAAATTTT
1 CGT-GTTTCAAAAATTT
*
6855436 CATGTTT
1 CGTGTTT
6855443 TCGTGTTTTC
Statistics
Matches: 74, Mismatches: 14, Indels: 15
0.72 0.14 0.15
Matches are distributed among these distances:
16 13 0.18
17 31 0.42
18 16 0.22
19 3 0.04
20 4 0.05
21 7 0.09
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (16 bp):
CGTGTTTCAAAAATTT
Found at i:6855399 original size:21 final size:20
Alignment explanation
Indices: 6855373--6855414 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
6855363 TCGTGTTTTC
*
6855373 AAAAATTCCCGTGTTTTAAAA
1 AAAAATT-CCGTGTTTCAAAA
*
6855394 AAAAATTTCGTGTTTCAAAA
1 AAAAATTCCGTGTTTCAAAA
6855414 A
1 A
6855415 TTTTCGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (20 bp):
AAAAATTCCGTGTTTCAAAA
Found at i:6855498 original size:19 final size:19
Alignment explanation
Indices: 6855471--6855512 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
6855461 CTCGTGTTTT
*
6855471 TTTTTAAAAAAAATTCATG
1 TTTTAAAAAAAAATTCATG
6855490 TTTTAAAAAAAAATTCATG
1 TTTTAAAAAAAAATTCATG
6855509 TTTT
1 TTTT
6855513 CGAAATTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
TTTTAAAAAAAAATTCATG
Found at i:6855590 original size:20 final size:20
Alignment explanation
Indices: 6855565--6855642 Score: 94
Period size: 19 Copynumber: 4.1 Consensus size: 20
6855555 TCACGTATCG
*
6855565 AAAATTTCCTTGTTTTCAAA
1 AAAATTTCCGTGTTTTCAAA
6855585 AAAA-TTCCGTGTTTTCAAA
1 AAAATTTCCGTGTTTTCAAA
*
6855604 AAAATTTTCGTG-TTTC--A
1 AAAATTTCCGTGTTTTCAAA
6855621 AAAATCTT-CGTGTTTTCAAA
1 AAAAT-TTCCGTGTTTTCAAA
6855641 AA
1 AA
6855643 TTATTATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
17 10 0.20
18 6 0.12
19 22 0.43
20 13 0.25
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (20 bp):
AAAATTTCCGTGTTTTCAAA
Found at i:6855620 original size:38 final size:38
Alignment explanation
Indices: 6855574--6855660 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 38
6855564 GAAAATTTCC
6855574 TTGT-TTTCAAAAAAATTCCGTGTTTTCAAAAA-AATT-
1 TTGTGTTTCAAAAAAATT-CGTGTTTTCAAAAATAATTA
** *
6855610 TTCGTGTTTCAAAAATCTTCGTGTTTTCAAAAATTATTA
1 TT-GTGTTTCAAAAAAATTCGTGTTTTCAAAAATAATTA
6855649 TTGTGTTTCAAA
1 TTGTGTTTCAAA
6855661 GTTCTCGTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
36 2 0.05
37 16 0.36
38 24 0.55
39 2 0.05
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.45
Consensus pattern (38 bp):
TTGTGTTTCAAAAAAATTCGTGTTTTCAAAAATAATTA
Found at i:6855643 original size:18 final size:18
Alignment explanation
Indices: 6855575--6855643 Score: 77
Period size: 17 Copynumber: 3.7 Consensus size: 18
6855565 AAAATTTCCT
*
6855575 TGTTTTCAAAAAAATTCCG
1 TGTTTTCAAAAATATT-CG
*
6855594 TGTTTTCAAAAAAATTTTCG
1 TGTTTTC--AAAAATATTCG
*
6855614 TG-TTTCAAAAATCTTCG
1 TGTTTTCAAAAATATTCG
6855631 TGTTTTCAAAAAT
1 TGTTTTCAAAAAT
6855644 TATTATTGTG
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
17 12 0.27
18 10 0.23
19 11 0.25
20 4 0.09
21 7 0.16
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (18 bp):
TGTTTTCAAAAATATTCG
Found at i:6858584 original size:172 final size:172
Alignment explanation
Indices: 6858287--6858631 Score: 647
Period size: 172 Copynumber: 2.0 Consensus size: 172
6858277 CAGAAGCCTT
6858287 AATCATATCCTGGCATGACACTGATGGTCTTGGTATATTCAGATTTTCTTTTATATCTAATTCAT
1 AATCATATCCTGGCATGACACTGATGGTCTTGGTATATTCAGATTTTCTTTTATATCTAATTCAT
