Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 24 of 126
Found at i:6920136 original size:8 final size:8
Alignment explanation
Indices: 6920087--6920137 Score: 57
Period size: 9 Copynumber: 5.9 Consensus size: 8
6920077 CTATTGCTAA
6920087 TATTATTAT
1 TATTA-TAT
6920096 TATTATTAT
1 TATTA-TAT
6920105 TATTATTAT
1 TATTA-TAT
6920114 TATTATTAT
1 TATTA-TAT
6920123 TATTATAT
1 TATTATAT
*
6920131 TTTTATA
1 TATTATA
6920138 ACAATTTATC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
8 9 0.22
9 32 0.78
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TATTATAT
Found at i:6930839 original size:21 final size:22
Alignment explanation
Indices: 6930813--6930853 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
6930803 CCTCAGCTAC
6930813 CCAAACACAACCA-ACCCAAAT
1 CCAAACACAACCAGACCCAAAT
*
6930834 CCAAACAGAACCAGACCCAA
1 CCAAACACAACCAGACCCAA
6930854 CTAGCCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.51, C:0.41, G:0.05, T:0.02
Consensus pattern (22 bp):
CCAAACACAACCAGACCCAAAT
Found at i:6931951 original size:3 final size:3
Alignment explanation
Indices: 6931945--6931980 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
6931935 TTAATAATAA
* *
6931945 TAT TAT TAT TAT TGT TAT TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6931981 AATTGCCCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:6932015 original size:20 final size:20
Alignment explanation
Indices: 6931990--6932033 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6931980 TAATTGCCCT
* *
6931990 TATATATATACGTTTTTTTA
1 TATATATACACATTTTTTTA
*
6932010 TATATATACATATTTTTTTA
1 TATATATACACATTTTTTTA
6932030 TATA
1 TATA
6932034 CTTACACACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (20 bp):
TATATATACACATTTTTTTA
Found at i:6932039 original size:20 final size:20
Alignment explanation
Indices: 6931989--6932033 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
6931979 ATAATTGCCC
*
6931989 TTATATATATAC--GTTTTT
1 TTATATATATACATATTTTT
6932007 TTATATATATACATATTTTT
1 TTATATATATACATATTTTT
6932027 TTATATA
1 TTATATA
6932034 CTTACACACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 12 0.50
20 12 0.50
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (20 bp):
TTATATATATACATATTTTT
Found at i:6932443 original size:97 final size:97
Alignment explanation
Indices: 6932242--6932436 Score: 372
Period size: 97 Copynumber: 2.0 Consensus size: 97
6932232 ATACATATAT
*
6932242 ACATTATAATGTTATTCACTATTATTGTTTCATTTGGTGTTAATTTATTTATTTATTTACATGCT
1 ACATTATAATGTTATTCACTATTATCGTTTCATTTGGTGTTAATTTATTTATTTATTTACATGCT
6932307 CATTATTATTTTTATTTTATTTAGGTGCTTTA
66 CATTATTATTTTTATTTTATTTAGGTGCTTTA
*
6932339 ACATTATAATGTTATTCACTGTTATCGTTTCATTTGGTGTTAATTTATTTATTTATTTACATGCT
1 ACATTATAATGTTATTCACTATTATCGTTTCATTTGGTGTTAATTTATTTATTTATTTACATGCT
6932404 CATTATTATTTTTATTTTATTTAGGTGCTTTA
66 CATTATTATTTTTATTTTATTTAGGTGCTTTA
6932436 A
1 A
6932437 TTTTATATTT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 96 1.00
ACGTcount: A:0.25, C:0.09, G:0.10, T:0.57
Consensus pattern (97 bp):
ACATTATAATGTTATTCACTATTATCGTTTCATTTGGTGTTAATTTATTTATTTATTTACATGCT
CATTATTATTTTTATTTTATTTAGGTGCTTTA
Found at i:6932465 original size:18 final size:17
Alignment explanation
Indices: 6932442--6932477 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
6932432 TTTAATTTTA
*
6932442 TATTTGTTTATTTACTTT
1 TATTTGTTGATTT-CTTT
6932460 TATTTGTTGATTTCTTT
1 TATTTGTTGATTTCTTT
6932477 T
1 T
6932478 CATTATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.72
Consensus pattern (17 bp):
TATTTGTTGATTTCTTT
Found at i:6932783 original size:110 final size:111
Alignment explanation
Indices: 6932585--6932912 Score: 577
Period size: 110 Copynumber: 3.0 Consensus size: 111
6932575 TATCAAAAAC
*
6932585 AAAATTTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
6932650 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT-
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
6932695 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
6932760 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
* *
6932806 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCTTAAGGTGCT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
* * * * *
6932871 GGGGGTCGATTTTTCTCATTTAACCGAATAGCCAAATATCCT
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCT
6932913 CTTGAATTTC
Statistics
Matches: 209, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
110 109 0.52
111 100 0.48
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (111 bp):
AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
Found at i:6936383 original size:46 final size:46
Alignment explanation
Indices: 6936332--6936596 Score: 419
Period size: 46 Copynumber: 5.8 Consensus size: 46
6936322 AGTGATAAGT
* *
6936332 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGTTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTA
*
6936378 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTA
*
6936424 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTA
*
6936470 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTA
*
6936516 GCTACATTTATCTGATCAAGTGACAAAGTGATAAGTGGTAG-TCTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCT-TTA
* * *
6936562 GCTACAATTATCTGAT-TAGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
6936597 ATCATACGTA
Statistics
Matches: 206, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
44 12 0.06
45 5 0.02
46 189 0.92
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTA
Found at i:6939975 original size:43 final size:43
Alignment explanation
Indices: 6939914--6940001 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
6939904 TGGTCAACGG
6939914 AAAATGACTTACAGGTCAACGGAAAATAAGCCTTTTTCCTTGT
1 AAAATGACTTACAGGTCAACGGAAAATAAGCCTTTTTCCTTGT
*
6939957 AAAATGGCTTACAGGTCAACGGAAAATAAGCCTTTTTCCTTGT
1 AAAATGACTTACAGGTCAACGGAAAATAAGCCTTTTTCCTTGT
6940000 AA
1 AA
6940002 CCTTTTGAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (43 bp):
AAAATGACTTACAGGTCAACGGAAAATAAGCCTTTTTCCTTGT
Found at i:6944810 original size:48 final size:48
Alignment explanation
Indices: 6944731--6944824 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
6944721 AGGGAATTCT
* *
6944731 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
6944779 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
6944825 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:6949491 original size:15 final size:15
Alignment explanation
Indices: 6949471--6949500 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6949461 TTTGTCTTTG
*
6949471 ATTATTCATATTATT
1 ATTATTCATAATATT
6949486 ATTATTCATAATATT
1 ATTATTCATAATATT
6949501 TTCTATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTATTCATAATATT
Found at i:6961651 original size:335 final size:336
Alignment explanation
Indices: 6961034--6961703 Score: 1216
Period size: 335 Copynumber: 2.0 Consensus size: 336
6961024 GAGTCATATG
*
6961034 TTAAGGGATCAATCGAACCACAAAATCAATACTTAATAGACGAAACTCTCATTGGCGTTGTTCCG
1 TTAAGGGATCAATCGAACCACAAAATCAATACTTAATAGACGAAACTCTCATTGGCGTCGTTCCG
*
6961099 AAGATTTTACGCCTAATTCTTTTACAAAGTTCTATTAATTCTATGTTCTGGTTAAAAACCAGTCG
66 AAAATTTTACGCCTAATTCTTTTACAAAGTTCTATTAATTCTATGTTCTGGTTAAAAACCAGTCG
6961164 CGCTGTGTTCTTTGATATAAAAACAATACCGTTCTCGGTGTCATAGACCTCACCATCATAGTAAA
131 CGCTGTGTTCTTTGATATAAAAACAATACCGTTCTCGGTGTCATAGACCTCACCATCATAGTAAA
* * * *
6961229 TAAGAACACGAATGCGTTCACTTATTTTCAACCAAATTATTTGTCGAAAAAAATTCAAAACAAAA
196 TAAGAACACGAATACGTTCACTCATTTTCAACCAAATTATCTATCGAAAAAAATTCAAAACAAAA
6961294 AACATTATGCAAAAACATAATGTTTCGTATAAATATTAATACGATAAATCAACTTATAACTTCTC
261 AACATTATGCAAAAACATAATGTTTCGTATAAATATTAATACGATAAATCAACTTATAACTTCTC
6961359 AACTTCTTCAA
326 AACTTCTTCAA
*
6961370 TTAAGGGATCAATCGAACCACAAAATCAATACTTAATAGACGAAACTCTCATTTGCGTCGTTCCG
1 TTAAGGGATCAATCGAACCACAAAATCAATACTTAATAGACGAAACTCTCATTGGCGTCGTTCCG
6961435 AAAATTTTACGCCTAATTCTTTTACAAAGTTCTATTAATTCTATGTTCTGGTT-AAAACCAGTCG
66 AAAATTTTACGCCTAATTCTTTTACAAAGTTCTATTAATTCTATGTTCTGGTTAAAAACCAGTCG
* * *
6961499 CGCTGTGTTCTTTGATATAAAAATAATATCGTTCTTGGTGTCATAGACCTCACCATCATAGTAAA
131 CGCTGTGTTCTTTGATATAAAAACAATACCGTTCTCGGTGTCATAGACCTCACCATCATAGTAAA
* *
6961564 TAAGAACACTAATACGTTCACTCATTTTCAACCAAATTATCTATCGAAAGAAATTCAAAACAAAA
196 TAAGAACACGAATACGTTCACTCATTTTCAACCAAATTATCTATCGAAAAAAATTCAAAACAAAA
*
6961629 AACATTATGCAAAAATATAATGTTTCGTATAAATATTAATACGATAAATCAACTTATAACTTCTC
261 AACATTATGCAAAAACATAATGTTTCGTATAAATATTAATACGATAAATCAACTTATAACTTCTC
6961694 AACTTCTTCA
326 AACTTCTTCA
6961704 GTTTCTATTC
Statistics
Matches: 321, Mismatches: 13, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
335 206 0.64
336 115 0.36
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (336 bp):
TTAAGGGATCAATCGAACCACAAAATCAATACTTAATAGACGAAACTCTCATTGGCGTCGTTCCG
AAAATTTTACGCCTAATTCTTTTACAAAGTTCTATTAATTCTATGTTCTGGTTAAAAACCAGTCG
CGCTGTGTTCTTTGATATAAAAACAATACCGTTCTCGGTGTCATAGACCTCACCATCATAGTAAA
TAAGAACACGAATACGTTCACTCATTTTCAACCAAATTATCTATCGAAAAAAATTCAAAACAAAA
AACATTATGCAAAAACATAATGTTTCGTATAAATATTAATACGATAAATCAACTTATAACTTCTC
AACTTCTTCAA
Found at i:6962109 original size:156 final size:156
Alignment explanation
Indices: 6961818--6962144 Score: 478
Period size: 156 Copynumber: 2.1 Consensus size: 156
6961808 TTAGGAGCTT
*
6961818 TTTTTCAGTACATTTGCTGACAGTGCATCCTACTTGAAGTGTTTTTCAACCCCAACTATCAGATT
1 TTTTTCAGTACATTTGCTGACAGTGCATCCTACTTGAAGCGTTTTTCAACCCCAACTATCAGATT
*
6961883 TCCCATGAATCCCGAGATATTTTTTCAGAACCATCTTTTCGAAATTATTTTTTCAGAATCAACTG
66 TCCCATGAATCCCGAGATATTTTTTCAGAACCATCTTTTCAAAATTATTTTTTCAGAATCAACTG
*
6961948 TACAAAAAAAGCGTCAAACTGGGAGC
131 CACAAAAAAAGCGTCAAACTGGGAGC
* * * * *
6961974 TTTTTCAGTACTTTTGCTGACAGTGTATCCTGCTTGAAGCGTTTTTCATCCCTAACTATCAGATT
1 TTTTTCAGTACATTTGCTGACAGTGCATCCTACTTGAAGCGTTTTTCAACCCCAACTATCAGATT
* ** *
6962039 TCCCGTGAATTTCGAGATATTTTTTCAGAACCATCTTCTT-AAAATTATTTTTTCAGAATCAATT
66 TCCCATGAATCCCGAGATATTTTTTCAGAACCATCTT-TTCAAAATTATTTTTTCAGAATCAACT
* * * *
