Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 30 of 126
Found at i:8606740 original size:2 final size:2
Alignment explanation
Indices: 8606733--8606759 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8606723 TAATAAATAA
8606733 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8606760 AAAGCTCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8609280 original size:18 final size:19
Alignment explanation
Indices: 8609257--8609292 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8609247 TTAAATTGAG
8609257 AAATATG-AAAATTGTGTT
1 AAATATGTAAAATTGTGTT
*
8609275 AAATATGTGAAATTGTGT
1 AAATATGTAAAATTGTGT
8609293 AATGTATGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (19 bp):
AAATATGTAAAATTGTGTT
Found at i:8609837 original size:25 final size:25
Alignment explanation
Indices: 8609772--8609841 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
8609762 TCGGACACAG
8609772 CACAGCTCGTATGAGCTTACCAATT
1 CACAGCTCGTATGAGCTTACCAATT
*
8609797 -TCAGCTCGTGA-GAGCTTACCAATT
1 CACAGCTCGT-ATGAGCTTACCAATT
* *
8609821 CACAGCTTGTATAAGCTTACC
1 CACAGCTCGTATGAGCTTACC
8609842 GTTATTCAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
24 22 0.58
25 16 0.42
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCAATT
Found at i:8611046 original size:12 final size:12
Alignment explanation
Indices: 8611031--8611057 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8611021 CTCCAATTTA
8611031 CACACGGCCTAG
1 CACACGGCCTAG
8611043 CACACGGCCTAG
1 CACACGGCCTAG
8611055 CAC
1 CAC
8611058 TCGGGCGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:8616708 original size:25 final size:25
Alignment explanation
Indices: 8616644--8616713 Score: 81
Period size: 24 Copynumber: 2.8 Consensus size: 25
8616634 GCGGACACAC
*
8616644 CACAGCTCGTATGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCAATT
** *
8616669 -TTAGCTCTTGA-GAGCTTACCAATT
1 CACAGCTCGT-ATGAGCTTACCAATT
8616693 CACAGCTCGTATGAGCTTACC
1 CACAGCTCGTATGAGCTTACC
8616714 GTTATTCAGC
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
24 19 0.54
25 16 0.46
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCAATT
Found at i:8616723 original size:25 final size:25
Alignment explanation
Indices: 8616646--8616726 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
8616636 GGACACACCA
8616646 CAGCTCGTATGAGCTTACCGATT-TT
1 CAGCTCGTATGAGCTTACCG-TTATT
* *
8616671 -AGCTCTTGA-GAGCTTACC--AATT
1 CAGCTCGT-ATGAGCTTACCGTTATT
8616693 CACAGCTCGTATGAGCTTACCGTTATT
1 --CAGCTCGTATGAGCTTACCGTTATT
8616720 CAGCTCG
1 CAGCTCG
8616727 GAGAAACTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
22 2 0.05
24 16 0.36
25 23 0.52
27 3 0.07
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGTTATT
Found at i:8637863 original size:32 final size:32
Alignment explanation
Indices: 8637792--8637867 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 32
8637782 TTTTAGTTTG
* * *
8637792 TTGGATTTTGAAATTATTATGTCTTGAATTTG
1 TTGGATATTGAAATTATTATGTCTTGAACTTA
* * *
8637824 TTAGATATTGAATTTATTATGT-TTTAAGCTTA
1 TTGGATATTGAAATTATTATGTCTTGAA-CTTA
8637856 TTGGATATTGAA
1 TTGGATATTGAA
8637868 GTGATTGACA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.51
Consensus pattern (32 bp):
TTGGATATTGAAATTATTATGTCTTGAACTTA
Found at i:8639263 original size:20 final size:20
Alignment explanation
Indices: 8639219--8639265 Score: 78
Period size: 19 Copynumber: 2.4 Consensus size: 20
8639209 CATCTAAATA
*
8639219 CTAGAAAAGTAAATCATTTT
1 CTAGAAAAATAAATCATTTT
8639239 C-AGAAAAATAAATCATTTT
1 CTAGAAAAATAAATCATTTT
8639258 CTAGAAAA
1 CTAGAAAA
8639266 CATTTTACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.30
Consensus pattern (20 bp):
CTAGAAAAATAAATCATTTT
Found at i:8649287 original size:31 final size:31
Alignment explanation
Indices: 8649249--8649309 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
8649239 TTGGTGTAAT
8649249 TATATACTTGAAACACTAATTGTGATTTAAA
1 TATATACTTGAAACACTAATTGTGATTTAAA
** *
8649280 TATATACTTGAAACTTTAATTTTGATTTAA
1 TATATACTTGAAACACTAATTGTGATTTAA
8649310 CCATACACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (31 bp):
TATATACTTGAAACACTAATTGTGATTTAAA
Found at i:8653039 original size:56 final size:55
Alignment explanation
Indices: 8652954--8653106 Score: 150
Period size: 57 Copynumber: 2.8 Consensus size: 55
8652944 TATTTTCCAT
*
8652954 ATTTTATAGTTTGGCCC-ATGTTTTCTAGATTTTATAGTTTTGCCCATATTTTTTAA
1 ATTTTATAGTTTGCCCCTAT-TTTT-TAGATTTTATAGTTTTGCCCATATTTTTTAA
* * * * *
8653010 ATTTTATAGTTCTGCCCCTATTTTTTAGATTTTTACAATTTTGTCCATGTTTTTTAG
1 ATTTTATAGTT-TGCCCCTATTTTTTAGA-TTTTATAGTTTTGCCCATATTTTTTAA
* * * * *
8653067 ATTTTACAATTT-CCCCTA-ATTTCAAATTTTATAGTTTTGC
1 ATTTTATAGTTTGCCCCTATTTTTTAGATTTTATAGTTTTGC
8653107 TCTTTTTTTT
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
53 11 0.14
54 5 0.06
55 6 0.08
56 16 0.20
57 40 0.50
58 2 0.03
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.54
Consensus pattern (55 bp):
ATTTTATAGTTTGCCCCTATTTTTTAGATTTTATAGTTTTGCCCATATTTTTTAA
Found at i:8653044 original size:29 final size:29
Alignment explanation
Indices: 8652955--8653071 Score: 130
Period size: 28 Copynumber: 4.1 Consensus size: 29
8652945 ATTTTCCATA
* * *
8652955 TTTTATAGTTTGGCCCATGTTTTCTAGA-
1 TTTTATAGTTTTGCCCATATTTTTTAGAT
*
8652983 TTTTATAGTTTTGCCCATATTTTTTA-AA
1 TTTTATAGTTTTGCCCATATTTTTTAGAT
* *
8653011 TTTTATAGTTCTGCCCCTATTTTTTAGAT
1 TTTTATAGTTTTGCCCATATTTTTTAGAT
* * * *
8653040 TTTTACAATTTTGTCCATGTTTTTTAGAT
1 TTTTATAGTTTTGCCCATATTTTTTAGAT
8653069 TTT
1 TTT
8653072 ACAATTTCCC
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
27 1 0.01
28 47 0.63
29 27 0.36
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.56
Consensus pattern (29 bp):
TTTTATAGTTTTGCCCATATTTTTTAGAT
Found at i:8653444 original size:34 final size:35
Alignment explanation
Indices: 8653406--8653504 Score: 96
Period size: 34 Copynumber: 2.9 Consensus size: 35
8653396 AAGCATGACT
*
8653406 TTTGCTACTGAATTGATCTGTTATAAGCAT-TTTA
1 TTTGCTACTGAATTGATCTGTTATAAGCATATTGA
* * * *
8653440 TTTGCTACTGTATTGAACTATTATAGGCATATTGA
1 TTTGCTACTGAATTGATCTGTTATAAGCATATTGA
* * *
8653475 -TTGCTA-TCATATTGTTCTGTTAAAAGCATA
1 TTTGCTACTGA-ATTGATCTGTTATAAGCATA
8653505 ATTAAATGCT
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
33 1 0.02
34 47 0.92
35 3 0.06
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.44
Consensus pattern (35 bp):
TTTGCTACTGAATTGATCTGTTATAAGCATATTGA
Found at i:8654675 original size:20 final size:20
Alignment explanation
Indices: 8654650--8654775 Score: 59
Period size: 20 Copynumber: 6.5 Consensus size: 20
8654640 AGGTTACACC
8654650 TTCATAATTTTTGGTATCCT
1 TTCATAATTTTTGGTATCCT
* * * *
8654670 TTCATAACTTTTGATACCCC
1 TTCATAATTTTTGGTATCCT
*
8654690 GTCATAATTATTT-GTAGT-C-
1 TTCATAATT-TTTGGTA-TCCT
* *
8654709 -TC-TAATTTTTGGTGTTCT
1 TTCATAATTTTTGGTATCCT
* *
8654727 CTCATAATTTTTTGTATGCC-
1 TTCATAATTTTTGGTAT-CCT
* *
8654747 CTCAGAA-TTTTGGATATCCT
1 TTCATAATTTTTGG-TATCCT
*
8654767 TTCAAAATT
1 TTCATAATT
8654776 AAGTTTTGAC
Statistics
Matches: 79, Mismatches: 16, Indels: 21
0.68 0.14 0.18
Matches are distributed among these distances:
16 4 0.05
17 8 0.10
18 2 0.03
19 9 0.11
20 51 0.65
21 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.48
Consensus pattern (20 bp):
TTCATAATTTTTGGTATCCT
Found at i:8655215 original size:20 final size:20
Alignment explanation
Indices: 8655179--8655216 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8655169 CCAAAAATTA