* *
6858352 GAAGGTGCAGTTATCTTTTTAAATTTTTTTTATATAAAATTAGGGTACGGGATGGAGTCACTCAG
66 GAAGGTGCAGTTATCTTTTTAAATTTTTTTTATATAAAATTAGGGTACGGGATAGAGTCACTCAA
6858417 TTTGAACCCATGTTAGACAAATGTCTAACAAAAGTTTTGATC
131 TTTGAACCCATGTTAGACAAATGTCTAACAAAAGTTTTGATC
*
6858459 AATCATATCTTGGCATGACACTGATGGTCTTGGTATATTCAGATTTTCTTTTATATCTAATTCAT
1 AATCATATCCTGGCATGACACTGATGGTCTTGGTATATTCAGATTTTCTTTTATATCTAATTCAT
6858524 GAAGGTGCAGTTATCTTTTTAAATTTTTTTTATATAAAATTAGGGTGA-GGGATAGAGTCACTCA
66 GAAGGTGCAGTTATCTTTTTAAATTTTTTTTATATAAAATTAGGGT-ACGGGATAGAGTCACTCA
6858588 ATTTGAACCCATGTTAGACAAATGTCTAACAAAAGTTTTGATC
130 ATTTGAACCCATGTTAGACAAATGTCTAACAAAAGTTTTGATC
6858631 A
1 A
6858632 CCGCTCTGTA
Statistics
Matches: 169, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
172 168 0.99
173 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (172 bp):
AATCATATCCTGGCATGACACTGATGGTCTTGGTATATTCAGATTTTCTTTTATATCTAATTCAT
GAAGGTGCAGTTATCTTTTTAAATTTTTTTTATATAAAATTAGGGTACGGGATAGAGTCACTCAA
TTTGAACCCATGTTAGACAAATGTCTAACAAAAGTTTTGATC
Found at i:6862091 original size:20 final size:20
Alignment explanation
Indices: 6862041--6862083 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
6862031 TGGACACATT
* *
6862041 AAAAAATTAATT-TTTTTAA
1 AAAAAATAAATTAATTTTAA
6862060 AAAAAATAAATTAATTTTAA
1 AAAAAATAAATTAATTTTAA
6862080 AAAA
1 AAAA
6862084 GTATAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAAATAAATTAATTTTAA
Found at i:6863838 original size:23 final size:23
Alignment explanation
Indices: 6863811--6863854 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
6863801 TGATATTGCG
* *
6863811 AAAATTTAATTATAATTTTATAA
1 AAAATTAAAATATAATTTTATAA
6863834 AAAATTAAAATATAATTTTAT
1 AAAATTAAAATATAATTTTAT
6863855 CATTTATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATTAAAATATAATTTTATAA
Found at i:6867240 original size:22 final size:22
Alignment explanation
Indices: 6867215--6867256 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
6867205 ATATAATAGC
*
6867215 AAAATGACAGTAAAACAACAGT
1 AAAATGACAGCAAAACAACAGT
*
6867237 AAAATGGCAGCAAAACAACA
1 AAAATGACAGCAAAACAACA
6867257 ACAAGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.17, G:0.14, T:0.10
Consensus pattern (22 bp):
AAAATGACAGCAAAACAACAGT
Found at i:6872736 original size:20 final size:21
Alignment explanation
Indices: 6872700--6872740 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
6872690 AATTTTAAAA
6872700 TATTTTTAAAATAAATTTTTT
1 TATTTTTAAAATAAATTTTTT
6872721 TATTTTTAAAAT-AATTTTTT
1 TATTTTTAAAATAAATTTTTT
6872741 GGTGTTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTT
Found at i:6872748 original size:20 final size:21
Alignment explanation
Indices: 6872704--6872748 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
6872694 TTAAAATATT
* *
6872704 TTTAAAATAAATTTTTTTATT
1 TTTAAAATAAATTTTTTGATG
*
6872725 TTTAAAAT-AATTTTTTGGTG
1 TTTAAAATAAATTTTTTGATG
6872745 TTTA
1 TTTA
6872749 TTAAAAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTAAAATAAATTTTTTGATG
Found at i:6873565 original size:12 final size:12
Alignment explanation
Indices: 6873545--6873577 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6873535 TTGTTTCAGG
6873545 TTGTATTATTAA
1 TTGTATTATTAA
*
6873557 TTGTGTTATTAA
1 TTGTATTATTAA
6873569 TT-TATTATT
1 TTGTATTATT