6962103 GCACAAAAAAAGCGTCCAGCTAGAAGC
130 GCACAAAAAAAGCGTCAAACTGGGAGC
6962130 TTTTTCTA-TACATTT
1 TTTTTC-AGTACATTT
6962145 ATTGATTGTA
Statistics
Matches: 152, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
156 149 0.98
157 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (156 bp):
TTTTTCAGTACATTTGCTGACAGTGCATCCTACTTGAAGCGTTTTTCAACCCCAACTATCAGATT
TCCCATGAATCCCGAGATATTTTTTCAGAACCATCTTTTCAAAATTATTTTTTCAGAATCAACTG
CACAAAAAAAGCGTCAAACTGGGAGC
Found at i:6962215 original size:28 final size:30
Alignment explanation
Indices: 6962184--6962252 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 30
6962174 AAAAATAATC
* *
6962184 TTTTCAGAACACATCAAGCC-AAATTTA-T
1 TTTTCAGAACACATAAACCCTAAATTTATT
* *
6962212 TTTTCATAAC-CCTAAACCCTAAATTTATT
1 TTTTCAGAACACATAAACCCTAAATTTATT
6962241 TTTTCCAGAACA
1 TTTT-CAGAACA
6962253 AAACTTACCA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
27 6 0.19
28 16 0.50
29 5 0.16
30 5 0.16
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.36
Consensus pattern (30 bp):
TTTTCAGAACACATAAACCCTAAATTTATT
Found at i:6962312 original size:28 final size:28
Alignment explanation
Indices: 6962275--6962347 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
6962265 TAAAAATCTT
6962275 AAAACCCTAAACCCTAATATATTTATTA
1 AAAACCCTAAACCCTAATATATTTATTA
* * *
6962303 AAAACCCTAAACCTTAATTTATTTTTTA
1 AAAACCCTAAACCCTAATATATTTATTA
* *
6962331 AAAAACCTTAACCCTAA
1 AAAACCCTAAACCCTAA
6962348 ACTCTAAAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (28 bp):
AAAACCCTAAACCCTAATATATTTATTA
Found at i:6962602 original size:29 final size:29
Alignment explanation
Indices: 6962547--6962603 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
6962537 GGTTTTTTGG
**
6962547 CCCATTCTGAGAAATAATCTTTTAAATGA
1 CCCATTCTGAGAAATAATCTTGGAAATGA
*
6962576 CCCATTTCTGA-AAATAATGTTGGAAATG
1 CCCA-TTCTGAGAAATAATCTTGGAAATG
6962604 GGCCTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (29 bp):
CCCATTCTGAGAAATAATCTTGGAAATGA
Found at i:6963683 original size:32 final size:32
Alignment explanation
Indices: 6963642--6963709 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
6963632 AATATAATAT
6963642 TTTTTTGACAAGTTCAGGAACCAACTAGATAC
1 TTTTTTGACAAGTTCAGGAACCAACTAGATAC
* * *
6963674 TTTTTTGACAAGTTCCGGTATCAACTAGATAC
1 TTTTTTGACAAGTTCAGGAACCAACTAGATAC
6963706 TTTT
1 TTTT
6963710 GGACAAGCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (32 bp):
TTTTTTGACAAGTTCAGGAACCAACTAGATAC
Found at i:6969513 original size:3 final size:3
Alignment explanation
Indices: 6969494--6969543 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
6969484 AATTTATTTC
* * *
6969494 ATA AT- ATA ATA ACA ATA ATA TTA ATA ATA ACA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6969540 ATA A
1 ATA A
6969544 AATGTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:6969522 original size:18 final size:18
Alignment explanation
Indices: 6969494--6969540 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
6969484 AATTTATTTC
6969494 ATAAT-ATAATAACAATA
1 ATAATAATAATAACAATA
*
6969511 ATATTAATAATAACAATA
1 ATAATAATAATAACAATA
6969529 ATAATAA-AATAA
1 ATAATAATAATAA
6969541 TAAAATGTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAACAATA
Found at i:6973347 original size:20 final size:20
Alignment explanation
Indices: 6973322--6973362 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
6973312 ATATCATATA
6973322 AAAGACCATACATTATAAAT
1 AAAGACCATACATTATAAAT
*
6973342 AAAGACCATGCATTATAAAT
1 AAAGACCATACATTATAAAT
6973362 A
1 A
6973363 CCAAAGAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.24
Consensus pattern (20 bp):
AAAGACCATACATTATAAAT
Found at i:6975373 original size:17 final size:18
Alignment explanation
Indices: 6975339--6975384 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
6975329 CCGTTATGTC
6975339 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
6975354 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
6975371 CGCGACCGCGACCG
1 CGCGACCGCGACCG
6975385 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:6977887 original size:18 final size:19
Alignment explanation
Indices: 6977851--6977888 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6977841 TATATTTGCC
6977851 TATATAAATGCATATTCAT
1 TATATAAATGCATATTCAT
6977870 TATATAGAAT-CA-ATTCAT
1 TATATA-AATGCATATTCAT
6977888 T
1 T
6977889 CATTTTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 8 0.44
20 3 0.17
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (19 bp):
TATATAAATGCATATTCAT
Found at i:6978194 original size:20 final size:21
Alignment explanation
Indices: 6978160--6978200 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
6978150 CACATTCATA
*
6978160 TATTTTTTTATCTATCTTCTT
1 TATTTTCTTATCTATCTTCTT
*
6978181 TATTTTCTTA-CTATTTTCTT
1 TATTTTCTTATCTATCTTCTT
6978201 CTTGTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (21 bp):
TATTTTCTTATCTATCTTCTT
Found at i:6981151 original size:124 final size:126
Alignment explanation
Indices: 6980871--6981155 Score: 300
Period size: 124 Copynumber: 2.3 Consensus size: 126
6980861 GAACATAGAC
6980871 AACAAAACAATTATCCTAATTATCAA-TTTCT-TT-TCTTCTCTCGGCCAACTTCATCTCTTCCA
1 AACAAAACAATTATCCT-ATTATCAATTTTCTCTTCTCTTCTCTCGGCCAACTTCATCTCTTCCA
* * * * * * * *
6980933 CGGGAAGATATATATAGCTAATGAACTTTCATTTTAAATGTCATTATGAAGACGATAAAGAG
65 CGGAAAGACATATATACCTAATGAACATTCACTTTAAATATCATTATGAAGACAATAAAAAG
* * ** * * *
6980995 AACAAAACAATTATTCTA--A-CTATTGACTTCTTCTCTTCTCTCGGTCAAGTTCATCTCTTTCA
1 AACAAAACAATTATCCTATTATCAATTTTC-TCTTCTCTTCTCTCGGCCAACTTCATCTCTTCCA
* * *
6981057 CTGAAAGACATATA-ACCT-ATGAACATTC-CTTTAAATATCTTTATGAAGATAATAAAAAG
65 CGGAAAGACATATATACCTAATGAACATTCACTTTAAATATCATTATGAAGACAATAAAAAG
* *
6981116 CACAAGACAATTATCCTATTTATCAATTTTCTCTTCTCTT
1 AACAAAACAATTATCCTA-TTATCAATTTTCTCTTCTCTT
6981156 TTGACCAAAT
Statistics
Matches: 129, Mismatches: 24, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
120 2 0.02
121 43 0.33
122 10 0.08
123 6 0.05
124 63 0.49
125 5 0.04
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (126 bp):
AACAAAACAATTATCCTATTATCAATTTTCTCTTCTCTTCTCTCGGCCAACTTCATCTCTTCCAC
GGAAAGACATATATACCTAATGAACATTCACTTTAAATATCATTATGAAGACAATAAAAAG
Found at i:6982043 original size:20 final size:21
Alignment explanation
Indices: 6982018--6982058 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
6982008 AACTTTCAGA
6982018 GATTTATA-TACTAACTGTTT
1 GATTTATAGTACTAACTGTTT
*
6982038 GATTTATAGTTCTAACTGTTT
1 GATTTATAGTACTAACTGTTT
6982059 TGTTGGGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (21 bp):
GATTTATAGTACTAACTGTTT
Found at i:6986320 original size:12 final size:11
Alignment explanation
Indices: 6986305--6986358 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 11
6986295 TTTTCTTATA
6986305 TTTTTAATAATT
1 TTTTTAA-AATT
6986317 TTTTTAAAA--
1 TTTTTAAAATT
6986326 TTTTTAAAA-T
1 TTTTTAAAATT
6986336 TTTTT-AAA-T
1 TTTTTAAAATT
6986345 TTTTT-AAATT
1 TTTTTAAAATT
6986355 TTTT
1 TTTT
6986359 AATTTAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
9 21 0.52
10 10 0.25
11 2 0.05
12 7 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTTAAAATT
Found at i:6986344 original size:18 final size:18
Alignment explanation
Indices: 6986304--6986360 Score: 78
Period size: 18 Copynumber: 3.0 Consensus size: 18
6986294 TTTTTCTTAT
6986304 ATTTTTAATAATTTTTTTAAA
1 ATTTTTAA-AA-TTTTTT-AA
6986325 ATTTTTAAAATTTTTTAA
1 ATTTTTAAAATTTTTTAA
*
6986343 ATTTTTTAAATTTTTTAA
1 ATTTTTAAAATTTTTTAA
6986361 TTTAAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
18 19 0.54
19 6 0.17
20 2 0.06
21 8 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTTAAAATTTTTTAA
Found at i:6986363 original size:8 final size:9
Alignment explanation
Indices: 6986316--6986360 Score: 72
Period size: 9 Copynumber: 4.9 Consensus size: 9
6986306 TTTTAATAAT
6986316 TTTTTTAAAA
1 TTTTTT-AAA
*
6986326 TTTTTAAAA
1 TTTTTTAAA
6986335 TTTTTTAAA
1 TTTTTTAAA
6986344 TTTTTTAAA
1 TTTTTTAAA
6986353 TTTTTTAA
1 TTTTTTAA
6986361 TTTAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
9 28 0.85
10 5 0.15
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:6988858 original size:2 final size:2
Alignment explanation
Indices: 6988851--6988880 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6988841 TACCTTTTTA
6988851 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6988881 GTATGTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6989088 original size:31 final size:31
Alignment explanation
Indices: 6989035--6989095 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
6989025 AATTATACAA
* *
6989035 ATAAAATTTTGATTGTGGTTCAAATGTATAT
1 ATAAAATTTTAATTGTGATTCAAATGTATAT
*
6989066 ATAAAATTTTAATCTG-GATTCAATTGTATA
1 ATAAAATTTTAAT-TGTGATTCAAATGTATA
6989096 CATTTAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (31 bp):
ATAAAATTTTAATTGTGATTCAAATGTATAT
Found at i:6989965 original size:35 final size:35
Alignment explanation
Indices: 6989912--6989979 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
6989902 CACTCAAAGT
* *
6989912 AATTATTCTTGAATCTTTTAGTTTGATTCGGAAGG
1 AATTATTCTCGAAACTTTTAGTTTGATTCGGAAGG
6989947 AATTATTCTCGAAACTTTTAGTTTGATTCGGAA
1 AATTATTCTCGAAACTTTTAGTTTGATTCGGAA
6989980 AAACCTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (35 bp):
AATTATTCTCGAAACTTTTAGTTTGATTCGGAAGG
Found at i:6990335 original size:15 final size:14
Alignment explanation
Indices: 6990301--6990336 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
6990291 TAAAATTTTA
6990301 ATAAATTAAAATAT
1 ATAAATTAAAATAT
6990315 ATTAAATTAAAATAAT
1 A-TAAATTAAAAT-AT
6990331 ATAAAT
1 ATAAAT
6990337 ATATGTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 16 0.80
16 3 0.15
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAATTAAAATAT
Found at i:6993714 original size:9 final size:9
Alignment explanation
Indices: 6993697--6993790 Score: 73
Period size: 9 Copynumber: 10.0 Consensus size: 9
6993687 ATATTTAATT
*