* *
8655179 TGAGGAAGTATCGAAATTGT
1 TGAGGAAGTACCAAAATTGT
8655199 TGAGGAAGTACCAAAATT
1 TGAGGAAGTACCAAAATT
8655217 TTTTAAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.26
Consensus pattern (20 bp):
TGAGGAAGTACCAAAATTGT
Found at i:8655247 original size:20 final size:20
Alignment explanation
Indices: 8655222--8655336 Score: 83
Period size: 20 Copynumber: 5.8 Consensus size: 20
8655212 AAATTTTTTA
8655222 AGGGAATACCAAAAAACATG
1 AGGGAATACCAAAAAACATG
*
8655242 AGGGAATA-CAAAAAA-TTG
1 AGGGAATACCAAAAAACATG
* *
8655260 TAAGTGAATACCAAAAAATATG
1 --AGGGAATACCAAAAAACATG
* ** **
8655282 A-GAAAGTGTCAAAAATTATG
1 AGGGAA-TACCAAAAAACATG
* *
8655302 AGAGAATACCAAATAACATG
1 AGGGAATACCAAAAAACATG
*
8655322 AGGGGATACCAAAAA
1 AGGGAATACCAAAAA
8655337 TTAGGAAGCA
Statistics
Matches: 71, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
18 2 0.03
19 9 0.13
20 49 0.69
21 9 0.13
22 2 0.03
ACGTcount: A:0.54, C:0.10, G:0.19, T:0.17
Consensus pattern (20 bp):
AGGGAATACCAAAAAACATG
Found at i:8655269 original size:40 final size:39
Alignment explanation
Indices: 8655220--8655339 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 39
8655210 CAAAATTTTT
* *
8655220 TAAGGGAATACCAAAAAACATGAGGGAATACAAAAAATTG
1 TAAGAGAATACCAAAAAACATGAGGGAATAC-AAAAATTA
* * * *
8655260 TAAGTGAATACCAAAAAATATGA-GAAAGTGTCAAAAATTA
1 TAAGAGAATACCAAAAAACATGAGGGAA-T-ACAAAAATTA
* * *
8655300 TGAGAGAATACCAAATAACATGAGGGGATACCAAAAATTA
1 TAAGAGAATACCAAAAAACATGAGGGAATA-CAAAAATTA
8655340 GGAAGCACTA
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
39 3 0.05
40 58 0.91
41 3 0.05
ACGTcount: A:0.53, C:0.10, G:0.18, T:0.18
Consensus pattern (39 bp):
TAAGAGAATACCAAAAAACATGAGGGAATACAAAAATTA
Found at i:8656228 original size:20 final size:21
Alignment explanation
Indices: 8656204--8656251 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
8656194 AAGGGTATAC
*
8656204 CAAAAAAATTCTAA-AAAGTA
1 CAAAAAAATTATAAGAAAGTA
*
8656224 -TAAAAAATTATAAGAAAGTA
1 CAAAAAAATTATAAGAAAGTA
8656244 CAAAAAAA
1 CAAAAAAA
8656252 ATATTACGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 11 0.48
20 6 0.26
21 6 0.26
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (21 bp):
CAAAAAAATTATAAGAAAGTA
Found at i:8656230 original size:19 final size:20
Alignment explanation
Indices: 8656206--8656250 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
8656196 GGGTATACCA
* *
8656206 AAAAAATTCTAA-AAAGTAT
1 AAAAAATTATAAGAAAGTAC
8656225 AAAAAATTATAAGAAAGTAC
1 AAAAAATTATAAGAAAGTAC
8656245 AAAAAA
1 AAAAAA
8656251 AATATTACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.69, C:0.04, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAAAATTATAAGAAAGTAC
Found at i:8664721 original size:8 final size:8
Alignment explanation
Indices: 8664698--8664726 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8664688 ACTGTCTCCC
8664698 TTATGTGT
1 TTATGTGT
8664706 TT-TGTGT
1 TTATGTGT
8664713 TTATGTGT
1 TTATGTGT
8664721 TTATGT
1 TTATGT
8664727 CAAACACTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.10, C:0.00, G:0.24, T:0.66
Consensus pattern (8 bp):
TTATGTGT
Found at i:8670572 original size:42 final size:42
Alignment explanation
Indices: 8670507--8670662 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
8670497 AAATCGTACA
*
8670507 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
8670549 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
8670591 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
8670635 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
8670663 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:8677907 original size:42 final size:42
Alignment explanation
Indices: 8677842--8677997 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
8677832 AAATCGTTCA
*
8677842 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
8677884 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
8677926 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
8677970 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
8677998 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:8683529 original size:98 final size:98
Alignment explanation
Indices: 8683342--8683538 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 98
8683332 GTACAATAAA
*
8683342 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* * * **
8683407 CCTTTAGAATCTCAAATTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
* *
8683440 ACTTTAAAAGAACATCCACTTATTCAAGATTTAAGAAATCATACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
8683505 CCTTTAAAATCCCAAACTCAGAATATTTTCTTT
66 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
8683538 A
1 A
8683539 TTATTTTTAA
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:8685192 original size:17 final size:17
Alignment explanation
Indices: 8685170--8685211 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
8685160 CAAATCTGCT
* * *
8685170 TTTGGGCTTCTGTTTGG
1 TTTGGGCCTCAGTTGGG
8685187 TTTGGGCCTCAGTTGGG
1 TTTGGGCCTCAGTTGGG
8685204 TTTGGGCC
1 TTTGGGCC
8685212 ACATCGGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.17, G:0.38, T:0.43
Consensus pattern (17 bp):
TTTGGGCCTCAGTTGGG
Found at i:8685961 original size:44 final size:44
Alignment explanation
Indices: 8685912--8686454 Score: 209
Period size: 44 Copynumber: 12.5 Consensus size: 44
8685902 GATCTGTTCT
*
8685912 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
8685956 CTGCAACTTCA-AGGAGATAGGAT-TGTCGGCTTTAATCTGCTCTA
1 CTGCAACTTCAGA-GAGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * ** * *
8686000 CTACAACTTCAGGGAGATAAGA-CTTGCCA-CCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATC-TG--AGGTTTTAATCTGCTC-CA
** *
8686045 CTGCAACTTCAG-GAGGATAAGA-CTTG-CTTTGCTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATC-TGAGGTT--TTAATCTGCTCCA
* * *** * *
8686090 CTGTAACTTCA-AGGAGATAAGA-CT-A-GATGCGATCTACT-CT
1 CTGCAACTTCAGA-GAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * **
8686130 CTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
8686174 CTGTAACTTCAGGGAGATAAGAT-TGTCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * * *** * *
8686218 TTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGT-TTTAATCTGCTC-CA
* * * * *
8686263 CTACAACTTCAG-GAGGATAAGA-CT-TGCTTACATATTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTGAGGTT--TTAATCTGCTCCA
* * * * * *** *
8686307 CTGCAACCTCAGGGAGACATGA-CT-A-GATGCGATCTGCT-CT
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* *
8686347 CTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * *
8686391 TTGCAACTTCAG-GAAGATAGGAT-T-ATTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAG-AGATAAGATCTGA--GGTTTTAATCTGCTCCA
* *
8686435 CTGCAACTTTAGGGAGATAA
1 CTGCAACTTCAGAGAGATAA
8686455 AACTCAATTT
Statistics
Matches: 371, Mismatches: 91, Indels: 74
0.69 0.17 0.14
Matches are distributed among these distances:
40 37 0.10
41 16 0.04
42 4 0.01
43 26 0.07
44 190 0.51
45 95 0.26
46 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
Found at i:8685978 original size:217 final size:218
Alignment explanation
Indices: 8685480--8686454 Score: 1425
Period size: 217 Copynumber: 4.5 Consensus size: 218
8685470 TGCTCCACTA
* * * *
8685480 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGTAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
8685545 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * * *
8685610 CCGCAGCTTTAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