6873578 TTAAATTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (12 bp):
TTGTATTATTAA
Found at i:6873886 original size:43 final size:43
Alignment explanation
Indices: 6873799--6874036 Score: 256
Period size: 43 Copynumber: 5.7 Consensus size: 43
6873789 TTTTTGCTAG
* * * * * *
6873799 AAGCGCCGCTAAAGGT-TTGTTCTTTAGCGGCATTTATAATAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGACAA
* ** * *
6873841 AAGCGACGCTAAAGGTCATGACCTTTAGTGGCATTTGTGACAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGACAA
* *
6873884 AAGCGCCGCTAAAGTTTATGGTCTTTCAGCGGCGTTTGTGACAA
1 AAGCGCCGCTAAAGGTCATGGTCTTT-AGCGGCGTTTGTGACAA
* * *
6873928 AAGCGCAGCTAAAGCTCATGGTCTTTAGCGGCGTTTGTGACAG
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGACAA
*
6873971 ACGCGCCGCT-AA----A-GGTCTTTAGCGGCGTTTGTGACAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGACAA
*
6874008 ATGCGCCGCTAAAGGTCATGGTCTTTAGC
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGC
6874037 ATCGTTTTTC
Statistics
Matches: 165, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
37 32 0.19
38 3 0.02
42 18 0.11
43 74 0.45
44 38 0.23
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGACAA
Found at i:6873947 original size:87 final size:85
Alignment explanation
Indices: 6873799--6874036 Score: 247
Period size: 87 Copynumber: 2.8 Consensus size: 85
6873789 TTTTTGCTAG
* * * * *
6873799 AAGCGCCGCTAAAGGTT-TGTTCTTTAGCGGCATTTATAATAAAAGCG-ACGCTAAAGGTCATGA
1 AAGCGCCGCTAAA-GTTATGGTCTTTAGCGGCGTTTGTGACAAAAGCGCA-GCTAAAGGTCATGA
*
6873862 CCTTTAGTGGCATTTGTGACAA
64 CCTTTAGCGGCATTTGTGACAA
* *
6873884 AAGCGCCGCTAAAGTTTATGGTCTTTCAGCGGCGTTTGTGACAAAAGCGCAGCTAAAGCTCATGG
1 AAGCGCCGCTAAAG-TTATGGTCTTT-AGCGGCGTTTGTGACAAAAGCGCAGCTAAAGGTCATGA
* * *
6873949 TCTTTAGCGGCGTTTGTGACAG
64 CCTTTAGCGGCATTTGTGACAA
* * * **
6873971 ACGCGCCGCT-AA---A-GGTCTTTAGCGGCGTTTGTGACAAATGCGCCGCTAAAGGTCATGGTC
1 AAGCGCCGCTAAAGTTATGGTCTTTAGCGGCGTTTGTGACAAAAGCGCAGCTAAAGGTCATGACC
6874031 TTTAGC
66 TTTAGC
6874037 ATCGTTTTTC
Statistics
Matches: 134, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
80 43 0.32
81 7 0.05
82 1 0.01
84 1 0.01
85 15 0.11
86 9 0.07
87 57 0.43
88 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (85 bp):
AAGCGCCGCTAAAGTTATGGTCTTTAGCGGCGTTTGTGACAAAAGCGCAGCTAAAGGTCATGACC
TTTAGCGGCATTTGTGACAA
Found at i:6873997 original size:37 final size:37
Alignment explanation
Indices: 6873903--6874024 Score: 145
Period size: 37 Copynumber: 3.1 Consensus size: 37
6873893 TAAAGTTTAT
* *
6873903 GGTCTTTCAGCGGCGTTTGTGACAAAAGCGCAGCTAAAGCTCA
1 GGTCTTT-AGCGGCGTTTGTGACAAACGCGCCGCT-AA----A
*
6873946 TGGTCTTTAGCGGCGTTTGTGACAGACGCGCCGCTAAA
1 -GGTCTTTAGCGGCGTTTGTGACAAACGCGCCGCTAAA
*
6873984 GGTCTTTAGCGGCGTTTGTGACAAATGCGCCGCTAAA
1 GGTCTTTAGCGGCGTTTGTGACAAACGCGCCGCTAAA
6874021 GGTC
1 GGTC
6874025 ATGGTCTTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
37 39 0.53
38 1 0.01
42 2 0.03
43 24 0.33
44 7 0.10
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.25
Consensus pattern (37 bp):
GGTCTTTAGCGGCGTTTGTGACAAACGCGCCGCTAAA
Found at i:6875667 original size:24 final size:24
Alignment explanation
Indices: 6875640--6875685 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
6875630 ATTGAAATGA
6875640 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
6875664 ATTGAATTTATATTGATTGAAT
1 ATTGAATTTATATTGATTGAAT
