Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 3 of 126
Found at i:598110 original size:27 final size:27
Alignment explanation
Indices: 598091--598180 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 27
598081 ATAAAAATTG
598091 TAAAACAATTATAAAATATATAGAAATA
1 TAAAA-AATTATAAAATATATAGAAATA
* *
598119 TAAAAAATTATAAAACTTTATA-AAGTCA
1 TAAAAAATTATAAAA-TATATAGAAAT-A
* *
598147 TAAGAAAATTATACAAAATGTAAAGAAATA
1 TAA-AAAATTAT--AAAATATATAGAAATA
598177 TAAA
1 TAAA
598181 TCTCATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
27 13 0.25
28 14 0.27
29 9 0.18
30 8 0.16
31 7 0.14
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (27 bp):
TAAAAAATTATAAAATATATAGAAATA
Found at i:598140 original size:20 final size:20
Alignment explanation
Indices: 598072--598142 Score: 53
Period size: 20 Copynumber: 3.7 Consensus size: 20
598062 ATAAAAATCG
* *
598072 TAAAATTTTAT-AAAAATTG
1 TAAAACTTTATAAAAAATTA
* *
598091 TAAAACAATTATAAAATA-TA
1 TAAAAC-TTTATAAAAAATTA
598111 TAGAAA---TATAAAAAATTA
1 TA-AAACTTTATAAAAAATTA
598129 TAAAACTTTATAAA
1 TAAAACTTTATAAA
598143 GTCATAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
17 11 0.28
18 4 0.10
19 5 0.12
20 13 0.32
21 7 0.17
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
TAAAACTTTATAAAAAATTA
Found at i:598406 original size:37 final size:37
Alignment explanation
Indices: 598334--598408 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
598324 CTAGAGATCA
**
598334 TTATTTTTTTATAATTTTTATAAAATTTTACAATTTT
1 TTATTTTTTTATAATTTTTATAAAAAATTACAATTTT
598371 TTATTTTTTTA-AGATTTTTATAAAAAATT-CTAATTTT
1 TTATTTTTTTATA-ATTTTTATAAAAAATTAC-AATTTT
598408 T
1 T
598409 AATAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 2 0.06
37 32 0.94
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (37 bp):
TTATTTTTTTATAATTTTTATAAAAAATTACAATTTT
Found at i:598452 original size:47 final size:45
Alignment explanation
Indices: 598369--598498 Score: 127
Period size: 46 Copynumber: 2.8 Consensus size: 45
598359 TTTTACAATT
* * * *
598369 TTTTATTTTTTTAAGATTTTTATAAAAAATT-CTAATTTTTAATAAA
1 TTTTATTTTTTT-ATATTTTTATTAAAATTTAATAATTTTT-ATAAA
*
598415 TTTTATATTTTTTATATTTTTATTAAAATTTAATAATTTTTCTAAA
1 TTTTAT-TTTTTTATATTTTTATTAAAATTTAATAATTTTTATAAA
* **
598461 TTTTATTGTTTTTTATAATTTTTTTTAATTTTTAATAA
1 TTTTA-T-TTTTTTAT-ATTTTTATTAAAATTTAATAA
598499 GAGCATGGGT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 30 0.42
47 23 0.32
48 18 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (45 bp):
TTTTATTTTTTTATATTTTTATTAAAATTTAATAATTTTTATAAA
Found at i:598482 original size:10 final size:10
Alignment explanation
Indices: 598338--598498 Score: 58
Period size: 10 Copynumber: 17.0 Consensus size: 10
598328 AGATCATTAT
598338 TTTTTTATAA
1 TTTTTTATAA
598348 -TTTTTATAA
1 TTTTTTATAA
** *
598357 AATTTTACAA
1 TTTTTTATAA
598367 TTTTTTAT--
1 TTTTTTATAA
598375 TTTTTTA-AGA
1 TTTTTTATA-A
598385 -TTTTTATAA
1 TTTTTTATAA
**** *
598394 AAAATTCTAA
1 TTTTTTATAA
*
598404 TTTTTAATAA
1 TTTTTTATAA
*
598414 -ATTTTAT-A
1 TTTTTTATAA
598422 TTTTTTAT-A
1 TTTTTTATAA
598431 -TTTTTATTAA
1 TTTTTTA-TAA
** *
598441 AATTTAATAA
1 TTTTTTATAA
598451 TTTTTCTA-AA
1 TTTTT-TATAA
**
598461 --TTTTATTG
1 TTTTTTATAA
598469 TTTTTTATAA
1 TTTTTTATAA
*
598479 TTTTTTTTAA
1 TTTTTTATAA
*
598489 TTTTTAATAA
1 TTTTTTATAA
598499 GAGCATGGGT
Statistics
Matches: 107, Mismatches: 30, Indels: 28
0.65 0.18 0.17
Matches are distributed among these distances:
7 2 0.02
8 17 0.16
9 29 0.27
10 54 0.50
11 5 0.05
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:599053 original size:9 final size:10
Alignment explanation
Indices: 599007--599068 Score: 61
Period size: 11 Copynumber: 5.8 Consensus size: 10
598997 CACAAAAGTC
599007 CTCTCATAATT
1 CTCTCA-AATT
*
599018 CTTTCTAAATT
1 CTCTC-AAATT
599029 CTCTCCAAATT
1 CTCT-CAAATT
599040 CTCTCAAATTT
1 CTCTCAAA-TT
*
599051 CTCTCATATT
1 CTCTCAAATT
*
599061 TTCTCAAA
1 CTCTCAAA
599069 GCTCTCTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
10 12 0.28
11 29 0.67
12 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:599065 original size:21 final size:21
Alignment explanation
Indices: 599019--599068 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
599009 CTCATAATTC
599019 TTTCT-AAATTCTCTCCAAAT
1 TTTCTCAAATTCTCTCCAAAT
* *
599039 TCTCTCAAATT-TCTCTCATAT
1 TTTCTCAAATTCTCTC-CAAAT
599060 TTTCTCAAA
1 TTTCTCAAA
599069 GCTCTCTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (21 bp):
TTTCTCAAATTCTCTCCAAAT
Found at i:600235 original size:7 final size:7
Alignment explanation
Indices: 600223--600248 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
600213 TAAAATAGTC
600223 GTATTTA
1 GTATTTA
600230 GTATTTA
1 GTATTTA
600237 GTATTTA
1 GTATTTA
600244 GTATT
1 GTATT
600249 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:600888 original size:18 final size:18
Alignment explanation
Indices: 600865--600902 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
600855 TGCTAGGTGC
* *
600865 GTATCCTAGCTCTTATAT
1 GTATCCTAACCCTTATAT
600883 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
600901 GT
1 GT
600903 TTCATTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:605015 original size:47 final size:47
Alignment explanation
Indices: 604947--605208 Score: 310
Period size: 47 Copynumber: 5.6 Consensus size: 47
604937 ATCCATAAGT
604947 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
604994 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
605040 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
605087 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
605133 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
605180 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
605209 CATTCGCATC
Statistics
Matches: 181, Mismatches: 16, Indels: 36
0.78 0.07 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 2 0.01
45 4 0.02
46 58 0.32
47 87 0.48
48 4 0.02
49 2 0.01
50 8 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:605016 original size:93 final size:93
Alignment explanation
Indices: 604901--605257 Score: 687
Period size: 93 Copynumber: 3.8 Consensus size: 93
604891 GCCCATAAGT
* * *
604901 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
604966 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
604994 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
605059 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
605087 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
605152 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
605180 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
605245 CGAGTTCGGATGC
66 CGAGTTCGGATGC
605258 TCAACCATCC
Statistics
Matches: 261, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 261 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:605254 original size:46 final size:46
Alignment explanation
Indices: 604893--605254 Score: 370
Period size: 46 Copynumber: 7.8 Consensus size: 46
604883 TGTAACCCGC
* * *
604893 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
604939 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
604989 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
605032 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
605082 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
605125 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
605175 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
605218 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
605255 TGCTCAACCA
Statistics
Matches: 262, Mismatches: 27, Indels: 54
0.76 0.08 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.05
44 3 0.01
45 6 0.02
46 122 0.47
47 87 0.33
48 6 0.02
49 3 0.01
50 11 0.04
51 6 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:612724 original size:46 final size:46
Alignment explanation
Indices: 612657--613476 Score: 1504
Period size: 46 Copynumber: 17.8 Consensus size: 46
612647 TGTAACCCGC
* * * *
612657 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
612703 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
612749 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
612795 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
612841 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
612887 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
612933 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
612979 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613025 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613071 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613117 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613163 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613209 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613255 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613301 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
613347 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
613397 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
613440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
613477 TGCTCAACCA
Statistics
Matches: 755, Mismatches: 10, Indels: 18
0.96 0.01 0.02
Matches are distributed among these distances:
42 2 0.00
43 4 0.01
44 2 0.00
45 2 0.00
46 706 0.94
47 29 0.04
48 2 0.00
49 2 0.00
50 4 0.01
51 2 0.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:615449 original size:39 final size:39
Alignment explanation
Indices: 615406--615536 Score: 174
Period size: 39 Copynumber: 3.3 Consensus size: 39
615396 GGTCTTTAAC
* *
615406 CCGGATATTTTTCCAGTAAGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCAAGTAGCCTGCGGACCTCATGT
* * *
615445 CCGGATATATTTCTAGCATA-TAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCA-AGTAGCCTGCGGACCTCATGT
* *
615484 CCGGATATTTTTCCAGCATGTAGCCTGCAGACCTCATGT
1 CCGGATATTTTTCCAGCAAGTAGCCTGCGGACCTCATGT
615523 CCGGATATATTTTC
1 CCGGATAT-TTTTC
615537 AATCTTATAC
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 73 0.92
40 6 0.08
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCAAGTAGCCTGCGGACCTCATGT
Found at i:621660 original size:64 final size:66
Alignment explanation
Indices: 621580--621709 Score: 183
Period size: 67 Copynumber: 2.0 Consensus size: 66
621570 AGACATTATG
* * * *
621580 ATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGCACACCATGTAGACAAGAGAGCTACGAGATA
621643 T
66 T
* *
621644 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGCACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGCGTGATACTA-GTGAAGCACACCATGTAGACAAGAGAGCTACGAGAT
621709 A
65 A
621710 AATTGGCTAG
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
64 25 0.44
66 2 0.04
67 30 0.53
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGCACACCATGTAGACAAGAGAGCTACGAGATA
T
Found at i:623898 original size:150 final size:150
Alignment explanation
Indices: 623627--623927 Score: 602
Period size: 150 Copynumber: 2.0 Consensus size: 150
623617 TTCTTTTAGA
623627 AGTTCCAAGTTTTTTTAAAAGAAACCGAAATCCACGGTTGAGTTTTGCAACCTGGCTCTGGTACC
1 AGTTCCAAGTTTTTTTAAAAGAAACCGAAATCCACGGTTGAGTTTTGCAACCTGGCTCTGGTACC
623692 ACTAAATGTAACACCCCAAACCCGGCCTAGACGTTATGGCCGAATCTGGTGATGTCACATTGAAG
66 ACTAAATGTAACACCCCAAACCCGGCCTAGACGTTATGGCCGAATCTGGTGATGTCACATTGAAG
623757 TGTTTTTGGTAAAATGTGAT
131 TGTTTTTGGTAAAATGTGAT
623777 AGTTCCAAGTTTTTTTAAAAGAAACCGAAATCCACGGTTGAGTTTTGCAACCTGGCTCTGGTACC
1 AGTTCCAAGTTTTTTTAAAAGAAACCGAAATCCACGGTTGAGTTTTGCAACCTGGCTCTGGTACC
623842 ACTAAATGTAACACCCCAAACCCGGCCTAGACGTTATGGCCGAATCTGGTGATGTCACATTGAAG
66 ACTAAATGTAACACCCCAAACCCGGCCTAGACGTTATGGCCGAATCTGGTGATGTCACATTGAAG
623907 TGTTTTTGGTAAAATGTGAT
131 TGTTTTTGGTAAAATGTGAT
623927 A
1 A
623928 TCGAAGGAAA
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 151 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (150 bp):
AGTTCCAAGTTTTTTTAAAAGAAACCGAAATCCACGGTTGAGTTTTGCAACCTGGCTCTGGTACC