8685675 AACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
8685698 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAAATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
8685763 GTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTTTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * *
8685828 CTGTAACTTCAGGAGGATAAGACTTGC-TTACATATTCGGCTCCACTGCAACCTT-AGGGAGATA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAA-CTTCAGGGAGATA
* **
8685891 TGACTAGATGCGATCTGTTCTCTG
195 AGACTAGATGCGATCTACTCTCTG
* *
8685915 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
8685980 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * *
8686045 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
8686110 GACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
8686133 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAAGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* *
8686198 GTCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * *
8686263 CTACAACTTCAGGAGGATAAGACTTGC-TTACATATTCTGCTCCACTGCAACCTCAGGGAGACAT
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
8686327 GACTAGATGCGATCTGCTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
8686350 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCATTGCAACTTCAGGAAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
8686415 ATTGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
8686455 AACTCAATTT
Statistics
Matches: 672, Mismatches: 82, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
217 339 0.50
218 333 0.50
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (218 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
GACTAGATGCGATCTACTCTCTG
Found at i:8686054 original size:45 final size:44
Alignment explanation
Indices: 8685518--8686323 Score: 225
Period size: 44 Copynumber: 18.5 Consensus size: 44
8685508 TTAATCCGCT
* * * * *
8685518 TCACTGTAACTTCAGGGAGATAGGA-TTGTC-GACTTTAATCTGC
1 TCACTGCAACTTCAGGGAGATAAGACTTGCCAG-CTTCAGTCTGC
* * * *
8685561 TCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * * **
8685607 TCACCGCAGCTTTA-GGAGGAAAAGACTTGCTTTGCTT-AGTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * *
8685651 TCCACTGCAACTTCAGGGAGATAAAAC-T---AGATGC-GATCTAC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * * **
8685692 TCTCTGCATCTTCAGAGAGATAAGA-TCTG--AGATTTTAATCCAC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCAG-CTTCAGTCTGC
* * * * * * *
8685735 TCCACTGTAACTTCAGGGAAATAGGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* * * *
8685779 TCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTTTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * * *
8685825 TCACTGTAACTTCA-GGAGGATAAGACTTGCTTA-CAT-ATTCGGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * *
8685868 TCCACTGCAACCTT-AGGGAGATATGAC-T---AGATGC-GATCTGT
1 T-CACTGCAA-CTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * *
8685909 TCTCTGCAACTTCAGAGAGATAAGA-TCTG--AGGTTTTAATCCGC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCA-GCTTCAGTCTGC
* * * * * *
8685952 TCCACTGCAACTTCAAGGAGATAGGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* *
8685996 TCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCC
1 TC-ACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
**
8686042 TCACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT-AGTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * * *
8686086 TCCACTGTAACTTCAAGGAGATAAGAC-T---AGATGC-GATCTAC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * * **
8686127 TCTCTGCATCTTCAGAGAGATAAGA-TCTG--AGATTTTAATCCAC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCAG-CTTCAGTCTGC
* * * * *
8686170 TCCACTGTAACTTCAGGGAGATAAGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* * *
8686214 TCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * *
8686260 TCACTACAACTTCA-GGAGGATAAGACTTGCTTA-CAT-ATTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
*
8686303 TCCACTGCAACCTCAGGGAGA
1 T-CACTGCAACTTCAGGGAGA
8686324 CATGACTAGA
Statistics
Matches: 571, Mismatches: 132, Indels: 119
0.69 0.16 0.14
Matches are distributed among these distances:
39 4 0.01
40 62 0.11
41 17 0.03
42 5 0.01
43 31 0.05
44 231 0.40
45 198 0.35
46 23 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
TCACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
Found at i:8686290 original size:435 final size:435
Alignment explanation
Indices: 8685480--8686454 Score: 1628
Period size: 435 Copynumber: 2.2 Consensus size: 435
8685470 TGCTCCACTA
* * * * * *
8685480 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGTAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
* *
8685545 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* * *
8685610 CCGCAGCTTTAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
8685675 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
* *
8685740 TGTAACTTCAGGGAAATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* **
8685805 TTTGCCATCTTCAGTTTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
* * *
8685870 CACTGCAACCTTAGGGAGATATGACTAGATGCGATCTGTTCTCTG
391 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
8685915 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
* *
8685980 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* * *
8686045 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
*
8686110 GACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
* *
8686175 TGTAACTTCAGGGAGATAAGATTGTCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
*
8686240 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCTGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
8686305 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
391 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
* *
8686350 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCATTGCAACTTC-AGGAAGATAGGAT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGG-AGATAGGAT
* * * *
8686414 TATTGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAA
65 TGTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
8686455 AACTCAATTT
Statistics
Matches: 504, Mismatches: 35, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
434 3 0.01
435 501 0.99
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (435 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
Found at i:8698020 original size:98 final size:98
Alignment explanation
Indices: 8697846--8698042 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
8697836 GTACAATAAA
*
8697846 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* * *
8697911 CCTTTAGAATCCCAAATTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
*
8697944 ACTTTAAAAGAACATCCACTTATCTAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
8698009 CCTTTAAAATCCCAAACTCGGAATATTTTCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
8698042 A
1 A
8698043 TTATTTTTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.30
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:8698854 original size:33 final size:33
Alignment explanation
Indices: 8698812--8698878 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
8698802 GGGCCAAAAG
*
8698812 CATAATTTGCCCCTCTGCTCAAAAACGCGCGGA
1 CATAATTTGCCCCTCCGCTCAAAAACGCGCGGA
* *
8698845 CATAATTTGCCCCTCCGTTCAAAAACGCGTGGA
1 CATAATTTGCCCCTCCGCTCAAAAACGCGCGGA
8698878 C
1 C
8698879 CCTAGGCCGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (33 bp):