6875686 AGGTATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.15
24 12 0.60
25 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:6875708 original size:11 final size:11
Alignment explanation
Indices: 6875692--6875735 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 11
6875682 GAATAGGTAT
6875692 ATATATATTGA
1 ATATATATTGA
6875703 ATATATATTG-
1 ATATATATTGA
6875713 AT-TAT-TTGA
1 ATATATATTGA
*
6875722 ATTTA-ATTGA
1 ATATATATTGA
6875732 ATAT
1 ATAT
6875736 TGGTTGTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
8 3 0.10
9 5 0.17
10 11 0.38
11 10 0.34
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (11 bp):
ATATATATTGA
Found at i:6875730 original size:18 final size:19
Alignment explanation
Indices: 6875694--6875736 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
6875684 ATAGGTATAT
6875694 ATATATTGAATATATATTGA
1 ATAT-TTGAATATATATTGA
* *
6875714 TTATTTGAATTTA-ATTGA
1 ATATTTGAATATATATTGA
6875732 ATATT
1 ATATT
6875737 GGTTGTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 9 0.45
19 8 0.40
20 3 0.15
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (19 bp):
ATATTTGAATATATATTGA
Found at i:6875893 original size:41 final size:40
Alignment explanation
Indices: 6875847--6875957 Score: 104
Period size: 37 Copynumber: 2.8 Consensus size: 40
6875837 GACTTCGAGT
**
6875847 CGATGAGACACTAGGTGTCAAATTATTACTTCGGATATATT
1 CGATGAGACACTAGGTGTCAAATTATTACTTCGG-TATAGC
* * * * *
6875888 TGATGAGGCACTGGGTG-CCAA-T-TTACTTCGGTTTAGC
1 CGATGAGACACTAGGTGTCAAATTATTACTTCGGTATAGC
*
6875925 CGATGAGACA-TTGAGTGTCAAATTATTACTTCG
1 CGATGAGACACTAG-GTGTCAAATTATTACTTCG
6875958 AATTATTCAC
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
36 2 0.04
37 14 0.25
38 12 0.22
39 2 0.04
40 11 0.20
41 14 0.25
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (40 bp):
CGATGAGACACTAGGTGTCAAATTATTACTTCGGTATAGC
Found at i:6876986 original size:14 final size:14
Alignment explanation
Indices: 6876967--6877005 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
6876957 TTGTTTCACT
*
6876967 GAAAATGGCTTCCG
1 GAAAATGACTTCCG
* *
6876981 GAAAATGATTTCTG
1 GAAAATGACTTCCG
6876995 GAAAATGACTT
1 GAAAATGACTT
6877006 ACTTTTCTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (14 bp):
GAAAATGACTTCCG
Found at i:6877438 original size:18 final size:18
Alignment explanation
Indices: 6877400--6877435 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6877390 TTATTATTTT
*
6877400 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
6877418 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
6877436 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:6877449 original size:13 final size:13
Alignment explanation
Indices: 6877429--6877483 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
6877419 AAAATTTAAA
6877429 TATT-AAATAATT
1 TATTAAAATAATT
*
6877441 TATTAAAATAATA
1 TATTAAAATAATT
* *
6877454 TATTATATTAATT
1 TATTAAAATAATT
6877467 ATATT--AATAATT
1 -TATTAAAATAATT
6877479 TATTA
1 TATTA
6877484 TATGACTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
11 4 0.11
12 10 0.29
13 17 0.49
14 4 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
TATTAAAATAATT
Found at i:6877453 original size:16 final size:19
Alignment explanation
Indices: 6877424--6877483 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 19
6877414 AAAATAAAAT