ACTAAATGTAACACCCCAAACCCGGCCTAGACGTTATGGCCGAATCTGGTGATGTCACATTGAAG
TGTTTTTGGTAAAATGTGAT
Found at i:625020 original size:27 final size:26
Alignment explanation
Indices: 624990--625166 Score: 138
Period size: 27 Copynumber: 6.5 Consensus size: 26
624980 AAATTGTACA
* *
624990 GCACTAAGTGTGCGATTCTACTTTGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
625017 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
625044 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
625071 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA--TTGACTATGTT
* * *
625099 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * * *
625126 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
625153 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
625167 GACTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:625113 original size:55 final size:54
Alignment explanation
Indices: 625017--625166 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
625007 CTACTTTGTT
** *
625017 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACGCG
* * ** *
625071 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCACGCG
* * * *
625126 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
625167 GACTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 37 0.45
55 44 0.54
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:625130 original size:82 final size:81
Alignment explanation
Indices: 624990--625145 Score: 199
Period size: 82 Copynumber: 1.9 Consensus size: 81
624980 AAATTGTACA
* * * *
624990 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
625055 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
625071 GCACTAAGTGTGCGAGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGCGA-TTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
625134 TGTGCGAGTTGA
63 TGTGCGAATTGA
625146 TTATATAGCA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:625157 original size:82 final size:81
Alignment explanation
Indices: 624986--625166 Score: 195
Period size: 82 Copynumber: 2.2 Consensus size: 81
624976 GATTAAATTG
* * *
624986 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
625051 GTGTGCGAATTGACCA
66 ATGTGCGAATTGACCA
* * ** *
625067 TGCGGCACTAAGTGTGCGAGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCAC
1 TACAGCACTAAGTGTGCGA-TTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
625130 TAAATGTGCGAGTTGATTA
63 TAAATGTGCGAATTGACCA
* *
625149 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
625167 GACTCAATAT
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
81 19 0.23
82 62 0.77
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
ATGTGCGAATTGACCA
Found at i:633176 original size:82 final size:81
Alignment explanation
Indices: 633060--633215 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
633050 AAATTGTACA
* * * *
633060 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
633124 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
633141 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
633206 TGCGAGTTGA
65 TGCGAATTGA
633216 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:633183 original size:55 final size:52
Alignment explanation
Indices: 633059--633212 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
633049 TAAATTGTAC
* *
633059 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
633112 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
633167 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
633213 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:633217 original size:27 final size:27
Alignment explanation
Indices: 633060--633215 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
633050 AAATTGTACA
*
633060 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
633087 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
633114 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
633141 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
633169 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
633196 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
633216 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:633226 original size:27 final size:27
Alignment explanation
Indices: 633052--633236 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
633042 GCGGGATTAA
*
633052 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
633079 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
633106 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
633133 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
633161 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
633188 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
633215 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
633237 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:633227 original size:82 final size:81
Alignment explanation
Indices: 633052--633236 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
633042 GCGGGATTAA
* * * *
633052 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
633117 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
633133 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
633197 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
633215 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
633237 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:634530 original size:19 final size:19
Alignment explanation
Indices: 634506--634544 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
634496 TCATTGTTAA
634506 TTGGCCAAATGTGTTGGCT
1 TTGGCCAAATGTGTTGGCT
634525 TTGGCCAAATGTGTTGGCT
1 TTGGCCAAATGTGTTGGCT
634544 T
1 T
634545 ACTTTAGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38
Consensus pattern (19 bp):
TTGGCCAAATGTGTTGGCT
Found at i:642171 original size:40 final size:40
Alignment explanation
Indices: 642116--642387 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
642106 ATTTGAATAC
*
642116 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
642156 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
642196 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
642238 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
642278 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
642318 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * * *
642358 ACCCGGGTTAAGACCCAAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
642388 TTGTGGTTAT
Statistics
Matches: 216, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 176 0.81
42 40 0.19
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:642333 original size:122 final size:122
Alignment explanation
Indices: 642108--642387 Score: 449
Period size: 122 Copynumber: 2.3 Consensus size: 122
642098 GCATGAGCAT
*
642108 TTGA-ATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
* * *
642172 GAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
*
642229 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
*
642294 GAAGGCAATTGTGCAAGTTGATTTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
* * * *
642351 TTG-C-TATACCCGGGTTAAGACCCAAAGGCAATTGTGC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
642388 TTGTGGTTAT
Statistics
Matches: 148, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
120 29 0.20
121 5 0.03
122 114 0.77
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (122 bp):
TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
Found at i:646151 original size:110 final size:110
Alignment explanation
Indices: 645958--646175 Score: 409
Period size: 110 Copynumber: 2.0 Consensus size: 110
645948 TTTTCATCTT
645958 GTTTTTAATGATTTCTATGTTTCTAAAGTTGTTGTAGCTTAATCTAGCTAGCCCGGGGACTAATT
1 GTTTTTAATGATTTCTATGTTTCTAAAGTTGTTGTAGCTTAATCTAGCTAGCCCGGGGACTAATT
646023 TGTAAAACTGCTAAAAGTATAGGGCTTTATCATGAATGTATATTG
66 TGTAAAACTGCTAAAAGTATAGGGCTTTATCATGAATGTATATTG
*
646068 GTTTTTAATGATTTCTATGTTTCTGAAGTTGTTGTAGCTTAATCTAGCTAGCCCGGGGACTAATT
1 GTTTTTAATGATTTCTATGTTTCTAAAGTTGTTGTAGCTTAATCTAGCTAGCCCGGGGACTAATT
* *
646133 TGTAAAACTGTTAAAAGTATAGGGTTTTATCATGAATGTATAT
66 TGTAAAACTGCTAAAAGTATAGGGCTTTATCATGAATGTATAT
646176 ATGTTGTTTT
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 105 1.00
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (110 bp):
GTTTTTAATGATTTCTATGTTTCTAAAGTTGTTGTAGCTTAATCTAGCTAGCCCGGGGACTAATT
TGTAAAACTGCTAAAAGTATAGGGCTTTATCATGAATGTATATTG
Found at i:649899 original size:30 final size:30
Alignment explanation
Indices: 649863--649923 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
649853 ATCAGTCCAC
649863 ACATGCAACACACAAAATCAAATGTTTACT
1 ACATGCAACACACAAAATCAAATGTTTACT
*
649893 ACATGCAACACACAAAATCACATGTTTACT
1 ACATGCAACACACAAAATCAAATGTTTACT
649923 A
1 A
649924 TCTTGTTGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.23
Consensus pattern (30 bp):
ACATGCAACACACAAAATCAAATGTTTACT
Found at i:653023 original size:17 final size:17
Alignment explanation
Indices: 653001--653042 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
652991 TCATTCATCA
653001 TTCATTCAT-TCATTTTC
1 TTCATTC-TCTCATTTTC
653018 TTCATTCTCTCATTTTC
1 TTCATTCTCTCATTTTC
*
653035 TTCTTTCT
1 TTCATTCT
653043 TTCCACACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 1 0.04
17 22 0.96
ACGTcount: A:0.12, C:0.26, G:0.00, T:0.62
Consensus pattern (17 bp):
TTCATTCTCTCATTTTC
Found at i:664168 original size:67 final size:65
Alignment explanation
Indices: 664027--664180 Score: 184
Period size: 67 Copynumber: 2.3 Consensus size: 65
664017 CATCATGTGT
* * * *
664027 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TATGATGTAGCTAGGTCGCATGCGTGATACCAAGTGGACACCATG
664092 TAG
63 TAG
* *
664095 ACAAGAGAGCTACAAGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTAAAGGACACCATG
1 ACAAGAGAGCTACAAGATATGATGTAGCTAGGTCGCATGCGTGATACCAAGT---GGACACCATG
664159 TAG
63 TAG
*
664162 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACAAGATA
664181 AACTGGCTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
64 26 0.34
65 3 0.04
66 1 0.01
67 30 0.39
68 16 0.21
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (65 bp):
ACAAGAGAGCTACAAGATATGATGTAGCTAGGTCGCATGCGTGATACCAAGTGGACACCATGTAG
Found at i:668988 original size:39 final size:39
Alignment explanation
Indices: 668918--669096 Score: 261
Period size: 39 Copynumber: 4.5 Consensus size: 39
668908 ACAAAGCATG
* * *
668918 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
668958 CGGGACTTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
668998 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
669037 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
669076 CGGGACTCAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
669097 TTCTCCATTA
Statistics
Matches: 128, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 107 0.84
40 21 0.16
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:674340 original size:18 final size:18
Alignment explanation
Indices: 674298--674334 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
674288 ACACTTACTG
674298 ACCCATCAGTAGGTTTAT
1 ACCCATCAGTAGGTTTAT
674316 ACCCATCAGTAGGTTTAT
1 ACCCATCAGTAGGTTTAT
674334 A
1 A
674335 GTCATCTCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (18 bp):
ACCCATCAGTAGGTTTAT
Found at i:680415 original size:27 final size:27
Alignment explanation
Indices: 680396--680751 Score: 451
Period size: 27 Copynumber: 13.2 Consensus size: 27
680386 ATTACCAAAA
* * *
680396 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
680423 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
***
680450 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
**
680477 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
680504 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * ***
680531 TACCCTAGATTTATAAAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