6993697 TTATTAAAA
1 TTATAAAAA
*
6993706 TTAGAAAAAGA
1 TTA-TAAAA-A
6993717 TTATAAAAA
1 TTATAAAAA
*
6993726 TCATAAAAAA
1 TTAT-AAAAA
6993736 TTATAAAAA
1 TTATAAAAA
* **
6993745 TTGTAAATT
1 TTATAAAAA
6993754 TTATAAAAA
1 TTATAAAAA
*
6993763 TGATAAAAAA
1 TTAT-AAAAA
6993773 TTAT-AAAA
1 TTATAAAAA
6993781 TATATAAAAA
1 T-TATAAAAA
6993791 AATAGAAAAA
Statistics
Matches: 66, Mismatches: 13, Indels: 11
0.73 0.14 0.12
Matches are distributed among these distances:
8 5 0.08
9 30 0.45
10 27 0.41
11 4 0.06
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:6993733 original size:19 final size:18
Alignment explanation
Indices: 6993710--6993804 Score: 93
Period size: 19 Copynumber: 5.1 Consensus size: 18
6993700 TTAAAATTAG
6993710 AAAAAGATTATAAAAATCAT
1 AAAAA-ATTATAAAAAT-AT
6993730 AAAAAATTATAAAAAT-T
1 AAAAAATTATAAAAATAT
* **
6993747 GTAAATTTTATAAAAATGAT
1 -AAAAAATTATAAAAAT-AT
6993767 AAAAAATTATAAAATATAT
1 AAAAAATTATAAAA-ATAT
* *
6993786 AAAAAAATAGAAAAATAT
1 AAAAAATTATAAAAATAT
6993804 A
1 A
6993805 TATACAATTT
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
17 1 0.02
18 18 0.29
19 36 0.57
20 8 0.13
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (18 bp):
AAAAAATTATAAAAATAT
Found at i:6993751 original size:28 final size:27
Alignment explanation
Indices: 6993702--6993806 Score: 77
Period size: 28 Copynumber: 3.7 Consensus size: 27
6993692 TAATTTTATT
*
6993702 AAAATTAGAAAAAGATTATAAAAATCATAA
1 AAAATTA-TAAAA-ATTATAAAAAT-ATAA
* * *
6993732 AAAATTATAAAAATTGT-AAATTTTATA
1 AAAATTATAAAAATTATAAAAATATA-A
*
6993759 AAAATGATAAAAAATTATAAAATATATAA
1 AAAATTAT-AAAAATTATAAAA-ATATAA
* *
6993788 AAAAATAGAAAAATATATA
1 AAAATTATAAAAAT-TATA
6993807 TACAATTTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
26 2 0.03
27 12 0.20
28 18 0.31
29 17 0.29
30 10 0.17
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.29
Consensus pattern (27 bp):
AAAATTATAAAAATTATAAAAATATAA
Found at i:6993773 original size:10 final size:9
Alignment explanation
Indices: 6993758--6993804 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
6993748 TAAATTTTAT
6993758 AAAAATGATA
1 AAAAAT-ATA
6993768 AAAAATTATA
1 AAAAA-TATA
*
6993778 AAATATATA
1 AAAAATATA
6993787 AAAAA-ATA
1 AAAAATATA
6993795 GAAAAATATA
1 -AAAAATATA
6993805 TATACAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 3 0.09
9 13 0.41
10 15 0.47
11 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (9 bp):
AAAAATATA
Found at i:6994072 original size:9 final size:9
Alignment explanation
Indices: 6994060--6994216 Score: 94
Period size: 9 Copynumber: 17.4 Consensus size: 9
6994050 TTTTTATGGA
6994060 TTTTATAATTT
1 TTTTATAA--T
*
6994071 TTTTATGAT
1 TTTTATAAT
*
6994080 TTTTATAAAA
1 TTTTAT-AAT
*
6994090 TTTTACAAT
1 TTTTATAAT
*
6994099 TTTTATATT
1 TTTTATAAT
*
6994108 TTTTACAAT
1 TTTTATAAT
*
6994117 TTTTATATTT
1 TTTTATA-AT
*
6994127 TTTTCTAAT
1 TTTTATAAT
*
6994136 TTTTAGTAAA
1 TTTTA-TAAT
6994146 TTTTA-AAT
1 TTTTATAAT
6994154 ATTTT-T--T
1 -TTTTATAAT
* *
6994161 TATTA-AAG
1 TTTTATAAT
*
6994169 TTTAATAAT
1 TTTTATAAT
6994178 TTTTATAAT
1 TTTTATAAT
*
6994187 TTTTATTGAT
1 TTTTA-TAAT
6994197 TTTTAT--T
1 TTTTATAAT
6994204 TTTTATAAT
1 TTTTATAAT
6994213 TTTT
1 TTTT
6994217 TGTCACATCT
Statistics
Matches: 111, Mismatches: 23, Indels: 26
0.69 0.14 0.16
Matches are distributed among these distances:
6 3 0.03
7 8 0.07
8 5 0.05
9 59 0.53
10 29 0.26
11 7 0.06
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:6994072 original size:20 final size:20
Alignment explanation
Indices: 6994049--6994140 Score: 68
Period size: 19 Copynumber: 4.8 Consensus size: 20
6994039 TTAAAGGGCA
6994049 TTTTTTATGGA-TTTTATAAT
1 TTTTTTAT-GATTTTTATAAT
6994069 TTTTTTATGATTTTTATAA-
1 TTTTTTATGATTTTTATAAT
** **
6994088 AATTTTACAATTTTTAT-A-
1 TTTTTTATGATTTTTATAAT
**
6994106 TTTTTTACAATTTTTAT-AT
1 TTTTTTATGATTTTTATAAT
* *
6994125 TTTTTTCTAATTTTTA
1 TTTTTTATGATTTTTA
6994141 GTAAATTTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
18 17 0.27
19 29 0.47
20 16 0.26
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.66
Consensus pattern (20 bp):
TTTTTTATGATTTTTATAAT
Found at i:6994160 original size:22 final size:21
Alignment explanation
Indices: 6994135--6994181 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
6994125 TTTTTTCTAA
* *
6994135 TTTTTAGTAAATTTTAAATATT
1 TTTTTAGTAAAGTTT-AATAAT
*
6994157 TTTTTATTAAAGTTTAATAAT
1 TTTTTAGTAAAGTTTAATAAT
6994178 TTTT
1 TTTT
6994182 ATAATTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTTTAGTAAAGTTTAATAAT
Found at i:6994189 original size:31 final size:30
Alignment explanation
Indices: 6994114--6994190 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 30
6994104 TATTTTTTAC
** *
6994114 AATTTTTAT-ATTTTTTTCTAATTTTTAGT
1 AATTTTTATAATTTTTTTCTAAAGTTTAAT
* * *
6994143 AAATTTTAAATATTTTTTTATTAAAGTTTAAT
1 AATTTTTATA-ATTTTTTT-CTAAAGTTTAAT
6994175 AATTTTTATAATTTTT
1 AATTTTTATAATTTTT
6994191 ATTGATTTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 7 0.19
31 14 0.38
32 16 0.43
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (30 bp):
AATTTTTATAATTTTTTTCTAAAGTTTAAT
Found at i:6994191 original size:19 final size:19
Alignment explanation
Indices: 6994060--6994216 Score: 90
Period size: 19 Copynumber: 8.2 Consensus size: 19
6994050 TTTTTATGGA
* *
6994060 TTTTATAATTTTTTTATGAT
1 TTTTATAA-TTTTTAATAAT
* *
6994080 TTTTATAAAATTTT-ACAAT
1 TTTTAT-AATTTTTAATAAT
* *
6994099 TTTTAT-ATTTTTTACAAT
1 TTTTATAATTTTTAATAAT
* **
6994117 TTTTATATTTTTTTCTAAT
1 TTTTATAATTTTTAATAAT
* *
6994136 TTTTAGTAAATTTTAAATATTT
1 TTTTA-T-AATTTTTAATA-AT
**
6994158 TTTTATTAAAGTTTAATAAT
1 TTTTA-TAATTTTTAATAAT
* *
6994178 TTTTATAATTTTTATTGAT
1 TTTTATAATTTTTAATAAT
6994197 TTTTAT--TTTTT-ATAAT
1 TTTTATAATTTTTAATAAT
6994213 TTTT
1 TTTT
6994217 TGTCACATCT
Statistics
Matches: 108, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
16 7 0.06
17 10 0.09
18 11 0.10
19 39 0.36
20 17 0.16
21 17 0.16
22 7 0.06
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTTATAATTTTTAATAAT
Found at i:7000303 original size:42 final size:43
Alignment explanation
Indices: 7000224--7000374 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 43
7000214 CCAGACATGA
* * *
7000224 TCTTACATGTAATCAAATATCGATGCCACTGTCCTAGACAGGG
1 TCTTACACGAAATCAAATATCGATGCCAATGTCCTAGACAGGG
* * *
7000267 TCTTACACGAAATCATATA-CGATGGCAATGTCCTAGACATGG
1 TCTTACACGAAATCAAATATCGATGCCAATGTCCTAGACAGGG
* * * * *
7000309 TCTTACACGTAAATCTCAA-ATCGATACCAACGTCCCAAAC-GTGG
1 TCTTACACG-AAATC-AAATATCGATGCCAATGTCCTAGACAG-GG
* *
7000353 TCTTACACGAGATCACATATCG
1 TCTTACACGAAATCAAATATCG
7000375 GAATCCTATG
Statistics
Matches: 86, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 30 0.35
43 30 0.35
44 26 0.30
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
TCTTACACGAAATCAAATATCGATGCCAATGTCCTAGACAGGG
Found at i:7003994 original size:17 final size:18
Alignment explanation
Indices: 7003937--7004011 Score: 80
Period size: 17 Copynumber: 4.0 Consensus size: 18
7003927 TAGAAAAAAA
7003937 TTTAAATTTATAAATTTT
1 TTTAAATTTATAAATTTT
*
7003955 TTTATATATTCTTTAGAATTTT
1 TTTA-A-ATT-TATA-AATTTT
7003977 TTTAAATTTATAAA-TTT
1 TTTAAATTTATAAATTTT
**
7003994 TTTAAAAATATAAATTTT
1 TTTAAATTTATAAATTTT
7004012 GGATTTTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
17 15 0.31
18 9 0.19
19 4 0.08
20 6 0.12
21 4 0.08
22 10 0.21
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (18 bp):
TTTAAATTTATAAATTTT
Found at i:7004047 original size:23 final size:23
Alignment explanation
Indices: 7003992--7004048 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
7003982 ATTTATAAAT
*
7003992 TTTTTAAAAATATAAATTTTGGA
1 TTTTTAAAAATATAAATTTTGAA
* *
7004015 TTTTAAAAAATATATATTTTGAA
1 TTTTTAAAAATATAAATTTTGAA
*
7004038 TTTTTGAAAAT
1 TTTTTAAAAAT
7004049 TATTTTAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (23 bp):
TTTTTAAAAATATAAATTTTGAA
Found at i:7005664 original size:21 final size:21
Alignment explanation
Indices: 7005625--7005754 Score: 165
Period size: 21 Copynumber: 6.3 Consensus size: 21
7005615 AAATGAGCCG
7005625 ACAGAAGCT--TAAAAGCTGA
1 ACAGAAGCTCATAAAAGCTGA
* *
7005644 ACAGAAGCTCGTAAGAGCTGA
1 ACAGAAGCTCATAAAAGCTGA
* *
7005665 ACAGAAACTCATAAGAGCTGA
1 ACAGAAGCTCATAAAAGCTGA
* * *
7005686 ACAGAAACTCATAAGAGTTGA
1 ACAGAAGCTCATAAAAGCTGA
*
7005707 ACAGAAGCTCGTAAAAGCTGA
1 ACAGAAGCTCATAAAAGCTGA
*
7005728 ACAGAAGCTCATAAAAGCTAA
1 ACAGAAGCTCATAAAAGCTGA
7005749 ACAGAA
1 ACAGAA
7005755 AGTAAAACAC
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
19 9 0.09
21 90 0.91
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (21 bp):
ACAGAAGCTCATAAAAGCTGA
Found at i:7006565 original size:16 final size:16
Alignment explanation
Indices: 7006536--7006569 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7006526 TAACAATCTC
*
7006536 AAAAATATAAAAATTA
1 AAAAAAATAAAAATTA
*
7006552 AAAAAAATAGAAATTA
1 AAAAAAATAAAAATTA
7006568 AA
1 AA
7006570 CTCACATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
AAAAAAATAAAAATTA
Found at i:7009364 original size:162 final size:162
Alignment explanation
Indices: 7009094--7009413 Score: 525
Period size: 162 Copynumber: 2.0 Consensus size: 162
7009084 GTTAGTTGGT
* * *
7009094 TAAATTTGGCGGTGGTCGGTTAAGTCGGATAAGTCAGGAAAATCGACCAAACTAACTAACAACCA
1 TAAATTTGGCGGTGGTCGGTTAAGGCGGATAAGTCAGGAAAATCGACCAAACCAACTAAAAACCA
* * *
7009159 AGTATTCTCCCCTGTTAATGGTGGTTGATGATTGTTTGCATTGTGGTGTCAAGAGCCGATGAGTA
66 AGTACTCTCACCTGTTAATGGTGGTTGATGATTGTTCGCATTGTGGTGTCAAGAGCCGATGAGTA
7009224 TAGCTTTGGTGATTAAGGAGAAAGGTCCTATG
131 TAGCTTTGGTGATTAAGGAGAAAGGTCCTATG
* * *
7009256 TAAATTTGGCGGTGGTTGGTTAAGGCGGATAAGTCATGAAAATCGACCAATCCAACTAAAAACCA
1 TAAATTTGGCGGTGGTCGGTTAAGGCGGATAAGTCAGGAAAATCGACCAAACCAACTAAAAACCA
* *
7009321 ATTACTCTCACCTAG-TAATGGTGGTTGATGATTGTTCGCATTGTGGTGTCAAGAGCTGATGAGT
66 AGTACTCTCACCT-GTTAATGGTGGTTGATGATTGTTCGCATTGTGGTGTCAAGAGCCGATGAGT
7009385 ATAGCTTTGGTGATTAAGGAGAAAGGTCC
130 ATAGCTTTGGTGATTAAGGAGAAAGGTCC