CATAATTTGCCCCTCCGCTCAAAAACGCGCGGA
Found at i:8703814 original size:3 final size:3
Alignment explanation
Indices: 8703806--8703831 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8703796 AGATTGTTGG
8703806 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
8703832 AGGAGTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8705512 original size:14 final size:16
Alignment explanation
Indices: 8705486--8705519 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8705476 ATTGTTTGGA
8705486 TATTGTATAATTTT-T
1 TATTGTATAATTTTGT
8705501 TATTGT-TAATTTTGT
1 TATTGTATAATTTTGT
8705516 TATT
1 TATT
8705520 ATTTTAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (16 bp):
TATTGTATAATTTTGT
Found at i:8708874 original size:20 final size:21
Alignment explanation
Indices: 8708848--8708893 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
8708838 AGCCGGGATC
8708848 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
*
8708869 -CTAACTAATACTAATTTAAT
1 ACTAACTAATACTAATCTAAT
8708889 ACTAA
1 ACTAA
8708894 TAGAATAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:8708890 original size:11 final size:11
Alignment explanation
Indices: 8708848--8708894 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
8708838 AGCCGGGATC
8708848 ACTAA-CTAAT
1 ACTAATCTAAT
8708858 ACTAATCTAAT
1 ACTAATCTAAT
8708869 -CTAA-CTAAT
1 ACTAATCTAAT
*
8708878 ACTAATTTAAT
1 ACTAATCTAAT
8708889 ACTAAT
1 ACTAAT
8708895 AGAATAGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.39
11 15 0.45
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:8708909 original size:22 final size:22
Alignment explanation
Indices: 8708884--8708927 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8708874 TAATACTAAT
8708884 TTAATACTAATA-GAATAGAATA
1 TTAAT-CTAATACGAATAGAATA
*
8708906 TTAATCTAATACTAATAGAATA
1 TTAATCTAATACGAATAGAATA
8708928 GAAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (22 bp):
TTAATCTAATACGAATAGAATA
Found at i:8708910 original size:27 final size:27
Alignment explanation
Indices: 8708875--8708930 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
8708865 TAATCTAACT
*
8708875 AATACTAATTTAATACTAATAGAATAG
1 AATACTAATCTAATACTAATAGAATAG
*
8708902 AATATTAATCTAATACTAATAGAATAG
1 AATACTAATCTAATACTAATAGAATAG
8708929 AA
1 AA
8708931 AAAATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (27 bp):
AATACTAATCTAATACTAATAGAATAG
Found at i:8708915 original size:5 final size:6
Alignment explanation
Indices: 8708852--8708922 Score: 50
Period size: 6 Copynumber: 13.2 Consensus size: 6
8708842 GGGATCACTA
*
8708852 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -TTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* * *
8708895 A-GAAT A-GAAT ATTAAT -CTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT A
8708923 GAATAGAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
4 3 0.06
5 25 0.46
6 26 0.48
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (6 bp):
ACTAAT
Found at i:8708956 original size:18 final size:18
Alignment explanation
Indices: 8708913--8708963 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
8708903 ATATTAATCT
*
8708913 AATACTAATAGAATAG-A
1 AATACTAATATAATAGAA
8708930 AA-A--AATATAATAGAA
1 AATACTAATATAATAGAA
8708945 AATACTAATATAATAGAA
1 AATACTAATATAATAGAA
8708963 A
1 A
8708964 GAAAAGAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 9 0.31
15 3 0.10
16 2 0.07
17 2 0.07
18 13 0.45
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.24
Consensus pattern (18 bp):
AATACTAATATAATAGAA
Found at i:8712368 original size:40 final size:40
Alignment explanation
Indices: 8712313--8713307 Score: 1864
Period size: 40 Copynumber: 24.9 Consensus size: 40
8712303 GCATGAGCAT
*
8712313 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712353 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712393 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712433 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712473 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712513 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712553 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712593 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712633 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712673 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712713 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712753 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712793 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712833 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712873 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712913 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712953 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8712993 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8713033 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
8713073 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
*
8713113 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
* *
8713153 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
* * * *
8713193 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
* *
8713233 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
* * * *
8713273 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGT
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGT
8713308 GCTTGCGGTT
Statistics
Matches: 939, Mismatches: 16, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 939 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTCCGAG
Found at i:8720162 original size:63 final size:63
Alignment explanation
Indices: 8720063--8720251 Score: 360
Period size: 63 Copynumber: 3.0 Consensus size: 63
8720053 TATGGGATAC
* *
8720063 CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
1 CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
8720126 CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
1 CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
8720189 CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
1 CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
8720252 TAGAGATCAA
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 124 1.00
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (63 bp):
CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
Found at i:8721151 original size:26 final size:26
Alignment explanation
Indices: 8721114--8721175 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
8721104 CATTTGAAAG
8721114 TCCTAG-TTTTCGACGACTGTCTCTT
1 TCCTAGATTTTCGACGACTGTCTCTT
*
8721139 TCCTAGATTTTCGACGATTGTCTCTT
1 TCCTAGATTTTCGACGACTGTCTCTT
8721165 TCCTAGATTTT
1 TCCTAGATTTT
8721176 TCTTATTGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 6 0.17
26 29 0.83
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.47
Consensus pattern (26 bp):
TCCTAGATTTTCGACGACTGTCTCTT
Found at i:8722808 original size:41 final size:41
Alignment explanation
Indices: 8722745--8723258 Score: 893
Period size: 41 Copynumber: 12.5 Consensus size: 41
8722735 TTTAACATAT
* * * *
8722745 TCACCAGCACTTAGCCTACTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
8722786 TCATCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
8722827 TCACCGGCACTCAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
8722868 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
8722909 TCACCGGCACTCAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