680558 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
680585 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
680612 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
680639 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
680666 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
680693 TACCCTCGATTTGTAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
680720 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
680747 TACCC
1 TACCC
680752 CTAGGGTGTT
Statistics
Matches: 295, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 295 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:680486 original size:81 final size:81
Alignment explanation
Indices: 680396--680751 Score: 550
Period size: 81 Copynumber: 4.4 Consensus size: 81
680386 ATTACCAAAA
* * *
680396 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* *
680461 TATAGAATTATTGTTT
66 TATAAAATTACTGTTT
* * *
680477 TACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTACTATTTTACCCTAGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
680542 TATAAAATTATTGTTT
66 TATAAAATTACTGTTT
* *
680558 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
680623 TATAAAATTACTATTT
66 TATAAAATTACTGTTT
*
680639 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* * *
680704 TGTAGAATTACCGTTT
66 TATAAAATTACTGTTT
* *
680720 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAGAATTACCGTTTTACCC
680752 CTAGGGTGTT
Statistics
Matches: 253, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 253 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TATAAAATTACTGTTT
Found at i:689037 original size:41 final size:43
Alignment explanation
Indices: 688991--689094 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 43
688981 TCGATACCTC
* * * *
688991 TGTCCCTGACAGGGTCTTA-ATG-AAA-TCAAATACGATGCCGA
1 TGTCCCAGACACGGTCTTAGACGTAAACTCAAAT-CGAGGCCGA
* *
689032 TGTCCCAGACATGGTCTTAGACGTAAATCTCAAATCGAGGCCTA
1 TGTCCCAGACACGGTCTTAGACGTAAA-CTCAAATCGAGGCCGA
689076 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
689095 CACGATATCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 17 0.32
42 2 0.04
43 3 0.06
44 25 0.47
45 6 0.11
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACACGGTCTTAGACGTAAACTCAAATCGAGGCCGA
Found at i:689938 original size:5 final size:5
Alignment explanation
Indices: 689920--689953 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
689910 ATGCATGGGC
689920 ATTTT ATGTTT ATTTT ATTTT ATTTT ATTTT ATT
1 ATTTT AT-TTT ATTTT ATTTT ATTTT ATTTT ATT
689954 ACACATTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:691919 original size:27 final size:27
Alignment explanation
Indices: 691881--692053 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
691871 CATACTTGAA
691881 CCCTCATGTGATAAAATGATGATTTTG
1 CCCTCATGTGATAAAATGATGATTTTG
**
691908 CCCTCATGTGATAAAATGACAATTTTG
1 CCCTCATGTGATAAAATGATGATTTTG
* *
691935 CCCTCACGTGAT---A-CA--ATTTTG
1 CCCTCATGTGATAAAATGATGATTTTG
* * *
691956 CCCTAACGTGATAAAATGATGATTTTT
1 CCCTCATGTGATAAAATGATGATTTTG
* * *
691983 CCCTTATATGATAAAATGATGATTTTT
1 CCCTCATGTGATAAAATGATGATTTTG
* **
692010 CCCTAATGTGATAAAATGACAATTTTG
1 CCCTCATGTGATAAAATGATGATTTTG
* *
692037 CCTTTATGTGATAAAAT
1 CCCTCATGTGATAAAAT
692054 AACCGAAATA
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
21 17 0.14
23 1 0.01
24 2 0.02
25 1 0.01
27 102 0.83
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.37
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGATGATTTTG
Found at i:691952 original size:21 final size:21
Alignment explanation
Indices: 691926--691968 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
691916 TGATAAAATG
*
691926 ACAATTTTGCCCTCACGTGAT
1 ACAATTTTGCCCTAACGTGAT
691947 ACAATTTTGCCCTAACGTGAT
1 ACAATTTTGCCCTAACGTGAT
691968 A
1 A
691969 AAATGATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (21 bp):
ACAATTTTGCCCTAACGTGAT
Found at i:691995 original size:48 final size:48
Alignment explanation
Indices: 691902--692038 Score: 121
Period size: 48 Copynumber: 2.7 Consensus size: 48
691892 TAAAATGATG
* * *
691902 ATTTTGCCCTCATGTGATAAAATGACAATTTTGCCCTCACGTGATACA
1 ATTTTGCCCTAACGTGATAAAATGACAATTTTGCCCTCACATGATACA
** * * * *
691950 ATTTTGCCCTAACGTGATAAAATGATGATTTTTCCCTTATATGATAAAATGA
1 ATTTTGCCCTAACGTGATAAAATGACAATTTTGCCCTCACATGAT---A-CA
* *
692002 TGATTTTTCCCTAATGTGATAAAATGACAATTTTGCC
1 --ATTTTGCCCTAACGTGATAAAATGACAATTTTGCC
692039 TTTATGTGAT
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
48 37 0.54
51 1 0.01
52 1 0.01
54 30 0.43
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (48 bp):
ATTTTGCCCTAACGTGATAAAATGACAATTTTGCCCTCACATGATACA
Found at i:692475 original size:18 final size:19
Alignment explanation
Indices: 692448--692497 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
692438 TATTTGCATT
*
692448 CTGCACTGATTACT-GCTA
1 CTGCATTGATTACTGGCTA
* *
692466 CTGCATTGATCA-TGGTTA
1 CTGCATTGATTACTGGCTA
*
692484 CTGCATTGACTACT
1 CTGCATTGATTACT
692498 ACCACTGCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (19 bp):
CTGCATTGATTACTGGCTA
Found at i:704413 original size:131 final size:131
Alignment explanation
Indices: 704254--704511 Score: 498
Period size: 131 Copynumber: 2.0 Consensus size: 131
704244 GTATGATGTA
704254 TTAATTTTGTCATTTGGATGTGAAATTATTAAAAAGGACTTATGTGTGAAACTTTGAAAATGTGA
1 TTAATTTTGTCATTTGGATGTGAAATTATTAAAAAGGACTTATGTGTGAAACTTTGAAAATGTGA
704319 TAGGTTAAATTATAGTGGTCAAATAATGCATGGTTTAAAAAAAATGTGCACTTGCATGTCAATTT
66 TAGGTTAAATTATAGTGGTCAAATAATGCATGGTTTAAAAAAAATGTGCACTTGCATGTCAATTT
704384 C
131 C
704385 TTAATTTTGTCATTTGGATGTGAAATTATTAAAAAGGACTTATGTGTGAAACTTTGAAAATGTGA
1 TTAATTTTGTCATTTGGATGTGAAATTATTAAAAAGGACTTATGTGTGAAACTTTGAAAATGTGA
* *
704450 TAGGTTAAATTATAGTGGTCAAATAATGCATGGTTTAAAAAAAATGTGGACTTGTATGTCAA
66 TAGGTTAAATTATAGTGGTCAAATAATGCATGGTTTAAAAAAAATGTGCACTTGCATGTCAA
704512 ATTCCGCACT
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 125 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (131 bp):
TTAATTTTGTCATTTGGATGTGAAATTATTAAAAAGGACTTATGTGTGAAACTTTGAAAATGTGA
TAGGTTAAATTATAGTGGTCAAATAATGCATGGTTTAAAAAAAATGTGCACTTGCATGTCAATTT
C
Found at i:710469 original size:43 final size:43
Alignment explanation
Indices: 710422--710554 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 43
710412 GCGTAATGCC
710422 GGTGAAATGATATCGGAGTTAAAGGTCTAGCAAGCTTTAAGCT
1 GGTGAAATGATATCGGAGTTAAAGGTCTAGCAAGCTTTAAGCT
** * * * *
710465 GGTG-AAT-ATTATCGG-GTT-CCGAGCCTAGCAGGC-ATAATGCC
1 GGTGAAATGA-TATCGGAGTTAAAG-GTCTAGCAAGCTTTAA-GCT
* *
710506 GGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGCT
1 GGTGAAATGATATCGGAGTTAAAGGTCTAGCAAGCTTTAAGCT
710549 GGTGAA
1 GGTGAA
710555 TATTATCGGG
Statistics
Matches: 68, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
40 4 0.06
41 19 0.28
42 17 0.25
43 24 0.35
44 4 0.06
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (43 bp):
GGTGAAATGATATCGGAGTTAAAGGTCTAGCAAGCTTTAAGCT
Found at i:710505 original size:84 final size:84
Alignment explanation
Indices: 710392--710594 Score: 352
Period size: 84 Copynumber: 2.4 Consensus size: 84
710382 GTTATGAATT
** * *
710392 TCGGGCTTTGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGAGTTAAAGGTCTAGCAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
710457 TTTAAGCTGGTGAATATTA
66 TTTAAGCTGGTGAATATTA
* *
710476 TCGGGTTCCGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
710541 TTTAAGCTGGTGAATATTA
66 TTTAAGCTGGTGAATATTA
710560 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGA
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGA
710595 TGAAATCAGG
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 111 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (84 bp):
TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
TTTAAGCTGGTGAATATTA
Found at i:710510 original size:41 final size:41
Alignment explanation
Indices: 710465--710594 Score: 104
Period size: 41 Copynumber: 3.1 Consensus size: 41
710455 GCTTTAAGCT
710465 GGTGAATATTATCGGGTTCCGAGCCTAGCAGGCATAATGCC
1 GGTGAATATTATCGGGTTCCGAGCCTAGCAGGCATAATGCC
** ** * * * *
710506 GGTGAA-ATGATATCAGACTT-AAAGGTCTAGCAAGCTTTAA-GCT
1 GGTGAATAT--TATC-GGGTTCCGA-GCCTAGCAGGC-ATAATGCC
* *
710549 GGTGAATATTATCGGGCTCCGAGCCTAGCAGGCGTAATGCC
1 GGTGAATATTATCGGGTTCCGAGCCTAGCAGGCATAATGCC
710590 GGTGA
1 GGTGA
710595 TGAAATCAGG
Statistics
Matches: 64, Mismatches: 17, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
40 5 0.08
41 24 0.38
42 10 0.16
43 20 0.31
44 5 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (41 bp):
GGTGAATATTATCGGGTTCCGAGCCTAGCAGGCATAATGCC
Found at i:715456 original size:40 final size:40
Alignment explanation
Indices: 715412--715599 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
715402 GCTACTAGCT
715412 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
715452 CAAATGCCTTCAGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** **
715492 CAAATGCCTTCGAAACTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
715532 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
715571 CAAATACCTTCGGGACTTAGCGCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
715600 CAATCCGAAT
Statistics
Matches: 128, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.25
40 94 0.73
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:718080 original size:353 final size:353
Alignment explanation
Indices: 717434--718134 Score: 1393
Period size: 353 Copynumber: 2.0 Consensus size: 353
717424 GAATCTTTTC
717434 AAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAACTCGTTCGGAGATTTCGTACGGCC
1 AAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAACTCGTTCGGAGATTTCGTACGGCC
717499 CAATGAATCTCGGACTCAACTTGCCCCTACGGCCAAATCTGAGTATCTTTTTCCAAGGTGAAACT
66 CAATGAATCTCGGACTCAACTTGCCCCTACGGCCAAATCTGAGTATCTTTTTCCAAGGTGAAACT
*
717564 TTAAGAAACACTTTATCTCCCACCTGATATTCAATGTCTTTTCGTTTCAAATCCACATACGATTT
131 TTAAGAAACACTTTATCTCCCACCTGATATTCAATGCCTTTTCGTTTCAAATCCACATACGATTT
717629 CTGATGATCTGTGGCTGCCTTCAGACTTTCACGGATTACTTTTACTTTCTGTTCAGCATCTTTAA
196 CTGATGATCTGTGGCTGCCTTCAGACTTTCACGGATTACTTTTACTTTCTGTTCAGCATCTTTAA
717694 TCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTATGGCATTTT
261 TCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTATGGCATTTT
717759 CGACCGTACAAAGCCTCGTAAGGGGGCA
326 CGACCGTACAAAGCCTCGTAAGGGGGCA
717787 AAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAACTCGTTCGGAGATTTCGTACGGCC
1 AAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAACTCGTTCGGAGATTTCGTACGGCC
717852 CAATGAATCTCGGACTCAACTTGCCCCTACGGCCAAATCTGAGTATCTTTTTCCAAGGTGAAACT
66 CAATGAATCTCGGACTCAACTTGCCCCTACGGCCAAATCTGAGTATCTTTTTCCAAGGTGAAACT
717917 TTAAGAAACACTTTATCTCCCACCTGATATTCAATGCCTTTTCGTTTCAAATCCACATACGATTT
131 TTAAGAAACACTTTATCTCCCACCTGATATTCAATGCCTTTTCGTTTCAAATCCACATACGATTT
717982 CTGATGATCTGTGGCTGCCTTCAGACTTTCACGGATTACTTTTACTTTCTGTTCAGCATCTTTAA
196 CTGATGATCTGTGGCTGCCTTCAGACTTTCACGGATTACTTTTACTTTCTGTTCAGCATCTTTAA
718047 TCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTATGGCATTTT
261 TCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTATGGCATTTT
718112 CGACCGTACAAAGCCTCGTAAGG
326 CGACCGTACAAAGCCTCGTAAGG
718135 CGCCATCTTA
Statistics
Matches: 347, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
353 347 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (353 bp):
AAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAACTCGTTCGGAGATTTCGTACGGCC
CAATGAATCTCGGACTCAACTTGCCCCTACGGCCAAATCTGAGTATCTTTTTCCAAGGTGAAACT
TTAAGAAACACTTTATCTCCCACCTGATATTCAATGCCTTTTCGTTTCAAATCCACATACGATTT
CTGATGATCTGTGGCTGCCTTCAGACTTTCACGGATTACTTTTACTTTCTGTTCAGCATCTTTAA
TCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTGTATGGCATTTT
CGACCGTACAAAGCCTCGTAAGGGGGCA
Found at i:723716 original size:40 final size:40
Alignment explanation
Indices: 723672--724539 Score: 1659
