Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 26 of 126
Found at i:7422777 original size:3 final size:3
Alignment explanation
Indices: 7422758--7422799 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
7422748 GCATGTATGT
* *
7422758 ATA A-A ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7422800 AAATCATAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7430677 original size:3 final size:3
Alignment explanation
Indices: 7430669--7430711 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
7430659 TAAGAAAAGG
7430669 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7430712 AAAAGCACAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7435674 original size:104 final size:105
Alignment explanation
Indices: 7435492--7435703 Score: 345
Period size: 104 Copynumber: 2.0 Consensus size: 105
7435482 TAATAATACA
* *
7435492 TTTATGGGTTGTTTCAAATATGTCTCATACCTCTTTAATAATAGTGCACTTCGAGATCCTCTTAA
1 TTTATGGGCTATTTCAAATATGTCTCATACCTCTTTAAT-ATAGTGCACTTCGAGATCCTCTTAA
*
7435557 ATTCTTGTTGATCAATACCACAAAAGATAACATAAAATGCT
65 ATTCTTGTTGATCAATACCACAAAAAATAACATAAAATGCT
* *
7435598 TTTATGGGCTATTTCAAATATGTCTCATACCTCTTTAAT-TAGTGCACTTCGATATCCTCTTCAA
1 TTTATGGGCTATTTCAAATATGTCTCATACCTCTTTAATATAGTGCACTTCGAGATCCTCTTAAA
* *
7435662 TTCTTGTTGATCAATGCCACAAAAAATATCATAAAATGCT
66 TTCTTGTTGATCAATACCACAAAAAATAACATAAAATGCT
7435702 TT
1 TT
7435704 AAAGTTGGCA
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
104 62 0.63
106 37 0.37
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (105 bp):
TTTATGGGCTATTTCAAATATGTCTCATACCTCTTTAATATAGTGCACTTCGAGATCCTCTTAAA
TTCTTGTTGATCAATACCACAAAAAATAACATAAAATGCT
Found at i:7436038 original size:25 final size:25
Alignment explanation
Indices: 7436010--7436058 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
7436000 TTTGTTCCTC
*
7436010 TGCTTATTCTTTGTTCCTCTGCTGG
1 TGCTGATTCTTTGTTCCTCTGCTGG
* *
7436035 TGCTGGTTCTTTGTTCTTCTGCTG
1 TGCTGATTCTTTGTTCCTCTGCTG
7436059 CTTCTTTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.02, C:0.22, G:0.22, T:0.53
Consensus pattern (25 bp):
TGCTGATTCTTTGTTCCTCTGCTGG
Found at i:7437021 original size:67 final size:66
Alignment explanation
Indices: 7436893--7437021 Score: 197
Period size: 67 Copynumber: 1.9 Consensus size: 66
7436883 AAAGGATAAG
*
7436893 GAAAATTTTCAGAAACATCTGGAAAACAAATTGAGTACTAATTGAAAAAGCTAAATGGAACACAT
1 GAAAATTTTCAGAAACATCTGGAAAACAAATTGAGTACTAATTG-AAAAGCTAAATAGAACACAT
7436958 TA
65 TA
* *
7436960 GAAAATTTTCAGAAACATTTGGAAAACAAATTGAGTACTAATTG-CAAGCTAATAATAGAACA
1 GAAAATTTTCAGAAACATCTGGAAAACAAATTGAGTACTAATTGAAAAGCT-A-AATAGAACA
7437022 TTTAAATGAT
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 5 0.09
66 1 0.02
67 51 0.89
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.25
Consensus pattern (66 bp):
GAAAATTTTCAGAAACATCTGGAAAACAAATTGAGTACTAATTGAAAAGCTAAATAGAACACATT
A
Found at i:7439410 original size:72 final size:72
Alignment explanation
Indices: 7439256--7439428 Score: 233
Period size: 72 Copynumber: 2.4 Consensus size: 72
7439246 AACAACAATG
* * * * *
7439256 CTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTA
1 CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
7439321 TTTATGT
66 TTTATGT
* * *
7439328 GT-AATCTAGTTTTATTAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
1 CTAAAT-TAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
*
7439392 ATTT-TTT
65 ATTTATGT
7439399 ACTAAATTAGTTTTATCAATAGTTGTTTAT
1 -CTAAATTAGTTTTATCAATAGTTGTTTAT
7439429 ATGTGATTTT
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
71 4 0.05
72 79 0.92
73 3 0.03
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.54
Consensus pattern (72 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTATGT
Found at i:7441676 original size:8 final size:8
Alignment explanation
Indices: 7441665--7441692 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7441655 TTTAATTATT
7441665 ATATTTAA
1 ATATTTAA
7441673 ATATTTAA
1 ATATTTAA
7441681 ATATTTAA
1 ATATTTAA
7441689 ATAT
1 ATAT
7441693 AGTTTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTTAA
Found at i:7441970 original size:13 final size:13
Alignment explanation
Indices: 7441952--7441984 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
7441942 CAAAATTTTC
7441952 AAAAGCATTTCTT
1 AAAAGCATTTCTT
7441965 AAAAGCATTTCTT
1 AAAAGCATTTCTT
7441978 AAAAGCA
1 AAAAGCA
7441985 CTTTTCCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.30
Consensus pattern (13 bp):
AAAAGCATTTCTT
Found at i:7451663 original size:54 final size:54
Alignment explanation
Indices: 7451599--7451773 Score: 314
Period size: 54 Copynumber: 3.2 Consensus size: 54
7451589 GTAAAGACCA
* **
7451599 AAATTTCATGCATAATTAATTAATATCCATATTTCAATATCCTATATTCAAATT
1 AAATCTCATGCATAATTAATTAATATTTATATTTCAATATCCTATATTCAAATT
7451653 AAATCTCATGCATAATTAATTAATATTTATATTTCAATATCCTATATTCAAATT
1 AAATCTCATGCATAATTAATTAATATTTATATTTCAATATCCTATATTCAAATT
7451707 AAATCTCATGCATAATTAATTAATATTTATATTTCAATATCCTATATTCAAATT
1 AAATCTCATGCATAATTAATTAATATTTATATTTCAATATCCTATATTCAAATT
*
7451761 AAATGTCATGCAT
1 AAATCTCATGCAT
7451774 GCAATATAAA
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.43
Consensus pattern (54 bp):
AAATCTCATGCATAATTAATTAATATTTATATTTCAATATCCTATATTCAAATT
Found at i:7452491 original size:38 final size:38
Alignment explanation
Indices: 7452435--7452548 Score: 138
Period size: 38 Copynumber: 3.0 Consensus size: 38
7452425 GTAAATATGT
* * *
7452435 TTAACATGTATTCGGTTCAACAATAACAATAGACATTC
1 TTAACATGTATTCAGTTCAACAGTAACAATAGACATGC
** * *
7452473 TTAACATGTATTCAGTTCAGTAGTAATAGTAGACATGC
1 TTAACATGTATTCAGTTCAACAGTAACAATAGACATGC
* * *
7452511 TTAACATGTATTTAATTCAACAGTAACAATAGGCATGC
1 TTAACATGTATTCAGTTCAACAGTAACAATAGACATGC
7452549 AATCATCAAT
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (38 bp):
TTAACATGTATTCAGTTCAACAGTAACAATAGACATGC
Found at i:7454679 original size:19 final size:19
Alignment explanation
Indices: 7454634--7454685 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
7454624 ATTTCACAAT
7454634 AAATCTCATATTTATTCATC
1 AAAT-TCATATTTATTCATC
**
7454654 ATTTTCATATTTATCTCA-C
1 AAATTCATATTTAT-TCATC
7454673 AAATTCATTATTT
1 AAATTCA-TATTT
7454686 CTACATCTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATTCATATTTATTCATC
Found at i:7455718 original size:18 final size:18
Alignment explanation
Indices: 7455674--7455712 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7455664 TTTTATAAAT
* *
7455674 TTATAAAAATATTAAAAA
1 TTATCAAAATACTAAAAA
*
7455692 TTTTCAAAATACTAAAAA
1 TTATCAAAATACTAAAAA
7455710 TTA
1 TTA
7455713 ATAAAAATAA
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
TTATCAAAATACTAAAAA
Found at i:7457089 original size:19 final size:20
Alignment explanation
Indices: 7457055--7457093 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7457045 GAACTTTATT
7457055 TAATATTTTATAAATTTTAA
1 TAATATTTTATAAATTTTAA
*
7457075 TAATGTTTT-TAAATTTTAA
1 TAATATTTTATAAATTTTAA
7457094 AAGAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TAATATTTTATAAATTTTAA
Found at i:7464757 original size:27 final size:27
Alignment explanation
Indices: 7464727--7464779 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7464717 ATTTTATAAT
*
7464727 TTTTTGTATGATTTTTATAAAATTTTA
1 TTTTTGTACGATTTTTATAAAATTTTA
* *
7464754 TTTTTTTACGATTTTTATAATATTTT
1 TTTTTGTACGATTTTTATAAAATTTT
7464780 TATAATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (27 bp):
TTTTTGTACGATTTTTATAAAATTTTA
Found at i:7464778 original size:11 final size:11
Alignment explanation
Indices: 7464764--7464789 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7464754 TTTTTTTACG
7464764 ATTTTTATAAT
1 ATTTTTATAAT
7464775 ATTTTTATAAT
1 ATTTTTATAAT
7464786 ATTT
1 ATTT
7464790 AATATGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTTTATAAT
Found at i:7464815 original size:26 final size:26
Alignment explanation
Indices: 7464773--7464833 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
7464763 GATTTTTATA
* *
7464773 ATATTTTTATAATATTTAAT-ATGTT
1 ATATTTTTATAAAATTTAATAATATT
7464798 ATATTTTTATTAAAATTTAATAATATT
1 ATATTTTTA-TAAAATTTAATAATATT
*
7464825 TTATTTTTA
1 ATATTTTTA
7464834 ATTTTTTGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 9 0.29
26 10 0.32
27 12 0.39
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
ATATTTTTATAAAATTTAATAATATT
Found at i:7475464 original size:27 final size:27
Alignment explanation
Indices: 7475426--7475534 Score: 155
Period size: 27 Copynumber: 4.0 Consensus size: 27
7475416 ACTCGAGACA
7475426 GGTCGCGCCTGTCAGATAGGCGCAACT
1 GGTCGCGCCTGTCAGATAGGCGCAACT
7475453 GGTCGCGCCTGTCAGATAGGCGCAACT
1 GGTCGCGCCTGTCAGATAGGCGCAACT
* *
7475480 GGTCGCGCCTGTCAGGTAAGCGCAACT
1 GGTCGCGCCTGTCAGATAGGCGCAACT
* * * * *
7475507 AGTTGCGCCTGACAGGTAGGCGCCACT
1 GGTCGCGCCTGTCAGATAGGCGCAACT
7475534 G
1 G
7475535 CCTACCCCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.18
Consensus pattern (27 bp):
GGTCGCGCCTGTCAGATAGGCGCAACT
Found at i:7475677 original size:13 final size:12
Alignment explanation
Indices: 7475655--7475712 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 12
7475645 TTCAAGCACC
7475655 GAAAGAGAGAAA
1 GAAAGAGAGAAA
7475667 GAAAGGAGAGAAA
1 GAAA-GAGAGAAA
* *
7475680 GGAGAAGAAAAAAA
1 -GA-AAGAGAGAAA
*
7475694 GAAAAAGAAGAAA
1 GAAAGAG-AGAAA
7475707 GAAAGA
1 GAAAGA
7475713 AAAAAGGTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
12 7 0.19
13 19 0.53
14 8 0.22
15 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (12 bp):
GAAAGAGAGAAA
Found at i:7475697 original size:8 final size:8
Alignment explanation
Indices: 7475684--7475717 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
7475674 GAGAAAGGAG
7475684 AAGAAAAA
1 AAGAAAAA
7475692 AAGAAAAA
1 AAGAAAAA
*
7475700 GAAGAAAGA
1 -AAGAAAAA
7475709 AAGAAAAA
1 AAGAAAAA
7475717 A
1 A
7475718 GGTAATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (8 bp):
AAGAAAAA
Found at i:7475704 original size:17 final size:17
Alignment explanation
Indices: 7475682--7475716 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7475672 GAGAGAAAGG
7475682 AGAAGAAAAAAAGAAAA
1 AGAAGAAAAAAAGAAAA
*
7475699 AGAAGAAAGAAAGAAAA
1 AGAAGAAAAAAAGAAAA
7475716 A
1 A
7475717 AGGTAATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
AGAAGAAAAAAAGAAAA
Found at i:7475973 original size:60 final size:60
Alignment explanation
Indices: 7475871--7475992 Score: 217
Period size: 60 Copynumber: 2.0 Consensus size: 60
7475861 TGTAATTTTT
* *
7475871 TTGTTTTTATAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTG
1 TTGTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTG
*
7475931 TTGTGTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTG
1 TTGTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTG
7475991 TT
1 TT
7475993 ATGCTTAGTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (60 bp):
TTGTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTG
Found at i:7476305 original size:103 final size:101
Alignment explanation
Indices: 7476187--7476475 Score: 422
Period size: 103 Copynumber: 2.8 Consensus size: 101
7476177 TTATAGTTAT
* * * *
7476187 TTATTTTGTTAATAATTAATGGGATTATG-T-TACAAATTGTTAGTGTTTAGTATAGGGTTTTGT
1 TTATTTTGTTAATAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGT-TAGTGTTTTGT
7476250 GATTTTTTAGTAATGTAATTTTTAAAAAAAAATTTTATAG
63 GATTTTTTAGTAATGTAATTTTTAAAAAAAAA-TTTATAG
* *
7476290 TTATTTTGTTAATAATTTATGAGTAGGTTATATAAATTGTTAGGGTTTAGTTATGTGTTTTGTGA
1 TTATTTTGTTAATAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTA-GTGTTTTGTGA
*
7476355 TTTTTTAGTAATGTATTTTTTAAAAAAAAATTTATAG
65 TTTTTTAGTAATGTAATTTTTAAAAAAAAATTTATAG
*
7476392 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
1 TTATTTTGTTAATAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAG-TTAGTGTTTTGTGA
*
7476457 TTTTTT-TTAATGTAATTTT
65 TTTTTTAGTAATGTAATTTT
7476476 ATTTGATTTT
Statistics
Matches: 170, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
101 16 0.09
102 74 0.44
103 80 0.47
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (101 bp):
TTATTTTGTTAATAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTAGTGTTTTGTGAT
TTTTTAGTAATGTAATTTTTAAAAAAAAATTTATAG
Found at i:7476425 original size:102 final size:104
Alignment explanation
Indices: 7476220--7476475 Score: 423
Period size: 102 Copynumber: 2.5 Consensus size: 104
7476210 ATTATGTTAC
*
7476220 AAATTGTTAGTGTTTAG-TATAGGGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAAATT
1 AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAAATT
7476284 TTATAGTTATTTTGTTAATAATTTATGAGTAGGTTATAT
66 TTATAGTTATTTTGTTAATAATTTATGAGTAGGTTATAT
* *
7476323 AAATTGTTAGGGTTTAGTTAT-GTGTTTTGTGATTTTTTAGTAATGTATTTTTTAAAAAAAAA-T
1 AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAAATT
* *
7476386 TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAT
66 TTATAGTTATTTTGTTAATAATTTATGAGTAGGTTATAT
*
7476425 AAATTGTTAGTGTTTAGTT-TAGTGTTTTGTGATTTTTT-TTAATGTAATTTT
1 AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGTAATTTT
7476476 ATTTGATTTT
Statistics
Matches: 143, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
101 12 0.08
102 73 0.51
103 55 0.38
104 3 0.02
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.54
Consensus pattern (104 bp):
AAATTGTTAGTGTTTAGTTATAGTGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAAATT
TTATAGTTATTTTGTTAATAATTTATGAGTAGGTTATAT
Found at i:7476516 original size:17 final size:18
Alignment explanation
Indices: 7476481--7476516 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7476471 ATTTTATTTG
*
7476481 ATTTTTATTTATTTGATA
1 ATTTTTATTGATTTGATA
7476499 ATTTTTATTGATTT-ATA
1 ATTTTTATTGATTTGATA
7476516 A
1 A
7476517 AAATGTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (18 bp):
ATTTTTATTGATTTGATA
Found at i:7477616 original size:33 final size:34
Alignment explanation
Indices: 7477565--7477693 Score: 92
Period size: 33 Copynumber: 3.9 Consensus size: 34
7477555 GATATCTTCA
* *
7477565 GCCCACTA-CCACCCCAGTACTCCAGC-CATCCCG
1 GCCCA-TATCCACCTCAGTACTCCAGCTCATCCAG
* *
7477598 GCTCATATCCACCTCAGTACTCC-GCTCATTCAG
1 GCCCATATCCACCTCAGTACTCCAGCTCATCCAG
* * *
7477631 GCCCATATCCAACGTC-GTACTCCA-CTCCTCCTG
1 GCCCATATCC-ACCTCAGTACTCCAGCTCATCCAG
** *
7477664 GCCTGTATCCACCATC-GTACTTCA-CTCATC
1 GCCCATATCCACC-TCAGTACTCCAGCTCATC
7477694 TCGGCCCGTA
Statistics
Matches: 77, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
32 6 0.08
33 67 0.87
34 4 0.05
ACGTcount: A:0.20, C:0.45, G:0.12, T:0.23
Consensus pattern (34 bp):
GCCCATATCCACCTCAGTACTCCAGCTCATCCAG
Found at i:7477673 original size:66 final size:66
Alignment explanation
Indices: 7477603--7477726 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 66
7477593 TCCCGGCTCA
*
7477603 TATCCACC-TCAGTACTCCGCTCAT-TCAGGCCCATATCCAAC-GTCGTACTCCACTCCTCCTGG
1 TATCCACCATC-GTACTCCACTCATCTC-GGCCCATAT-CAACTGTCGTACTCCACTCCTCCTGG
7477665 CCTG
63 CCTG
* * *
7477669 TATCCACCATCGTACTTCACTCATCTCGGCCCGTATCTACTGTCGTACTCCACTCCTC
1 TATCCACCATCGTACTCCACTCATCTCGGCCCATATCAACTGTCGTACTCCACTCCTC
7477727 TCAGCTCAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
65 3 0.06
66 44 0.86
67 4 0.08
ACGTcount: A:0.18, C:0.42, G:0.12, T:0.28
Consensus pattern (66 bp):
TATCCACCATCGTACTCCACTCATCTCGGCCCATATCAACTGTCGTACTCCACTCCTCCTGGCCT
G
Found at i:7477705 original size:33 final size:34
Alignment explanation
Indices: 7477603--7477730 Score: 120
Period size: 33 Copynumber: 3.9 Consensus size: 34
7477593 TCCCGGCTCA
* *
7477603 TATCCACC-TCAGTACTCCGCTCAT-TCAGGCCCA
1 TATCCACCGTC-GTACTCCACTCATCTCAGGCCCG
* * * *
7477636 TATCCAACGTCGTACTCCACTCCTC-CTGGCCTG
1 TATCCACCGTCGTACTCCACTCATCTCAGGCCCG
* *
7477669 TATCCACCATCGTACTTCACTCATCTC-GGCCCG
1 TATCCACCGTCGTACTCCACTCATCTCAGGCCCG
* * *
7477702 TATCTACTGTCGTACTCCACTCCTCTCAG
1 TATCCACCGTCGTACTCCACTCATCTCAG
7477731 CTCAAGTTTA
Statistics
Matches: 75, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
33 71 0.95
34 4 0.05
ACGTcount: A:0.18, C:0.41, G:0.12, T:0.28
Consensus pattern (34 bp):
TATCCACCGTCGTACTCCACTCATCTCAGGCCCG
Found at i:7479740 original size:13 final size:13
Alignment explanation
Indices: 7479722--7479746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7479712 TAATGGTATA
7479722 TTGAATCCATGAC
1 TTGAATCCATGAC
7479735 TTGAATCCATGA
1 TTGAATCCATGA
7479747 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:7480327 original size:27 final size:26
Alignment explanation
Indices: 7480296--7480473 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
7480286 TAAATTGTAC
7480296 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
7480323 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
7480349 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
7480377 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
7480405 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
7480432 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
7480459 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7480474 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:7480412 original size:82 final size:81
Alignment explanation
Indices: 7480297--7480452 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7480287 AAATTGTACA
* *
7480297 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7480361 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
7480378 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7480443 TGCGAGTTGA
65 TGCGAATTGA
7480453 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7480464 original size:82 final size:81
Alignment explanation
Indices: 7480293--7480473 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
7480283 GATTAAATTG
* *
7480293 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7480358 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
7480374 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7480438 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7480456 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7480474 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7480484 original size:27 final size:27
Alignment explanation
Indices: 7480378--7480484 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
7480368 TGACCATGCG
* * * *
7480378 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
7480406 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
7480433 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
7480460 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
7480485 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:7488517 original size:27 final size:27
Alignment explanation
Indices: 7488486--7488663 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7488476 TAAATTGTAC
7488486 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7488513 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7488539 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7488567 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7488595 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7488622 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7488649 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7488664 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7488600 original size:82 final size:81
Alignment explanation
Indices: 7488487--7488642 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7488477 AAATTGTACA
* *
7488487 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7488551 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7488568 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7488633 TGCGAGTTGA
65 TGCGAATTGA
7488643 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7488654 original size:82 final size:81
Alignment explanation
Indices: 7488483--7488663 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7488473 GATTAAATTG
* *
7488483 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7488548 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7488564 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7488628 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7488646 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7488664 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7492490 original size:27 final size:27
Alignment explanation
Indices: 7492459--7492543 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
7492449 GAAAATTAAG
*
7492459 CACCAGTCACGCCTGTTAGATAAGCTC
1 CACCAGTCACGCCTGTCAGATAAGCTC
*
7492486 CACCAGTCGCGCCTGTCAGATAAGCTC
1 CACCAGTCACGCCTGTCAGATAAGCTC
* * * *
7492513 CACTAGTCACGCTTGTCAGATAGGCGC
1 CACCAGTCACGCCTGTCAGATAAGCTC
7492540 CACC
1 CACC
7492544 TACCCCATAC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.24, C:0.35, G:0.21, T:0.20
Consensus pattern (27 bp):
CACCAGTCACGCCTGTCAGATAAGCTC
Found at i:7495293 original size:11 final size:11
Alignment explanation
Indices: 7495277--7495310 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7495267 TAATATTCTC
7495277 TCAAATTCCTA
1 TCAAATTCCTA
*
7495288 TCAAATTCCTC
1 TCAAATTCCTA
*
7495299 TCAAATTTCTA
1 TCAAATTCCTA
7495310 T
1 T
7495311 TTAAAAGAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.41
Consensus pattern (11 bp):
TCAAATTCCTA
Found at i:7497174 original size:18 final size:18
Alignment explanation
Indices: 7497138--7497180 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
7497128 TGCCAAGTGC