8722950 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
8722991 TCACCGGCACTCAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
8723032 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
8723073 TCACCGGCACTCAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
8723114 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
8723155 TCACCGGCACTCAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
8723196 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
8723237 TCACCGGCACTTAGCCTGCTAG
1 TCACCGGCACTTAGCCTGCTAG
8723259 ACTTAAAGTC
Statistics
Matches: 447, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 447 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
Found at i:8723967 original size:23 final size:24
Alignment explanation
Indices: 8723940--8724000 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 24
8723930 ACAAGAATTT
8723940 ATACATATATATA-TTCGAACATG
1 ATACATATATATATTTCGAACATG
8723963 ATACATATATATATTTTCGAACATG
1 ATACATATATATA-TTTCGAACATG
8723988 ATACATATATATA
1 ATACATATATATA
8724001 CATATCATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 13 0.36
25 23 0.64
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (24 bp):
ATACATATATATATTTCGAACATG
Found at i:8725049 original size:14 final size:15
Alignment explanation
Indices: 8725030--8725059 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8725020 ACACGAAATT
8725030 TTCACACA-AATAAA
1 TTCACACATAATAAA
8725044 TTCACACATAATAAA
1 TTCACACATAATAAA
8725059 T
1 T
8725060 AGATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:8730821 original size:41 final size:41
Alignment explanation
Indices: 8730764--8730910 Score: 240
Period size: 41 Copynumber: 3.6 Consensus size: 41
8730754 AACATATTCG
*
8730764 CCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCA
1 CCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCA
*
8730805 CCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCA
1 CCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCA
* * *
8730846 CTGGCACTTAGCCTGCTAGGTTTATAACCTGATTTAGATCA
1 CCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCA
*
8730887 CCGGCACTTAGCCTGCTAGACTTA
1 CCGGCACTTAGCCTGCTAGGCTTA
8730911 AAGTTCGAAT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 99 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (41 bp):
CCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCA
Found at i:8731598 original size:23 final size:24
Alignment explanation
Indices: 8731571--8731631 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 24
8731561 ACAAGAATTT
8731571 ATACATATATATA-TTCGAACATG
1 ATACATATATATATTTCGAACATG
8731594 ATACATATATATATTTTCGAACATG
1 ATACATATATATA-TTTCGAACATG
8731619 ATACATATATATA
1 ATACATATATATA
8731632 CATATCATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 13 0.36
25 23 0.64
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (24 bp):
ATACATATATATATTTCGAACATG
Found at i:8732681 original size:14 final size:15
Alignment explanation
Indices: 8732662--8732691 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8732652 ACACGAAATT
8732662 TTCACACA-AATAAA
1 TTCACACATAATAAA
8732676 TTCACACATAATAAA
1 TTCACACATAATAAA
8732691 T
1 T
8732692 AGATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:8738514 original size:26 final size:26
Alignment explanation
Indices: 8738480--8738532 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8738470 TTTTAGTTTA
8738480 TTTTCTTTTTGACCTTTTAAATTCTT
1 TTTTCTTTTTGACCTTTTAAATTCTT
8738506 TTTTCTTTTTGACCTTTTAAATTCTT
1 TTTTCTTTTTGACCTTTTAAATTCTT
8738532 T
1 T
8738533 CTTGTTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.15, C:0.15, G:0.04, T:0.66
Consensus pattern (26 bp):
TTTTCTTTTTGACCTTTTAAATTCTT
Found at i:8738540 original size:26 final size:26
Alignment explanation
Indices: 8738482--8738540 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
8738472 TTAGTTTATT
*
8738482 TTCTTTTTGACCTTTTAAATTCTTTT
1 TTCTTTTTGACCTTTTAAATTCTTTC
8738508 TTCTTTTTGACCTTTTAAATTCTTTC
1 TTCTTTTTGACCTTTTAAATTCTTTC
*
8738534 TTGTTTT
1 TTCTTTT
8738541 CCTCTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.14, C:0.15, G:0.05, T:0.66
Consensus pattern (26 bp):
TTCTTTTTGACCTTTTAAATTCTTTC
Found at i:8746079 original size:124 final size:124
Alignment explanation
Indices: 8745858--8746112 Score: 361
Period size: 124 Copynumber: 2.1 Consensus size: 124
8745848 AAATAGTGGG
** * ***
8745858 AAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCACCCTCGTGGACGCGATT
8745923 TCGCTACAGTGGTCATGTAAGAAATG-ATTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTGGTCATGTAAGAAATGAATTTTTTTTGACG-TTTCTGAGCAAATAGTATA
* * * *
8745982 AAATCGCTGATACCAGGATGCTATATGAGGAGAAATTGTGAAATCGCACCCTCGTGGTCGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCACCCTCGTGGACGCGATT
* * *
8746047 TCGCTACAGTTGGTCATGTAGGAAAT-AATTTTTTTTGACGTTTCTGAGCAAATAGTGTC
66 TCGCTACAG-TGGTCATGTAAGAAATGAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
8746106 AAATCGC
1 AAATCGC
8746113 GCCCTCGTGG
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 88 0.76
125 28 0.24
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (124 bp):
AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCACCCTCGTGGACGCGATT
TCGCTACAGTGGTCATGTAAGAAATGAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:8747284 original size:23 final size:23
Alignment explanation
Indices: 8747258--8747438 Score: 192
Period size: 23 Copynumber: 7.9 Consensus size: 23
8747248 TACCACGTCG
*
8747258 TTAGGTTAGGGTTTTCAATTAAA
1 TTAGGTTAGGGTTTTTAATTAAA
8747281 TTAGGTTAGGGTTAGGGTTT--TT-AA
1 TTAGGTTAGGGTT----TTTAATTAAA
** *
8747305 TTAAATTA-GGTTTTTAATTAAG
1 TTAGGTTAGGGTTTTTAATTAAA
* *
8747327 TTATGTTATGGTTTTTAATTAAA
1 TTAGGTTAGGGTTTTTAATTAAA
*
8747350 TTAGGTTAGGGTTTTCAATTAAA
1 TTAGGTTAGGGTTTTTAATTAAA
8747373 TTAGGTTAGGGTTTTTAATT-AA
1 TTAGGTTAGGGTTTTTAATTAAA
* *
8747395 GTAGGGTTAGGGTTTTTAATTAAG
1 TTA-GGTTAGGGTTTTTAATTAAA
*
8747419 TTATGTTAGGGTTTTTAATT
1 TTAGGTTAGGGTTTTTAATT
8747439 TAAACGACAT
Statistics
Matches: 133, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
19 3 0.02
21 2 0.02
22 11 0.08
23 102 0.77
24 11 0.08
25 2 0.02
27 2 0.02
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.49
Consensus pattern (23 bp):
TTAGGTTAGGGTTTTTAATTAAA
Found at i:8747293 original size:29 final size:28
Alignment explanation
Indices: 8747257--8747316 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 28
8747247 TTACCACGTC
8747257 GTTAGGTTAGGGTTTTCAATTAAATTAG
1 GTTAGGTTAGGGTTTTCAATTAAATTAG
*
8747285 GTTAGGGTTAGGGTTTTTAATTAAATTAG
1 GTTA-GGTTAGGGTTTTCAATTAAATTAG
8747314 GTT
1 GTT
8747317 TTTAATTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.45
Consensus pattern (28 bp):
GTTAGGTTAGGGTTTTCAATTAAATTAG
Found at i:8747318 original size:17 final size:17
Alignment explanation
Indices: 8747296--8747356 Score: 68
Period size: 17 Copynumber: 3.2 Consensus size: 17
8747286 TTAGGGTTAG
8747296 GGTTTTTAATTAAATTA
1 GGTTTTTAATTAAATTA
8747313 GGTTTTTAATTAAGTTATGTTA
1 GGTTTTTAATTAA---A--TTA
8747335 TGGTTTTTAATTAAATTA
1 -GGTTTTTAATTAAATTA
8747353 GGTT
1 GGTT
8747357 AGGGTTTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
17 17 0.45
18 3 0.08
20 2 0.05
22 3 0.08
23 13 0.34
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (17 bp):
GGTTTTTAATTAAATTA
Found at i:8747924 original size:23 final size:23
Alignment explanation
Indices: 8747898--8748535 Score: 431