7009414 AAGGTTATAG
Statistics
Matches: 146, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
162 145 0.99
163 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (162 bp):
TAAATTTGGCGGTGGTCGGTTAAGGCGGATAAGTCAGGAAAATCGACCAAACCAACTAAAAACCA
AGTACTCTCACCTGTTAATGGTGGTTGATGATTGTTCGCATTGTGGTGTCAAGAGCCGATGAGTA
TAGCTTTGGTGATTAAGGAGAAAGGTCCTATG
Found at i:7012387 original size:17 final size:17
Alignment explanation
Indices: 7012365--7012398 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7012355 TTACCTCGTT
7012365 CCATGATAAATATATAA
1 CCATGATAAATATATAA
7012382 CCATGATAAATATATAA
1 CCATGATAAATATATAA
7012399 TCTTGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (17 bp):
CCATGATAAATATATAA
Found at i:7024306 original size:28 final size:28
Alignment explanation
Indices: 7024266--7024323 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
7024256 GTACATAAGT
7024266 ATTGGGATAATTTAATACTTGGCTCTAA
1 ATTGGGATAATTTAATACTTGGCTCTAA
7024294 ATTGGGATAATTTAATACTTGGCTCTAA
1 ATTGGGATAATTTAATACTTGGCTCTAA
7024322 AT
1 AT
7024324 CGTATCCAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (28 bp):
ATTGGGATAATTTAATACTTGGCTCTAA
Found at i:7026897 original size:72 final size:72
Alignment explanation
Indices: 7026812--7026951 Score: 262
Period size: 72 Copynumber: 1.9 Consensus size: 72
7026802 GGTTTCACCA
*
7026812 ATTTTCTTTATTATGGGATACCATCTAGAAATAAAAATAAGTAATATTAAAATATTTCTTAGAAT
1 ATTTTCTTTATTATGGGATACCATCTAGAAATAAAAATAAGTAATATTAAAATATTTCTTACAAT
7026877 TATGATC
66 TATGATC
*
7026884 ATTTTGTTTATTATGGGATACCATCTAGAAATAAAAATAAGTAATATTAAAATATTTCTTACAAT
1 ATTTTCTTTATTATGGGATACCATCTAGAAATAAAAATAAGTAATATTAAAATATTTCTTACAAT
7026949 TAT
66 TAT
7026952 CATCCACTTT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (72 bp):
ATTTTCTTTATTATGGGATACCATCTAGAAATAAAAATAAGTAATATTAAAATATTTCTTACAAT
TATGATC
Found at i:7031205 original size:23 final size:24
Alignment explanation
Indices: 7031168--7031215 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
7031158 TTACGTTTAA
7031168 TTTTTTTAAAATTAA-AAATTATT
1 TTTTTTTAAAATTAATAAATTATT
** *
7031191 TTTTTTTAATTTTAATATATTATT
1 TTTTTTTAAAATTAATAAATTATT
7031215 T
1 T
7031216 ATTATTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTTTTTAAAATTAATAAATTATT
Found at i:7042799 original size:139 final size:139
Alignment explanation
Indices: 7042549--7042827 Score: 549
Period size: 139 Copynumber: 2.0 Consensus size: 139
7042539 TATTTATACT
*
7042549 AGCTCTACCATCAAGAACTAGTATAACCATTTTCTCCTAATTCCATGGCCTTAATTGGAGGTTAT
1 AGCTCTACCATCAAGAACTAGCATAACCATTTTCTCCTAATTCCATGGCCTTAATTGGAGGTTAT
7042614 GAGTATGTAAACAAGAATGTGAGAAGCGGTTAGTTGACCTTTTTTTCAAATGGTCCTCACAATAT
66 GAGTATGTAAACAAGAATGTGAGAAGCGGTTAGTTGACCTTTTTTTCAAATGGTCCTCACAATAT
7042679 GGACCATTA
131 GGACCATTA
7042688 AGCTCTACCATCAAGAACTAGCATAACCATTTTCTCCTAATTCCATGGCCTTAATTGGAGGTTAT
1 AGCTCTACCATCAAGAACTAGCATAACCATTTTCTCCTAATTCCATGGCCTTAATTGGAGGTTAT
7042753 GAGTATGTAAACAAGAATGTGAGAAGCGGTTAGTTGACCTTTTTTTCAAATGGTCCTCACAATAT
66 GAGTATGTAAACAAGAATGTGAGAAGCGGTTAGTTGACCTTTTTTTCAAATGGTCCTCACAATAT
7042818 GGACCATTA
131 GGACCATTA
7042827 A
1 A
7042828 AGCCACTTAA
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 139 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (139 bp):
AGCTCTACCATCAAGAACTAGCATAACCATTTTCTCCTAATTCCATGGCCTTAATTGGAGGTTAT
GAGTATGTAAACAAGAATGTGAGAAGCGGTTAGTTGACCTTTTTTTCAAATGGTCCTCACAATAT
GGACCATTA
Found at i:7049066 original size:25 final size:24
Alignment explanation
Indices: 7048994--7049079 Score: 57
Period size: 25 Copynumber: 3.5 Consensus size: 24
7048984 ATATGTAAAC
* * *
7048994 GGGAAGCTCTTTCGAGCCATATAAT
1 GGGAAGCTC-ATCAAGCTATATAAT
* ** *
7049019 GGGAAGCTCATGTAAATTGTATAAT
1 GGGAAGCTCAT-CAAGCTATATAAT
7049044 GGGAAGCTCAATCAAGCTATAT-AT
1 GGGAAGCTC-ATCAAGCTATATAAT
*
7049068 CGAGAAGCTCAT
1 -GGGAAGCTCAT
7049080 AAGAGCCATA
Statistics
Matches: 46, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
24 5 0.11
25 39 0.85
26 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (24 bp):
GGGAAGCTCATCAAGCTATATAAT
Found at i:7049094 original size:25 final size:24
Alignment explanation
Indices: 7049066--7049181 Score: 74
Period size: 25 Copynumber: 4.7 Consensus size: 24
7049056 CAAGCTATAT
7049066 ATCGAGAAGCTCATAAGAGCCATAA
1 ATCGAGAAGCTCATAAGAGCCA-AA
** *
7049091 ATCGAGAAGCTCATGCGAGCCAATT
1 ATCGAGAAGCTCATAAGAGCCAA-A
* * *
7049116 ATCGGGAAGTTCA-AGAGAGCCATTA
1 ATCGAGAAGCTCATA-AGAGCCA-AA
* *
7049141 ATCG-GAAAGCTCGTGAGAGCCAAA
1 ATCGAG-AAGCTCATAAGAGCCAAA
* *
7049165 TATCGGGATGCTCATAA
1 -ATCGAGAAGCTCATAA
7049182 AAGTTGTGGT
Statistics
Matches: 68, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
24 3 0.04
25 64 0.94
26 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (24 bp):
ATCGAGAAGCTCATAAGAGCCAAA
Found at i:7049119 original size:50 final size:50
Alignment explanation
Indices: 7049064--7049181 Score: 141
Period size: 50 Copynumber: 2.4 Consensus size: 50
7049054 ATCAAGCTAT
* *
7049064 ATATCGAGAAGCTCATAAGAGCCATAAATC-GAGAAGCTCATGCGAGCCAA
1 ATATCGGGAAGCTCATAAGAGCCATAAATCGGA-AAGCTCATGAGAGCCAA
* * * *
7049114 TTATCGGGAAGTTCA-AGAGAGCCATTAATCGGAAAGCTCGTGAGAGCCAA
1 ATATCGGGAAGCTCATA-AGAGCCATAAATCGGAAAGCTCATGAGAGCCAA
*
7049164 ATATCGGGATGCTCATAA
1 ATATCGGGAAGCTCATAA
7049182 AAGTTGTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
49 1 0.02
50 52 0.93
51 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.19
Consensus pattern (50 bp):
ATATCGGGAAGCTCATAAGAGCCATAAATCGGAAAGCTCATGAGAGCCAA
Found at i:7051837 original size:30 final size:31
Alignment explanation
Indices: 7051797--7051861 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
7051787 AAAAAACATC
7051797 ATTTTGACTC-TTTCAAAAAGTTGATGGTCAA
1 ATTTTGACTCTTTTCAAAAAGTTGATGGT-AA
* *
7051828 ATTTT-ACTCTTTTTAAAATGTTGATGGTAA
1 ATTTTGACTCTTTTCAAAAAGTTGATGGTAA
7051858 ATTT
1 ATTT
7051862 AACTTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 10 0.32
31 21 0.68
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
ATTTTGACTCTTTTCAAAAAGTTGATGGTAA
Found at i:7058068 original size:33 final size:33
Alignment explanation
Indices: 7058031--7058093 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
7058021 TTTTAAAGGG
*
7058031 TAGGGTTTTGTTTATTTAAATTAGGGTTTAAGT
1 TAGGGTTTTGTTTATTTAAAGTAGGGTTTAAGT
7058064 TAGGGTTTTGTTTATTTAAAGTAGGGTTTA
1 TAGGGTTTTGTTTATTTAAAGTAGGGTTTA
7058094 GGGTTTTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (33 bp):
TAGGGTTTTGTTTATTTAAAGTAGGGTTTAAGT
Found at i:7058094 original size:28 final size:30
Alignment explanation
Indices: 7058031--7058105 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 30
7058021 TTTTAAAGGG
*
7058031 TAGGGTTTTGTTTATTTAAATTAGGGTTTAAGT
1 TAGGGTTTTGTTTATTTAAAGTAGGG-TT-A-T
7058064 TAGGGTTTTGTTTATTTAAAGTAGGG-T-T
1 TAGGGTTTTGTTTATTTAAAGTAGGGTTAT
7058092 TAGGGTTTTTGTTT
1 TAGGG-TTTTGTTT
7058106 GAGATTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
28 6 0.15
29 8 0.20
31 1 0.03
33 25 0.62
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (30 bp):
TAGGGTTTTGTTTATTTAAAGTAGGGTTAT
Found at i:7061561 original size:27 final size:26
Alignment explanation
Indices: 7061508--7061563 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
7061498 TCAAATTTCA
7061508 CATGTATAATTACACCAAATCAAAGTT
1 CATGTATAATTACACCAAATC-AAGTT
*
7061535 CATGTATCGAATTGCACCAAATC-AGTT
1 CATGTAT--AATTACACCAAATCAAGTT
7061562 CA
1 CA
7061564 ATTCAGTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 13 0.50
29 13 0.50
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (26 bp):
CATGTATAATTACACCAAATCAAGTT
Found at i:7065157 original size:21 final size:21
Alignment explanation
Indices: 7065131--7065186 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
7065121 ACTAATTACC
*
7065131 AAAAAAAAATACAAAAA-CAAA
1 AAAAAAAAAGA-AAAAACCAAA
*
7065152 AAAAAAGAGAGAAAAAACCAAA
1 AAAAAA-AAAGAAAAAACCAAA
7065174 AAAAAAAAAGAAA
1 AAAAAAAAAGAAA
7065187 GAAGAGAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.84, C:0.07, G:0.07, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAAAAAACCAAA
Found at i:7068117 original size:28 final size:29
Alignment explanation
Indices: 7068084--7068138 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
7068074 AAAATAATCT
7068084 TTAAATAAAATAATAA-A-ATTTTTAAATA
1 TTAAATAAAA-AATAACATATTTTTAAATA
*
7068112 TTAAATAAAAATTAACATATTTTTAAA
1 TTAAATAAAAAATAACATATTTTTAAA
7068139 ATTTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 11 0.46
29 9 0.38
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (29 bp):
TTAAATAAAAAATAACATATTTTTAAATA
Found at i:7068144 original size:29 final size:27
Alignment explanation
Indices: 7068083--7068145 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 27
7068073 AAAAATAATC
7068083 TTTAAATAAAATAATAAAATTTTTAAA
1 TTTAAATAAAATAATAAAATTTTTAAA
*
7068110 TATTAAATAAAA-ATTAACATATTTTTAAAA
1 T-TTAAATAAAATAATAA-A-ATTTTT-AAA
7068140 TTTAAA
1 TTTAAA
7068146 AATAGAGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
27 5 0.16
28 11 0.35
29 11 0.35
30 4 0.13
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (27 bp):
TTTAAATAAAATAATAAAATTTTTAAA
Found at i:7069283 original size:15 final size:16
Alignment explanation
Indices: 7069251--7069288 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7069241 AAAATTAAAA
* *
7069251 TTAAAAAGAAGAGTAT
1 TTAAAAAAAAGAGCAT
7069267 TTAAAAAAAAGA-CAT
1 TTAAAAAAAAGAGCAT
7069282 TTAAAAA
1 TTAAAAA
7069289 TAAGTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.24
Consensus pattern (16 bp):
TTAAAAAAAAGAGCAT
Found at i:7080190 original size:15 final size:16
Alignment explanation
Indices: 7080170--7080202 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7080160 CGTTTGGTAC
7080170 TTCCCCTTGTGG-ATA
1 TTCCCCTTGTGGAATA
7080185 TTCCCCTTGTGGAATA
1 TTCCCCTTGTGGAATA
7080201 TT
1 TT
7080203 TTTAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.42
Consensus pattern (16 bp):