*
7497138 GTATCCTAGCCATTTTAT
1 GTATCCTAGCCATTATAT
* *
7497156 GTATCCTATCCCTTATAT
1 GTATCCTAGCCATTATAT
*
7497174 GTTTCCT
1 GTATCCT
7497181 TTTTCTAGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAGCCATTATAT
Found at i:7497647 original size:49 final size:49
Alignment explanation
Indices: 7497580--7497846 Score: 473
Period size: 49 Copynumber: 5.5 Consensus size: 49
7497570 GTTTATATTA
* *
7497580 ATGTAATACAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
7497629 ATGTAATAAAATATAAAATAGTTTATTTTGAA-ATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
7497677 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
7497726 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
7497775 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
7497824 ATTTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
7497847 AATATTCTTA
Statistics
Matches: 209, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 46 0.22
49 163 0.78
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
Found at i:7501301 original size:125 final size:124
Alignment explanation
Indices: 7501039--7501450 Score: 572
Period size: 125 Copynumber: 3.3 Consensus size: 124
7501029 CCCAATCATG
* * * *
7501039 CTACTGTAGCAAAAACACGTCCACGTGGGAGCGATTTCAGAAAGTCTTCTGATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGTAGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTAC
* * *
7501104 TTGAAGCGTTTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTTCAGGAT
66 TTGAAGCTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * *
7501163 CTATTGTAGCAAAAGCGCGTCCACGTAGGAGCAATTTTAGAAATTCTTCTGATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGTAGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTAC
* * * *
7501228 TTCAAGCATTTTTTATACTATTTGCTCAGAAACGTTAAGTCGAAATTATTTTTTCAAGAC
66 TTGAAGC-TTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * * *
7501288 CTACTGTAGCAAAAGCTCTTCCACATAGGAGTGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTAGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTAC
* * *
7501353 TAGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTATTCAGGAC
66 TTGAAGC-TTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * *
7501413 CTACTGTAGCAACAGCGCGTCCACATGGGAGCGGTTTC
1 CTACTGTAGCAAAAGCGCGTCCACGTAGGAGCGATTTC
7501451 CTTAATAAAT
Statistics
Matches: 251, Mismatches: 36, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
124 64 0.25
125 187 0.75
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGTAGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTAC
TTGAAGCTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:7502740 original size:5 final size:5
Alignment explanation
Indices: 7502730--7502762 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
7502720 AAAATTCATA
7502730 AAAAT AAAAT AAAAT AAAAT AAAAT AAATAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AA
7502763 CTATTTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:7504983 original size:41 final size:41
Alignment explanation
Indices: 7504886--7505007 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 41
7504876 GACAGTCGAC
* *
7504886 GCCACACGGCTAGTGACATGAGCGTGTGCCCAGGCCGTGTGA
1 GCCACAAGGCAAG-GACATGAGCGTGTGCCCAGGCCGTGTGA
* * * *
7504928 GCCATAGGGCAAGGACATGGGCGTGTTCCCA-GCCGTGTGA
1 GCCACAAGGCAAGGACATGAGCGTGTGCCCAGGCCGTGTGA
* * * *
7504968 GCCACACAGGTAAGGACATGAGCATGTGTCCAGACCGTGT
1 GCCACA-AGGCAAGGACATGAGCGTGTGCCCAGGCCGTGT
7505008 AACTCACTGT
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
40 14 0.22
41 35 0.54
42 16 0.25
ACGTcount: A:0.22, C:0.26, G:0.34, T:0.17
Consensus pattern (41 bp):
GCCACAAGGCAAGGACATGAGCGTGTGCCCAGGCCGTGTGA
Found at i:7505172 original size:146 final size:143
Alignment explanation
Indices: 7504900--7505259 Score: 398
Period size: 146 Copynumber: 2.5 Consensus size: 143
7504890 CACGGCTAGT
* * * *
7504900 GACATGAGCGTGTGCCCAGGCCGTGTGAGCCATA-GGGCAAGGACATGGGCGTGTTCCCAGCCGT
1 GACATGGGCGTGTG-CCAGG-CGTGTGAGCCACACGGGCAAGGACATAGGCGTGTGCCCAGCCGT
* * * * * * *
7504964 GTGAGCCACACAGGTAAGGACATGAGCATGTGTCCAGACCGTGTAACTCACTGTTTATGCTTTAG
64 ATAAGCCACACAGGCAAGGACATGAACATGTGTCCAGACCGGGTAACTCACTATTTACGCTTTAG
* *
7505029 AATCATACGACCAAG
129 AACCACACGACCAAG
** *
7505044 GACATGGGCGTGTGCTCAGGTCGTGTGAGCCACACGGGCAAGGACATAGTTGTGTGCCCAGACTG
1 GACATGGGCGTGTGC-CAGG-CGTGTGAGCCACACGGGCAAGGACATAGGCGTGTGCCCAG-CCG
** *
7505109 TATAAGCCACATGGGCAAGGACATGAACATGTGTCCAGGCCGGGTAACTCACTATTTACGCTTTA
63 TATAAGCCACACAGGCAAGGACATGAACATGTGTCCAGACCGGGTAACTCACTATTTACGCTTTA
* ** *
7505174 GAACCACATGGTCAGG
128 GAACCACACGACCAAG
* * * *
7505190 GACATGGGTGTGTGCCTAGGCTGTGTGTGCCACACGGGCAAGGACATGGGCGTGTGTCCAGGCCG
1 GACATGGGCGTGTGCC-AGGC-GTGTGAGCCACACGGGCAAGGACATAGGCGTGTGCCCA-GCCG
7505255 TATAA
63 TATAA
7505260 CTCACTGTTT
Statistics
Matches: 179, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
143 1 0.01
144 29 0.16
145 24 0.13
146 124 0.69
147 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.21
Consensus pattern (143 bp):
GACATGGGCGTGTGCCAGGCGTGTGAGCCACACGGGCAAGGACATAGGCGTGTGCCCAGCCGTAT
AAGCCACACAGGCAAGGACATGAACATGTGTCCAGACCGGGTAACTCACTATTTACGCTTTAGAA
CCACACGACCAAG
Found at i:7505253 original size:104 final size:104
Alignment explanation
Indices: 7505095--7505357 Score: 303
Period size: 104 Copynumber: 2.5 Consensus size: 104
7505085 GGACATAGTT
* * * * * ** * *
7505095 GTGTGCCCAGACTGTATAAGCCACATGGGCAAGGACATGAACATGTGTCCAGGCCGGGTAACTCA
1 GTGTGCCTAGGCTGTGTGAGCCACACGGGCAAGGACATGGGCGTGTGTCCAGGCCGGATAACTCA
* * * * *
7505160 CTATTTACGCTTTAGAACCACA-TGGTCAGGGACATGGGT
66 CTATTTACACTTTAAAACCACACAGCT-AGGGACATGGGG
* *
7505199 GTGTGCCTAGGCTGTGTGTGCCACACGGGCAAGGACATGGGCGTGTGTCCAGGCCGTATAACTCA
1 GTGTGCCTAGGCTGTGTGAGCCACACGGGCAAGGACATGGGCGTGTGTCCAGGCCGGATAACTCA
*
7505264 CTGTTTACACTTTAAAACCACACAGCTAGGGACATGGGG
66 CTATTTACACTTTAAAACCACACAGCTAGGGACATGGGG
* * * * * *
7505303 GTGTGCTTAGGCTGTGTGAGACACACAGGTAAGAACATGGGCGTGTGACCAGGCC
1 GTGTGCCTAGGCTGTGTGAGCCACACGGGCAAGGACATGGGCGTGTGTCCAGGCC
7505358 ATGTTGATAA
Statistics
Matches: 134, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
104 132 0.99
105 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.22
Consensus pattern (104 bp):
GTGTGCCTAGGCTGTGTGAGCCACACGGGCAAGGACATGGGCGTGTGTCCAGGCCGGATAACTCA
CTATTTACACTTTAAAACCACACAGCTAGGGACATGGGG
Found at i:7505577 original size:20 final size:20
Alignment explanation
Indices: 7505552--7505591 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7505542 TACATGCTTC
* *
7505552 GTTTTGCTCTGTTCTGTTCT
1 GTTTTGCTCCGTTCCGTTCT
7505572 GTTTTGCTCCGTTCCGTTCT
1 GTTTTGCTCCGTTCCGTTCT
7505592 ATTCTGTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.25, G:0.20, T:0.55
Consensus pattern (20 bp):
GTTTTGCTCCGTTCCGTTCT
Found at i:7507981 original size:19 final size:20
Alignment explanation
Indices: 7507939--7507981 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7507929 AATAAATGTC
*
7507939 AAAACTTCTAATGTAATATT
1 AAAACTTCTAATGTAATATA
* *
7507959 AAAATTTCTAATG-GATATA
1 AAAACTTCTAATGTAATATA
7507978 AAAA
1 AAAA
7507982 AATTAATTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (20 bp):
AAAACTTCTAATGTAATATA
Found at i:7508554 original size:16 final size:17
Alignment explanation
Indices: 7508533--7508570 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
7508523 TTAAATAAAA
*
7508533 TAATTAAATTTA-AATT
1 TAATTAAAGTTATAATT
7508549 TAATTAAAGTTATAATT
1 TAATTAAAGTTATAATT
*
7508566 AAATT
1 TAATT
7508571 CTTTTATCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TAATTAAAGTTATAATT
Found at i:7509191 original size:5 final size:5
Alignment explanation
Indices: 7509181--7509205 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7509171 CTTGAGAGAT
7509181 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
7509206 ATATTAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:7509214 original size:6 final size:6
Alignment explanation
Indices: 7509203--7509227 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7509193 TTATTTTATT
7509203 TTAATA TTAATA TTAATA TTAATA T
1 TTAATA TTAATA TTAATA TTAATA T
7509228 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:7509242 original size:19 final size:20
Alignment explanation
Indices: 7509203--7509262 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
7509193 TTATTTTATT
* *
7509203 TTAATATT--AATATTAATA
1 TTAATATTAAAATTTTAAAA
7509221 TTAATA-TAAAATTTTAAAA
1 TTAATATTAAAATTTTAAAA
* * *
7509240 TTATTATTATATTTTTAAAA
1 TTAATATTAAAATTTTAAAA
7509260 TTA
1 TTA
7509263 TTTTTTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
17 1 0.03
18 6 0.18
19 13 0.38
20 14 0.41
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TTAATATTAAAATTTTAAAA
Found at i:7509269 original size:13 final size:14
Alignment explanation
Indices: 7509245--7509278 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
7509235 TAAAATTATT
7509245 ATTATATTTTTAAA
1 ATTATATTTTTAAA
7509259 ATTAT-TTTTTAAA
1 ATTATATTTTTAAA
7509272 ATT-TATT
1 ATTATATT
7509279 ATCATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.05
13 13 0.68
14 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTATATTTTTAAA
Found at i:7513770 original size:21 final size:20
Alignment explanation
Indices: 7513755--7513793 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7513745 ATAAAAACAG
7513755 AATT-AAGAATATTAAATAAAA
1 AATTCAAGAA-ATTAAA-AAAA
7513776 AATTCAAGAAATTAAAAA
1 AATTCAAGAAATTAAAAA
7513794 TAGAGTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 2 0.12
21 10 0.59
22 5 0.29
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.26
Consensus pattern (20 bp):
AATTCAAGAAATTAAAAAAA
Found at i:7514527 original size:15 final size:14
Alignment explanation
Indices: 7514506--7514541 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7514496 ATAATCCTTA
*
7514506 ATAATTATCTTAAT
1 ATAATTATCCTAAT
7514520 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
7514535 ATAATTA
1 ATAATTA
7514542 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:7515131 original size:17 final size:17
Alignment explanation
Indices: 7515100--7515146 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
7515090 ATTATATTTT
7515100 TTTATTT-TGATTTATA
1 TTTATTTATGATTTATA
*
7515116 TTTATTTATTATTTATA
1 TTTATTTATGATTTATA
*
7515133 TTT-TTTATGCTTTA
1 TTTATTTATGATTTA
7515147 GGAATATACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.70
Consensus pattern (17 bp):
TTTATTTATGATTTATA
Found at i:7515139 original size:20 final size:19
Alignment explanation
Indices: 7515091--7515140 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 19
7515081 AGTCCCAAAA
7515091 TTATATTTTTTTATTTTGAT
1 TTATA-TTTTTTATTTTGAT