Period size: 23 Copynumber: 25.9 Consensus size: 23
8747888 TTTTTAATTA
8747898 AATTAAATTA-GCTTAGGGTTTTT
1 AATTAAATTATG-TTAGGGTTTTT
*
8747921 AATTAAGTTATGTTAGGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
* * *
8747944 AGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
1 A----ATTAAATT-A--TG--TTAGGGTTTTT
* * *
8747976 AATTTAATTAGGTTAGGGTTTTC
1 AATTAAATTATGTTAGGGTTTTT
*
8747999 AATTAAATTAGGTTAGGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
* *
8748022 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTA-TGTTAGGGTTTTT
* *
8748045 AATTAAGTTATGTTATGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
* *
8748068 AATTAAATTAGGTTAGGGTTTTC
1 AATTAAATTATGTTAGGGTTTTT
*
8748091 AATTAAATTAGGTTAGGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
* *
8748114 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTA-TGTTAGGGTTTTT
* *
8748137 AATTAAGTTATGTTATGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
* *
8748160 AATTAAATTAGGTTAGGGTTTTC
1 AATTAAATTATGTTAGGGTTTTT
*
8748183 AATTAAATTAGGTTAGGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
* *
8748206 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTA-TGTTAGGGTTTTT
*
8748229 AATTAAGTTATGTTAGGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
*
8748252 AATTTAATTAAGTTAGGTTAGGGTTTTT
1 AA-TT-A--AA-TTATGTTAGGGTTTTT
* *
8748280 AATTTAATTAAGTTAGGTTAGGTTTTTT
1 AA-TT-A--AA-TTATGTTAGGGTTTTT
*
8748308 AATTAAGTTATGTTAGGGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
* *
8748331 AATTAAATTAGGTTAGAGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
*
8748354 AATTAAATTAGGTTAGGGTTAGGGATTTT
1 AATTAAATTA---T---GTTAGGGTTTTT
* *
8748383 AATTAAAATAGGTTAGGGTTAGGGTTTT
1 AATTAAATTATGTTAGGG-T----TTTT
* * *
8748411 CATGTAAAATAGGTTAGGGTTGGGGTTTTT
1 AAT-T-A-A-A--TTA-TGTTAGGGTTTTT
* *
8748441 AATTAAATTAGGTTAGAGTTTTT
1 AATTAAATTATGTTAGGGTTTTT
8748464 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATTAAATTA---T---GTTAGGGTTTTT
* *
8748493 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTA-TGTTAGGGTTTTT
*
8748516 AATTAAATTAGGTTAGGGTT
1 AATTAAATTATGTTAGGGTT
8748536 AGGGTTTTTT
Statistics
Matches: 507, Mismatches: 62, Indels: 92
0.77 0.09 0.14
Matches are distributed among these distances:
22 12 0.02
23 331 0.65
24 20 0.04
25 1 0.00
26 2 0.00
27 10 0.02
28 63 0.12
29 36 0.07
30 8 0.02
31 1 0.00
32 13 0.03
34 3 0.01
35 7 0.01
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (23 bp):
AATTAAATTATGTTAGGGTTTTT
Found at i:8747951 original size:32 final size:32
Alignment explanation
Indices: 8747910--8747976 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
8747900 TTAAATTAGC
8747910 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTT
1 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTT
8747942 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTT
1 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTT
8747974 TTA
1 TTA
8747977 ATTTAATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (32 bp):
TTAGGGTTTTTAATTAAGTTATGTTAGGGTTT
Found at i:8747997 original size:46 final size:46
Alignment explanation
Indices: 8747942--8748535 Score: 532
Period size: 46 Copynumber: 12.2 Consensus size: 46
8747932 GTTAGGGTTT
*
8747942 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAGG
* * *
8747988 TTAGGGTTTTCAATTAAATTAGGTTAGGGTTTTTAA-TTAAGTAGGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTA-GG
* * *
8748034 TTAGGGTTTTTAATTAAGTTATGTTATGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAGG
* * *
8748080 TTAGGGTTTTCAATTAAATTAGGTTAGGGTTTTTAA-TTAAGTAGGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTA-GG
* * *
8748126 TTAGGGTTTTTAATTAAGTTATGTTATGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAGG
* * *
8748172 TTAGGGTTTTCAATTAAATTAGGTTAGGGTTTTTAA-TTAAGTAGGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTA-GG
*
8748218 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAAGTTAGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAA--T--TTAA-TTAGG
* *
8748269 TTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTTAA-TTAAGTTATG
1 TTAGGG---TT--TTTAATTAAGTTAGGTTAGGGTTTTTAATTTAA-TTAGG
* * *
8748320 TTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAGG
** *
8748366 TTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGG
1 TTAGGG-T-----TTTTAATT---A-A-GTTA-GGTTAGGG-TTT--T-TAATTTA-ATTA-GG
* * * *
8748430 TTGGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAA-T---TTA-ATTA-GG
*
8748482 TTAGGGTTTTTAATTAAG-TAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAGTTA-GGTTAGGGTTTTTAATTTAATTAGG
8748528 TTAGGGTT
1 TTAGGGTT
8748536 AGGGTTTTTT
Statistics
Matches: 452, Mismatches: 56, Indels: 80
0.77 0.10 0.14
Matches are distributed among these distances:
45 16 0.04
46 249 0.55
47 17 0.04
48 7 0.02
49 1 0.00
51 33 0.07
52 57 0.13
53 3 0.01
54 3 0.01
55 2 0.00
56 27 0.06
57 3 0.01
58 15 0.03
59 3 0.01
61 1 0.00
62 4 0.01
63 4 0.01
64 7 0.02
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (46 bp):
TTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAGG
Found at i:8748047 original size:92 final size:92
Alignment explanation
Indices: 8747942--8748373 Score: 677
Period size: 92 Copynumber: 4.6 Consensus size: 92
8747932 GTTAGGGTTT
*
8747942 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTCAATTAAAT
1 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTCAATTAAAT
8748007 TAGGTTAGGGTTTTTAATTAAGTAGGG
66 TAGGTTAGGGTTTTTAATTAAGTAGGG
*
8748034 TTAGGGTTTTTAATTAAGTTATGTTATGGTTTTTAATTAAATTAGGTTAGGGTTTTCAATTAAAT
1 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTCAATTAAAT
8748099 TAGGTTAGGGTTTTTAATTAAGTAGGG
66 TAGGTTAGGGTTTTTAATTAAGTAGGG
*
8748126 TTAGGGTTTTTAATTAAGTTATGTTATGGTTTTTAATTAAATTAGGTTAGGGTTTTCAATTAAAT
1 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTCAATTAAAT
8748191 TAGGTTAGGGTTTTTAATTAAGTAGGG
66 TAGGTTAGGGTTTTTAATTAAGTAGGG
*
8748218 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGGTTTTTAAT
1 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAA-TT-A--AA-TTAGGTTAGGGTTTTCAA-
* *
8748283 TTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTTA-TG
60 TT-A--AA-TTAGGTTAGGGTTTTTAATTAAG-TAGGG
* * *
8748320 TTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATTAAATTAGGTTAGGGTT
1 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
8748374 AGGGATTTTA
Statistics
Matches: 320, Mismatches: 9, Indels: 17
0.92 0.03 0.05
Matches are distributed among these distances:
92 217 0.68
93 2 0.01
94 1 0.00
96 2 0.01
97 30 0.09
98 4 0.01
99 1 0.00
100 1 0.00
101 4 0.01
102 56 0.17
103 2 0.01
ACGTcount: A:0.28, C:0.01, G:0.22, T:0.49
Consensus pattern (92 bp):
TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTCAATTAAAT
TAGGTTAGGGTTTTTAATTAAGTAGGG
Found at i:8750709 original size:14 final size:15
Alignment explanation
Indices: 8750692--8750725 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8750682 AATAAATATC
8750692 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
8750706 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
8750721 TAAAA
1 TAAAA
8750726 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:8750952 original size:22 final size:22
Alignment explanation
Indices: 8750922--8750963 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8750912 ATTTGGAGAT
*
8750922 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
8750944 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