TTCCCCTTGTGGAATA
Found at i:7080289 original size:39 final size:38
Alignment explanation
Indices: 7080245--7080323 Score: 113
Period size: 39 Copynumber: 2.1 Consensus size: 38
7080235 GTAAAGGTGT
* * *
7080245 ATTAAAAGTCAGATTGTATTTTGTTTTTTTTTACTCAAA
1 ATTAAAAGTCAGAATGTATTTTG-TCTCTTTTACTCAAA
*
7080284 ATTAAAAGTTAGAATGTATTTTGTCTCTTTTACTCAAA
1 ATTAAAAGTCAGAATGTATTTTGTCTCTTTTACTCAAA
7080322 AT
1 AT
7080324 ATTAGTAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 15 0.42
39 21 0.58
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (38 bp):
ATTAAAAGTCAGAATGTATTTTGTCTCTTTTACTCAAA
Found at i:7081545 original size:15 final size:15
Alignment explanation
Indices: 7081527--7081578 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
7081517 TATTACAAAA
7081527 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
7081542 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
7081561 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
7081576 ATT
1 ATT
7081579 AATAATGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:7081618 original size:16 final size:17
Alignment explanation
Indices: 7081599--7081635 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
7081589 TTTTTCAGAA
7081599 TATTATTTAAAA-TTAT
1 TATTATTTAAAATTTAT
7081615 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
7081631 TATTA
1 TATTA
7081636 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:7082052 original size:13 final size:14
Alignment explanation
Indices: 7082016--7082047 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7082006 TAAAATGCAG
7082016 AAAATATTTTTCGT
1 AAAATATTTTTCGT
7082030 AAAATATTTTTCGT
1 AAAATATTTTTCGT
7082044 AAAA
1 AAAA
7082048 CTTTTCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (14 bp):
AAAATATTTTTCGT
Found at i:7082141 original size:18 final size:17
Alignment explanation
Indices: 7082110--7082156 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
7082100 TTTAGATTGT
7082110 ATATAAAAAT-ATAAAA
1 ATATAAAAATAATAAAA
7082126 ATATAAAAATACATAAAA
1 ATATAAAAATA-ATAAAA
*
7082144 A-ATTAAAATAATA
1 ATATAAAAATAATA
7082157 TTTGTTACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 13 0.46
17 8 0.29
18 7 0.25
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
ATATAAAAATAATAAAA
Found at i:7082144 original size:10 final size:8
Alignment explanation
Indices: 7082110--7082136 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7082100 TTTAGATTGT
7082110 ATATAAAA
1 ATATAAAA
7082118 ATATAAAA
1 ATATAAAA
7082126 ATATAAAA
1 ATATAAAA
7082134 ATA
1 ATA
7082137 CATAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
ATATAAAA
Found at i:7082615 original size:13 final size:13
Alignment explanation
Indices: 7082597--7082621 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7082587 ATTTACAAGA
7082597 TTACATAATCAAT
1 TTACATAATCAAT
7082610 TTACATAATCAA
1 TTACATAATCAA
7082622 CTTCTATCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:7083028 original size:16 final size:17
Alignment explanation
Indices: 7083003--7083047 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
7082993 TAGTCGCTTC
*
7083003 AAAA-TAATTTAATTAT
1 AAAATTAATTTAATGAT
7083019 -AAATTAATTT-ATGAT
1 AAAATTAATTTAATGAT
7083034 AAAATTACATTTAA
1 AAAATTA-ATTTAA
7083048 ATTTCTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
15 7 0.29
16 12 0.50
17 4 0.17
18 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
AAAATTAATTTAATGAT
Found at i:7083878 original size:126 final size:126
Alignment explanation
Indices: 7083645--7083915 Score: 497
Period size: 126 Copynumber: 2.2 Consensus size: 126
7083635 TTTTAAAATT
*
7083645 CTCTTTTGCTACAGTAGTTTTTGAAAAAATAATTTTGAGAAAATGTTTCTGAGCAAATAGTGTCA
1 CTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAAATGTTTCTGAGCAAATAGTGTCA
*
7083710 AAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTATTGAAAGAAGCTCCCACGTGGACG
66 AAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
* *
7083771 CTGTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAATATGTTTCTGAGCAAATAGTGTCA
1 CTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAAATGTTTCTGAGCAAATAGTGTCA
*
7083836 AAAATGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
66 AAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
7083897 CTCTTTTGCTACAGTAGTT
1 CTCTTTTGCTACAGTAGTT
7083916 CCTATTTGGC
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 139 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (126 bp):
CTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAAATGTTTCTGAGCAAATAGTGTCA
AAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTGGACG
Found at i:7086971 original size:52 final size:51
Alignment explanation
Indices: 7086904--7087047 Score: 139
Period size: 52 Copynumber: 2.7 Consensus size: 51
7086894 ATGTTGTATT
* *
7086904 ATTTATATTTTATTAAATGAAATAATATAAAAATATTACCTTATTTAAAAGA
1 ATTTATATTTTATTAAAT-AAATAATATAAAAATATTACCTTATTCAAAACA
* * *
7086956 ATTTCTATTTTATTAAA-AATATAAAAGTAAATTACA-ATTACTTTATTCAAAACA
1 ATTTATATTTTATTAAATAA-ATAATA-TAAA--A-ATATTACCTTATTCAAAACA
* *
7087010 ATCTTTTATTTTATTACATAAAATAATATAAAAATATT
1 AT-TTATATTTTATTAAAT-AAATAATATAAAAATATT
7087048 CAAAATATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
50 2 0.03
51 5 0.07
52 21 0.28
53 4 0.05
54 18 0.24
55 18 0.24
56 5 0.07
57 2 0.03
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (51 bp):
ATTTATATTTTATTAAATAAATAATATAAAAATATTACCTTATTCAAAACA
Found at i:7087065 original size:21 final size:22
Alignment explanation
Indices: 7087036--7087076 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7087026 CATAAAATAA
7087036 TATAAAAATAT-TCAAAATATT
1 TATAAAAATATATCAAAATATT
* *
7087057 TATACAAATATATTAAAATA
1 TATAAAAATATATCAAAATA
7087077 AAAATCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (22 bp):
TATAAAAATATATCAAAATATT
Found at i:7087069 original size:23 final size:20
Alignment explanation
Indices: 7087036--7087076 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
7087026 CATAAAATAA
7087036 TATAAAAATATTCAAAATATT
1 TATAAAAATATT-AAAATATT
7087057 TATACAAATATATTAAAATA
1 TATA-AAA-ATATTAAAATA
7087077 AAAATCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
TATAAAAATATTAAAATATT
Found at i:7087211 original size:21 final size:21
Alignment explanation
Indices: 7087160--7087220 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
7087150 TTGTCCAGCT
* * * *
7087160 TCCGGTGGGGTTTGTGGTTGC
1 TCCGGTAGGGATTCTGGTTCC
**
7087181 TCCGACAGGGATTCTGGTTCC
1 TCCGGTAGGGATTCTGGTTCC
7087202 TCCGGTAGGGGA-TCTGGTT
1 TCCGGTA-GGGATTCTGGTT
7087221 GTCGGTGTTG
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.08, C:0.20, G:0.39, T:0.33
Consensus pattern (21 bp):
TCCGGTAGGGATTCTGGTTCC
Found at i:7089294 original size:22 final size:22
Alignment explanation
Indices: 7089269--7089313 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7089259 TTTTTGAAAA
**
7089269 AAATTAAAGAGAGCTTTGAGAG
1 AAATTAAAGAGAAATTTGAGAG
**
7089291 AAATTTGAGAGAAATTTGAGAG
1 AAATTAAAGAGAAATTTGAGAG
7089313 A
1 A
7089314 TTGAAGATGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.02, G:0.27, T:0.24
Consensus pattern (22 bp):
AAATTAAAGAGAAATTTGAGAG
Found at i:7089313 original size:13 final size:11
Alignment explanation
Indices: 7089283--7089313 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
7089273 TAAAGAGAGC
7089283 TTTGAGAGAAA
1 TTTGAGAGAAA
7089294 TTTGAGAGAAA
1 TTTGAGAGAAA
7089305 TTTGAGAGA
1 TTTGAGAGA
7089314 TTGAAGATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:7089819 original size:32 final size:32
Alignment explanation
Indices: 7089727--7089825 Score: 97
Period size: 31 Copynumber: 3.3 Consensus size: 32
7089717 TTAATGTAAT
7089727 ATTTGGTA-TCTAAACTTGA--CATTTTTTCTTA
1 ATTTGGTACT-TAAACTTGATTC-TTTTTTCTTA
* * *
7089758 ATTTGTTACTTAGA-TT--TT-TTTTGTC-TA
1 ATTTGGTACTTAAACTTGATTCTTTTTTCTTA
7089785 ATTTGGTACTTAAACTTGATTCTTTTTTCTTA
1 ATTTGGTACTTAAACTTGATTCTTTTTTCTTA
7089817 ATTTGGTAC
1 ATTTGGTAC
7089826 GTAATCTATT
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
27 14 0.26
28 8 0.15
30 4 0.07
31 16 0.30
32 12 0.22
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (32 bp):
ATTTGGTACTTAAACTTGATTCTTTTTTCTTA
Found at i:7094743 original size:14 final size:14
Alignment explanation
Indices: 7094726--7094771 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
7094716 TTTTGGTATA
7094726 TAATTTATATATTT
1 TAATTTATATATTT
* *
7094740 TAATTT-GAGA-TT
1 TAATTTATATATTT
7094752 TAATTTATATATTT
1 TAATTTATATATTT
7094766 TAATTT
1 TAATTT
7094772 TTAATATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 8 0.31
13 4 0.15
14 14 0.54
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (14 bp):
TAATTTATATATTT
Found at i:7094781 original size:26 final size:26
Alignment explanation
Indices: 7094723--7094784 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
7094713 TAATTTTGGT
7094723 ATATAATTTATATATTTTAATTTGAG
1 ATATAATTTATATATTTTAATTTGAG
* *
7094749 ATTTAATTTATATATTTTAATTTTTA-
1 ATATAATTTATATATTTTAA-TTTGAG
7094775 ATATAATTTA
1 ATATAATTTA
7094785 GTGCCTCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 28 0.88
27 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (26 bp):
ATATAATTTATATATTTTAATTTGAG
Found at i:7100359 original size:18 final size:18
Alignment explanation
Indices: 7100338--7100381 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7100328 TTCAGTAGTT
**
7100338 TTATTATTTTGTTTATTA
1 TTATTATTTTCCTTATTA
* *
7100356 TTATCACTTTCCTTATTA
1 TTATTATTTTCCTTATTA
7100374 TTATTATT
1 TTATTATT
7100382 ATTATTTACC
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (18 bp):
TTATTATTTTCCTTATTA
Found at i:7100823 original size:21 final size:18
Alignment explanation
Indices: 7100792--7100831 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
7100782 TCGTTTTTGT
7100792 TCATTTTTTATTCACATTA
1 TCATTTTTTATTC-CATTA
7100811 TCATGTTTATTATTCCATTA
1 TCAT-TTT-TTATTCCATTA
7100831 T
1 T