6877424 TTAA-ATATTAAATAATTTA
1 TTAATATATT-AATAATTTA
6877443 TTAA-A-A-TAATATATTATA
1 TTAATATATTAATA-ATT-TA
6877461 TTAATTATATTAATAATTTA
1 TTAA-TATATTAATAATTTA
6877481 TTA
1 TTA
6877484 TATGACTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
16 4 0.11
17 4 0.11
18 7 0.20
19 5 0.14
20 6 0.17
21 4 0.11
22 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAATATATTAATAATTTA
Found at i:6885129 original size:8 final size:8
Alignment explanation
Indices: 6885101--6885135 Score: 52
Period size: 8 Copynumber: 4.1 Consensus size: 8
6885091 AGCCAGCCAC
6885101 AAGGAAAA
1 AAGGAAAA
6885109 AAGAGAGAAA
1 AAG-GA-AAA
6885119 AAGGAAAA
1 AAGGAAAA
6885127 AAGGAAAA
1 AAGGAAAA
6885135 A
1 A
6885136 GAAAAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 15 0.60
9 4 0.16
10 6 0.24
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (8 bp):
AAGGAAAA
Found at i:6887193 original size:16 final size:18
Alignment explanation
Indices: 6887172--6887207 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
6887162 AAAAATCTTA
6887172 TTTTATTTT-ATT-TATT
1 TTTTATTTTAATTATATT
6887188 TTTTATTTTAATTATATT
1 TTTTATTTTAATTATATT
6887206 TT
1 TT
6887208 GAAGTGGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 3 0.17
18 6 0.33
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATTTTAATTATATT
Found at i:6905252 original size:16 final size:16
Alignment explanation
Indices: 6905227--6905260 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6905217 TATGTTTTGC
* *
6905227 TTTGATTGCATGGCAT
1 TTTGACTGCATAGCAT
6905243 TTTGACTGCATAGCAT
1 TTTGACTGCATAGCAT
6905259 TT
1 TT
6905261 CATCCTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (16 bp):
TTTGACTGCATAGCAT
Found at i:6905670 original size:21 final size:21
Alignment explanation
Indices: 6905645--6905688 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
6905635 GATCTGGTAC
6905645 CTACAGTGGAGGAATATATGG
1 CTACAGTGGAGGAATATATGG
6905666 CTACAGTGGAGGAATATATGG
1 CTACAGTGGAGGAATATATGG
6905687 CT
1 CT
6905689 TTACTTCGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.25
Consensus pattern (21 bp):
CTACAGTGGAGGAATATATGG
Found at i:6911718 original size:132 final size:132
Alignment explanation
Indices: 6911478--6912171 Score: 845
Period size: 132 Copynumber: 5.3 Consensus size: 132
6911468 GAATAGACCA
* *
6911478 TTGAAGATTGCAGATCTTGTCTCCCTAATCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* *
6911543 TTCCCAAAATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCTTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
6911608 GG
131 GG
* * * * **
6911610 TTAAAGATTGCAGATCCTGTCTCCATAAGCAGTAGCGGAGCAGATCGAAAATGATGAATCTTATC
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * *
6911675 TTCCCAAGATAGTGGAGAAGTAGATTTATGCCATTAGTTCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
6911740 GG
131 GG
* *
6911742 TTGAAGATTACAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATT
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * * * *
6911807 TTCCCAATATAGTGGAGAAACAGATTTAAGCCATTGGTCCTATCTCCTTGAGCAGTAGTAGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
6911872 GG
131 GG
* * * * * * *
6911874 TTGAAGAATGTAAATACTGTCTCCCTAAGCAGTAGTGGAGCACATC----A-TG-G-ATCTTATC
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * ** * *
6911932 TTCCCAAGGTAGTAGG-GAAGCAAATTTAAGCC---CCTCCTATTTCCCTGAACAGCAGTGGAGT