7515111 TTATATTTATTTA--TT-AT
1 TTATATTT-TTTATTTTGAT
7515128 TTATATTTTTTAT
1 TTATATTTTTTAT
7515141 GCTTTAGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 4 0.14
17 10 0.36
18 2 0.07
19 3 0.11
20 9 0.32
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (19 bp):
TTATATTTTTTATTTTGAT
Found at i:7516373 original size:4 final size:4
Alignment explanation
Indices: 7516337--7516412 Score: 54
Period size: 4 Copynumber: 19.0 Consensus size: 4
7516327 TATTAATATC
* *
7516337 TAAA TAAG T-AA TAAA T-AA TAAAA TAAA GT-AA TAAA TAAA GTAAA GAAAA
1 TAAA TAAA TAAA TAAA TAAA T-AAA TAAA -TAAA TAAA TAAA -TAAA -TAAA
7516386 TAAA -ATAA T-AA TAAA TAAA TAAA TAAA
1 TAAA TA-AA TAAA TAAA TAAA TAAA TAAA
7516413 AATTGGGTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
3 10 0.17
4 37 0.63
5 12 0.20
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:7518109 original size:199 final size:199
Alignment explanation
Indices: 7517769--7518166 Score: 796
Period size: 199 Copynumber: 2.0 Consensus size: 199
7517759 ATATCGACAA
7517769 CCTTCGGCTAGATGGGTTTAGTGGCTCCTGGTTGTGGTGGAAAAGAAAATAAATAAAATAAAAAG
1 CCTTCGGCTAGATGGGTTTAGTGGCTCCTGGTTGTGGTGGAAAAGAAAATAAATAAAATAAAAAG
7517834 GAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCCTAGACTTTTGGGGAGAGAGTGTTTAA
66 GAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCCTAGACTTTTGGGGAGAGAGTGTTTAA
7517899 ATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATGCTAAGGGAGATAGTCTAATCCTACTT
131 ATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATGCTAAGGGAGATAGTCTAATCCTACTT
7517964 AAAC
196 AAAC
7517968 CCTTCGGCTAGATGGGTTTAGTGGCTCCTGGTTGTGGTGGAAAAGAAAATAAATAAAATAAAAAG
1 CCTTCGGCTAGATGGGTTTAGTGGCTCCTGGTTGTGGTGGAAAAGAAAATAAATAAAATAAAAAG
7518033 GAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCCTAGACTTTTGGGGAGAGAGTGTTTAA
66 GAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCCTAGACTTTTGGGGAGAGAGTGTTTAA
7518098 ATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATGCTAAGGGAGATAGTCTAATCCTACTT
131 ATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATGCTAAGGGAGATAGTCTAATCCTACTT
7518163 AAAC
196 AAAC
7518167 TCCCAAAATA
Statistics
Matches: 199, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
199 199 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (199 bp):
CCTTCGGCTAGATGGGTTTAGTGGCTCCTGGTTGTGGTGGAAAAGAAAATAAATAAAATAAAAAG
GAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCCTAGACTTTTGGGGAGAGAGTGTTTAA
ATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATGCTAAGGGAGATAGTCTAATCCTACTT
AAAC
Found at i:7518218 original size:199 final size:197
Alignment explanation
Indices: 7517808--7518219 Score: 567
Period size: 199 Copynumber: 2.1 Consensus size: 197
7517798 GGTTGTGGTG
7517808 GAAAAGAAAATAAATAAAATAAAAAGGAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCC
1 GAAAAGAAAATAAATAAAATAAAAAGGAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCC
7517873 TAGACTTTTGGGGAGAGAGTGTTTAAATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATG
66 TAGACTTTTGGGGAGAGAGTGTTTAAATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATG
**** * * *** * ** * **
7517938 CTAAGGGAGATAGTCTAATCCTACTTAAACCCTTCGGCTAGATGGGTTTAGTGGCTCCTGGTTGT
131 CTAAGGGAGATAGTCTAATCCTACTTAAACCCAAAAGATAAATACATTTAAT-G-TCAAGATAAT
***
7518003 GGTG
194 GAAA
7518007 GAAAAGAAAATAAATAAAATAAAAAGGAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCC
1 GAAAAGAAAATAAATAAAATAAAAAGGAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCC
7518072 TAGACTTTTGGGGAGAGAGTGTTTAAATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATG
66 TAGACTTTTGGGGAGAGAGTGTTTAAATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATG
* *
7518137 CTAAGGGAGATAGTCTAATCCTACTTAAACTCCCAAAATATAAATACATTTAAT-TGAAGATAAA
131 CTAAGGGAGATAGTCTAATCCTACTTAAA--CCCAAAAGATAAATACATTTAATGTCAAGAT-AA
7518201 T-AAA
193 TGAAA
*
7518205 GATAAATAAAATAAA
1 GA-AAAGAAAATAAA
7518220 ATCCTAAAAT
Statistics
Matches: 188, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
198 5 0.03
199 171 0.91
201 12 0.06
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (197 bp):
GAAAAGAAAATAAATAAAATAAAAAGGAGACTTTATTGAAAGGAAATATGAAAAGAACAAAAGCC
TAGACTTTTGGGGAGAGAGTGTTTAAATCGATCCTTTTGAGTTACTTCACCCCCTATTTATAATG
CTAAGGGAGATAGTCTAATCCTACTTAAACCCAAAAGATAAATACATTTAATGTCAAGATAATGA
AA
Found at i:7518264 original size:15 final size:14
Alignment explanation
Indices: 7518243--7518278 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7518233 ATAATCCTTA
*
7518243 ATAATTATCTTAAT
1 ATAATTATCCTAAT
7518257 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
7518272 ATAATTA
1 ATAATTA
7518279 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:7523995 original size:17 final size:17
Alignment explanation
Indices: 7523973--7524005 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7523963 ATATTTTTTA
7523973 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
7523990 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
7524006 TATATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:7528801 original size:20 final size:21
Alignment explanation
Indices: 7528773--7528812 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7528763 CATGCCCTAG
7528773 AAAACTCACATTT-CTCAACC
1 AAAACTCACATTTGCTCAACC
*
7528793 AAAATTCACATTTGCTCAAC
1 AAAACTCACATTTGCTCAAC
7528813 TTAGCAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.40, C:0.30, G:0.03, T:0.28
Consensus pattern (21 bp):
AAAACTCACATTTGCTCAACC
Found at i:7533914 original size:35 final size:35
Alignment explanation
Indices: 7533868--7533938 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
7533858 ATTGAACACA
7533868 TATTCAATAGTATTGAAATACAAATTCATTAGTGC
1 TATTCAATAGTATTGAAATACAAATTCATTAGTGC
7533903 TATTCAATAGTATTGAAATACAAATTCATTAGTGC
1 TATTCAATAGTATTGAAATACAAATTCATTAGTGC
7533938 T
1 T
7533939 CCACCTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.38
Consensus pattern (35 bp):
TATTCAATAGTATTGAAATACAAATTCATTAGTGC
Found at i:7533998 original size:15 final size:16
Alignment explanation
Indices: 7533962--7533998 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7533952 TTATTGAATC
*
7533962 ATTTTTAAAATCAAAT
1 ATTTTTAAAATAAAAT
*
7533978 ATTTTTAACATAAAAT
1 ATTTTTAAAATAAAAT
7533994 ATTTT
1 ATTTT
7533999 CTTTCACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTTTTAAAATAAAAT
Found at i:7537276 original size:24 final size:24
Alignment explanation
Indices: 7537249--7537297 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
7537239 TCTTCTTCTT
7537249 CTTTTTCTTTCTCATT-TTCAGCAA
1 CTTTTTCTTTCTC-TTCTTCAGCAA
*
7537273 CTTTTTCTTTTTCTTCTTCAGCAA
1 CTTTTTCTTTCTCTTCTTCAGCAA
7537297 C
1 C
7537298 AACTTCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.14, C:0.27, G:0.04, T:0.55
Consensus pattern (24 bp):
CTTTTTCTTTCTCTTCTTCAGCAA
Found at i:7545214 original size:25 final size:25
Alignment explanation
Indices: 7545076--7545215 Score: 60
Period size: 25 Copynumber: 5.6 Consensus size: 25
7545066 GTCCCGATAT
*
7545076 ATGGCTCTTTGGAGCTT-CTCGATTA
1 ATGGCTCTTTAGAGCTTCCT-GATTA
* * *
7545101 AAGGCTTTTTATGAGCTTCCTAATTA
1 ATGGCTCTTTA-GAGCTTCCTGATTA
* *** *
7545127 ATAGCTCCCCACAGCTTCCTGA-T-
1 ATGGCTCTTTAGAGCTTCCTGATTA
*
7545150 ATGGCT-TGCTT-GAACTT-CTCGA-TA
1 ATGGCTCT--TTAGAGCTTCCT-GATTA
* * *
7545174 TATGGCTATCTGGAGCTTCCTGATTA
1 -ATGGCTCTTTAGAGCTTCCTGATTA
7545200 ATGGCTCTTTAGAGCT
1 ATGGCTCTTTAGAGCT
7545216 ACCCGTTATT
Statistics
Matches: 81, Mismatches: 23, Indels: 22
0.64 0.18 0.17
Matches are distributed among these distances:
22 2 0.02
23 12 0.15
24 2 0.02
25 43 0.53
26 20 0.25
27 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (25 bp):
ATGGCTCTTTAGAGCTTCCTGATTA
Found at i:7549543 original size:43 final size:43
Alignment explanation
Indices: 7549491--7549618 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 43
7549481 TAGGACTTCT
*
7549491 GATATGTGTTATCGTGTAAGACCACGTCTGGGACATTGGCATC
1 GATATGTGTTATCGTGTAAGACCACGTCTGGGATATTGGCATC
*
7549534 GACT-TGTGTT-TACGTGTAAGACC-CTGTCTGGGATAGTGGCATC
1 GA-TATGTGTTAT-CGTGTAAGACCAC-GTCTGGGATATTGGCATC
* * *
7549577 GATATGTGATTA-CATGTAAGACCAAGTCTGGGATGTTGGCAT
1 GATATGTG-TTATCGTGTAAGACCACGTCTGGGATATTGGCAT
7549619 TGTACAAGCT
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
42 3 0.04
43 66 0.92
44 3 0.04
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGTTATCGTGTAAGACCACGTCTGGGATATTGGCATC
Found at i:7554789 original size:40 final size:39
Alignment explanation
Indices: 7554734--7554868 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 39
7554724 ACTAGTTTGG
* *
7554734 CACCCAATGCCTCATCGGATAATTCGAAGTAAAAATTTGA
1 CACCCAGTGCCTCATCGGATAATCCGAAGTAAAAA-TTGA
* * * * *
7554774 CACCCAGTGTCTCATCAGCTAAACCGAAGT--AAATTGG
1 CACCCAGTGCCTCATCGGATAATCCGAAGTAAAAATTGA
* *
7554811 CACCCAGTGCCTCATCGAATATATCCGAAGCAATAAATTGA
1 CACCCAGTGCCTCATCGGATA-ATCCGAAGTAA-AAATTGA
*
7554852 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
7554869 ACTCGAAGTC
Statistics
Matches: 76, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 20 0.26
38 10 0.13
40 24 0.32
41 22 0.29
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAATCCGAAGTAAAAATTGA
Found at i:7554856 original size:41 final size:39
Alignment explanation
Indices: 7554734--7554869 Score: 127
Period size: 41 Copynumber: 3.5 Consensus size: 39
7554724 ACTAGTTTGG
* * *
7554734 CACCCAATGCCTCATCGGATAATTCGAAGTAA-AAATTTGA
1 CACCCAGTGCCTCATCGAATAATCCGAAG-AATAAA-TTGA
* * * *
7554774 CACCCAGTGTCTCATC-AGCTAAACCGAAG--TAAATTGG
1 CACCCAGTGCCTCATCGA-ATAATCCGAAGAATAAATTGA
7554811 CACCCAGTGCCTCATCGAATATATCCGAAGCAATAAATTGA
1 CACCCAGTGCCTCATCGAATA-ATCCGAAG-AATAAATTGA
*
7554852 CACCCAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
7554870 CTCGAAGTCA
Statistics
Matches: 77, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
37 20 0.26
38 11 0.14
40 22 0.29
41 24 0.31
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGAATAATCCGAAGAATAAATTGA
Found at i:7555830 original size:22 final size:22
Alignment explanation
Indices: 7555805--7555847 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7555795 TATTTATTTC
*
7555805 ATTTAC-TTATTTATTTTATTAA
1 ATTTACTTTA-TTATTATATTAA
7555827 ATTTACTTTATTATTATATTA
1 ATTTACTTTATTATTATATTA
7555848 TATATATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTACTTTATTATTATATTAA
Found at i:7556975 original size:20 final size:20
Alignment explanation
Indices: 7556952--7557002 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
7556942 ATTTTATTTT
7556952 AAAAATTAAAACAAAAATAA
1 AAAAATTAAAACAAAAATAA
**** *
7556972 AAAAATTATTTTAAAATTAA
1 AAAAATTAAAACAAAAATAA
7556992 AAAAATTAAAA
1 AAAAATTAAAA