8750964 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:8750993 original size:22 final size:22
Alignment explanation
Indices: 8750965--8751056 Score: 107
Period size: 22 Copynumber: 4.2 Consensus size: 22
8750955 ATTTGAGAGT
8750965 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
* * *
8750987 ATAAGAGAAATTTT-GAAGGGAA
1 TTGAGAG-AATTTTGGAAGGAAA
*
8751009 TTGAGAGAATTTTTGAAAGG-AA
1 TTGAGAGAA-TTTTGGAAGGAAA
*
8751031 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
8751053 TTGA
1 TTGA
8751057 TATTGAATTT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
21 10 0.17
22 38 0.66
23 10 0.17
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:8751005 original size:52 final size:51
Alignment explanation
Indices: 8750913--8751015 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 51
8750903 TTAATATGGA
* * * * *
8750913 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAAATAAGAGAATTTTGGAAGGGAA-TTGAGAG
8750964 TTTGAGAGAATTTTGGAAGGAAAATAAGAGAAATTTT-GAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAAATAAGAG-AATTTTGGAAGGGAATTGAGAG
8751016 AATTTTTGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
51 4 0.09
52 31 0.70
53 9 0.20
ACGTcount: A:0.37, C:0.00, G:0.32, T:0.31
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAAATAAGAGAATTTTGGAAGGGAATTGAGAG
Found at i:8751014 original size:44 final size:44
Alignment explanation
Indices: 8750965--8751056 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
8750955 ATTTGAGAGT
* *
8750965 TTGAGAGAA-TTTTGGAAGGAAAATAAGAGAAATTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAAGG-AAATAAGAGAAATTTTGAAGGAAA
* * *
8751009 TTGAGAGAATTTTTGAAAGGAATTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAAGGAAATAAGAGAAATTTTGAAGGAAA
8751053 TTGA
1 TTGA
8751057 TATTGAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 33 0.79
45 9 0.21
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.29
Consensus pattern (44 bp):
TTGAGAGAATTTTTGAAAGGAAATAAGAGAAATTTTGAAGGAAA
Found at i:8756631 original size:22 final size:22
Alignment explanation
Indices: 8756600--8756642 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8756590 AGCAAAGATC
* * *
8756600 AAAACGTGCTACGAAGTAGAGG
1 AAAACATGCTACAAAGCAGAGG
8756622 AAAACATGCTACAAAGCAGAG
1 AAAACATGCTACAAAGCAGAG
8756643 TGATTTTTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.16, G:0.26, T:0.12
Consensus pattern (22 bp):
AAAACATGCTACAAAGCAGAGG
Found at i:8759704 original size:21 final size:19
Alignment explanation
Indices: 8759667--8759741 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
8759657 AATCATATCT
8759667 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
8759686 TCCAAGATTGCATATATCATG
1 TCTAAGATTGC--ATATCATA
8759707 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8759726 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
8759742 CTTGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 33 0.66
21 17 0.34
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8764684 original size:20 final size:20
Alignment explanation
Indices: 8764656--8764702 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
8764646 TAGATACAAA
* *
8764656 TTTAATTTT-AGTTATTTTAT
1 TTTATTTTTCAGTTA-TTAAT
*
8764676 TTTATTTTTCGGTTATTAAT
1 TTTATTTTTCAGTTATTAAT
8764696 TTTATTT
1 TTTATTT
8764703 CAATTTCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (20 bp):
TTTATTTTTCAGTTATTAAT
Found at i:8770245 original size:22 final size:21
Alignment explanation
Indices: 8770226--8770272 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
8770216 TTTTAAAATA
8770226 AAATAAACCTAAACTAAAAACCT
1 AAATAAA-CTAAACTAAAAA-CT
* *
8770249 AAATATACTAAACTAAAACCT
1 AAATAAACTAAACTAAAAACT
8770270 AAA
1 AAA
8770273 AATGGCTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 11 0.50
23 6 0.27
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (21 bp):
AAATAAACTAAACTAAAAACT
Found at i:8772386 original size:29 final size:29
Alignment explanation
Indices: 8772348--8772539 Score: 131
Period size: 29 Copynumber: 6.6 Consensus size: 29
8772338 CCTTTCCGAA
8772348 GATAGCCACAAA-GCATTCCTTTTAACAGT
1 GATAGCCACAAAGGC-TTCCTTTTAACAGT
*
8772377 GATAGCCACAAAGGCTTCCTTTTAACAGA
1 GATAGCCACAAAGGCTTCCTTTTAACAGT
* * * * *
8772406 GAT-CCTCCCAAAGGCTTTCTTATAACAGA
1 GATAGC-CACAAAGGCTTCCTTTTAACAGT
* * * *
8772435 GATCGCCATAAAGGCTTCCTTATAACAGA
1 GATAGCCACAAAGGCTTCCTTTTAACAGT
* * * * *
8772464 GATCGCCATAAAGACATT-CTTTTAATAGA
1 GATAGCCACAAAGGC-TTCCTTTTAACAGT
* * * * *
8772493 GATCGCCACAAGGGCTTCCTTATAATAGA
1 GATAGCCACAAAGGCTTCCTTTTAACAGT
*
8772522 GGTCA-CCACAAAGGCTTC
1 GAT-AGCCACAAAGGCTTC
8772540 ATTTCAAAGG
Statistics
Matches: 138, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
28 3 0.02
29 130 0.94
30 5 0.04
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (29 bp):
GATAGCCACAAAGGCTTCCTTTTAACAGT
Found at i:8772484 original size:58 final size:57
Alignment explanation
Indices: 8772347--8772534 Score: 207
Period size: 58 Copynumber: 3.2 Consensus size: 57
8772337 TCCTTTCCGA
* * * *
8772347 AGATAGCCACAAAGCATTCCTTTTAACAGTGATAGCCACAAAGGCTTCCTTTTAACAG
1 AGATCGCCACAAAGCATT-CTTTTAACAGAGATCGCCACAAAGGCTTCCTTATAACAG
* * * *
8772405 AGATC-CTCCCAAAGGCTTTCTTATAACAGAGATCGCCATAAAGGCTTCCTTATAACAG
1 AGATCGC-CACAAA-GCATTCTTTTAACAGAGATCGCCACAAAGGCTTCCTTATAACAG
* * * *
8772463 AGATCGCCATAAAGACATTCTTTTAATAGAGATCGCCACAAGGGCTTCCTTATAATAG
1 AGATCGCCACAAAG-CATTCTTTTAACAGAGATCGCCACAAAGGCTTCCTTATAACAG
* *
8772521 AGGTCACCACAAAG
1 AGATCGCCACAAAG
8772535 GCTTCATTTC
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
57 2 0.02
58 100 0.93
59 5 0.05
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (57 bp):
AGATCGCCACAAAGCATTCTTTTAACAGAGATCGCCACAAAGGCTTCCTTATAACAG
Found at i:8772515 original size:87 final size:87
Alignment explanation
Indices: 8772353--8772539 Score: 209
Period size: 87 Copynumber: 2.1 Consensus size: 87
8772343 CCGAAGATAG
* * * *
8772353 CCACAAA-GCATTCCTTTTAACAGTGATAGCCACAAAGGCTTCCTTTTAACAGAGATCCTCCCAA
1 CCACAAAGGC-TTCCTTATAACAGAGATAGCCACAAAGACTTCCTTTTAACAGAGATCCTCACAA
* *
8772417 AGGCTTTCTTATAACAGAGATCG
65 AGGCTTCCTTATAACAGAGATCA
* * * *
8772440 CCATAAAGGCTTCCTTATAACAGAGATCGCCATAAAGACATT-CTTTTAATAGAGATCGC-CACA
1 CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGAC-TTCCTTTTAACAGAGATC-CTCACA
* * *
8772503 AGGGCTTCCTTATAATAGAGGTCA
64 AAGGCTTCCTTATAACAGAGATCA
8772527 CCACAAAGGCTTC
1 CCACAAAGGCTTC
8772540 ATTTCAAAGG
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
87 78 0.94
88 5 0.06
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (87 bp):
CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGACTTCCTTTTAACAGAGATCCTCACAAA
GGCTTCCTTATAACAGAGATCA
Found at i:8773398 original size:48 final size:47
Alignment explanation
Indices: 8773326--8773420 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 47
8773316 GTTCTGGATG
* *
8773326 CTGAACCAAGACACTAACCCCTTTTCAACCTGCGCACGGAAACAACC
1 CTGAACCAAGACACTAACCCCTTTTCAACCTACGCACAGAAACAACC
* * * *
8773373 NCTGAACCGAGACTCTGATCCCTTTTCAACCTACGCACAGAAACAACC
1 -CTGAACCAAGACACTAACCCCTTTTCAACCTACGCACAGAAACAACC
8773421 TTACGCTGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.33, C:0.37, G:0.13, T:0.17
Consensus pattern (47 bp):
CTGAACCAAGACACTAACCCCTTTTCAACCTACGCACAGAAACAACC
Found at i:8773862 original size:21 final size:21
Alignment explanation
Indices: 8773804--8773890 Score: 95