7100832 GCATATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.25, C:0.15, G:0.03, T:0.57
Consensus pattern (18 bp):
TCATTTTTTATTCCATTA
Found at i:7101068 original size:110 final size:110
Alignment explanation
Indices: 7100875--7101233 Score: 657
Period size: 110 Copynumber: 3.3 Consensus size: 110
7100865 TTTTTAATTG
** *
7100875 AGGCAATGTTTTGCGTTTGGGAAATTCGGGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTCCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
7100940 TCATTCAACCAAATGGCTAAATATCATTTTAAAAATTTCAAAATA
66 TCATTCAACCAAATGGCTAAATATCATTTTAAAAATTTCAAAATA
7100985 AGGCAATGTTCCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTCCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
7101050 TCATTCAACCAAATGGCTAAATATCATTTTAAAAATTTCAAAATA
66 TCATTCAACCAAATGGCTAAATATCATTTTAAAAATTTCAAAATA
7101095 AGGCAATGTTCCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTCCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
*
7101160 TCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATA
66 TCATTCAACCAAATGGCTAAATATCATTTTAAAAATTTCAAAATA
**
7101205 AGGCAATGTTTTGCGTTT-GGAAATTCGAG
1 AGGCAATGTTCCGCGTTTGGGAAATTCGAG
7101234 GAACGTGCCC
Statistics
Matches: 243, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
109 11 0.05
110 232 0.95
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (110 bp):
AGGCAATGTTCCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
TCATTCAACCAAATGGCTAAATATCATTTTAAAAATTTCAAAATA
Found at i:7101984 original size:19 final size:19
Alignment explanation
Indices: 7101960--7101999 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7101950 TGTACCTATG
7101960 TCTTCGTGAGATTTTCATC
1 TCTTCGTGAGATTTTCATC
7101979 TCTTCGTGAGATTTTCATC
1 TCTTCGTGAGATTTTCATC
7101998 TC
1 TC
7102000 CGTGCAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.47
Consensus pattern (19 bp):
TCTTCGTGAGATTTTCATC
Found at i:7106961 original size:88 final size:88
Alignment explanation
Indices: 7106812--7107213 Score: 660
Period size: 88 Copynumber: 4.6 Consensus size: 88
7106802 AACAGATTAA
* * * * *
7106812 TGAAGACAATAGATCTTTCCTTCTTGCATTGACAGCGAAGTAGATCGAGGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
**
7106877 CTCTCGGTTGTAGTATAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
7106900 TGAAGACGACAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
7106965 CTCTCGGTTTTAGTGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
7106988 TGAAGACAACAGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
7107053 CTCTCGGTTGTAGTGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
7107076 TGAAGACAACAGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
7107141 CTCTCGGTTGTAGTGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
7107164 TGAAGACAACAAATCTTGCCTTCCTGCATTGACAGCGAAGCAGACCGAAG
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAG
7107214 CTGATAATTC
Statistics
Matches: 297, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 297 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (88 bp):
TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
CTCTCGGTTGTAGTGGAGCTGGT
Found at i:7107368 original size:95 final size:95
Alignment explanation
Indices: 7107210--7109443 Score: 3426
Period size: 95 Copynumber: 23.5 Consensus size: 95
7107200 GAAGCAGACC
* * ** * *
7107210 GAAGCTGATAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATAAAAAATGGAAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* *
7107275 TACCTCCCTGTGACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* **
7107305 GAAGCCGATAATTCTATCTCCCTGGTTGGTAGTGGAATAGATTGAAGATTAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* *
7107370 TACCTCCCTGTGACTACAGCGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * * *
7107400 GAAGCCGATAATTCTATTTCCTTGGTTGGTAGTGGAATAGATTGAAGATCGAAGATAGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* *
7107465 TACCTCCCTGTGGCTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * * *
7107495 GAAGTCGACAATTCTATTTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7107560 TACCTCCCTATGACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * ** * *
7107590 GAAGCCAATAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATAAAAAATGGAAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* *
7107655 TACCTCCCTGTGACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * * *
7107685 GAAGCCGATAATTCTATTTCCTTGGTTGGTAGT-GATATAGATTGAAGATCGAAGATAGCAGATT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGA-ATAGATTGAAGATCGAAGATGGCAGATT
* *
7107749 TTACCTCCCTGTGGCTACAGTGGAGTACATT
65 TTACCTCCTTGTGACTACAGTGGAGTACATT
* * * * *
7107780 GAAGTCGACAATTCTATTTCCTTGGTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7107845 TACATCCTTGTAACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* *
7107875 GAAGCCGATAATTCTATTTCCCTGGTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7107940 TACATCCTTGTAACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
*
7107970 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7108035 TACATCCTTGTAACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
*
7108065 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7108130 TACATCCTTGTAACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
*
7108160 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7108225 TACATCCTTGTAACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
*
7108255 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
*
7108320 TACCTCCCTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* *
7108350 GAAGCCGATAATTCTATTTCCCTGGTTGGCAGTGGAATAGATTGAACATCGAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* *
7108415 TACCTCCCTGTGGCTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * * * *
7108445 GAAGTCGACAATTCTATTTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAAATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
7108510 TACCTCCTTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7108540 GAAGCCAATAATTCTATCTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAAATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
7108605 TACCTCCTTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7108635 GAAGCCAATAATTCTATCTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAAATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
7108700 TACCTCCTTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7108730 GAAGCCAATAATTCTATCTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAAATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
7108795 TACCTCCTTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7108825 GAAGCCAATAATTCTATCTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAAATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
7108890 TACCTCCTTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7108920 GAAGCCAATAATTCTATCTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAAATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
7108985 TACCTCCTTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7109015 GAAGCCAATAATTCTATCTCCTTGGTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7109080 TACATCCTTGTAACTATAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7109110 GAAGCCGATAATTCTATTTCCCTGGTTGGCAGTGGAATAGATTGAACATCGAAGATGGAAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* *
7109175 TACCTCCCTGTGGCTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7109205 GAAGCCAATAATTCTATCTCCCTGGTTGGCAGTGGAATACATTGAAGATCAAAGATGGCAGATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
* * *
7109270 TACCTCCCTGTAACTACAGTAGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7109300 GAAGCCAATAATTCTATCTCCTTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAAATTT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
7109365 TACCTCCTTGTGACTACAGTGGAGTACATT
66 TACCTCCTTGTGACTACAGTGGAGTACATT
* * *
7109395 GAAGCCAATAATTCTATCTCCCTGGTTGGTAGTCGAATAGATTGAAGAT
1 GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGAT
7109444 TTCAGATCTT
Statistics
Matches: 2024, Mismatches: 113, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
94 2 0.00
95 2020 1.00
96 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (95 bp):
GAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTT
TACCTCCTTGTGACTACAGTGGAGTACATT
Found at i:7111032 original size:18 final size:18
Alignment explanation
Indices: 7111011--7111054 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7111001 TTCAGTAGTT
**
7111011 TTATTATTTTGTTTATTA
1 TTATTATTTTCCTTATTA
* *
7111029 TTATCACTTTCCTTATTA
1 TTATTATTTTCCTTATTA
7111047 TTATTATT
1 TTATTATT
7111055 ATTATTTACC
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (18 bp):
TTATTATTTTCCTTATTA
Found at i:7111716 original size:110 final size:110
Alignment explanation
Indices: 7111534--7111813 Score: 474
Period size: 110 Copynumber: 2.6 Consensus size: 110
7111524 TTTCTAATTG
*
7111534 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTTCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
7111599 TCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATA
66 TCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATA
*
7111644 AGGCAATGTTCCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTTCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
7111709 TCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATA
66 TCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATA
* * * * * *
7111754 AGTCAATGTTTGGCGTTT-GGAAATTCGAG-GAACATGCGCTAATGTGCTGGGTTTCGATTT
1 AGGCAATGTTTCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTT
7111814 CTCGATTGGC
Statistics
Matches: 161, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
108 27 0.17
109 11 0.07
110 123 0.76
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (110 bp):
AGGCAATGTTTCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
TCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATA
Found at i:7113045 original size:30 final size:30
Alignment explanation