7557003 GTATTTTTAA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAAATTAAAACAAAAATAA
Found at i:7557020 original size:11 final size:11
Alignment explanation
Indices: 7556997--7557026 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
7556987 ATTAAAAAAA
7556997 TTAAAAGTATTT
1 TTAAAA-TATTT
7557009 TTAAAATATTT
1 TTAAAATATTT
7557020 TTAAAAT
1 TTAAAAT
7557027 TAAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TTAAAATATTT
Found at i:7557055 original size:11 final size:11
Alignment explanation
Indices: 7557041--7557066 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7557031 AAAATTTAAA
7557041 AAAAGTATTTT
1 AAAAGTATTTT
7557052 AAAAGTATTTT
1 AAAAGTATTTT
7557063 AAAA
1 AAAA
7557067 TTCAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:7557061 original size:42 final size:40
Alignment explanation
Indices: 7556973--7557085 Score: 144
Period size: 41 Copynumber: 2.8 Consensus size: 40
7556963 CAAAAATAAA
7556973 AAAATTATTTTAAAATTAAAAAAATT---AAAAGTATTTTT
1 AAAA-TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTT
7557011 AAAATATTTTTAAAATTAAAAAAATTTAAAAAAAGTA-TTTT
1 AAAATA-TTTTAAAATTAAAAAAA-TTAAAAAAAGTATTTTT
*
7557052 AAAAGTATTTTAAAATTCAAAAAAATAAAAAAAA
1 AAAA-TATTTTAAAATT-AAAAAAATTAAAAAAA
7557086 TAAAAAATTA
Statistics
Matches: 67, Mismatches: 1, Indels: 11
0.85 0.01 0.14
Matches are distributed among these distances:
37 2 0.03
38 21 0.31
39 2 0.03
41 26 0.39
42 16 0.24
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (40 bp):
AAAATATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTT
Found at i:7558095 original size:2 final size:2
Alignment explanation
Indices: 7558088--7558119 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7558078 GTCTAGATTC
7558088 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7558120 TCTGAGGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7563596 original size:31 final size:31
Alignment explanation
Indices: 7563561--7563623 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7563551 AAGTCTATCA
7563561 AGCTCTAATAAATTCTGAAATATATTTACTT
1 AGCTCTAATAAATTCTGAAATATATTTACTT
7563592 AGCTCTAATAAATTCTGAAATATATTTACTT
1 AGCTCTAATAAATTCTGAAATATATTTACTT
7563623 A
1 A
7563624 CTTCTTAGGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.41
Consensus pattern (31 bp):
AGCTCTAATAAATTCTGAAATATATTTACTT
Found at i:7564495 original size:24 final size:24
Alignment explanation
Indices: 7564468--7564540 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 24
7564458 ATCCTTTGAG
*
7564468 GGATGTGAAATCTTATCCCCTGAT
1 GGATGTGAAATCTTATCCCCTGAA
*
7564492 GGATGAATGATAA---TATCCCATGAA
1 GGATG--TGA-AATCTTATCCCCTGAA
*
7564516 GGATGTGAAATCTTATCCTCTGAA
1 GGATGTGAAATCTTATCCCCTGAA
7564540 G
1 G
7564541 AATCAATGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
21 2 0.05
22 3 0.08
24 29 0.74
26 3 0.08
27 2 0.05
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (24 bp):
GGATGTGAAATCTTATCCCCTGAA
Found at i:7575293 original size:42 final size:42
Alignment explanation
Indices: 7575229--7575340 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 42
7575219 AACTCATATA
* * *
7575229 AGTTTCCGTTCAACCTTAATGGGTTTCTC-TTCATCTCTTTTG
1 AGTTT-CGTTCAACCTTTATGGGTTTCTCGTTCAGCTCTTATG
* *
7575271 AGTTTCTGTTTAACCTTTATGGGTTTC-CGTTTAGCTCTTATG
1 AGTTTC-GTTCAACCTTTATGGGTTTCTCGTTCAGCTCTTATG
* *
7575313 AGCTTTCGTTCAACCCTTACGGGTTTCT
1 AG-TTTCGTTCAACCTTTATGGGTTTCT
7575341 ATTTCGCACT
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
41 2 0.03
42 52 0.90
43 4 0.07
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (42 bp):
AGTTTCGTTCAACCTTTATGGGTTTCTCGTTCAGCTCTTATG
Found at i:7575303 original size:21 final size:21
Alignment explanation
Indices: 7575230--7575301 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
7575220 ACTCATATAA
*
7575230 GTTTCCGTTCAACCTTAATGG
1 GTTTCCGTTCAACCTTTATGG
* *
7575251 GTTTCTC-TTCATCTCTTT-TGA
1 GTTTC-CGTTCAAC-CTTTATGG
* *
7575272 GTTTCTGTTTAACCTTTATGG
1 GTTTCCGTTCAACCTTTATGG
7575293 GTTTCCGTT
1 GTTTCCGTT
7575302 TAGCTCTTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
20 4 0.10
21 31 0.79
22 4 0.10
ACGTcount: A:0.12, C:0.21, G:0.17, T:0.50
Consensus pattern (21 bp):
GTTTCCGTTCAACCTTTATGG
Found at i:7577281 original size:49 final size:49
Alignment explanation
Indices: 7577228--7577481 Score: 277
Period size: 49 Copynumber: 5.1 Consensus size: 49
7577218 GGCAAGGTAC
*
7577228 AAGTATAGCCTGATATATATGTGTGTATATATTTATATAAAGGTTAATA
1 AAGTATAGCCTAATATATATGTGTGTATATATTTATATAAAGGTTAATA
* * *
7577277 AAGTA-A-ACTAATTATTAATTATATGTGTATATATTTATATAAA-TTTATATA
1 AAGTATAGCCTAA-TA-T-A-TATGTGTGTATATATTTATATAAAGGTTA-ATA
* *
7577328 AAATATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATA
1 AAGTATAGCCTAATATATATGTGTGTATATATTTATATAAAGGTTAATA
* * *
7577377 AAGTA-A-ACTAATTATTAATTATATGTGTATATATTTATATAAA-TTTATATA
1 AAGTATAGCCTAA-TA-T-A-TATGTGTGTATATATTTATATAAAGGTTA-ATA
* *
7577428 AAATATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATA
1 AAGTATAGCCTAATATATATGTGTGTATATATTTATATAAAGGTTAATA
7577477 AAGTA
1 AAGTA
7577482 AACCAATTAT
Statistics
Matches: 169, Mismatches: 20, Indels: 32
0.76 0.09 0.14
Matches are distributed among these distances:
47 6 0.04
48 6 0.04
49 67 0.40
50 16 0.09
51 62 0.37
52 6 0.04
53 6 0.04
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.44
Consensus pattern (49 bp):
AAGTATAGCCTAATATATATGTGTGTATATATTTATATAAAGGTTAATA
Found at i:7577515 original size:49 final size:48
Alignment explanation
Indices: 7577252--7577515 Score: 220
Period size: 49 Copynumber: 5.3 Consensus size: 48
7577242 ATATATGTGT
*
7577252 GTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAATTATA
1 GTATATATTTATATAAAGGTTAATAAAGTAAACCAATTATTAATTATA
* * * *
7577300 TGTGTATATATTTATATAAA-TTTATATAAAATATAGCC--TTATATATATGTGT-
1 ---GTATATATTTATATAAAGGTTA-ATAAAGTA-AACCAATTAT-TA-AT-TATA
*
7577352 GTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAATTATA
1 GTATATATTTATATAAAGGTTAATAAAGTAAACCAATTATTAATTATA
* * * *
7577400 TGTGTATATATTTATATAAA-TTTATATAAAATATAGCC--TTATATATATGTGT-
1 ---GTATATATTTATATAAAGGTTA-ATAAAGTA-AACCAATTAT-TA-AT-TATA
7577452 GTATATATTTATATAAAGGTTAATAAAGTAAACCAATTATTAATTATA
1 GTATATATTTATATAAAGGTTAATAAAGTAAACCAATTATTAATTATA
*
7577500 GTATATGTTTAATATA
1 GTATATATTT-ATATA
7577516 TTAAAATTAA
Statistics
Matches: 171, Mismatches: 20, Indels: 46
0.72 0.08 0.19
Matches are distributed among these distances:
47 4 0.02
48 18 0.11
49 57 0.33
50 28 0.16
51 52 0.30
52 8 0.05
53 4 0.02
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (48 bp):
GTATATATTTATATAAAGGTTAATAAAGTAAACCAATTATTAATTATA
Found at i:7577516 original size:100 final size:100
Alignment explanation
Indices: 7577231--7577499 Score: 520
Period size: 100 Copynumber: 2.7 Consensus size: 100
7577221 AAGGTACAAG
*
7577231 TATAGCCTGATATATATGTGTGTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAAT
1 TATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAAT
7577296 TATATGTGTATATATTTATATAAATTTATATAAAA
66 TATATGTGTATATATTTATATAAATTTATATAAAA
7577331 TATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAAT
1 TATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAAT
7577396 TATATGTGTATATATTTATATAAATTTATATAAAA
66 TATATGTGTATATATTTATATAAATTTATATAAAA
*
7577431 TATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATAAAGTAAACCAATTATTAAT
1 TATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAAT
7577496 TATA
66 TATA
7577500 GTATATGTTT
Statistics
Matches: 167, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 167 1.00
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.44
Consensus pattern (100 bp):
TATAGCCTTATATATATGTGTGTATATATTTATATAAAGGTTAATAAAGTAAACTAATTATTAAT
TATATGTGTATATATTTATATAAATTTATATAAAA
Found at i:7578442 original size:43 final size:43
Alignment explanation
Indices: 7578377--7578576 Score: 269
Period size: 43 Copynumber: 4.7 Consensus size: 43
7578367 ATGTGATTTT
* * *
7578377 GTGTAAGACCACGCCTGAGACGTTGGCATCGACTTGTGTTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGTTTAC
7578420 GTGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGTTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGTTTAC
7578463 GTGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGTTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGTTTAC
* * * * ***
7578506 GTGTAAGACCCTGTCTAGGACAG-TGACATCGATTTGTAAATAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCGACTTGTGTTTAC
* *
7578549 ATGTAAGACCACGTC-GGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
7578577 TTTACAGACT
Statistics
Matches: 140, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
41 1 0.01
42 9 0.06
43 129 0.92
44 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGTTTAC
Found at i:7579578 original size:14 final size:13
Alignment explanation
Indices: 7579545--7579579 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
7579535 TTTAAGCATG
7579545 AGCATTTATGCAC
1 AGCATTTATGCAC
7579558 AGCATTTATGCAC
1 AGCATTTATGCAC
7579571 ATGCATTTA
1 A-GCATTTA
7579580 AATAGATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.67
14 7 0.33
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (13 bp):
AGCATTTATGCAC
Found at i:7582313 original size:862 final size:862
Alignment explanation
Indices: 7580650--7583238 Score: 4962
Period size: 862 Copynumber: 3.0 Consensus size: 862
7580640 TCGGGGTAGG
7580650 TTAGATGATGACCCAGTCAAAGCTGAATATTGGCTTCATAATACAATAAGAGTTTTTGAAGAAAT
1 TTAGATGATGACCCAGTCAAAGCTGAATATTGGCTTCATAATACAATAAGAGTTTTTGAAGAAAT
* *
7580715 AGCTTGTTCTCTCGATGATTATCTGAGATGTGTTGTTTCATTAGTGAAAGAGGAAGCTTATAATT
66 AGCTTGTTCTCCCGATGATTATCTGAGATGTGCTGTTTCATTAGTGAAAGAGGAAGCTTATAATT
**
7580780 GGTGGTCAACAATAGTGGCTGGAGTGCTAAAAGAAAAAATCTCATGGGAATTCTTCTAAAGCGAA
131 GGTGGTCAACAATAGTGGCTATAGTGCTAAAAGAAAAAATCTCATGGGAATTCTTCTAAAGCGAA
* *
7580845 TTTAAAAAGAAATATGTCGACAAGAGGTATTTAGATAAGAAAAAGAGGGAATTTATTAACTCGCG
196 TTTAAAAAGAAATATGTCGACAAGAGGTATTTAGACAAGAAAAAGAGGGAATTTCTTAACTCGCG
*
7580910 CCAAGGAAATAGATCGGTAGCCGAGTATGAGAGACAATTTGTATACCTCAGTAAATATGCCCGAG
261 CCAAGGAAATAGATCGGTAGCCGAGTATGAGAGGCAATTTGTATACCTCAGTAAATATGCCCGAG
7580975 AAATTGTACCACCCGAAGAAGAAATGTGCATTCGGTTTGAAGAAGGGTTGATTCTGGATTCATGA
326 AAATTGTACCACCCGAAGAAGAAATGTGCATTCGGTTTGAAGAAGGGTTGATTCTGGATTCATGA
*
7581040 GGTGGGATTTTTGGGTCACATTGTATTAGCTGAAGGGACTCGAGTTAATCTGAGAAAAGTATCTG
391 GGTGGGATTTTTGGGTCACATTGTATCAGCTGAAGGGACTCGAGTTAATCTGAGAAAAGTATCTG
7581105 TAGTGGTAAATTGGAAGACTCCGAAAAATGTTTCAGAAGTGCGAAGTTTTCTGGCTCTAGCAGGT
456 TAGTGGTAAATTGGAAGACTCCGAAAAATGTTTCAGAAGTGCGAAGTTTTCTGGCTCTAGCAGGT
7581170 TATTACAGGCGTTTTGTCAAGAACTTTTCGATGATTGGTTCGCCGTTGACCTGATTGTTACAGAA