Period size: 40 Copynumber: 21.7 Consensus size: 40
723662 GCTACTAGCT
723672 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723712 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723752 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723792 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723832 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723872 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723912 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723952 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
723992 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724032 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724072 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724112 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724152 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724192 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724232 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724272 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724312 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724352 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
724392 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
724432 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
724472 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
724511 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
724540 CAATCCGAAT
Statistics
Matches: 819, Mismatches: 6, Indels: 6
0.99 0.01 0.01
Matches are distributed among these distances:
38 1 0.00
39 34 0.04
40 783 0.96
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:736776 original size:43 final size:42
Alignment explanation
Indices: 736729--736957 Score: 137
Period size: 42 Copynumber: 5.4 Consensus size: 42
736719 GGCTTTGAGC
*
736729 CTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGT
1 CTAGCAGGCTTAATGCCGGTGAAAT-ATATCAGACTTAAAGGT
* ** * *** *
736772 CTAGCAAGCTTTAA-GTTGGTG-AATATTATCAGGCTCCGA-GC
1 CTAGCAGGC-TTAATGCCGGTGAAATA-TATCAGACTTAAAGGT
*
736813 CTAGCAGGCATAATGCCGGTGAAATGATATCAGACTTAAAGGT
1 CTAGCAGGCTTAATGCCGGTGAAAT-ATATCAGACTTAAAGGT
* ** * * **** *
736856 CTAGCAAGCTTTAA-GTTGGTG-AATATTATCGGGCCCCGA-GC
1 CTAGCAGGC-TTAATGCCGGTGAAATA-TATCAGACTTAAAGGT
* * *
736897 CTAGCAGACGTAATGCCGGTGAAATAATATCGGACTTAAAGGT
1 CTAGCAGGCTTAATGCCGGTGAAAT-ATATCAGACTTAAAGGT
*
736940 CTAGCAGGCTTATTGCCG
1 CTAGCAGGCTTAATGCCG
736958 ATGATGAAAT
Statistics
Matches: 131, Mismatches: 43, Indels: 24
0.66 0.22 0.12
Matches are distributed among these distances:
40 6 0.05
41 29 0.22
42 45 0.34
43 45 0.34
44 6 0.05
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (42 bp):
CTAGCAGGCTTAATGCCGGTGAAATATATCAGACTTAAAGGT
Found at i:736834 original size:41 final size:41
Alignment explanation
Indices: 736789--736919 Score: 95
Period size: 41 Copynumber: 3.1 Consensus size: 41
736779 GCTTTAAGTT
736789 GGTGAATATTATCAGGCTCCGAGCCTAGCAGGCATAATGCC
1 GGTGAATATTATCAGGCTCCGAGCCTAGCAGGCATAATGCC
* *** * * * **
736830 GGTGAA-ATGATATCAGACTTAAAGGTCTAGCAAGCTTTAA-GTT
1 GGTGAATAT--TATCAGGCTCCGA-GCCTAGCAGGC-ATAATGCC
* * * *
736873 GGTGAATATTATCGGGCCCCGAGCCTAGCAGACGTAATGCC
1 GGTGAATATTATCAGGCTCCGAGCCTAGCAGGCATAATGCC
736914 GGTGAA
1 GGTGAA
736920 ATAATATCGG
Statistics
Matches: 63, Mismatches: 21, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
40 5 0.08
41 21 0.33
42 16 0.25
43 16 0.25
44 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (41 bp):
GGTGAATATTATCAGGCTCCGAGCCTAGCAGGCATAATGCC
Found at i:736834 original size:84 final size:84
Alignment explanation
Indices: 736725--736950 Score: 389
Period size: 84 Copynumber: 2.7 Consensus size: 84
736715 TTCGGGCTTT
736725 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGTTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGTTG
*
736790 GTGAATATTATCAGGCTCC
66 GTGAATATTATCAGGCCCC
*
736809 GAGCCTAGCAGGCATAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGTTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGTTG
*
736874 GTGAATATTATCGGGCCCC
66 GTGAATATTATCAGGCCCC
* * * *
736893 GAGCCTAGCAGACGTAATGCCGGTGAAATAATATCGGACTTAAAGGTCTAGCAGGCTT
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTT
736951 ATTGCCGATG
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 134 1.00
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (84 bp):
GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGTTG
GTGAATATTATCAGGCCCC
Found at i:741765 original size:42 final size:42
Alignment explanation
Indices: 741718--741799 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
741708 TTTGATTATA
* * *
741718 AGCTTAGATATGTTTAAATATTAATTTTTTAAGTAATTTTGT
1 AGCTTAGATATGTTAAAAAATTAATTTGTTAAGTAATTTTGT
* *
741760 AGCTTAGGTATGTTAAAAAATTAATTTGTTAAGTATTTTT
1 AGCTTAGATATGTTAAAAAATTAATTTGTTAAGTAATTTT
741800 TTTAGTTTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.50
Consensus pattern (42 bp):
AGCTTAGATATGTTAAAAAATTAATTTGTTAAGTAATTTTGT
Found at i:755378 original size:46 final size:46
Alignment explanation
Indices: 755311--755528 Score: 237
Period size: 46 Copynumber: 4.7 Consensus size: 46
755301 AACCTGCCCC
* *
755311 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCA
*
755357 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCA
* *
755403 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GGC-A-TTCACATCCA
* * * * * * *
755451 TCA-CGAACTCGGACTCAACTCAATGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCA
* *
755496 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
755529 ATGCTCAACC
Statistics
Matches: 146, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 3 0.02
45 1 0.01
46 98 0.67
47 26 0.18
48 2 0.01
49 3 0.02
50 5 0.03
51 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCA
Found at i:755494 original size:93 final size:93
Alignment explanation
Indices: 755362--755532 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
755352 ATCCATAAGT
* *
755362 GAACTCAGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
755427 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * * *
755455 GAACTCGGACTCAACTCAATGAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
755520 CGAGTTCGGATGC
66 CGAGTTCAGATGC
755533 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:755987 original size:31 final size:30
Alignment explanation
Indices: 755952--756012 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
755942 ATTTAATAGG
755952 AACTTTAAAAAAAATTACACTTTTGCCCCTA
1 AACTTT-AAAAAAATTACACTTTTGCCCCTA
*** *
755983 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
756013 GGCTCGGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:759048 original size:37 final size:37
Alignment explanation
Indices: 758995--759095 Score: 175
Period size: 37 Copynumber: 2.7 Consensus size: 37
758985 CGAATAGTCC
*
758995 CCACACGTAGTTATCGGGTCTTACCCGAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGAACAAAATCT
* *
759032 CCACACGTAGTCATCGGGTCTTACTCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGAACAAAATCT
759069 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
759096 GAATATATTT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGAACAAAATCT
Found at i:759298 original size:48 final size:48
Alignment explanation
Indices: 759238--760701 Score: 2289
Period size: 48 Copynumber: 30.4 Consensus size: 48
759228 ATATACACAC
* * *
759238 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
759286 ATCTCATGCATATTTCACATTAGCCATTCGGATTTACCACATTTATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA--TATACAT
* *
759336 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759384 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
759432 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*** * *
759480 ATCTCATACATATTTCATGTTAGCCATACGGATTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
759528 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
759576 ATCTCATACATATTTCATATTAGCCATTCGGCTTGACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
759624 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759672 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759720 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759768 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759816 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759864 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759912 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
759960 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
760008 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
760056 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
760104 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
760152 ATCACATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
760200 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
760248 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACAACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*** * *
760296 ATCTCATACATATTTCATGTTAGCCATTCAGCTTTACCACATCTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
760344 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
760392 ATCTCAAACATATTTCATATTAGCCATTCGGCTTTACCACATACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
760440 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACAACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*** * *
760488 ATCTCATACATATTTCATGTTAGCCATTCAGCTTTACCACATCTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
760536 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
760584 ATCTCATGCATATTTCACATTAGCCATTCGGATTTACCACATTTATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA--TATACAT
* *
760634 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
760682 ATCTCATACATATTTCACAC
1 ATCTCATACATATTTCACAC
760702 GTTAATTTTT
Statistics
Matches: 1319, Mismatches: 93, Indels: 8
0.93 0.07 0.01
Matches are distributed among these distances:
48 1231 0.93
50 88 0.07
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:763255 original size:40 final size:40
Alignment explanation
Indices: 763223--763454 Score: 338
Period size: 40 Copynumber: 5.8 Consensus size: 40
763213 CCAGCATGAT
* *
763223 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * *
763263 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * **
763303 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGTGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * *
763343 TGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
*
763383 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
*
763423 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATAACACT
763455 CTCAATTCTC
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
Found at i:763557 original size:40 final size:40
Alignment explanation
Indices: 763502--763663 Score: 288
Period size: 40 Copynumber: 4.0 Consensus size: 40
763492 CCTTAGTACT
* * *
763502 CTAGCGCGAATGCTCTTCGAGACTTAGCCCGGGTATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
763542 CTAGCACGAATGCTCTTTGGGACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
763582 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
763622 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
763662 CT
1 CT
763664 CTCAATTCTC
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 117 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:763581 original size:209 final size:209
Alignment explanation
Indices: 763290--763708 Score: 757
Period size: 209 Copynumber: 2.0 Consensus size: 209
763280 CCCTGATATA
* **
763290 ACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGTGAATGCTCTTCGAGA
1 ACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACTAGCACGAATGCTCTTCGAGA
*
763355 CTTAGCCCGGGTATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC
66 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC
763420 GAATGCTCTTCGGGACTTAGCCCGGATATATCACTCTCAATTCTCATGTACATATACACATATAG
131 GAATGCTCTTCGGGACTTAGCCCGGATATATCACTCTCAATTCTCATGTACATATACACATATAG
763485 AAATACACCTTAGT
196 AAATACACCTTAGT
* * * * *
763499 ACTCTAGCGCGAATGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAATGCTCTTTGGGA
1 ACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACTAGCACGAATGCTCTTCGAGA
763564 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC
66 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC
763629 GAATGCTCTTCGGGACTTAGCCCGGATATATCACTCTCAATTCTCATGTACATATACACATATAG
131 GAATGCTCTTCGGGACTTAGCCCGGATATATCACTCTCAATTCTCATGTACATATACACATATAG
763694 AAATACACCTTAGT
196 AAATACACCTTAGT
763708 A
1 A
763709 TATCATTTAC
Statistics
Matches: 201, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 201 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (209 bp):
ACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACTAGCACGAATGCTCTTCGAGA
CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC
GAATGCTCTTCGGGACTTAGCCCGGATATATCACTCTCAATTCTCATGTACATATACACATATAG
AAATACACCTTAGT
Found at i:763845 original size:62 final size:62
Alignment explanation
Indices: 763748--763871 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
763738 AACATGCTTA
*
763748 TCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCAGATTTATAGTCATAACACT
1 TCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACT
*
763810 TCGACCATTCAACTTCCAGTTCCATAGCCACATACAAGAATCACATTTATAGTCATAACACT
1 TCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACT
763872 CTTTCAAAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.27
Consensus pattern (62 bp):
TCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACT
Found at i:765031 original size:37 final size:38
Alignment explanation
Indices: 764930--765032 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 38
764920 CGAATAGTCC
* *
764930 CCACACGTAGTTATCGGTTCTTACCC-GATCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGATCAAAATCT
764967 CCACACGTAGTCATCGGGTCTTACCCGGA-CAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGATCAAAATCT
765004 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
765033 ATATATTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 61 0.97
38 2 0.03
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (38 bp):
CCACACGTAGTCATCGGGTCTTACCCGGATCAAAATCT
Found at i:765233 original size:48 final size:48
Alignment explanation
Indices: 765173--766175 Score: 1301
Period size: 48 Copynumber: 21.0 Consensus size: 48
765163 ATATAAACAC
* * *
765173 ATCTCCTACATATTTCACATTAGTCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
765221 ATCTCATGCATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
765269 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
765317 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
** * *
765367 ATCTCATACATATTTCATGTTAGCCATTCGGATTTACCACATAAACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
765415 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
765463 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** * *
765511 ATCTCATACATATTTCATGTTAGCCATTCGGATTTACCACATAAACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
765559 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
765607 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** * *
765655 ATCTCATACATATTTCATGTTAGCCATTCGGATTTACCACATAAACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
765703 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
765751 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
765799 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
765847 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** * *
765895 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTATCTCATAT--AT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* ** * * * * *
765941 ATTTC--ACAT-TAGC-CATTCGGCTTTAC--C---A-CATATATATAT
1 ATCTCATACATATTTCACATTAGCCATT-CGGCTTTACCACATATACAT
* ** * *
765980 CTCTCATACATATTTCATGTTAGCCATACGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
766028 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
** * *
766078 ATCTCATACATATTTCATGTTAGCCATACGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
766126 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
766174 AT
1 AT
766176 ATAGTTTCAT
Statistics
Matches: 830, Mismatches: 108, Indels: 34
0.85 0.11 0.03
Matches are distributed among these distances:
37 5 0.01
38 1 0.00
39 5 0.01
41 5 0.01
42 9 0.01
43 8 0.01
44 4 0.00
46 6 0.01
47 1 0.00
48 701 0.84
50 85 0.10
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:765361 original size:144 final size:144
Alignment explanation
Indices: 765173--766175 Score: 1456
Period size: 144 Copynumber: 7.0 Consensus size: 144
765163 ATATAAACAC
* * * * * *
765173 ATCTCCTACATATTTCACATTAGTCATTCGGCTTTACCAAATATACATATCTCATGCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
** * * *
765238 CATTAGCCATTCGGATTTACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
66 TGTTAGCCATTCGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
765303 TACCACATATACAT
131 TACCACATATACAT
765317 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATATATATCTCATACATATTT
*
765382 CATGTTAGCCATTCGGATTTACCACATAAACATATCTCATATATATTTCACATTAGCCATTCGGC
64 CATGTTAGCCATTCGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
*
765447 TTTACCACATATATAT
129 TTTACCACATATACAT
*
765463 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
*
765528 TGTTAGCCATTCGGATTTACCACATAAACATATCTCATATATATTTCACATTAGCCATTCGGCTT
66 TGTTAGCCATTCGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
765593 TACCACATATACAT
131 TACCACATATACAT
*
765607 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
*
765672 TGTTAGCCATTCGGATTTACCACATAAACATATCTCATATATATTTCACATTAGCCATTCGGCTT
66 TGTTAGCCATTCGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
765737 TACCACATATACAT
131 TACCACATATACAT
* *
765751 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
*** ** * * *
765816 CACTAGCCATTCGGCCTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCCT
66 TGTTAGCCATTCGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
* *
765881 TACCACACATATAT
131 TACCACATATACAT
*** * *
765895 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTATCTC--ATATATAT-T--T-C--A---CA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* * * ** * *
765949 --TTAGCCATTCGGCTTTACCACATATATATATCTCTCATACATATTTCATGTTAGCCATACGGA
66 TGTTAGCCATTCGGATTTACCACATATACATA--TCTCATATATATTTCACATTAGCCATTCGGC
766012 TTTACCACATATACAT
129 TTTACCACATATACAT
* *
766028 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATATATATCTCATACATATTT
*
766093 CATGTTAGCCATACGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
64 CATGTTAGCCATTCGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGC
*
766158 TTTACCACATATATAT
129 TTTACCACATATACAT
766174 AT
1 AT
766176 ATAGTTTCAT
Statistics
Matches: 779, Mismatches: 61, Indels: 36
0.89 0.07 0.04
Matches are distributed among these distances:
131 27 0.03
133 76 0.10
136 1 0.00
137 8 0.01
138 2 0.00
139 1 0.00
140 1 0.00
141 2 0.00
142 7 0.01
143 1 0.00
144 446 0.57
146 180 0.23
148 27 0.03
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
TGTTAGCCATTCGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:765943 original size:35 final size:35
Alignment explanation
Indices: 765894--765977 Score: 123
Period size: 35 Copynumber: 2.4 Consensus size: 35
765884 CACACATATA
* **
765894 TATCTCATACATATTTCATGTTAGCCATTCGGCTT
1 TATCTCATATATATTTCACATTAGCCATTCGGCTT
765929 TATCTCATATATATTTCACATTAGCCATTCGGCTT
1 TATCTCATATATATTTCACATTAGCCATTCGGCTT
* *
765964 TACCACATATATAT
1 TATCTCATATATAT
765978 ATCTCTCATA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (35 bp):
TATCTCATATATATTTCACATTAGCCATTCGGCTT
Found at i:765948 original size:83 final size:84
Alignment explanation
Indices: 765846--766024 Score: 270
Period size: 83 Copynumber: 2.1 Consensus size: 84
765836 CACATATACA
*
765846 TATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACACATATATA-TCTCATACATATTT
1 TATCTCATATATATTTCACACTAGCCATTCGGCCTTACCACACATATATACTCTCATACATATTT
* *
765910 CATGTTAGCCATTCGGCTT
66 CATGTTAGCCATACGGATT
* * *
765929 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCTCATACATATT
1 TATCTCATATATATTTCACACTAGCCATTCGGCCTTACCACACATATATA-CTCTCATACATATT
765994 TCATGTTAGCCATACGGATT
65 TCATGTTAGCCATACGGATT
* *
766014 TACCACATATA
1 TATCTCATATA
766025 CATATCTCAT
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
83 46 0.53
85 40 0.47
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (84 bp):
TATCTCATATATATTTCACACTAGCCATTCGGCCTTACCACACATATATACTCTCATACATATTT
CATGTTAGCCATACGGATT
Found at i:766051 original size:133 final size:131
Alignment explanation
Indices: 765798--766075 Score: 385
Period size: 133 Copynumber: 2.1 Consensus size: 131
765788 CACATATACA
*
765798 TATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCATACATATTTC
1 TATCTCATATATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCATACATATTTC
* * * **
765863 ACACTAGCCATTCGGCCTTACCACACATATATATCTCATACATATTTCATGTTAGCCATTCGGCT
66 ACACTAGCCATACGGACTTACCACACATACATATCTCATACATATTTCACATTAGCCATTCGGCT
765928 T
131 T
* * *
765929 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCTCATACATATT
1 TATCTCATATATATTTCACACTAGCCATTCGGCCTTACCACATATACATA--TCTCATACATATT
*** * * *
765994 TCATGTTAGCCATACGGATTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGG
64 TCACACTAGCCATACGGACTTACCACACATACATATCTCATACATATTTCACATTAGCCATTCGG
766059 CTT
129 CTT
* *
766062 TACCACATATATAT
1 TATCTCATATATAT
766076 ATATCTCATA
Statistics
Matches: 128, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
131 46 0.36
133 82 0.64
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (131 bp):
TATCTCATATATATTTCACACTAGCCATTCGGCCTTACCACATATACATATCTCATACATATTTC
ACACTAGCCATACGGACTTACCACACATACATATCTCATACATATTTCACATTAGCCATTCGGCT
T
Found at i:766169 original size:98 final size:98
Alignment explanation
Indices: 765929--766177 Score: 489
Period size: 98 Copynumber: 2.5 Consensus size: 98
765919 CATTCGGCTT
*
765929 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCTCATACATATT
1 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATT
765994 TCATGTTAGCCATACGGATTTACCACATATACA
66 TCATGTTAGCCATACGGATTTACCACATATACA
766027 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATT
1 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATT
766092 TCATGTTAGCCATACGGATTTACCACATATACA
66 TCATGTTAGCCATACGGATTTACCACATATACA
766125 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATAT
1 TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATAT
766178 AGTTTCATCA
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 150 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (98 bp):
TATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATATCTCATACATATT
TCATGTTAGCCATACGGATTTACCACATATACA
Found at i:769922 original size:6 final size:6
Alignment explanation
Indices: 769904--769964 Score: 54
Period size: 6 Copynumber: 10.5 Consensus size: 6
769894 TCCTCCTATT
* * * *
769904 TTTTTA TTCTTA TTTTTA -TTTTA -TTTTA TTTTGA TTTTTC TTTTGA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
769950 TTTTAA TTTTCA TTT
1 TTTTTA TTTTTA TTT
769965 CAATTTTATT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 10 0.22
6 35 0.78
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:769927 original size:5 final size:5
Alignment explanation
Indices: 769905--769984 Score: 56
Period size: 5 Copynumber: 14.8 Consensus size: 5
769895 CCTCCTATTT
*
769905 TTTTA TTCTTA TTTTTA TTTTA TTTTA TTTTGA TTTTTC TTTTGA TTTTAA
1 TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTT-A TTTT-A
*
769956 TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
769985 GAAAGACATA
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