66 TTCCCAAGATAGT-GGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGT
6911993 AGG
130 AGG
* * * * *
6911996 TTGAAGATTGTAGATCCTGTCTCCCTAAGTAGTAGAGGAGCA-AGTCGAGGACGGCAAATCTTAT
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGA-TCGAAGACGGCGAATCTTAT
* * * ***
6912060 CTTCCTAAGATAGTAGTGAAGCAGATTTAAGCCACCGGTCCTATCTCCCTGAGCAGCAGTGGAGT
65 CTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGT
6912125 AGG
130 AGG
* * * *
6912128 TTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGA
6912172 CACTACACCA
Statistics
Matches: 479, Mismatches: 69, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
121 1 0.00
122 64 0.13
125 32 0.07
126 4 0.01
127 2 0.00
128 2 0.00
129 34 0.07
132 339 0.71
133 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (132 bp):
TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
GG
Found at i:6912089 original size:254 final size:258
Alignment explanation
Indices: 6911478--6912169 Score: 921
Period size: 254 Copynumber: 2.7 Consensus size: 258
6911468 GAATAGACCA
*
6911478 TTGAAGATTGCAGATCTTGTCTCCCTAA-TCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTAT
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGT-AGTAGCGGAGCAGATCGAAGACGGCGAATCTTAT
*
6911542 CTTCCCAAAATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCTTGAGCAGCAGTGGAGT
65 CTTCCCAAAATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCTTGAGCAGCAGTGGAGT
* * * * * * *
6911607 AGGTTAAAGATTGCAGATCCTGTCTCCATAAGCAGTAGCGGAGCAGATCGAAAATGATGAATCTT
130 AGGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCACATC---AATGA-GAATCTT
* * * * * *
6911672 ATCTTCCCAAGATAGTGGAGAAGTAGATTTATGCCATTAGTTCTATCTCCCTGAGCAGCAGTGGA
191 ATCTTCCCAAGATAGTGGAGAAGCAAATTTAAGCC--TACTCCTATCTCCCTGAACAGCAGTGGA
6911737 GTAGG
254 GTAGG
* * *
6911742 TTGAAGATTACAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATT
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * *
6911807 TTCCCAATATAGTGGAGAAACAGATTTAAGCCATTGGTCCTATCTCCTTGAGCAGTAGTAGAGTA
66 TTCCCAAAATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCTTGAGCAGCAGTGGAGTA
*
6911872 GGTTGAAGAATGTAAATACTGTCTCCCTAAGCAGTAGTGGAGCACATC-ATG-G-ATCTTATCTT
131 GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCACATCAATGAGAATCTTATCTT
* * *
6911934 CCCAAGGTAGTAGG-GAAGCAAATTTAAGCC-CCTCCTATTTCCCTGAACAGCAGTGGAGTAGG
196 CCCAAGATAGT-GGAGAAGCAAATTTAAGCCTACTCCTATCTCCCTGAACAGCAGTGGAGTAGG
* * * *
6911996 TTGAAGATTGTAGATCCTGTCTCCCTAAGTAGTAGAGGAGCA-AGTCGAGGACGGCAAATCTTAT
1 TTGAAGATTGCAGATCCTGTCTCCCTAAGTAGTAGCGGAGCAGA-TCGAAGACGGCGAATCTTAT
* * * * ** *
6912060 CTTCCTAAGATAGTAGTGAAGCAGATTTAAGCCACCGGTCCTATCTCCCTGAGCAGCAGTGGAGT
65 CTTCCCAAAATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCTTGAGCAGCAGTGGAGT
6912125 AGGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCA
130 AGGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCA
6912170 GACACTACAC
Statistics
Matches: 381, Mismatches: 44, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
253 1 0.00
254 181 0.48
257 33 0.09
258 3 0.01
260 3 0.01
264 160 0.42
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (258 bp):
TTGAAGATTGCAGATCCTGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
TTCCCAAAATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCTTGAGCAGCAGTGGAGTA
GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCACATCAATGAGAATCTTATCTT
CCCAAGATAGTGGAGAAGCAAATTTAAGCCTACTCCTATCTCCCTGAACAGCAGTGGAGTAGG
Found at i:6912370 original size:43 final size:43
Alignment explanation
Indices: 6912322--6912505 Score: 199
Period size: 43 Copynumber: 4.3 Consensus size: 43
6912312 TTTTAGAAAT
* * *
6912322 AAACGCCGCTATAGATCAGGATCTTTAGCGGCGCTTTTCTAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTAAC
* *** * *
6912365 AAACGCCGCTATAGCTTGGGATCTTTAGCGGCGCTTTTCTAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTAAC
* * *
6912408 AAACGCCACTATAGCTCAAGACCTTTAGCGACGCTTTTAC-CAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTT-CTAAC
* ** *
6912451 AAACGCCACTATAGATCAAAGACCTTTAGCGACGCTTTGATTAC
1 AAACGCCGCTATAGATC-AAGACCTTTAGCGACGCTTTTCTAAC
6912495 AAACGCCGCTA
1 AAACGCCGCTA
6912506 AAAACACCAT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
43 90 0.73
44 33 0.27
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTAAC
Found at i:6912598 original size:16 final size:16
Alignment explanation
Indices: 6912577--6912610 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6912567 AAATATTAAA
*
6912577 TATTAAAATAAAACAT
1 TATTAAAATAAAAAAT
*
6912593 TATTAATATAAAAAAT
1 TATTAAAATAAAAAAT
6912609 TA
1 TA
6912611 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:6912864 original size:15 final size:15
Alignment explanation
Indices: 6912844--6912873 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6912834 TGGATCATCT
6912844 TCATCTTCATCTTCA
1 TCATCTTCATCTTCA
*
6912859 TCATCTTCTTCTTCA
1 TCATCTTCATCTTCA
6912874 CTTTCAACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (15 bp):
TCATCTTCATCTTCA
Found at i:6914057 original size:14 final size:14
Alignment explanation
Indices: 6914038--6914067 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6914028 CAGATTAGGT
6914038 GTGGGAAAAGGTTA
1 GTGGGAAAAGGTTA
6914052 GTGGGAAAAGGTTA
1 GTGGGAAAAGGTTA
6914066 GT
1 GT
6914068 TGCTTTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.43, T:0.23
Consensus pattern (14 bp):
GTGGGAAAAGGTTA
Found at i:6917237 original size:47 final size:46
Alignment explanation
Indices: 6917183--6917283 Score: 157
Period size: 47 Copynumber: 2.2 Consensus size: 46
6917173 ATACATAGGT
* * *
6917183 TTTTTTAAGTTATATTTATAAAAATTAGATAAATTTAAAAATTTTAG
1 TTTTTTAAGTAATATTTATAAAAATTAGATAAAATT-AAAAGTTTAG
6917230 TTTTTTAAGTAATATTTATAAAAATTAGATAAAATTAAAAGTTTAG
1 TTTTTTAAGTAATATTTATAAAAATTAGATAAAATTAAAAGTTTAG
6917276 TGTTTTTA
1 T-TTTTTA
6917284 TTTCATTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
46 10 0.20
47 40 0.80
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.49
Consensus pattern (46 bp):
TTTTTTAAGTAATATTTATAAAAATTAGATAAAATTAAAAGTTTAG
Found at i:6917803 original size:14 final size:15
Alignment explanation
Indices: 6917780--6917817 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
6917770 GTCCCTTAAT
6917780 TAAA-CCATAATACC
1 TAAATCCATAATACC
*
6917794 T-AATCCATAATCCC
1 TAAATCCATAATACC
6917808 TAAATCCATA
1 TAAATCCATA
6917818 TATATAGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATACC
Found at i:6918077 original size:22 final size:21
Alignment explanation
Indices: 6918052--6918094 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
6918042 TAGCTAACAT
6918052 CTAACTCCTAAACCCCTAACCC