521 TATTACAGGCGTTTTGTCAAGAACTTTTCGATGATTGGTTCGCCGTTGACCTGATTGTTACAGAA
7581235 AAATGTTCAATTTGTTTGGTCTGATGAGTGTCAGCAGAGTTTTGATCAGTTGAAAAAGATGTTGA
586 AAATGTTCAATTTGTTTGGTCTGATGAGTGTCAGCAGAGTTTTGATCAGTTGAAAAAGATGTTGA
*
7581300 CAGAAGCTCTGGTCTTGACTCGGCCAGAATCTGGTGTACCATATGTTGTTTATAGTGATGCATCT
651 CAGAAGCTCCGGTCTTGACTCGGCCAGAATCTGGTGTACCATATGTTGTTTATAGTGATGCATCT
7581365 CTGAATAGTTTGGGTTATGTATTGGTGCAGCCAGGAAAGGTAGTAGCCTATGCTTCTCGACAATT
716 CTGAATAGTTTGGGTTATGTATTGGTGCAGCCAGGAAAGGTAGTAGCCTATGCTTCTCGACAATT
7581430 AAAGCCACACGAGAAGAATTATCATACAGATGATCTTGAGTTGGCTACAATCGTATTTGCTTTGA
781 AAAGCCACACGAGAAGAATTATCATACAGATGATCTTGAGTTGGCTACAATCGTATTTGCTTTGA
7581495 AGACTTGGAGACATTTC
846 AGACTTGGAGACATTTC
7581512 TTAGATGATGACCCAGTCAAAGCTGAATATTGGCTTCATAATACAATAAGAGTTTTTGAAGAAAT
1 TTAGATGATGACCCAGTCAAAGCTGAATATTGGCTTCATAATACAATAAGAGTTTTTGAAGAAAT
7581577 AGCTTGTTCTCCCGATGATTATCTGAGATGTGCTGTTTCATTAGTGAAAGAGGAAGCTTATAATT
66 AGCTTGTTCTCCCGATGATTATCTGAGATGTGCTGTTTCATTAGTGAAAGAGGAAGCTTATAATT
7581642 GGTGGTCAACAATAGTGGCTATAGTGCTAAAAGAAAAAATCTCATGGGAATTCTTCTAAAGCGAA
131 GGTGGTCAACAATAGTGGCTATAGTGCTAAAAGAAAAAATCTCATGGGAATTCTTCTAAAGCGAA
7581707 TTTAAAAAGAAATATGTCGACAAGAGGTATTTAGACAAGAAAAAGAGGGAATTTCTTAACTCGCG
196 TTTAAAAAGAAATATGTCGACAAGAGGTATTTAGACAAGAAAAAGAGGGAATTTCTTAACTCGCG
* *
7581772 CCAAGGAAATAGATCGGTGGCCGAGTATGAGAGGCAATTTGTATACCTCAGTAAATATGCCCAAG
261 CCAAGGAAATAGATCGGTAGCCGAGTATGAGAGGCAATTTGTATACCTCAGTAAATATGCCCGAG
7581837 AAATTGTACCACCCGAAGAAGAAATGTGCATTCGGTTTGAAGAAGGGTTGATTCTGGATTCATGA
326 AAATTGTACCACCCGAAGAAGAAATGTGCATTCGGTTTGAAGAAGGGTTGATTCTGGATTCATGA
* * *
7581902 GGTGGGATTTTTGGGTCACATTATATCAGCTGAAGAGACTCGAGTTAATCTGAGAAAATTATCTG
391 GGTGGGATTTTTGGGTCACATTGTATCAGCTGAAGGGACTCGAGTTAATCTGAGAAAAGTATCTG
7581967 TAGTGGTAAATTGGAAGACTCCGAAAAATGTTTCAGAAGTGCGAAGTTTTCTGGCTCTAGCAGGT
456 TAGTGGTAAATTGGAAGACTCCGAAAAATGTTTCAGAAGTGCGAAGTTTTCTGGCTCTAGCAGGT
*
7582032 TATTACAGACGTTTTGTCAAGAACTTTTCGATGATTGGTTCGCCGTTGACCTGATTGTTACAGAA
521 TATTACAGGCGTTTTGTCAAGAACTTTTCGATGATTGGTTCGCCGTTGACCTGATTGTTACAGAA
7582097 AAATGTTCAATTTGTTTGGTCTGATGAGTGTCAGCAGAGTTTTGATCAGTTGAAAAAGATGTTGA
586 AAATGTTCAATTTGTTTGGTCTGATGAGTGTCAGCAGAGTTTTGATCAGTTGAAAAAGATGTTGA
7582162 CAGAAGCTCCGGTCTTGACTCGGCCAGAATCTGGTGTACCATATGTTGTTTATAGTGATGCATCT
651 CAGAAGCTCCGGTCTTGACTCGGCCAGAATCTGGTGTACCATATGTTGTTTATAGTGATGCATCT
7582227 CTGAATAGTTTGGGTTATGTATTGGTGCAGCCAGGAAAGGTAGTAGCCTATGCTTCTCGACAATT
716 CTGAATAGTTTGGGTTATGTATTGGTGCAGCCAGGAAAGGTAGTAGCCTATGCTTCTCGACAATT
7582292 AAAGCCACACGAGAAGAATTATCATACAGATGATCTTGAGTTGGCTACAATCGTATTTGCTTTGA
781 AAAGCCACACGAGAAGAATTATCATACAGATGATCTTGAGTTGGCTACAATCGTATTTGCTTTGA
7582357 AGACTTGGAGACATTTC
846 AGACTTGGAGACATTTC
7582374 TTAGATGATGACCCAGTCAAAGCTGAATATTGGCTTCATAATACAATAAGAGTTTTTGAAGAAAT
1 TTAGATGATGACCCAGTCAAAGCTGAATATTGGCTTCATAATACAATAAGAGTTTTTGAAGAAAT
*
7582439 AGCTTGTTCTCCCGATGATTATCTGAGATGTGCTGTTTCATTAGTGAAAGAAGAAGCTTATAATT
66 AGCTTGTTCTCCCGATGATTATCTGAGATGTGCTGTTTCATTAGTGAAAGAGGAAGCTTATAATT
7582504 GGTGGTCAACAATAGTGGCTATAGTGCTAAAAGAAAAAATCTCATGGGAATTCTTCTAAAGCGAA
131 GGTGGTCAACAATAGTGGCTATAGTGCTAAAAGAAAAAATCTCATGGGAATTCTTCTAAAGCGAA
7582569 TTTAAAAAGAAATATGTCGACAAGAGGTATTTAGACAAGAAAAAGAGGGAATTTCTTAACTCGCG
196 TTTAAAAAGAAATATGTCGACAAGAGGTATTTAGACAAGAAAAAGAGGGAATTTCTTAACTCGCG
7582634 CCAAGGAAATAGATCGGTAGCCGAGTATGAGAGGCAATTTGTATACCTCAGTAAATATGCCCGAG
261 CCAAGGAAATAGATCGGTAGCCGAGTATGAGAGGCAATTTGTATACCTCAGTAAATATGCCCGAG
* *
7582699 AAATTGTACCACCCGAAGAAAAAATGTGCATTCGGTTTGAAGAAAGGTTGATTCTGGATTCATGA
326 AAATTGTACCACCCGAAGAAGAAATGTGCATTCGGTTTGAAGAAGGGTTGATTCTGGATTCATGA
*
7582764 GGTGGGATTTTTGGGTCACATTGTATCAGCTGAAGGGACTTGAGTTAATCTGAGAAAAGTATCTG
391 GGTGGGATTTTTGGGTCACATTGTATCAGCTGAAGGGACTCGAGTTAATCTGAGAAAAGTATCTG
7582829 TAGTGGTAAATTGGAAGACTCCGAAAAATGTTTCAGAAGTGCGAAGTTTTCTGGCTCTAGCAGGT
456 TAGTGGTAAATTGGAAGACTCCGAAAAATGTTTCAGAAGTGCGAAGTTTTCTGGCTCTAGCAGGT
7582894 TATTACAGGCGTTTTGTCAAGAACTTTTCGATGATTGGTTCGCCGTTGACCTGATTGTTACAGAA
521 TATTACAGGCGTTTTGTCAAGAACTTTTCGATGATTGGTTCGCCGTTGACCTGATTGTTACAGAA
* *
7582959 AAACGTTAAATTTGTTTGGTCTGATGAGTGTCAGCAGAGTTTTGATCAGTTGAAAAAGATGTTGA
586 AAATGTTCAATTTGTTTGGTCTGATGAGTGTCAGCAGAGTTTTGATCAGTTGAAAAAGATGTTGA
*
7583024 CAGAAGCTCCGGTCTTGACTCGGCCAGAATCTAGTGTACCATATGTTGTTTATAGTGATGCATCT
651 CAGAAGCTCCGGTCTTGACTCGGCCAGAATCTGGTGTACCATATGTTGTTTATAGTGATGCATCT
* *
7583089 CTGAATAGTTTGGGTTATGTATTGGTGTAGCCAGGAAAGGTAGTGGCCTATGCTTCTCGACAATT
716 CTGAATAGTTTGGGTTATGTATTGGTGCAGCCAGGAAAGGTAGTAGCCTATGCTTCTCGACAATT
7583154 AAAGCCACACGAGAAGAATTATCATACAGATGATCTTGAGTTGGCTACAATCGTATTTGCTTTGA
781 AAAGCCACACGAGAAGAATTATCATACAGATGATCTTGAGTTGGCTACAATCGTATTTGCTTTGA
7583219 AGACTTGGAGACATTTC
846 AGACTTGGAGACATTTC
7583236 TTA
1 TTA
7583239 TATGGTGAGA
Statistics
Matches: 1697, Mismatches: 30, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
862 1697 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (862 bp):
TTAGATGATGACCCAGTCAAAGCTGAATATTGGCTTCATAATACAATAAGAGTTTTTGAAGAAAT
AGCTTGTTCTCCCGATGATTATCTGAGATGTGCTGTTTCATTAGTGAAAGAGGAAGCTTATAATT
GGTGGTCAACAATAGTGGCTATAGTGCTAAAAGAAAAAATCTCATGGGAATTCTTCTAAAGCGAA
TTTAAAAAGAAATATGTCGACAAGAGGTATTTAGACAAGAAAAAGAGGGAATTTCTTAACTCGCG
CCAAGGAAATAGATCGGTAGCCGAGTATGAGAGGCAATTTGTATACCTCAGTAAATATGCCCGAG
AAATTGTACCACCCGAAGAAGAAATGTGCATTCGGTTTGAAGAAGGGTTGATTCTGGATTCATGA
GGTGGGATTTTTGGGTCACATTGTATCAGCTGAAGGGACTCGAGTTAATCTGAGAAAAGTATCTG
TAGTGGTAAATTGGAAGACTCCGAAAAATGTTTCAGAAGTGCGAAGTTTTCTGGCTCTAGCAGGT
TATTACAGGCGTTTTGTCAAGAACTTTTCGATGATTGGTTCGCCGTTGACCTGATTGTTACAGAA
AAATGTTCAATTTGTTTGGTCTGATGAGTGTCAGCAGAGTTTTGATCAGTTGAAAAAGATGTTGA
CAGAAGCTCCGGTCTTGACTCGGCCAGAATCTGGTGTACCATATGTTGTTTATAGTGATGCATCT
CTGAATAGTTTGGGTTATGTATTGGTGCAGCCAGGAAAGGTAGTAGCCTATGCTTCTCGACAATT
AAAGCCACACGAGAAGAATTATCATACAGATGATCTTGAGTTGGCTACAATCGTATTTGCTTTGA
AGACTTGGAGACATTTC
Found at i:7586411 original size:42 final size:40
Alignment explanation
Indices: 7586350--7586478 Score: 132
Period size: 42 Copynumber: 3.1 Consensus size: 40
7586340 GTTTAACTTA
* *
7586350 TATGAGTTTCTGTTAAACCCTAATGGGTTTCTGTTCAGCTCT
1 TATGAGCTT-TGTTAAACCCTTATGGGTTT-TGTTCAGCTCT
* *
7586392 TTTGAGCTTGTGTTTAACCCTTATGGGTTTTCGTTCAGCTCT
1 TATGAGCTT-TGTTAAACCCTTATGGGTTTT-GTTCAGCTCT
* * * *
7586434 TATGAGCTTTCGTTCAACCCTTACGGGTTTTTGTTTAGCACT
1 TATGAGCTTT-GTTAAACCCTTATGGG-TTTTGTTCAGCTCT
7586476 TAT
1 TAT
7586479 ATACTTCTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.03
42 68 0.92
43 4 0.05
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45
Consensus pattern (40 bp):
TATGAGCTTTGTTAAACCCTTATGGGTTTTGTTCAGCTCT
Found at i:7586437 original size:21 final size:21
Alignment explanation
Indices: 7586411--7586478 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
7586401 GTGTTTAACC
*
7586411 CTTATGGGTTTTCGTTCAGCT
1 CTTATGGGTTTTCGTTCAGCA
* * * *
7586432 CTTATGAGCTTTCGTTCAACC
1 CTTATGGGTTTTCGTTCAGCA
* * *
7586453 CTTACGGGTTTTTGTTTAGCA
1 CTTATGGGTTTTCGTTCAGCA
7586474 CTTAT
1 CTTAT
7586479 ATACTTCTTT
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.46
Consensus pattern (21 bp):
CTTATGGGTTTTCGTTCAGCA
Found at i:7587538 original size:51 final size:51
Alignment explanation
Indices: 7587427--7587527 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
7587417 ATTTTTTTGG
* *
7587427 ACAAAAAATATTCTAAACAAGAATGGTTTATTCAAAATAAATGTTAAAATA
1 ACAAAAAAAATTCCAAACAAGAATGGTTTATTCAAAATAAATGTTAAAATA
7587478 ACAAAAAAAATTCCAAACAAGAATGGTTTATTCAAAATAAATGTTAAAAT
1 ACAAAAAAAATTCCAAACAAGAATGGTTTATTCAAAATAAATGTTAAAAT
7587528 TGTAAAAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (51 bp):
ACAAAAAAAATTCCAAACAAGAATGGTTTATTCAAAATAAATGTTAAAATA
Found at i:7589179 original size:58 final size:58
Alignment explanation
Indices: 7589117--7589226 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
7589107 TGTTACCTCC
*
7589117 TTTTT-GTCTAACTATTCTTACTAACTCCCATTTTT-GCAAACTCTTCTAGCTAGCCTTT
1 TTTTTAGTCTAACTATTCTGACTAA--CCCATTTTTGGCAAACTCTTCTAGCTAGCCTTT
* * * *
7589175 TTTTTAGTCTAACTCTTCTGGCTAACCCTTTTTTGGCAAACTCTTCTGGCTA
1 TTTTTAGTCTAACTATTCTGACTAACCCATTTTTGGCAAACTCTTCTAGCTA
7589227 ACTCCTTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
57 8 0.18
58 21 0.47
59 16 0.36
ACGTcount: A:0.19, C:0.25, G:0.10, T:0.45
Consensus pattern (58 bp):
TTTTTAGTCTAACTATTCTGACTAACCCATTTTTGGCAAACTCTTCTAGCTAGCCTTT
Found at i:7589229 original size:13 final size:13
Alignment explanation
Indices: 7589183--7589230 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
7589173 TTTTTTTAGT
7589183 CTAACTCTTCTGG
1 CTAACTCTTCTGG
* *
7589196 CTAACCCTTTTTTGG
1 CTAA--CTCTTCTGG
*
7589211 CAAACTCTTCTGG
1 CTAACTCTTCTGG
7589224 CTAACTC
1 CTAACTC
7589231 CTTTTTAGCA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
13 17 0.63
15 10 0.37
ACGTcount: A:0.19, C:0.31, G:0.12, T:0.38
Consensus pattern (13 bp):
CTAACTCTTCTGG
Found at i:7589236 original size:58 final size:57
Alignment explanation
Indices: 7589113--7589265 Score: 152
Period size: 57 Copynumber: 2.7 Consensus size: 57
7589103 TTTTTGTTAC
* ** * *
7589113 CTCCTTTTT-GTCTAACTATTCTTACTAACTCCCATTTTTGCAAACTCTTCTAGCTAGC
1 CTCCTTTTTAGTCTAACTCTTCTGGCTAAC-CCCTTTTTTGCAAACTCTTCTAGCTA-A
** *
7589171 CTTTTTTTTAGTCTAACTCTTCTGGCTAA-CCCTTTTTTGGCAAACTCTTCTGGCTAA
1 CTCCTTTTTAGTCTAACTCTTCTGGCTAACCCCTTTTTT-GCAAACTCTTCTAGCTAA
* *
7589228 CTCCTTTTTAG-C-AACTCATCAGGCTAACTCCCTTTTTT
1 CTCCTTTTTAGTCTAACTCTTCTGGCTAAC-CCCTTTTTT
7589266 CGTTAGCTCT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
55 13 0.16
56 1 0.01
57 26 0.33
58 23 0.29
59 16 0.20
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (57 bp):
CTCCTTTTTAGTCTAACTCTTCTGGCTAACCCCTTTTTTGCAAACTCTTCTAGCTAA
Found at i:7589243 original size:27 final size:28
Alignment explanation
Indices: 7589137--7589264 Score: 109
Period size: 28 Copynumber: 4.5 Consensus size: 28
7589127 ACTATTCTTA
*
7589137 CTAACTCCCATTTTT-GCAAACTCTTCTAG
1 CTAACT-CC-TTTTTAGCAAACTCTTCTGG
* ** *
7589166 CTAGCCTTTTTTTTAGTCTAACTCTTCTGG
1 CTA-ACTCCTTTTTAG-CAAACTCTTCTGG
*
7589196 CTAAC-CCTTTTTTGGCAAACTCTTCTGG
1 CTAACTCC-TTTTTAGCAAACTCTTCTGG
* *
7589224 CTAACTCCTTTTTAGC-AACTCATCAGG
1 CTAACTCCTTTTTAGCAAACTCTTCTGG
7589251 CTAACTCCCTTTTT
1 CTAACT-CCTTTTT
7589265 TCGTTAGCTC
Statistics
Matches: 80, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
27 15 0.19
28 36 0.45
29 13 0.16
30 16 0.20
ACGTcount: A:0.20, C:0.29, G:0.10, T:0.41
Consensus pattern (28 bp):
CTAACTCCTTTTTAGCAAACTCTTCTGG
Found at i:7589511 original size:18 final size:18
Alignment explanation
Indices: 7589480--7589514 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7589470 GGCTAACTAT
**
7589480 TTTGGCTATGTCTTTTTC
1 TTTGGCTAACTCTTTTTC
7589498 TTTGGCTAACTCTTTTT
1 TTTGGCTAACTCTTTTT