3 3 0.05
5 28 0.46
6 24 0.39
7 6 0.10
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:769947 original size:12 final size:12
Alignment explanation
Indices: 769904--769986 Score: 66
Period size: 12 Copynumber: 7.0 Consensus size: 12
769894 TCCTCCTATT
769904 TTTTTATTCTT-A
1 TTTTTATT-TTGA
769916 TTTTTATTTT-A
1 TTTTTATTTTGA
769927 -TTTTATTTTGA
1 TTTTTATTTTGA
*
769938 TTTTTCTTTTGA
1 TTTTTATTTTGA
* *
769950 TTTTAATTTTCA
1 TTTTTATTTTGA
**
769962 TTTCAATTTT-A
1 TTTTTATTTTGA
769973 TTATTTTATTTTGA
1 -T-TTTTATTTTGA
769987 AAGACATATC
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
10 9 0.15
11 5 0.08
12 37 0.63
13 7 0.12
14 1 0.02
ACGTcount: A:0.19, C:0.05, G:0.04, T:0.72
Consensus pattern (12 bp):
TTTTTATTTTGA
Found at i:773526 original size:79 final size:81
Alignment explanation
Indices: 773415--773599 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
773405 GCTACTCGTT
* * *
773415 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTC-GGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
773478 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
773495 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
773559 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
773575 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
773600 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 31 0.34
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:773599 original size:40 final size:40
Alignment explanation
Indices: 773396--773599 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
773386 CGGAATTTAA
** * *
773396 CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
773436 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
773476 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
773515 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
773555 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
773595 CCGGA
1 CCGGA
773600 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:774797 original size:56 final size:56
Alignment explanation
Indices: 774730--774849 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
774720 TATTAGTTTA
774730 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
774786 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
774842 TTGCCCAT
1 TTGCCCAT
774850 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:776000 original size:13 final size:13
Alignment explanation
Indices: 775984--776016 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
775974 TTTAATTAAA
*
775984 TTAGTTAATTAGT
1 TTAGATAATTAGT
775997 TTAGATAATTAGT
1 TTAGATAATTAGT
776010 TTA-ATAA
1 TTAGATAA
776017 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:777761 original size:40 final size:40
Alignment explanation
Indices: 777706--777786 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
777696 AATGCTTAGT
* *
777706 AAGTTTTGAGCCATGAAATTAGACACAACTAAAGTGTAGC
1 AAGTTTTGAGCCATGAAATTAGACACAACGAAAGTATAGC
777746 AAGTTTTGAGCCATGAAATTAGACACAACGAAAGTATAGC
1 AAGTTTTGAGCCATGAAATTAGACACAACGAAAGTATAGC
777786 A
1 A
777787 TTCATATGGC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (40 bp):
AAGTTTTGAGCCATGAAATTAGACACAACGAAAGTATAGC
Found at i:796000 original size:40 final size:40
Alignment explanation
Indices: 795945--796036 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
795935 GGGATTTAAT
*
795945 CGGATATAGCT-ACTCGCTCGAA-TGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCAC-AATTGCCTTCGGGACATAGCC
*
795985 CGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAATTGCCTTCGGGACATAGCC
*
796025 CAGATATAGTAA
1 CGGATATAGTAA
796037 NNNNNNNNNN
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.06
40 44 0.94
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAATTGCCTTCGGGACATAGCC
Found at i:799374 original size:58 final size:55
Alignment explanation
Indices: 799255--799389 Score: 171
Period size: 58 Copynumber: 2.4 Consensus size: 55
799245 TTAATTCATA
* *
799255 TAATAATAATTATATTAAGAATATTATTAAATTATATTTTTTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATATGATTAAATTATATTTTTTCATTAAATTATATT
* * * *
799311 TAATAATAATTATGTTAAAATATGGTTAAACTATTTATTATTTTCATTAAATTATTTT
1 TAATAATAATTATATTAAAATATGATTAAA-T-TATATT-TTTTCATTAAATTATATT
*
799369 TAATAATAATTTTATTAAAAT
1 TAATAATAATTATATTAAAAT
799390 TTAATAACAA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
55 10 0.15
56 18 0.26
57 5 0.07
58 35 0.51
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (55 bp):
TAATAATAATTATATTAAAATATGATTAAATTATATTTTTTCATTAAATTATATT
Found at i:799559 original size:36 final size:34
Alignment explanation
Indices: 799485--799561 Score: 93
Period size: 34 Copynumber: 2.2 Consensus size: 34
799475 ACAACATCAT
**
799485 TCTATTCAACCAAACATAAGAATATTATTACAGT
1 TCTATTCAACCAAACATAAGAATATTATTACAAC
*
799519 TCTATTCAACCAAACAGT-TGAATTACTTATTACAAC
1 TCTATTCAACCAAACA-TAAGAA-TA-TTATTACAAC
799555 TCTATTC
1 TCTATTC
799562 CATTACAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 19 0.51
35 3 0.08
36 15 0.41
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.35
Consensus pattern (34 bp):
TCTATTCAACCAAACATAAGAATATTATTACAAC
Found at i:801076 original size:19 final size:19
Alignment explanation
Indices: 801036--801076 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
801026 CGGGCTAAGG
* *
801036 TTTTCTTTTCTTTTCTTCT
1 TTTTCTTTTCTTTTCCTAT
*
801055 TTTTTTTTTCTTTTCCTAT
1 TTTTCTTTTCTTTTCCTAT
801074 TTT
1 TTT
801077 CGAATCTATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTCTTTTCTTTTCCTAT
Found at i:801145 original size:12 final size:13
Alignment explanation
Indices: 801106--801147 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
801096 ATAATATATT
*
801106 AAAT-TATATCAA
1 AAATATATATAAA
*
801118 AAATATATTTTAAA
1 AAATATA-TATAAA
801132 AAATATATATAAA
1 AAATATATATAAA
801145 AAA
1 AAA
801148 CGTACCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 4 0.16
13 10 0.40
14 11 0.44
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATATATATAAA
Found at i:801926 original size:25 final size:25
Alignment explanation
Indices: 801871--801927 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
801861 CTATCATCAT
801871 TTTATTATTATTATTTGTTGTTTAA
1 TTTATTATTATTATTTGTTGTTTAA
* * *
801896 TATATTATTATTA-TTGTATTTTTTA
1 TTTATTATTATTATTTGT-TGTTTAA
801921 TTTATTA
1 TTTATTA
801928 CCACTTCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (25 bp):
TTTATTATTATTATTTGTTGTTTAA
Found at i:802089 original size:3 final size:3
Alignment explanation
Indices: 802081--802393 Score: 90
Period size: 3 Copynumber: 105.3 Consensus size: 3
802071 ATTGTTACTG
* * * * * *
802081 TTA TTA TTA TTA TCA CTTG TTA TTA TTC TCA TCA CTA TTA TTA -TA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
802126 CT- TTA TTA TTG TTA CTTA TTA TT- TTA CTA TTA TTA TT- TAA TATA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * * * * *
802170 TCA TCA TTA TTA TTA TT- TTCA TTG TAA CTTA ATA -GA TTA GTA TTC
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA -TTA TTA TTA TTA TTA TTA
* ** *
802215 TTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCC CTA TTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * * * * *
802261 TTA CTA TTA GCA CTA TTT TTA TTA CTA TTA TT- TAA TATA TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* ** * * * * * *
802306 TTA TTA CTA TCG TTA CTA TTA TTG TTA -TA TTG TTA CTA TTA CTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
802353 -TA TTA TTA -TG TTA TTA -TA TCTT TTA CTA TTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T
802394 ATTTTCCTTT
Statistics
Matches: 214, Mismatches: 77, Indels: 38
0.65 0.23 0.12
Matches are distributed among these distances:
2 16 0.07
3 181 0.85
4 17 0.08
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:802114 original size:19 final size:19
Alignment explanation
Indices: 802079--802116 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
802069 CCATTGTTAC
*
802079 TGTTATTATTATTATCACT
1 TGTTATTATTATCATCACT
*
802098 TGTTATTATTCTCATCACT
1 TGTTATTATTATCATCACT
802117 ATTATTATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.55
Consensus pattern (19 bp):
TGTTATTATTATCATCACT
Found at i:802158 original size:14 final size:13
Alignment explanation
Indices: 802116--802163 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
802106 TTCTCATCAC
*
802116 TATTATTATACTT
1 TATTATTTTACTT
802129 TATTATTGTTAC-T
1 TATTATT-TTACTT
802142 TATTATTTTACTAT
1 TATTATTTTACT-T
802156 TATTATTT
1 TATTATTT
802164 AATATATCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 4 0.13
13 15 0.48
14 12 0.39
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (13 bp):
TATTATTTTACTT
Found at i:802342 original size:20 final size:20
Alignment explanation
Indices: 802317--802390 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 20
802307 TATTACTATC
802317 GTTACTATTATTGTTATATT
1 GTTACTATTATTGTTATATT
* * *
802337 GTTACTATTACTATCATATT
1 GTTACTATTATTGTTATATT
* * * *
802357 ATTA-TGTTATT-ATATCTT
1 GTTACTATTATTGTTATATT
802375 -TTACTATTATTGTTAT
1 GTTACTATTATTGTTAT
802391 TATATTTTCC
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
17 3 0.07
18 10 0.24
19 8 0.20
20 20 0.49
ACGTcount: A:0.27, C:0.08, G:0.07, T:0.58
Consensus pattern (20 bp):
GTTACTATTATTGTTATATT
Found at i:802409 original size:22 final size:23
Alignment explanation
Indices: 802356--802398 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
802346 ACTATCATAT
802356 TATTA-TGTTATTATATCTTTTAC
1 TATTATTGTTATTATA-CTTTTAC
802379 TATTATTGTTATTATA-TTTT
1 TATTATTGTTATTATACTTTT
802399 CCTTTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 5 0.26
24 10 0.53
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.65
Consensus pattern (23 bp):
TATTATTGTTATTATACTTTTAC
Found at i:802579 original size:3 final size:3
Alignment explanation
Indices: 802558--802777 Score: 76
Period size: 3 Copynumber: 73.0 Consensus size: 3
802548 TAAACTTTAG
* **
802558 ATT ACTT ATT ATT -TGT ATT ATT GTT ATT ATT ATT -TGT ATTT ACC ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * * *
802605 ATT ATT ACT ATT ATT -TT CACTT -TT ATT ACT ATT ACT ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT -A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
802650 ATT ATT AAT ATA AAT ATT AAT ACT CTT ATT ACT ACTT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * ** ** * * **
802695 ATT ATT AAT ATT ATT GTT -TT ACC ACC ACT ATT ATT ATT ATC AAC ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
802742 ATT ATT ATT ATT ATC GTT -TT CATT ATT ATT GTT ATT
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
802778 TTTGTGTTGT
Statistics
Matches: 159, Mismatches: 43, Indels: 30
0.69 0.19 0.13
Matches are distributed among these distances:
2 12 0.08
3 135 0.85
4 9 0.06
5 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:808239 original size:88 final size:88
Alignment explanation
Indices: 808135--808303 Score: 223
Period size: 88 Copynumber: 1.9 Consensus size: 88
808125 GTGACTTCAC
* * * * * *
808135 TCTATTCCGCTAGAACTTCAAAGAGCTACGAATTGTGGCTTCAAACCTCTCTAGTGCTATTTC-A
1 TCTACTCCGCTAGAACTTCAAAGAGATACGAATGGTGGCTTCAAACCTCTCCAGTGCCACTTCAA
808199 GGAAGAAGAAATTTGTAACTTCGA
66 GG-AGAAGAAATTTGTAACTTCGA
* ** *
808223 TCTACTCCGCTAGAACTTCAAGGAGATACGAATGGTGGCTTTGAGCCTCTCCAGTGCCACTTCAA
1 TCTACTCCGCTAGAACTTCAAAGAGATACGAATGGTGGCTTCAAACCTCTCCAGTGCCACTTCAA
*
808288 GGAGAAGAGATTTGTA
66 GGAGAAGAAATTTGTA
808304 GATTCTAGCC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
88 66 0.96
89 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (88 bp):
TCTACTCCGCTAGAACTTCAAAGAGATACGAATGGTGGCTTCAAACCTCTCCAGTGCCACTTCAA
GGAGAAGAAATTTGTAACTTCGA
Found at i:808438 original size:44 final size:44
Alignment explanation
Indices: 808384--808892 Score: 181
Period size: 44 Copynumber: 11.7 Consensus size: 44