1 CTAACTCCTAAACCCC-AACCC
* * *
6918074 CTAAGTCTTAAATCCCAACCC
1 CTAACTCCTAAACCCCAACCC
6918095 TTAATTAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.33, C:0.44, G:0.02, T:0.21
Consensus pattern (21 bp):
CTAACTCCTAAACCCCAACCC
Found at i:6918124 original size:17 final size:17
Alignment explanation
Indices: 6918098--6918141 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
6918088 CCAACCCTTA
*
6918098 ATTAAACCATAATCCCT
1 ATTAATCCATAATCCCT
6918115 ATTAATCCATAATCCCT
1 ATTAATCCATAATCCCT
6918132 A--AATCCATAA
1 ATTAATCCATAA
6918142 ATACTCCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 9 0.35
17 17 0.65
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30
Consensus pattern (17 bp):
ATTAATCCATAATCCCT
Found at i:6918162 original size:323 final size:312
Alignment explanation
Indices: 6917609--6918192 Score: 712
Period size: 323 Copynumber: 1.8 Consensus size: 312
6917599 TAAATTATAC
* * *
6917609 ATCTTTTACAATTACATAATAACATATTTAAAATATAAATAAAAATCTAAACCCAAAACCCTAAC
1 ATCTTTTACAACTACATAATAACATATTTAAAATATAAATAAAAACCAAAACCCAAAACCCTAAC
* * *
6917674 CCGACCCCTAAAACTCTAAACCCTAAATCCCTAACTCTTAACCACTAACGTCTAACCCCTAAACT
66 CCGACCCATAAAACTCTAAACCCTAAATCCCTAACTCTTAACCACTAACATCTAACCCCTAAACC
*
6917739 CTTAACCCCTAAACCTTAAATCTCGACCAACGTCCCTTAATTAAACCATAATACCTAATCCATAA
131 CCTAACCCCTAAACCTTAAA-CTC-ACCAAC--CCCTTAATTAAACCATAATACCTAATCCATAA
* * ** * *
6917804 TCCCTAAATCCATATATATAGTAGTCCCTAAACCTTTAAATATGAACCCCTAAACCGGCCTTAAA
192 TCCCTAAATCCATATATATACTACTAACTAAACCTTAAAATATGAACCCCTAAACCGACCTTAAA
6917869 TATTAAATTTATCATATACTCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
257 TATTAAATTTATCATATACTCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
*
6917925 ATCTTTTACAACTACATAATAACATATTTTAAATATAATAATAATCTAAACCCAAAACCCAAAAC
1 ATCTTTTACAACTACATAATAACATATTTAAAATAT-A-AATAA---AAA-CCAAAACCCAAAAC
* * *
6917990 CCTAACCTGACCCATGAAAC-CTTAAGCCCCTAAATCCCTAACTCTTAACCCTTAGCTAACATCT
60 CCTAACCCGACCCATAAAACTC-TAA-ACCCTAAATCCCTAACTCTTAA-CC--A-CTAACATCT
* ** *
6918054 AACTCCTAAACCCCTAACCCCTAAGTCTTAAA-TC-CCAA-CCCTTAATTAAACCATAATCCCTA
119 AACCCCTAAACCCCTAACCCCTAAACCTTAAACTCACCAACCCCTTAATTAAACCATAATACC--
* * * *
6918116 TTAATCCATAATCCCTAAATCCATA-A-ATACTCCCTAACTAAAACCTTAAAATATGATCTCTTA
182 -TAATCCATAATCCCTAAATCCATATATATACT-ACTAACT-AAACCTTAAAATATGAACCCCTA
6918179 AACCGACCTTAAAT
244 AACCGACCTTAAAT
6918193 CGAGATCATG
Statistics
Matches: 226, Mismatches: 25, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
316 34 0.15
317 1 0.00
318 5 0.02
320 21 0.09
321 8 0.04
322 36 0.16
323 81 0.36
324 2 0.01
325 2 0.01
326 1 0.00
327 35 0.15
ACGTcount: A:0.41, C:0.28, G:0.03, T:0.28
Consensus pattern (312 bp):
ATCTTTTACAACTACATAATAACATATTTAAAATATAAATAAAAACCAAAACCCAAAACCCTAAC
CCGACCCATAAAACTCTAAACCCTAAATCCCTAACTCTTAACCACTAACATCTAACCCCTAAACC
CCTAACCCCTAAACCTTAAACTCACCAACCCCTTAATTAAACCATAATACCTAATCCATAATCCC
TAAATCCATATATATACTACTAACTAAACCTTAAAATATGAACCCCTAAACCGACCTTAAATATT
AAATTTATCATATACTCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
Found at i:6920095 original size:3 final size:3
Alignment explanation
Indices: 6920087--6920128 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
6920077 CTATTGCTAA
6920087 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6920129 ATTTTTATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Done.