7589515 GCTAGTTACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.17, G:0.14, T:0.60
Consensus pattern (18 bp):
TTTGGCTAACTCTTTTTC
Found at i:7592767 original size:34 final size:34
Alignment explanation
Indices: 7592729--7592810 Score: 155
Period size: 34 Copynumber: 2.4 Consensus size: 34
7592719 TTTTAGTATT
7592729 TAAGTTTAAAATTGATCGTGCACAATTATATTAG
1 TAAGTTTAAAATTGATCGTGCACAATTATATTAG
7592763 TAAGTTTAAAATTGATCGTGCACAATTATATTAG
1 TAAGTTTAAAATTGATCGTGCACAATTATATTAG
7592797 TAAGTTTCAAAATT
1 TAAGTTT-AAAATT
7592811 TTATAATGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 41 0.87
35 6 0.13
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (34 bp):
TAAGTTTAAAATTGATCGTGCACAATTATATTAG
Found at i:7592914 original size:11 final size:11
Alignment explanation
Indices: 7592898--7592922 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7592888 TTATTTAGAC
7592898 AATCCATTTAT
1 AATCCATTTAT
7592909 AATCCATTTAT
1 AATCCATTTAT
7592920 AAT
1 AAT
7592923 AGTTCGATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (11 bp):
AATCCATTTAT
Found at i:7593468 original size:6 final size:6
Alignment explanation
Indices: 7593457--7593484 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7593447 TAATATTATG
7593457 ATAAAT ATAAAT ATAAAT ATAAAT ATAA
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAA
7593485 CAAAATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATAAAT
Found at i:7594776 original size:13 final size:13
Alignment explanation
Indices: 7594758--7594788 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7594748 GTTATGTTGT
*
7594758 TAGCAGTAGTTAC
1 TAGCAGCAGTTAC
7594771 TAGCAGCAGTTAC
1 TAGCAGCAGTTAC
7594784 TAGCA
1 TAGCA
7594789 ACAGCTAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (13 bp):
TAGCAGCAGTTAC
Found at i:7602225 original size:30 final size:31
Alignment explanation
Indices: 7602189--7602250 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
7602179 TTAATAACCT
7602189 AGTGACTTAAAT-AAAATTTTTGAATAGTTC
1 AGTGACTTAAATGAAAATTTTTGAATAGTTC
*
7602219 AGTGACTTAAATGAAAATTTTTTAATAGTTC
1 AGTGACTTAAATGAAAATTTTTGAATAGTTC
7602250 A
1 A
7602251 ATGATCAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 12 0.40
31 18 0.60
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (31 bp):
AGTGACTTAAATGAAAATTTTTGAATAGTTC
Found at i:7602271 original size:31 final size:31
Alignment explanation
Indices: 7602191--7602295 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 31
7602181 AATAACCTAG
* * *
7602191 TGACTTAAAT-AAAATTTTTGAATAGTTCAG
1 TGACTCAAATGAAAATTTTTTAATAGTTCAA
*
7602221 TGACTTAAATGAAAATTTTTTAATAGTTCAA
1 TGACTCAAATGAAAATTTTTTAATAGTTCAA
* * *
7602252 TGA-TCAAATTATAAGTTTTTT--TAGTTAAA
1 TGACTCAAATGA-AAATTTTTTAATAGTTCAA
* *
7602281 TGACTAAAATAAAAA
1 TGACTCAAATGAAAA
7602296 CTTGCCCATT
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
29 12 0.19
30 22 0.35
31 29 0.46
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (31 bp):
TGACTCAAATGAAAATTTTTTAATAGTTCAA
Found at i:7604501 original size:18 final size:17
Alignment explanation
Indices: 7604478--7604521 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
7604468 GGTTTTAAAT
*
7604478 TTAAATTTTTTGAAAAAC
1 TTAAATTGTTTG-AAAAC
*
7604496 TTAAATAGTTTGAAAAC
1 TTAAATTGTTTGAAAAC
7604513 TTAAATTGT
1 TTAAATTGT
7604522 GAAAGCTAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (17 bp):
TTAAATTGTTTGAAAAC
Found at i:7605485 original size:20 final size:20
Alignment explanation
Indices: 7605471--7605508 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7605461 TTAAAATAGT
*
7605471 AATTT-AGTAAATAAAAGAA
1 AATTTAAGTAAATAAAATAA
7605490 AATTTAAGTAAATAAAATA
1 AATTTAAGTAAATAAAATA
7605509 CAAAAGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (20 bp):
AATTTAAGTAAATAAAATAA
Found at i:7605880 original size:101 final size:101
Alignment explanation
Indices: 7605705--7605907 Score: 361
Period size: 101 Copynumber: 2.0 Consensus size: 101
7605695 TGTTAAAGGT
* * *
7605705 TGAGGGACTTGCCATGGTTGTTTTTGAATATGTTTTGAAGTTATTTGATAGATTATTAATTTTGG
1 TGAGGGACTTGACATGGTTGTTTTTGAATATGTTTTGAAGTTATTTAATAGATTATTAATCTTGG
7605770 TTGTTAAACAAACTTGTTTTGTTAAGTGATTTTTGA
66 TTGTTAAACAAACTTGTTTTGTTAAGTGATTTTTGA
* *
7605806 TGAGGGATTTGACATGGTTGTTTTTTAATATGTTTTGAAGTTATTTAATAGATTATTAATCTTGG
1 TGAGGGACTTGACATGGTTGTTTTTGAATATGTTTTGAAGTTATTTAATAGATTATTAATCTTGG
7605871 TTGTTAAACAAACTTGTTTTGTTAAGTGATTTTTGA
66 TTGTTAAACAAACTTGTTTTGTTAAGTGATTTTTGA
7605907 T
1 T
7605908 TAATTTTGAA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 97 1.00
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.49
Consensus pattern (101 bp):
TGAGGGACTTGACATGGTTGTTTTTGAATATGTTTTGAAGTTATTTAATAGATTATTAATCTTGG
TTGTTAAACAAACTTGTTTTGTTAAGTGATTTTTGA
Found at i:7607959 original size:45 final size:45
Alignment explanation
Indices: 7607896--7608031 Score: 182
Period size: 45 Copynumber: 3.0 Consensus size: 45
7607886 GTATGAGCAA
* * *
7607896 TTTATCTACACCGTTGAGTGGTTTACCCACACCATATTAGCAACT
1 TTTATCTGCACCGATGAGTGGTTTATCCACACCATATTAGCAACT
* * *
7607941 TTTATCTGCACCAATGAGTGGTTTATCCACACCGTATTAGCAGCT
1 TTTATCTGCACCGATGAGTGGTTTATCCACACCATATTAGCAACT
* * * *
7607986 TTTATCTGCACCGATGAGTGGTTCATCCACACTATACTAACAACT
1 TTTATCTGCACCGATGAGTGGTTTATCCACACCATATTAGCAACT
7608031 T
1 T
7608032 GTCTGCAAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 78 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (45 bp):
TTTATCTGCACCGATGAGTGGTTTATCCACACCATATTAGCAACT
Found at i:7614335 original size:21 final size:23
Alignment explanation
Indices: 7614309--7614354 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7614299 TAAAGGGTAT
*
7614309 TTAC-AAATTAAATC-TCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
*
7614330 TTACAAAATCATATCTTCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
7614353 TT
1 TT
7614355 TCATATCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (23 bp):
TTACAAAATCAAATCTTCTAAGA
Found at i:7614353 original size:23 final size:22
Alignment explanation
Indices: 7614309--7614367 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
7614299 TAAAGGGTAT
* *
7614309 TTACAAATTAAATC-TCTAAGA
1 TTACAAATCATATCTTCTAAGA
7614330 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATCTTCTAAGA
* *
7614353 TTTCATATCATATCT
1 TTACAAATCATATCT
7614368 AAGATTGCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 4 0.12
22 18 0.56
23 10 0.31
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.39
Consensus pattern (22 bp):
TTACAAATCATATCTTCTAAGA
Found at i:7614370 original size:19 final size:17
Alignment explanation
Indices: 7614338--7614373 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
7614328 GATTACAAAA
7614338 TCATATCTTCTAAGATT
1 TCATATCTTCTAAGATT
7614355 TCATATCATATCTAAGATT
1 TCATATC-T-TCTAAGATT
7614374 GCCTATCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 1 0.06
19 9 0.53
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (17 bp):
TCATATCTTCTAAGATT
Found at i:7615032 original size:131 final size:131
Alignment explanation
Indices: 7614827--7615210 Score: 511
Period size: 131 Copynumber: 2.9 Consensus size: 131
7614817 CACTGCAACA
* * * * *
7614827 TCAGGGAGATAAGACTGGTGGCTTAAATTTGCTTCCCTACTACCTCGGGAAGATAAGACTCGCCT
1 TCAGGAAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCG
* *
7614892 TCTTTGATCTGCTCCACTACTTG-TTAAGGGGACAGGATATACAATCTTCAACCTACCCCACTAC
66 TCTTTGATCTGCTCCACTAC-TGCTT-AGGGGATAGGATCTACAATCTTCAACCTACCCCACTAC
7614956 TGC
129 TGC
* * * * *
7614959 TTAGGAAGATAGGACTGGTAGCATAAATCTGCTT-CCTACTACCTCGGGAAGATAAGATTCATCG
1 TCAGGAAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCG
* * * *
7615023 TGTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACAATCTTCAACCTACTCCACTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGG-GATAGGATCTACAATCTTCAACCTACCCCACTACT
*
7615088 GG
130 GC
* * **
7615090 TCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTATCTTAGGAAGATAAGATTCACCG
1 TCAGGAAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCG
* *
7615155 TCTTTGATCTGCTCCACTACTGCTTAGAGAGATAGGATCCACAATCTTCAACCTAC
66 TCTTTGATCTGCTCCACTACTGCTTAG-GGGATAGGATCTACAATCTTCAACCTAC
7615211 TCTACTGCAA
Statistics
Matches: 218, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
130 6 0.03
131 107 0.49
132 104 0.48
133 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (131 bp):
TCAGGAAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCG
TCTTTGATCTGCTCCACTACTGCTTAGGGGATAGGATCTACAATCTTCAACCTACCCCACTACTG
C
Found at i:7615056 original size:44 final size:44
Alignment explanation
Indices: 7615008--7615188 Score: 106
Period size: 44 Copynumber: 4.1 Consensus size: 44
7614998 TACCTCGGGA
*
7615008 AGATAAGATTCATCGTGTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCATCGTGTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
7615052 AGATAGGATCTACAATC---TTCAACCTACTCCACTGCTGGTCAGGG
1 AGATAAGAT-T-C-ATCGTGTTCAATCTGCTCCACTACTGCTTAGGG
* * * *
7615096 AGATAAGA--C-TGGTGGCTTAAATCTGCTTCC-CTACTATCTTAGGA
1 AGATAAGATTCATCGT-G-TTCAATCTGC-TCCACTACT-GCTTAGGG
* * ** *
7615140 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGAG
1 AGATAAGATTCATCGTGTTCAATCTGCTCCACTACTGCTTAGGG
7615184 AGATA
1 AGATA
7615189 GGATCCACAA
Statistics
Matches: 98, Mismatches: 25, Indels: 28
0.65 0.17 0.19
Matches are distributed among these distances:
38 1 0.01
40 1 0.01
43 11 0.11
44 64 0.65
45 14 0.14
46 2 0.02
47 5 0.05
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATTCATCGTGTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:7615190 original size:132 final size:132
Alignment explanation
Indices: 7614805--7615218 Score: 537
Period size: 132 Copynumber: 3.1 Consensus size: 132
7614795 AATTGGTAAG
* ** *
7614805 TTCAACCTGCTCCACTGCAACATCAGGGAGATAAGACTGGTGGCTTAAATTTGCTTCCCTACTAC
1 TTCAACCTACTCCACTGCTGC-TCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTAC
* * * * * *
7614870 CTCGGGAAGATAAGACTCGCCTTCTTTGATCTGCTCCACTACTTG-TTA-AGGGGACAGGATATA
65 CTCGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTAC-TGCTTAGA-GAGATAGGATCTA
7614933 CAATC
128 CAATC
* * * * * * *
7614938 TTCAACCTACCCCACTACTGCTTAGGAAGATAGGACTGGTAGCATAAATCTGCTT-CCTACTACC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACC
* * * *
7615002 TCGGGAAGATAAGATTCATCGTGTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACAA
66 TCGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAGGATCTACAA
7615067 TC
131 TC
* *
7615069 TTCAACCTACTCCACTGCTGGTCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTATC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACC
** *
7615134 TTAGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAGGATCCACAA
66 TCGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAGGATCTACAA
7615199 TC
131 TC
*
7615201 TTCAACCTACTCTACTGC
1 TTCAACCTACTCCACTGC
7615219 AAATTCAGAG
Statistics
Matches: 240, Mismatches: 38, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
130 2 0.01
131 109 0.45
132 113 0.47
133 16 0.07
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (132 bp):
TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACC
TCGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAGGATCTACAA
TC
Found at i:7615326 original size:45 final size:44
Alignment explanation
Indices: 7615277--7615413 Score: 111
Period size: 44 Copynumber: 3.1 Consensus size: 44
7615267 ACAAAAAGAC
7615277 AAGATCTGTTATCTTTAGTCTGCTCCACTGTAACTTCAGGGAGAT
1 AAGAT-TGTTATCTTTAGTCTGCTCCACTGTAACTTCAGGGAGAT
* * * * * *
7615322 AAGATTATTGGT-TTTAATCTGCTCCGCT-TCAACTTTAGAGAGAT
1 AAGATTGTT-ATCTTTAGTCTGCTCCACTGT-AACTTCAGGGAGAT
** * *
7615366 AAGATTTGCCATCTTCAGTCTG-TCCCACTGCAACTTCAGGG-GAT
1 AAGA-TTGTTATCTTTAGTCTGCT-CCACTGTAACTTCAGGGAGAT
7615410 AAGA
1 AAGA
7615414 CTTGCTTTCT
Statistics
Matches: 70, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
43 1 0.01
44 42 0.60
45 27 0.39
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (44 bp):
AAGATTGTTATCTTTAGTCTGCTCCACTGTAACTTCAGGGAGAT
Found at i:7615548 original size:89 final size:89
Alignment explanation
Indices: 7615449--7615881 Score: 428
Period size: 89 Copynumber: 4.9 Consensus size: 89
7615439 ACTTTAATCC
* **
7615449 GCTCCACTGCAACTTCAGGGAGATAGGATTTGTAACTTTAATAAGCTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCCGCTCCACTGCAACTTCAGGGA
*
7615514 GATAAGATTTGCCATCTTCAGTCT
66 GATAAGATTTGCCTTCTTCAGTCT
* * *
7615538 GCTCCACTGCAACTTCAGGGAGTTAAGATTTGTAACTTTAACCCGCTACACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCCGCTCCACTGCAACTTCAGGGA
* *
7615603 GAT-AGAATTATTGGC-T-TT-AATCT
66 GATAAG-A-T-TTGCCTTCTTCAGTCT
* * * * * * * ** *
7615626 GTTCCACTACAAATTTAGGGAGATAAGATTT-TCCATTTTCAGTTTGCCCCACTGCAACTTCAAG
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGT-AACTTT-AATCCGCTCCACTGCAACTTC-AG
* **
7615690 GG-GATAAGACTTGTTTTCTTCAGTCT
63 GGAGATAAGATTTGCCTTCTTCAGTCT
* * * * * * *
7615716 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTGCAACTTTAGGG
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTTAATCCGCTCCACTGCAACTTCAGGG
* * *
7615781 GGATAAGACTTGCTTTCTTCAGTCT
65 AGATAAGATTTGCCTTCTTCAGTCT
* * * *
7615806 CCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCACTGTAACTTCAAGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCCGCTCCACTGCAACTTCAGGGA
*
7615871 GATAGGATTTG
66 GATAAGATTTG
7615882 TGGTTTCACC
Statistics
Matches: 280, Mismatches: 51, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
87 4 0.01
88 37 0.13
89 122 0.44
90 111 0.40
91 6 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (89 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCCGCTCCACTGCAACTTCAGGGA
GATAAGATTTGCCTTCTTCAGTCT
Found at i:7615557 original size:45 final size:45
Alignment explanation
Indices: 7615449--7615881 Score: 390
Period size: 45 Copynumber: 9.7 Consensus size: 45
7615439 ACTTTAATCC
* * * * **
7615449 GCTCCACTGCAACTTCAGGGAGATAGGATTTG-TAACTTTAATAA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
*
7615493 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
* * * ** *
7615538 GCTCCACTGCAACTTCAGGGAGTTAAGATTTG-TAACTTTAACCC
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
* * ** ** * *
7615582 GCTACACTGCAACTTCAGGGAGAT-AGAATTATTGGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
* * * * * * * *
7615626 GTTCCACTACAAATTTAGGGAGATAAGATTTTCCATTTTCAGTTT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
* * * *
7615671 GCCCCACTGCAACTTCAAGGG-GATAAGACTTGTTTTCTTCAGTCT
1 GCTCCACTGCAACTTC-AGGGAGATAAGATTTGCTATCTTCAGTCT
*
7615716 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
* * * * *
7615761 GCCCCACTGCAACTTTAGGGGGATAAGACTTGCTTTCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
* * * * * *
7615806 CCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
* * *
7615850 GCTCCACTGTAACTTCAAGGAGATAGGATTTG
1 GCTCCACTGCAACTTCAGGGAGATAAGATTTG
7615882 TGGTTTCACC
Statistics
Matches: 310, Mismatches: 74, Indels: 10
0.79 0.19 0.03
Matches are distributed among these distances:
43 5 0.02
44 124 0.40
45 177 0.57
46 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
Found at i:7623041 original size:23 final size:22
Alignment explanation
Indices: 7622998--7623055 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7622988 AAAGGGTATC
* *
7622998 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7623019 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
7623042 TTCATATCATATCT
1 TACAAATCATATCT
7623056 AAACTCCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7623241 original size:238 final size:238
Alignment explanation
Indices: 7622823--7623295 Score: 919
Period size: 238 Copynumber: 2.0 Consensus size: 238
7622813 TAAGGACAAG
7622823 CCACAGAAAATAAGAACAGAAGAGAGGGAGAAATTTGAGTGGATACTCTTAAGAATTATTATTGC
1 CCACAGAAAATAAGAACAGAAGAGAGGGAGAAATTTGAGTGGATACTCTTAAGAATTATTATTGC
7622888 TCCAAACTCCAGTGTTTTACAATGAAGGGAGGGACCTCTATTTATAGTTGAGCCTCCCCAAATCC
66 TCCAAACTCCAGTGTTTTACAATGAAGGGAGGGACCTCTATTTATAGTTGAGCCTCCCCAAATCC
7622953 AACAGTACAGATCAATTACATCAACGACTAAGATTAAAGGGTATCTACAAATTAAATCTCTAAGA
131 AACAGTACAGATCAATTACATCAACGACTAAGATTAAAGGGTATCTACAAATTAAATCTCTAAGA
7623018 TTACAAAATCATATCTTCTAAGATTTCATATCATATCTAAACT
196 TTACAAAATCATATCTTCTAAGATTTCATATCATATCTAAACT
* *
7623061 CCACAGAAAATAAGAGCAGAAGAGAGGGAGAAATTTGAGTGGATGCTCTTAAGAATTATTATTGC
1 CCACAGAAAATAAGAACAGAAGAGAGGGAGAAATTTGAGTGGATACTCTTAAGAATTATTATTGC
*
7623126 TCTAAACTCCAGTGTTTTACAATGAAGGGAGGGACCTCTATTTATAGTTGAGCCTCCCCAAATCC
66 TCCAAACTCCAGTGTTTTACAATGAAGGGAGGGACCTCTATTTATAGTTGAGCCTCCCCAAATCC
7623191 AACAGTACAGATCAATTACATCAACGACTAAGATTAAAGGGTATCTACAAATTAAATCTCTAAGA
131 AACAGTACAGATCAATTACATCAACGACTAAGATTAAAGGGTATCTACAAATTAAATCTCTAAGA
7623256 TTACAAAATCATATCTTCTAAGATTTCATATCATATCTAA
196 TTACAAAATCATATCTTCTAAGATTTCATATCATATCTAA
7623296 GATTGCCTAT
Statistics
Matches: 232, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
238 232 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (238 bp):
CCACAGAAAATAAGAACAGAAGAGAGGGAGAAATTTGAGTGGATACTCTTAAGAATTATTATTGC
TCCAAACTCCAGTGTTTTACAATGAAGGGAGGGACCTCTATTTATAGTTGAGCCTCCCCAAATCC
AACAGTACAGATCAATTACATCAACGACTAAGATTAAAGGGTATCTACAAATTAAATCTCTAAGA
TTACAAAATCATATCTTCTAAGATTTCATATCATATCTAAACT
Found at i:7623279 original size:23 final size:22
Alignment explanation
Indices: 7623236--7623293 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7623226 AAAGGGTATC
* *
7623236 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7623257 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
7623280 TTCATATCATATCT
1 TACAAATCATATCT
7623294 AAGATTGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7623296 original size:19 final size:17
Alignment explanation
Indices: 7623264--7623299 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
7623254 GATTACAAAA
7623264 TCATATCTTCTAAGATT
1 TCATATCTTCTAAGATT
7623281 TCATATCATATCTAAGATT
1 TCATATC-T-TCTAAGATT
7623300 GCCTATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 1 0.06
19 9 0.53
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (17 bp):
TCATATCTTCTAAGATT
Found at i:7626701 original size:20 final size:18
Alignment explanation
Indices: 7626663--7626701 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7626653 ATGTTTTGTA
*
7626663 TTGAGATTTTTGGTGAAT
1 TTGAGATTTTGGGTGAAT
7626681 TTGAGTATTTTGGGTTGAAT
1 TTGAG-ATTTTGGG-TGAAT
7626701 T
1 T
7626702 GAAAATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (18 bp):
TTGAGATTTTGGGTGAAT
Found at i:7627334 original size:42 final size:42
Alignment explanation
Indices: 7627230--7627386 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 42
7627220 TGTTATATCA
*
7627230 TGTAAGACCACATCTGGGACATTGGCATCG-ATTTGAGATTTACG
1 TGTAAGACCATATCTGGGACATTGGCATCGTATTT--GA-TTACG
* * * *
7627274 TGTAAGACCATGTTTGGGACATTGGCGTCGTATATGATTACG
1 TGTAAGACCATATCTGGGACATTGGCATCGTATTTGATTACG
* * * *
7627316 TGTAAGTCCCTATCTGGGACAGTGGCATCGTTATTTGATTACA
1 TGTAAGACCATATCTGGGACATTGGCATCG-TATTTGATTACG
** *
7627359 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATATCTGGGACATTGGCAT
7627387 TGTACGAGCC
Statistics
Matches: 92, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
42 29 0.32
43 34 0.37
44 26 0.28
45 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATTGGCATCGTATTTGATTACG
Found at i:7642919 original size:35 final size:35
Alignment explanation
Indices: 7642877--7642949 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
7642867 AGTATAAATA
*** *
7642877 TTTTATTGTTACTAGTATTCTTAATTTGAATATTT
1 TTTTATTGTTACTAGTATAAATAAATTGAATATTT
7642912 TTTTATTGTTACTAGTATAAATAAATTGAATATTT
1 TTTTATTGTTACTAGTATAAATAAATTGAATATTT
7642947 TTT
1 TTT
7642950 AGGATCTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (35 bp):
TTTTATTGTTACTAGTATAAATAAATTGAATATTT
Found at i:7643978 original size:43 final size:43
Alignment explanation
Indices: 7643923--7644009 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
7643913 AAATATAATT
*
7643923 AAATGCAAGAAAGTTAGTCAGATGTAATGAGTTATTAAATGTG
1 AAATGCAAGAAAGTTAGGCAGATGTAATGAGTTATTAAATGTG
* * *
7643966 AAATGCATGAAAGTTAGGCAGATTTAATGTGTTATTAAATGTG
1 AAATGCAAGAAAGTTAGGCAGATGTAATGAGTTATTAAATGTG
7644009 A
1 A
7644010 GATAAAAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (43 bp):
AAATGCAAGAAAGTTAGGCAGATGTAATGAGTTATTAAATGTG
Found at i:7648162 original size:43 final size:43
Alignment explanation
Indices: 7648101--7648329 Score: 271
Period size: 43 Copynumber: 5.3 Consensus size: 43
7648091 GTTTTTAGAA
* * * * * *
7648101 ACAAACACCGCTGTAGAACAAGACCTTTAGCGACGCTTTTCAC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCC
* * *
7648144 ACAAACGCCGCTATAGAACAAGACCTTTAGC-AGCGCTTTTCCC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGA-CGCTTTTCCC
* * * *
7648187 ACAAACGTCGCTAAAGATCATGACTTTTAACGACACTTTTCCC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCC
* *
7648230 ACAAACGTCGCTATAGATCATCACTTTTAGCGACGCTTTTCCC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCC
* * * *
7648273 ACAAACGTCACTATAGATCATCACTTTTAGCGACACTTTTCCC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCC
7648316 ACAAACGCCGCTAT
1 ACAAACGCCGCTAT
7648330 TAAAAAAATA
Statistics
Matches: 166, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
42 1 0.01
43 164 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.25
Consensus pattern (43 bp):
ACAAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCC
Done.