808374 AGATCTGTAA
** *
808384 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATCGCC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * * * * **
808428 TTCAATCTGTTTCCCTACTGCATAGGGGGTTAAGATCCGT-AAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * *
808471 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCGTCACC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
** * * ** * * * **
808515 TTTGATCTGTTTCCCTACTGCTTAGGGAG-ACAAGATCTGTAATT
1 TTCAACCTGTTACCCTACTGCTTAGGG-GTTTAAGGTCCGTCACC
* * * * * **
808559 TTTAGCCTGTTACCCTATTGCTTAGGGG-TTAAGGCCCTTCGTC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * * * * * ** **
808602 TTCGATCTGTT-TCCTACTACTTAGGGGGTTAAGATTTGT-AAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * * * * * **
808644 TTCAGCCTATTATCCTACTGTTTAGGGGTTTAAGGCCCTTCGTC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * * ** * * * **
808688 TTCAATCTGCT-CCACTACTGTTTAGGGAG-ACAAGATCTGTAATT
1 TTCAACCTGTTACC-CTACTGCTTAGGG-GTTTAAGGTCCGTCACC
* * * *
808732 TTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCTTCATC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * * * * * * * * **
808775 TTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAATT
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * * **
808819 TTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCTTCGTC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
* * *
808862 TTCGATCTGTTTCCCTACTGCTTAGGAGGTT
1 TTCAACCTGTTACCCTACTGCTTAGG-GGTT
808893 AAGATCTGTA
Statistics
Matches: 323, Mismatches: 131, Indels: 21
0.68 0.28 0.04
Matches are distributed among these distances:
42 20 0.06
43 133 0.41
44 165 0.51
45 5 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (44 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCGTCACC
Found at i:808492 original size:87 final size:86
Alignment explanation
Indices: 808373--808906 Score: 662
Period size: 87 Copynumber: 6.2 Consensus size: 86
808363 ATAAGGAGAC
* * * * *
808373 AAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TCTATCGCCTTCAATCT
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCT-TCGTCTTCGATCT
*
808436 GTTTCCCTACTGCATAGGGGGTT
64 GTTTCCCTACTGCTTAGGGGGTT
* * ** *
808459 AAGATCCGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCGTCACCTTTGATCTG
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCTTCGTCTTCGATCTG
* **
808524 TTTCCCTACTGCTTAGGGAGAC
65 TTTCCCTACTGCTTAGGGGGTT
* *
808546 AAGATCTGTAATTTTTAGCCTGTTACCCTATTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTG
1 AAGATCTGTAA-ATTTAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTG
*
808611 TTT-CCTACTACTTAGGGGGTT
65 TTTCCCTACTGCTTAGGGGGTT
* * * * * *
808632 AAGATTTGTAAATTCAGCCTATTATCCTACTGTTTAGGGGTTTAAGGCCCTTCGTCTTCAATCTG
1 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCTTCGTCTTCGATCTG
* * * **
808697 -CTCCACTACTGTTTAGGGAGAC
65 TTTCC-CTACTGCTTAGGGGGTT
* * *
808719 AAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTCGATCTA
1 AAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTG
*
808784 TTTCCCTACTACTTAGGGGGTT
65 TTTCCCTACTGCTTAGGGGGTT
*
808806 AAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTG
1 AAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTG
*
808871 TTTCCCTACTGCTTAGGAGGTT
65 TTTCCCTACTGCTTAGGGGGTT
808893 AAGATCTGTAAATT
1 AAGATCTGTAAATT
808907 CACCGATCTT
Statistics
Matches: 383, Mismatches: 57, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
85 24 0.06
86 56 0.15
87 250 0.65
88 53 0.14
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (86 bp):
AAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTGT
TTCCCTACTGCTTAGGGGGTT
Found at i:808629 original size:173 final size:174
Alignment explanation
Indices: 808367--808887 Score: 748
Period size: 173 Copynumber: 3.0 Consensus size: 174
808357 TACTACATAA
* * *
808367 GGAGACAAGATCTGTAA--TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TCTATCGCCT
1 GGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCT-TCGTCT
* * * *
808429 TCAATCTGTTTCCCTACTGCATAGGGGGTTAAGATCCGTAAATTTAGCCTGTTACCCTACTGCTT
64 TCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTT
* ** *
808494 AGGGGTTTAAGGCCCGTCACCTTTGATCTGTTTCCCTACTGCTTAG
129 AGGGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
* *
808540 GGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTATTGCTTAGGGGTTAAGGCCCTTCGTCTTC
1 GGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTC
* * * * *
808605 GATCTGTTT-CCTACTACTTAGGGGGTTAAGATTTGTAAATTCAGCCTATTATCCTACTGTTTAG
66 GATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAG
* * *
808669 GGGTTTAAGGCCCTTCGTCTTCAATCTG-CTCCACTACTGTTTAG
131 GGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCC-CTACTGCTTAG
*
808713 GGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTC
1 GGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTC
* *
808778 GATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
66 GATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTA
808843 GGGG-TTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
130 GGGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
808887 G
1 G
808888 AGGTTAAGAT
Statistics
Matches: 307, Mismatches: 34, Indels: 13
0.87 0.10 0.04
Matches are distributed among these distances:
172 3 0.01
173 167 0.54
174 85 0.28
175 52 0.17
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (174 bp):
GGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTC
GATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAG
GGGTTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
Found at i:808790 original size:260 final size:261
Alignment explanation
Indices: 808373--808908 Score: 767
Period size: 260 Copynumber: 2.1 Consensus size: 261
808363 ATAAGGAGAC
* *
808373 AAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATCGCCTTCAATCTG
1 AAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCCTATCGCCTTCAATCTG
* * **
808437 TTTCCCTACTGCATAGGGGGTTAAGATCCGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTT
66 TCTCCCTACTGCATAGGGAGACAAGATCCGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTT
* * * *
808502 AAGGCCCGTCACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAATTTTTAGCCT
131 AAGGCCCGTCACCTTCGATCTATTTCCCTACTACTTAGGGAGACAAGATCTGTAATTTTCAGCCT
* *
808567 GTTACCCTATTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTGTTT-CCTACTACTTAGGGGGT
196 GTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTACTTAGGAGGT
808631 T
261 T
* * * * *
808632 AAGATTTGTAAATTCAGCCTATTATCCTACTGTTTAGGGGTTTAAGGCCCT-TCGTCTTCAATCT
1 AAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGG-CCTATCGCCTTCAATCT
** * *
808696 G-CTCCACTACTGTTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGG
65 GTCTCC-CTACTGCATAGGGAGACAAGATCCGTAAATTT-AGCCTGTTACCCTACTGCTTAGGGG
* * * **
808760 -TTAAGGCCCTTCATCTTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAATTTTCAG
128 TTTAAGGCCCGTCACCTTCGATCTATTTCCCTACTACTTAGGGAGACAAGATCTGTAATTTTCAG
*
808824 CCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGA
193 CCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTACTTAGGA
808889 GGTT
258 GGTT
808893 AAGATCTGTAAATTCA
1 AAGATCTGTAAATTCA
808909 CCGATCTTGG
Statistics
Matches: 244, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
259 11 0.05
260 175 0.72
261 58 0.24
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (261 bp):
AAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCCTATCGCCTTCAATCTG
TCTCCCTACTGCATAGGGAGACAAGATCCGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTT
AAGGCCCGTCACCTTCGATCTATTTCCCTACTACTTAGGGAGACAAGATCTGTAATTTTCAGCCT
GTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTACTTAGGAGGT
T
Found at i:816468 original size:18 final size:17
Alignment explanation
Indices: 816440--816473 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
816430 TTGCAATGCT
816440 GATGCATGAATGCAATA
1 GATGCATGAATGCAATA
816457 GATGCAATGAATGCAAT
1 GATGC-ATGAATGCAAT
816474 GAAAGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
GATGCATGAATGCAATA
Found at i:820483 original size:3 final size:3
Alignment explanation
Indices: 820464--820582 Score: 73
Period size: 3 Copynumber: 40.3 Consensus size: 3
820454 AAGATAATAC
* * * *
820464 AAT AAT -AT AAT AGT AAT AAT AAC AAT -AT AAT AAT AAT AGT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * **
820510 AGT AAT AAA AAT AAT -AT ATT AAAT AAT AGT AAT AAA AAT AGT GCT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * *
820555 AAT AGT AAT AAT AGT GAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
820583 GCACGATAAA
Statistics
Matches: 83, Mismatches: 29, Indels: 8
0.69 0.24 0.07
Matches are distributed among these distances:
2 6 0.07
3 75 0.90
4 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:820506 original size:23 final size:22
Alignment explanation
Indices: 820457--820544 Score: 60
Period size: 20 Copynumber: 4.2 Consensus size: 22
820447 ATAGGTAAAG
*
820457 ATAATACAATAATATAATAGTA
1 ATAATACAATAATATAATAATA
*
820479 ATAAT--AACAATATAATAATA
1 ATAATACAATAATATAATAATA
* * *
820499 ATAGT--AATGATAGTAATAAAA
1 ATAATACAATAATA-TAATAATA
* * *
820520 ATAATATATTAA-ATAATAGTA
1 ATAATACAATAATATAATAATA
820541 ATAA
1 ATAA
820545 AAATAGTGCT
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
20 22 0.42
21 21 0.40
22 6 0.12
23 3 0.06
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (22 bp):
ATAATACAATAATATAATAATA
Found at i:820693 original size:17 final size:18
Alignment explanation
Indices: 820650--820695 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
820640 TATAATACCT
820650 AAAATAT-AATAATAATG
1 AAAATATAAATAATAATG
820667 AAAATATAAATACATAA-G
1 AAAATATAAATA-ATAATG
820685 -AAATATAAATA
1 AAAATATAAATA
820696 GATGAATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 18 0.67
18 5 0.19
19 4 0.15
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (18 bp):
AAAATATAAATAATAATG
Found at i:820736 original size:3 final size:3
Alignment explanation
Indices: 820728--821091 Score: 108
Period size: 3 Copynumber: 122.3 Consensus size: 3
820718 ATAGATAAAA
* * * * * * * *
820728 AAT AAT AAT AAT AGT CAT AAT -AC AAT AGT AAT AGT AAT TAC AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * * **
820775 GAT AAT AGC AAT AA- AAT AA- GAT AAT AAT AAT AAT AAT AAC CGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
820821 AGT AGT AAT AAA AAT -AC AAT AAT AAT -AT ATT AAAT AACA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AA-T AAT AAT
* * * * *
820866 AAT AAT AAA AAT AATT AA- AA- AAT GAT AAT AGT AAT AAA AAT AAA
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * ** *
820910 AAT AAT AGT AAT GAT AAT ACATT AAG GAT AAT AGT -AT GTT AAG AAT
1 AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
820956 AAT AA- ATT AAT GAATT AAT AAC AA- AAC AGT AAGT AAAT AA- ACAC
1 AAT AAT AAT AAT -AA-T AAT AAT AAT AAT AAT AA-T -AAT AAT A-AT
* * * * *
821000 AAA AAT AA- AAT -AT AAT TAT AAT AGT AAT ATT AAC AA- AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
821045 AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAG AGAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
821091 A
1 A
821092 TATTAATTTA
Statistics
Matches: 252, Mismatches: 85, Indels: 48
0.65 0.22 0.12
Matches are distributed among these distances:
2 22 0.09
3 207 0.82
4 18 0.07
5 5 0.02
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:828078 original size:35 final size:35
Alignment explanation
Indices: 828038--828106 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
828028 GGGTGTGTGA
828038 TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGAG
*
828073 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGA
828107 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.49, T:0.17
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGAG
Found at i:828611 original size:17 final size:17
Alignment explanation
Indices: 828589--828636 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
828579 CCAGATTTTG
828589 ATACCCATATCTTTCTA
1 ATACCCATATCTTTCTA
*
828606 ATACCCATATCTTTCTG
1 ATACCCATATCTTTCTA
828623 ATACCCATATCTTT
1 ATACCCATATCTTT
828637 AACTTTCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.27, C:0.29, G:0.02, T:0.42
Consensus pattern (17 bp):
ATACCCATATCTTTCTA
Found at i:832189 original size:17 final size:17
Alignment explanation
Indices: 832167--832216 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
832157 TCCCAGGTTT
*
832167 TGATACTCATATCTTTC
1 TGATACCCATATCTTTC
832184 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
832201 TGATACCCATATCTTT
1 TGATACCCATATCTTT
832217 AACTTTCTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:849328 original size:20 final size:20
Alignment explanation
Indices: 849303--849342 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
849293 AAATCTTGAA
849303 AATTTTAATAATTAAATTAT
1 AATTTTAATAATTAAATTAT
**
849323 AATTTTTTTAATTAAATTAT
1 AATTTTAATAATTAAATTAT
849343 TAAAATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AATTTTAATAATTAAATTAT
Found at i:853382 original size:22 final size:23
Alignment explanation
Indices: 853357--853400 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
853347 AAAAAATAAC
*
853357 CAAAATGT-TATAATTTTTTTAT
1 CAAAATATATATAATTTTTTTAT
853379 CAAAATATATATAATTTTTTTA
1 CAAAATATATATAATTTTTTTA
853401 ATTTACGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (23 bp):
CAAAATATATATAATTTTTTTAT
Found at i:853560 original size:27 final size:27
Alignment explanation
Indices: 853492--853561 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
853482 CGCCAATGGG
* *
853492 ATTGGCGGCACCAAAGGTGTCAAAGCC
1 ATTGGCGGCACCAATGGTGCCAAAGCC
*
853519 ATTGGTGGCACCAATGGTGCCAATA-CC
1 ATTGGCGGCACCAATGGTGCCAA-AGCC
853546 ATTGGCGGCACCAATG
1 ATTGGCGGCACCAATG
853562 TATATTAGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.27, C:0.26, G:0.29, T:0.19
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGCC
Found at i:853613 original size:4 final size:4
Alignment explanation
Indices: 853604--853742 Score: 92
Period size: 4 Copynumber: 34.0 Consensus size: 4
853594 GAAGGAGAGG
* *
853604 GAAA GAAA GAAA GAAA GAAA GAAA GGAAG GAGAG GAAA GAAA G-AA -AAA
1 GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GA-AA GAAA GAAA GAAA GAAA
* * * *
853652 GAAG GAAA GAAAA GGGAA G-GA GAAGA GAAA AAAA GAAA GAAA G-AA G-AA
1 GAAA GAAA G-AAA -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA
*
853700 GAAAA GGAAA GGAGAA GAAA -AAA GAAA GAAA GAAG GAAA GAAA
1 G-AAA -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
853743 AGGAAAGGAG
Statistics
Matches: 111, Mismatches: 11, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
3 15 0.14
4 66 0.59
5 26 0.23
6 4 0.04
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:853643 original size:18 final size:17
Alignment explanation
Indices: 853593--853663 Score: 72
Period size: 18 Copynumber: 4.1 Consensus size: 17
853583 TGGGGGGACC
853593 AGAAGGAGAGGGAAAGAA
1 AGAAGGAGA-GGAAAGAA
* *
853611 AGAAAGA-AAGAAAGAA
1 AGAAGGAGAGGAAAGAA
853627 AGGAAGGAGAGGAAAGAA
1 A-GAAGGAGAGGAAAGAA
**
853645 AGAAAAAGAAGGAAAGAA
1 AGAAGGAG-AGGAAAGAA
853663 A
1 A
853664 AGGGAAGGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
16 8 0.18
17 11 0.25
18 25 0.57
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (17 bp):
AGAAGGAGAGGAAAGAA
Found at i:853646 original size:34 final size:34
Alignment explanation
Indices: 853594--853803 Score: 155
Period size: 34 Copynumber: 6.0 Consensus size: 34
853584 GGGGGGACCA
853594 GAAGGAGAGGGAAAGAAAGAAAGAAAGAAAGAAAG
1 GAAGGAGA-GGAAAGAAAGAAAGAAAGAAAGAAAG
*
853629 GAAGGAGAGGAAAGAAAGAAAAAGAAGGAAAGAAAAGG
1 GAAGGAGAGGAAAGAAAG--AAAGAAAGAAAG-AAA-G
*
853667 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAG
1 GAAGGAG-AG-GAAAGAAAGAAAGAAAG-A-AAG-AAAG
* *
853706 GAAAGGAGAAGAAA-AAAGAAAGAAAGAAGGAAAG
1 G-AAGGAGAGGAAAGAAAGAAAGAAAGAAAGAAAG
* * *
853740 AAAAGGAAAGG--AGAAGAGAAA-AAA-AAAGAAGAA
1 -GAAGGAGAGGAAAGAA-AGAAAGAAAGAAAGAA-AG
* * *
853773 GAAGAAGAGGGAAGAAGGAAA-AAA-AAAGAAA
1 GAAGGAGAGGAAAGAAAGAAAGAAAGAAAGAAA
853804 AGAAAAGGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 33
0.76 0.07 0.17
Matches are distributed among these distances:
32 14 0.10
33 19 0.13
34 30 0.21
35 10 0.07
36 12 0.08
37 15 0.10
38 19 0.13
39 6 0.04
40 21 0.14
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (34 bp):
GAAGGAGAGGAAAGAAAGAAAGAAAGAAAGAAAG
Found at i:853660 original size:40 final size:40
Alignment explanation
Indices: 853609--853775 Score: 134
Period size: 40 Copynumber: 4.2 Consensus size: 40
853599 AGAGGGAAAG
853609 AAAGAAAGAAAG-AAAGAAAGGAAGGAGAGGAAAGAAAGAA
1 AAAGAAAGAAAGAAAAGAAAGGAAGGAGA-GAAAGAAAGAA
* *
853649 AAAGAAGGAAAGAAAAG---GGAAGGAGA-AGAG-AA-AA
1 AAAGAAAGAAAGAAAAGAAAGGAAGGAGAGAAAGAAAGAA
853683 AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAA-AAAGAAA
1 AAAGAAAGAAAGAA-AAG-AAAGG-AAGGAG-AGAAAGAAAG-AA
* * * *
853727 GAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAGAA
1 -AAAGAAAGAAAGAAAA-GAAAGGA-AGGAGAGAAAGAAAGAA
*
853770 GAAGAA
1 AAAGAA
853776 GAAGAGGGAA
Statistics
Matches: 103, Mismatches: 8, Indels: 30
0.73 0.06 0.21
Matches are distributed among these distances:
34 15 0.15
35 5 0.05
36 3 0.03
38 9 0.09
39 2 0.02
40 17 0.17
41 5 0.05
42 9 0.09
43 7 0.07
44 17 0.17
45 14 0.14
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (40 bp):
AAAGAAAGAAAGAAAAGAAAGGAAGGAGAGAAAGAAAGAA
Found at i:853726 original size:45 final size:45
Alignment explanation
Indices: 853639--853793 Score: 158
Period size: 45 Copynumber: 3.5 Consensus size: 45
853629 GAAGGAGAGG
* * *
853639 AAAGAAAGAAA-AAGAAGGAAAGAAAAGG-GAAGGAGAAGAGAAAA
1 AAAGAAAGAAAGAAGAAGGAAAGGAAAGGAGAA-GAAAAAAGAAAA
* *
853683 AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAG
1 AAAGAAAGAAAGAAGAAGGAAAGGAAAGGAGAAGAAAAAAGAAAA
* *
853728 AAAGAAGGAAAGAA-AAGGAAAGGAGAA-GAGAAAAAAAAAGAAGAA
1 AAAGAAAGAAAGAAGAAGGAAAGGA-AAGGAGAAGAAAAAAGAA-AA
* **
853773 GAAG-AAGAGGGAAGAAGGAAA
1 AAAGAAAGAAAGAAGAAGGAAA
853794 AAAAAAGAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
44 40 0.43
45 50 0.54
46 3 0.03
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (45 bp):
AAAGAAAGAAAGAAGAAGGAAAGGAAAGGAGAAGAAAAAAGAAAA
Found at i:853743 original size:79 final size:78
Alignment explanation
Indices: 853594--853808 Score: 259
Period size: 79 Copynumber: 2.8 Consensus size: 78
853584 GGGGGGACCA
* * *
853594 GAAGGAG-AGGGAAAGAAAGAAAGAAAG-A-AAG-AAAGGAAGGAGAGGAAAGAAAG-AA-AAAG
1 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGGAAGGAGAAGAAA-AAAGAAAGAAAG
853653 AAGGAAAGAAAAGG
65 AAGGAAAGAAAAGG
853667 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAGAAAG
1 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGG-AAGGAGAAGAAAAAAGAAAGAAAG
853732 AAGGAAAGAAAAGG
65 AAGGAAAGAAAAGG
* * * *
853746 AAAGGAGAAGAG-AAAAAA-AAAG-AAGAAGAAGAAGAGGGAAGAAGGAAAAAAAAAGAAAAGAA
1 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAA-AAGGAAGGA-GAAGAAAAAAG-AAAGAA
853808 A
63 A
853809 AGGTAATTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
73 7 0.06
74 18 0.14
75 1 0.01
76 18 0.14
77 26 0.21
78 26 0.21
79 29 0.23
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (78 bp):
GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGGAAGGAGAAGAAAAAAGAAAGAAAGA
AGGAAAGAAAAGG
Found at i:853756 original size:16 final size:15
Alignment explanation
Indices: 853687--853788 Score: 69
Period size: 15 Copynumber: 7.1 Consensus size: 15
853677 AGAAAAAAAG
*
853687 AAAGAAAGAAGAAGA
1 AAAGAAAGGAGAAGA
853702 AAAGGAAAGGAGAAG-
1 AAA-GAAAGGAGAAGA
853717 AAA-AAA-GA-AAG-
1 AAAGAAAGGAGAAGA
853728 AAAG-AAGGA-AAGA
1 AAAGAAAGGAGAAGA
853741 AAAGGAAAGGAGAAGA
1 AAA-GAAAGGAGAAGA
**
853757 GAAA-AAAAAAGAAGA
1 -AAAGAAAGGAGAAGA
853772 AGAAGAAGAGG-GAAGA
1 A-AAGAA-AGGAGAAGA
853788 A
1 A
853789 GGAAAAAAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 8 0.11
12 7 0.10
13 6 0.08
14 2 0.03
15 22 0.31
16 22 0.31
17 4 0.06
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAAGAAAGGAGAAGA
Found at i:854590 original size:15 final size:15
Alignment explanation
Indices: 854570--854601 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
854560 GATGCGGCTA
854570 ATAAATTTAGAAATT
1 ATAAATTTAGAAATT
854585 ATAAATTTAGAAATT
1 ATAAATTTAGAAATT
854600 AT
1 AT
854602 GATATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (15 bp):
ATAAATTTAGAAATT
Found at i:858586 original size:3 final size:3
Alignment explanation
Indices: 858578--858618 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
858568 TCTTAATACT
858578 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
858619 TAATAATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:858959 original size:13 final size:13
Alignment explanation
Indices: 858925--858950 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
858915 TCACATCGGT
858925 CAGATTTTTTTTG
1 CAGATTTTTTTTG
858938 CAGATTTTTTTTG
1 CAGATTTTTTTTG
858951 ATATATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.15, T:0.62
Consensus pattern (13 bp):
CAGATTTTTTTTG
Found at i:859312 original size:29 final size:29
Alignment explanation
Indices: 859238--859298 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
859228 AAGTAATTAA
* *
859238 TATTATATATGAAATATATAAACTTATAT
1 TATTATATATAAAATATATAAACTTAAAT
859267 TATTATATATAAAATATATAAACTTAAAT
1 TATTATATATAAAATATATAAACTTAAAT
859296 TAT
1 TAT
859299 AATAAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (29 bp):
TATTATATATAAAATATATAAACTTAAAT
Found at i:859794 original size:22 final size:21
Alignment explanation
Indices: 859768--859822 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
859758 GAAAATCTTT
859768 AAATTTGAAAAAAAAATACAAA
1 AAATTT-AAAAAAAAATACAAA
* *
859790 AAATTATAAAAAAAAATAGAGA
1 AAATT-TAAAAAAAAATACAAA
*
859812 AAATTTTAAAA
1 AAATTTAAAAA
859823 TATATATTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.17
22 23 0.79
23 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (21 bp):
AAATTTAAAAAAAAATACAAA
Found at i:862664 original size:25 final size:23
Alignment explanation
Indices: 862631--862701 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 23
862621 GAGCTATATA
*
862631 TAACGGGAAGCTCATGTGAGTCATG
1 TAACGGGAAGCTCATGAGAG-C-TG
*
862656 TAACGGGAAGCTCATAAGAGCTG
1 TAACGGGAAGCTCATGAGAGCTG
* *
862679 TAATCAGGAAGCTCATGCGAGCT
1 TAA-CGGGAAGCTCATGAGAGCT
862702 AATATCGGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 5 0.12
24 17 0.43
25 18 0.45
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (23 bp):
TAACGGGAAGCTCATGAGAGCTG
Found at i:862758 original size:25 final size:25
Alignment explanation
Indices: 862730--862807 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
862720 AGAATCGTTA
* *
862730 ATCAGGAAGCTTATGAGAGCCAGAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
*
862755 ATCAGGAAGCTCGTGAGAGCCAAAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
* * *
862780 AACAGGAAGCTCAAGAGAGCCATAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
862805 ATC
1 ATC
862808 GATAAATACA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (25 bp):
ATCAGGAAGCTCATGAGAGCCAAAT
Found at i:863005 original size:24 final size:23
Alignment explanation
Indices: 862946--863006 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
862936 TAACGGAAAT
*
862946 CTCATGTGAGTCATGTAACAGGAAG
1 CTCATGTGAG-C-TGTAACAAGAAG
** *
862971 CTCATAAGAGCTGTAATCAATAAG
1 CTCATGTGAGCTGTAA-CAAGAAG
862995 CTCATGTGAGCT
1 CTCATGTGAGCT
863007 AATATCGGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
23 5 0.17
24 16 0.55
25 8 0.28
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (23 bp):
CTCATGTGAGCTGTAACAAGAAG
Done.