Indices: 7113004--7113077 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
7112994 ATCAATGAGG
* ** * *
7113004 CCCAGACAATCACCTGGCCCATCATCAGCA
1 CCCACACAATCACCAAGCCCAGCAACAGCA
7113034 CCCACACAATCACCAAGCCCAGCAACAGCA
1 CCCACACAATCACCAAGCCCAGCAACAGCA
* *
7113064 CCGACACAGTCACC
1 CCCACACAATCACC
7113078 CGACCAGTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.34, C:0.46, G:0.12, T:0.08
Consensus pattern (30 bp):
CCCACACAATCACCAAGCCCAGCAACAGCA
Found at i:7113159 original size:18 final size:18
Alignment explanation
Indices: 7113136--7113174 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7113126 ATGCTAGGTG
* *
7113136 TGTATCCTAGCCCTTTTA
1 TGTATCCTAACCCTTATA
7113154 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
7113172 TGT
1 TGT
7113175 TTTCTTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.44
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:7113642 original size:34 final size:35
Alignment explanation
Indices: 7113598--7113665 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 35
7113588 ATGTTGAATA
*
7113598 TTTTGATATTATTTGATGTAATAAAATAGAAATTC
1 TTTTGATATTATTTCATGTAATAAAATAGAAATTC
7113633 TTTT-ATATTATTTCATGTAATAAAATAGAAATT
1 TTTTGATATTATTTCATGTAATAAAATAGAAATT
7113666 TCCTTTTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (35 bp):
TTTTGATATTATTTCATGTAATAAAATAGAAATTC
Found at i:7116312 original size:126 final size:126
Alignment explanation
Indices: 7116087--7116377 Score: 474
Period size: 126 Copynumber: 2.3 Consensus size: 126
7116077 CCAAACATGC
* * * *
7116087 GCTACTGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACTTTTGTTGACAAAGCATCTT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTATTGCTGACAAAGCATCCT
* *
7116152 GCTTAAAGCGTTTTTGACACTATTTACTCAGAAACGTCTACTCGAAATTATTTGTTCAGGA
66 GCTTAAAGCGTTTTTAACACTATTTACTCAGAAACGTCTACTCAAAATTATTTGTTCAGGA
*
7116213 GCTACTGTAGCAATAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTATTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTATTGCTGACAAAGCATCCT
* * *
7116278 GCTTAAAGCGTTTTTAACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTTTAGGA
66 GCTTAAAGCGTTTTTAACACTATTTACTCAGAAACGTCTACTCAAAATTATTTGTTCAGGA
* *
7116339 GCTACTGTAGTAAAAGCGCGTCCACGTGAGAGCTTCTTT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
7116378 AAATTAACAA
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 152 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (126 bp):
GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTATTGCTGACAAAGCATCCT
GCTTAAAGCGTTTTTAACACTATTTACTCAGAAACGTCTACTCAAAATTATTTGTTCAGGA
Found at i:7116544 original size:96 final size:92
Alignment explanation
Indices: 7116416--7116711 Score: 263
Period size: 94 Copynumber: 3.1 Consensus size: 92
7116406 CCTAAACCCC
* *
7116416 AAACCTTAATTTATTTAAGTTTTTACTTAAAAACCTTAAACACTAAGCCCTAATCTATTTTTTAA
1 AAACCCTAATTTATTTGA-TTTTT-CTTAAAAACCTTAAACACTAA-CCCTAATCTA-TTTTT-A
*
7116481 AAAAATTATAATTAATTTAATCAAGTAACACT
61 AAAATTTATAATTAATTTAATCAAGTAACACT
* * * *
7116513 TAACCCTAATTTATTTGATTTTTCCATAAAAACCCTT-AACTCTAAACCTTAATCTAATTTTTAA
1 AAACCCTAATTTATTTGATTTTT-CTTAAAAA-CCTTAAACACT-AACCCTAATCT-ATTTTTAA
* * * * * *
7116577 AATTTTTTAATTAAATTACTCAAGTACCCCT
62 AAATTTATAATTAATTTAATCAAGTAACACT
* * * * * *
7116608 AAACCCTAATTTAATTGATTTTTCTTAAAAA-ATAATAAACACGAAACCTAATCCAATTTTGAAA
1 AAACCCTAATTTATTTGATTTTTCTTAAAAACCT--TAAACACTAACCCTAAT-CTATTTTTAAA
* ** *
7116672 AATTTATAATTAATTTAATTAACAAACCCT
63 AATTTATAATTAATTTAATCAAGTAACACT
7116702 AAACCCTAAT
1 AAACCCTAAT
7116712 CCCTTATTTA
Statistics
Matches: 160, Mismatches: 32, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
92 1 0.01
94 55 0.34
95 52 0.32
96 30 0.19
97 22 0.14
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (92 bp):
AAACCCTAATTTATTTGATTTTTCTTAAAAACCTTAAACACTAACCCTAATCTATTTTTAAAAAT
TTATAATTAATTTAATCAAGTAACACT
Found at i:7116626 original size:95 final size:96
Alignment explanation
Indices: 7116411--7116711 Score: 265
Period size: 95 Copynumber: 3.2 Consensus size: 96
7116401 GTAACCCTAA
* * * * * *
7116411 ACCCC-AAACCTTAATTTATTTAAGTTTTTACTTAAAAACCTTAAACACTAAGCCCTAATCTATT
1 ACCCCTAAACCCTAATTTATTTGA-TTTTTCCATAAAAACCTTAAACACTAAACCCTAATCTAAT
*
7116475 TTTTAAAAAAATTATAATTAATTTAATCAAGT
65 TTTTAAAAAAATTATAATTAAATTAATCAAGT
* * * * *
7116507 AACACTTAACCCTAATTTATTTGATTTTTCCATAAAAACCCTT-AACTCTAAACCTTAATCTAAT
1 ACCCCTAAACCCTAATTTATTTGATTTTTCCATAAAAA-CCTTAAACACTAAACCCTAATCTAAT
** * *
7116571 TTTT-AAAATTTTTTAATTAAATTACTCAAGT
65 TTTTAAAAAAATTATAATTAAATTAATCAAGT
* * * * *
7116602 ACCCCTAAACCCTAATTTAATTGATTTTT-CTTAAAAA-ATAATAAACACGAAA-CCTAATCCAA
1 ACCCCTAAACCCTAATTTATTTGATTTTTCCATAAAAACCT--TAAACACTAAACCCTAATCTAA
* * * * **
7116664 -TTTTGAAAAATTTATAATTAATTTAATTAACA
64 TTTTTAAAAAAATTATAATTAAATTAATCAAGT
*
7116696 AACCCTAAACCCTAAT
1 ACCCCTAAACCCTAAT
7116712 CCCTTATTTA
Statistics
Matches: 165, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
92 1 0.01
93 4 0.02
94 51 0.31
95 54 0.33
96 36 0.22
97 19 0.12
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.38
Consensus pattern (96 bp):
ACCCCTAAACCCTAATTTATTTGATTTTTCCATAAAAACCTTAAACACTAAACCCTAATCTAATT
TTTAAAAAAATTATAATTAAATTAATCAAGT
Found at i:7119515 original size:15 final size:14
Alignment explanation
Indices: 7119494--7119529 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7119484 ATAATCCTTA
*
7119494 ATAATTATCTTAAT
1 ATAATTATCCTAAT
7119508 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
7119523 ATAATTA
1 ATAATTA
7119530 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:7120109 original size:20 final size:20
Alignment explanation
Indices: 7120086--7120124 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7120076 AAATTATATT
*
7120086 TTTTCTTTTCTATTTATTTA
1 TTTTCATTTCTATTTATTTA
*
7120106 TTTTGATTTCTATTTATTT
1 TTTTCATTTCTATTTATTT
7120125 TTTATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTCATTTCTATTTATTTA
Found at i:7121118 original size:5 final size:5
Alignment explanation
Indices: 7121108--7121185 Score: 54
Period size: 5 Copynumber: 15.4 Consensus size: 5
7121098 AGTAATAAAT
* * *
7121108 AATAA AATAA AATAA AGTAATA AATAA AGT-A AAGAA AATAA AATAA AAT--
1 AATAA AATAA AATAA AAT-A-A AATAA AATAA AATAA AATAA AATAA AATAA
* *
7121157 AATAA ATTAA TAATTA AATAAA AATAA AA
1 AATAA AATAA -AATAA AAT-AA AATAA AA
7121186 ATTGGGTTGC
Statistics
Matches: 56, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
3 3 0.05
4 2 0.04
5 39 0.70
6 9 0.16
7 3 0.05
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:7121170 original size:11 final size:10
Alignment explanation
Indices: 7121093--7121184 Score: 56
Period size: 11 Copynumber: 9.3 Consensus size: 10
7121083 ATTAATATCC
7121093 AAATAAGTAAT
1 AAATAA-TAAT
7121104 AAATAAT-A-
1 AAATAATAAT
7121112 AAATAA-AAT
1 AAATAATAAT
7121121 AAAGTAATAAAT
1 AAA-TAAT-AAT
7121133 AAAGTAA-AGA-
1 AAA-TAATA-AT
7121143 AAATAA-AAT
1 AAATAATAAT
7121152 -AA-AATAAT
1 AAATAATAAT
7121160 AAATTAATAATT
1 AAA-TAATAA-T
*
7121172 AAATAAAAAT
1 AAATAATAAT
7121182 AAA
1 AAA
7121185 AATTGGGTTG
Statistics
Matches: 68, Mismatches: 1, Indels: 25
0.72 0.01 0.27
Matches are distributed among these distances:
7 2 0.03
8 13 0.19
9 10 0.15
10 12 0.18
11 17 0.25
12 14 0.21
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (10 bp):
AAATAATAAT
Found at i:7125277 original size:58 final size:58
Alignment explanation
Indices: 7125201--7125319 Score: 184
Period size: 58 Copynumber: 2.1 Consensus size: 58
7125191 AGATTGCAAC
* *
7125201 TATTTCCTTAATGGATGCTCCAATGGATAAGGATGTCCTTTCTTCCTTTCCTCTTAGA
1 TATTTCCTCAATGGATGCTCCAATGGATAAGGATGTCCTTTCTTCCTTTCCTATTAGA
* * * *
7125259 TATTTCCTCAATGTATGCTCCAGTGGATGAGGATGTCCTTTTTTCCTTTCCTATTAGA
1 TATTTCCTCAATGGATGCTCCAATGGATAAGGATGTCCTTTCTTCCTTTCCTATTAGA
7125317 TAT
1 TAT
7125320 GACCCTAATC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (58 bp):
TATTTCCTCAATGGATGCTCCAATGGATAAGGATGTCCTTTCTTCCTTTCCTATTAGA
Found at i:7126631 original size:3 final size:3
Alignment explanation
Indices: 7126623--7126647 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7126613 TGATCTGAAC
7126623 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
7126648 TTCTTTGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7134202 original size:34 final size:34
Alignment explanation
Indices: 7134122--7134321 Score: 249
Period size: 35 Copynumber: 5.8 Consensus size: 34
7134112 AAATGATACA
*
7134122 TGAACATGAGAGATTCCCTGCAACAACATAATGCG
1 TGAACATGAGAGATTCCCTGCAAGAA-ATAATGCG
* *
7134157 TGAACATGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACATGAGAGATTCCCTGCAAGAAATAATGCG
* *
7134191 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACATGAGAGATTCCCTGCAA-GAAATAATGCG
* *
7134226 TGAACATGAGAGATTCCTTGCAAGAAA-AGATGTG
1 TGAACATGAGAGATTCCCTGCAAGAAATA-ATGCG
*
7134260 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACATGAGAGATTCCCTGCAA-GAAATAATGCG
* * * *
7134295 TGAACAGGAAATATTCCTTGCAAGAAA
1 TGAACATGAGAGATTCCCTGCAAGAAA
7134322 AGGCAAGTGA
Statistics
Matches: 142, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
33 1 0.01
34 60 0.42
35 80 0.56
36 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (34 bp):
TGAACATGAGAGATTCCCTGCAAGAAATAATGCG
Found at i:7134317 original size:35 final size:35
Alignment explanation
Indices: 7134122--7134300 Score: 263
Period size: 35 Copynumber: 5.2 Consensus size: 35
7134112 AAATGATACA
*
7134122 TGAACATGAGAGATTCCCTGCAACAACATAATGCG
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
* * *
7134157 TGAACATGAGAGATTCCCTGCAA-GAAATGATGTG
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
*
7134191 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
* * * *
7134226 TGAACATGAGAGATTCCTTGCAAGAAAA-GATGTG
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
7134260 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
7134295 TGAACA
1 TGAACA
7134301 GGAAATATTC
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
34 59 0.47
35 66 0.53
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.21
Consensus pattern (35 bp):
TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
Found at i:7134332 original size:69 final size:69
Alignment explanation
Indices: 7134122--7134323 Score: 341
Period size: 69 Copynumber: 2.9 Consensus size: 69
7134112 AAATGATACA
* * *
7134122 TGAACATGAGAGATTCCCTGCAACAACATAATGCGTGAACATGAGAGATTCCCTGCAAGAAATGA
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCGTGAACATGAGAGATTCCTTGCAAGAAAAGA
7134187 TGTG
66 TGTG
*
7134191 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACATGAGAGATTCCTTGCAAGAAAAGA
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCGTGAACATGAGAGATTCCTTGCAAGAAAAGA
7134256 TGTG
66 TGTG
* * *
7134260 TGAACATGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAATATTCCTTGCAAGAAAAG
1 TGAACATGAGAGATTCCCTGCAACAAAATAATGCGTGAACATGAGAGATTCCTTGCAAGAAAAG
7134324 GCAAGTGAAT
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 125 1.00
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (69 bp):
TGAACATGAGAGATTCCCTGCAACAAAATAATGCGTGAACATGAGAGATTCCTTGCAAGAAAAGA
TGTG
Found at i:7134597 original size:13 final size:13
Alignment explanation
Indices: 7134579--7134617 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
7134569 AGTTTTCAAA
7134579 TTTTCAAATTAAG
1 TTTTCAAATTAAG
7134592 TTTTCAAAACTTAAG
1 TTTTC-AAA-TTAAG
*
7134607 CTTTCAAATTA
1 TTTTCAAATTA
7134618 CAAATATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 8 0.35
14 6 0.26
15 9 0.39
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.44
Consensus pattern (13 bp):
TTTTCAAATTAAG
Found at i:7135565 original size:20 final size:19
Alignment explanation
Indices: 7135520--7135577 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
7135510 TTAGAAAAAA
*
7135520 TATAAAAAATAATAAATTT
1 TATAAAAATTAATAAATTT
* *
7135539 TAGAAAAATTATTAAATTT
1 TATAAAAATTAATAAATTT
7135558 TAATAAAAATTTAA-AAATTT
1 T-ATAAAAA-TTAATAAATTT
7135578 AAAATTTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
19 17 0.53
20 12 0.38
21 3 0.09
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
TATAAAAATTAATAAATTT
Found at i:7135703 original size:18 final size:19
Alignment explanation
Indices: 7135680--7135720 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7135670 TTAAATTTTG
7135680 GAAAC-TTAAAAATTTGGA
1 GAAACTTTAAAAATTTGGA
* *
7135698 GAAACTTTGAAACTTTGGA
1 GAAACTTTAAAAATTTGGA
7135717 GAAA
1 GAAA
7135721 TGAGTTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.27
Consensus pattern (19 bp):
GAAACTTTAAAAATTTGGA
Found at i:7138858 original size:21 final size:23
Alignment explanation
Indices: 7138816--7138858 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
7138806 TAATTAATCA
*
7138816 TAAACAGAAGCAAATCTCTTTTC
1 TAAACAGAAGCAAATATCTTTTC
*
7138839 TAAA-AGAAG-AAATATGTTTT
1 TAAACAGAAGCAAATATCTTTT
7138859 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (23 bp):
TAAACAGAAGCAAATATCTTTTC
Found at i:7142095 original size:14 final size:15
Alignment explanation
Indices: 7142065--7142096 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7142055 TCTCCAAATT
7142065 TTTAAGTTTTCAAAA
1 TTTAAGTTTTCAAAA
7142080 TTTAAGTTTT-AAAA
1 TTTAAGTTTTCAAAA
7142094 TTT
1 TTT
7142097 TTATTACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTAAGTTTTCAAAA
Found at i:7142680 original size:70 final size:70
Alignment explanation
Indices: 7142577--7142933 Score: 396
Period size: 70 Copynumber: 5.1 Consensus size: 70
7142567 TTAAACCAGT
** *
7142577 GAGCCTTAAGATTCCAACTGGGAG-TGTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGATATTGA
1 GAGCCTTAAGATTCCAGTTGGGAGCT-TAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGA
* *
7142641 ACCCGT
65 ACCTGC
* * * * * * * *
7142647 GAGCCTTAAGATTCCGGCTGGGAGCTTAGGCTCGAGCTAACTATTTTGAAGGTTGTGGTATTGAA
1 GAGCCTTAAGATTCCAGTTGGGAGCTTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGAA
7142712 CCTGC
66 CCTGC
* ** * *
7142717 GAGCCTTAAGATTCCAGTTGGGAGCGTAAGCTCGTACTAACTATTTTGGAGGATGCGGTATTGAA
1 GAGCCTTAAGATTCCAGTTGGGAGCTTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGAA
*
7142782 CCTAC
66 CCTGC
* * * * *
7142787 GAGCCTTGAGATTCCAGTTGGGAG-TGTACGCTCGCGCTAGCTGTTTTGGAGGCTGTGGTATGGA
1 GAGCCTTAAGATTCCAGTTGGGAGCT-TAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGA
*
7142851 ACCTAC
65 ACCTGC
* * *
7142857 GAGCCTGAAGATTCTAGTTGGGAGCGTACA-CTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGA
1 GAGCCTTAAGATTCCAGTTGGGAGCTTA-AGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGA
* *
7142921 ACATAC
65 ACCTGC
7142927 GAGCCTT
1 GAGCCTT
7142934 TATAATATCA
Statistics
Matches: 242, Mismatches: 41, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
70 241 1.00
71 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (70 bp):
GAGCCTTAAGATTCCAGTTGGGAGCTTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGAA
CCTGC
Found at i:7142739 original size:140 final size:140
Alignment explanation
Indices: 7142577--7142933 Score: 448
Period size: 140 Copynumber: 2.5 Consensus size: 140
7142567 TTAAACCAGT
** * *
7142577 GAGCCTTAAGATTCCAACTGGGAGTGTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGATATTGAA
1 GAGCCTTAAGATTCCAGTTGGGAGCGTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGAA
** * * *
7142642 CCCGTGAGCCTTAAGATTCCGGCTGGGAGCT-TAGGCTCGAGCTAACTATTTTGAAGGTTGTGGT
66 CCCACGAGCCTTAAGATTCCAGCTGGGAG-TGTACGCTCGAGCTAACTATTTTGAAGGCTGTGGT
* *
7142706 ATTGAACCTGC
130 ATGGAACCTAC
** * *
7142717 GAGCCTTAAGATTCCAGTTGGGAGCGTAAGCTCGTACTAACTATTTTGGAGGATGCGGTATTGAA
1 GAGCCTTAAGATTCCAGTTGGGAGCGTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGAA
* * * * * * *
7142782 CCTACGAGCCTTGAGATTCCAGTTGGGAGTGTACGCTCGCGCTAGCTGTTTTGGAGGCTGTGGTA
66 CCCACGAGCCTTAAGATTCCAGCTGGGAGTGTACGCTCGAGCTAACTATTTTGAAGGCTGTGGTA
7142847 TGGAACCTAC
131 TGGAACCTAC
* *
7142857 GAGCCTGAAGATTCTAGTTGGGAGCGTACA-CTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGA
1 GAGCCTTAAGATTCCAGTTGGGAGCGTA-AGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGA
**
7142921 ACATACGAGCCTT
65 ACCCACGAGCCTT
7142934 TATAATATCA
Statistics
Matches: 186, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
139 1 0.01
140 184 0.99
141 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (140 bp):
GAGCCTTAAGATTCCAGTTGGGAGCGTAAGCTCGCGCTAACTGTTTTGGAGGCTGCGGTATTGAA
CCCACGAGCCTTAAGATTCCAGCTGGGAGTGTACGCTCGAGCTAACTATTTTGAAGGCTGTGGTA
TGGAACCTAC
Found at i:7144948 original size:79 final size:79
Alignment explanation
Indices: 7144844--7145001 Score: 280
Period size: 79 Copynumber: 2.0 Consensus size: 79
7144834 TAGTATACCA
* * *
7144844 GCATTTTTTAAAATCATAAATAAATAAACATTTCAAAGCATATAATTCAATAAGTCTACTGCAAT
1 GCATTTTTTAAAATAAAAAATAAATAAACATTTCAAAGCATACAATTCAATAAGTCTACTGCAAT
*
7144909 ACACGTGAAAAGTT
66 ACACATGAAAAGTT
7144923 GCATTTTTTAAAATAAAAAATAAATAAACATTTCAAAGCATACAATTCAATAAGTCTACTGCAAT
1 GCATTTTTTAAAATAAAAAATAAATAAACATTTCAAAGCATACAATTCAATAAGTCTACTGCAAT
7144988 ACACATGAAAAGTT
66 ACACATGAAAAGTT
7145002 AAATCATCAT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.30
Consensus pattern (79 bp):
GCATTTTTTAAAATAAAAAATAAATAAACATTTCAAAGCATACAATTCAATAAGTCTACTGCAAT
ACACATGAAAAGTT
Found at i:7158929 original size:13 final size:13
Alignment explanation
Indices: 7158913--7158938 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7158903 ATATTATAAA
7158913 ACATTTAAAATAT
1 ACATTTAAAATAT
7158926 ACATTTAAAATAT
1 ACATTTAAAATAT
7158939 TATAAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:7165535 original size:51 final size:51
Alignment explanation
Indices: 7165479--7165581 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
7165469 TTAACAGGAC
7165479 TAATTAAGATGATCATGTTGTTGGAAAATATGGACATTACATATATAATAA
1 TAATTAAGATGATCATGTTGTTGGAAAATATGGACATTACATATATAATAA
7165530 TAATTAAGATGATCATGTTGTTGGAAAATATGGACATTACATATATAATAA
1 TAATTAAGATGATCATGTTGTTGGAAAATATGGACATTACATATATAATAA
7165581 T
1 T
7165582 GGTAATTACA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.36
Consensus pattern (51 bp):
TAATTAAGATGATCATGTTGTTGGAAAATATGGACATTACATATATAATAA
Found at i:7168315 original size:18 final size:18
Alignment explanation
Indices: 7168294--7168354 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
7168284 ATTCATATGT
*
7168294 ATTTTATAGTATATATAC
1 ATTTTATAATATATATAC
* *
7168312 ATTTCATAATATTTATAC
1 ATTTTATAATATATATAC
*
7168330 ATTTTCTATAATATACATAC
1 A-TTT-TATAATATATATAC
7168350 ATTTT
1 ATTTT
7168355 TTATATCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 17 0.49
19 6 0.17
20 12 0.34
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTTTATAATATATATAC
Found at i:7168340 original size:20 final size:20
Alignment explanation
Indices: 7168298--7168359 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
7168288 ATATGTATTT
*
7168298 TATAGTATATATACA-TTTC
1 TATAATATATATACATTTTC
*
7168317 -ATAATATTTATACATTTTC
1 TATAATATATATACATTTTC
* *
7168336 TATAATATACATACATTTTT
1 TATAATATATATACATTTTC
7168356 TATA
1 TATA
7168360 TCTTTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.33
19 4 0.11
20 20 0.56
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.50
Consensus pattern (20 bp):
TATAATATATATACATTTTC
Found at i:7170268 original size:13 final size:13
Alignment explanation
Indices: 7170250--7170276 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7170240 AAAGAGATTT
7170250 GTTTTCTAGTGAA
1 GTTTTCTAGTGAA
7170263 GTTTTCTAGTGAA
1 GTTTTCTAGTGAA
7170276 G
1 G
7170277 AATTGAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.44
Consensus pattern (13 bp):
GTTTTCTAGTGAA
Found at i:7173156 original size:7 final size:6
Alignment explanation
Indices: 7173135--7173166 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
7173125 AAAAATGATG
7173135 AAATGA AAATGA AAATTGA AAATGA AAATGA A
1 AAATGA AAATGA AAA-TGA AAATGA AAATGA A
7173167 GAACGGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.19
Consensus pattern (6 bp):
AAATGA
Done.