Period size: 21 Copynumber: 4.1 Consensus size: 21
8773794 CTTGATCAGT
*
8773804 ATACGATACAT-AAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* ** *
8773824 AAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
*
8773845 ATACGACACATAAAGTGCATGAG
1 ATACGACACATAAAGTGCCT--G
8773868 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
8773889 AT
1 AT
8773891 CGGCAGAGCC
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
20 8 0.15
21 26 0.48
23 20 0.37
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:8773886 original size:44 final size:41
Alignment explanation
Indices: 8773804--8773890 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
8773794 CTTGATCAGT
* * * *
8773804 ATACGATACATAAGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACATAAGTGCATGAAACGACACACAAAGTGCCTG
*
8773845 ATACGACACATAAAGTGCATGAGATACGACACATAAAGTGCCTG
1 ATACGACACAT-AAGTGCATGA-A-ACGACACACAAAGTGCCTG
8773889 AT
1 AT
8773891 CGGCAGAGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 10 0.26
42 9 0.24
43 1 0.03
44 18 0.47
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (41 bp):
ATACGACACATAAGTGCATGAAACGACACACAAAGTGCCTG
Found at i:8775082 original size:25 final size:25
Alignment explanation
Indices: 8775039--8775091 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
8775029 TATTATCTTA
8775039 ATTTTAATTAATATAA-TTTATAAT
1 ATTTTAATTAATATAATTTTATAAT
8775063 ATTTTAATTTAATA-ACATTTTTATAAT
1 ATTTTAA-TTAATATA-A-TTTTATAAT
8775090 AT
1 AT
8775092 AAATCAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 8 0.32
25 7 0.28
27 10 0.40
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
ATTTTAATTAATATAATTTTATAAT
Found at i:8785554 original size:113 final size:113
Alignment explanation
Indices: 8785356--8785566 Score: 404
Period size: 113 Copynumber: 1.9 Consensus size: 113
8785346 ATTTTATTAA
8785356 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
8785421 ATGCGTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
66 ATGCGTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
*
8785469 TCAAATGAGTCCTTCAATTTGAAGTGCCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
*
8785534 ATGCTTAAGTTGTTCAACTACCTTTATTAATAC
66 ATGCGTAAGTTGTTCAACTACCTTTATTAATAC
8785567 AATGAATCTT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 96 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.37
Consensus pattern (113 bp):
TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
ATGCGTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
Found at i:8785813 original size:18 final size:18
Alignment explanation
Indices: 8785786--8785820 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8785776 GAAATGGTAT
8785786 TTGTTATTGTTATTATTA
1 TTGTTATTGTTATTATTA
* *
8785804 TTGTTGTTGTTGTTATT
1 TTGTTATTGTTATTATT
8785821 TTGCGTTGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (18 bp):
TTGTTATTGTTATTATTA
Found at i:8791836 original size:17 final size:18
Alignment explanation
Indices: 8791811--8791844 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8791801 TTTTTATTAA
8791811 TTTATATTTTTAAATATT
1 TTTATATTTTTAAATATT
*
8791829 TTTA-ATTTTTTAATAT
1 TTTATATTTTTAAATAT
8791845 ATGTTTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATATTTTTAAATATT
Found at i:8795332 original size:10 final size:10
Alignment explanation
Indices: 8795310--8795342 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
8795300 TGCATGTATT
8795310 CAAA-ACTAC
1 CAAAGACTAC
*
8795319 CAAAGACTAT
1 CAAAGACTAC
8795329 CAAAGACTAC
1 CAAAGACTAC
8795339 CAAA
1 CAAA
8795343 CTTCTTTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.19
10 17 0.81
ACGTcount: A:0.55, C:0.27, G:0.06, T:0.12
Consensus pattern (10 bp):
CAAAGACTAC
Found at i:8800438 original size:5 final size:5
Alignment explanation
Indices: 8800430--8800462 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
8800420 AGCTGGGCTG
*
8800430 AGCTA AGCTA AGCTA AGCTA AGCAA AGC-A AGCT
1 AGCTA AGCTA AGCTA AGCTA AGCTA AGCTA AGCT
8800463 TCTGAATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.15
Consensus pattern (5 bp):
AGCTA
Found at i:8802750 original size:2 final size:2
Alignment explanation
Indices: 8802745--8802771 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8802735 GAAAAAAAGG
8802745 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
8802772 CCCTCAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8807078 original size:44 final size:44
Alignment explanation
Indices: 8807023--8808330 Score: 1234
Period size: 44 Copynumber: 29.7 Consensus size: 44
8807013 TCAGTCTGCC
**
8807023 TCACTACCAATATAAAAAGACAGGATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * ** *
8807068 TCACGCCAATACATGAAGATAATATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * * *
8807112 TCACGCCAATACATGAAGATAAGACCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
8807156 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTTGATCCACT
1 TC-ACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
*
8807200 TC-CTACCAATATAGGAAGACAGAATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
8807244 TCACGCCAATACATGAAGAC-GAGATCTGCTTTCTTCGATCCACT
1 TCACACCAATATAGGAAGACAG-GATCTGCTATCTTCGATCTACT
* * *
8807288 TC-CTACCAATATAGGAAGATATGATCTGCTATCTTCGATCCACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
*
8807332 TC-CTACCAATATAGGAAGACAGAATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
8807376 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * *
8807420 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TC-ACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
*
8807464 TC-CTACCAATATAGGAAGACAGAATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
8807508 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
8807552 TCACCACCAATATGGGAAGGCAAGATCTAC-ATCTTCGATCCACTT
1 TCA-CACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTAC-T
*
8807597 TC-TACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * **
8807640 TCACGCCGATACATTAAAGACAGGATCTGCTATCTTCGATCTACT
1 TCACACCAATATA-GGAAGACAGGATCTGCTATCTTCGATCTACT
* * * ** * *
8807685 TCACGCCGATACATAAAGATAGGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * *
8807729 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TC-ACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* *
8807773 TC-CTACCAATATAGGAAGATAGGATCTGTTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * *
8807817 TCACGCCAATACATGAAGAC-GAGATCTGCTTTCTTTGATCCACT
1 TCACACCAATATAGGAAGACAG-GATCTGCTATCTTCGATCTACT
* *
8807861 TC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCAATCCACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
8807905 TC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * ** * *
8807949 TCACGCCAATACATGAAGACAATATATGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * *
8807993 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TC-ACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * *
8808037 TC-CTACTAATATAGGAAAACAGAATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
8808081 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * *
8808125 TCACCACCAATATGGGAAGGCAAGATTTAC-ATCTTCGATCCACT
1 TCA-CACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
*
8808169 TC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATTTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * *
8808213 TCACGCCGATACATGAAGACAGGATCTGCTTTCTTCTATCTACTT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTAC-T
* ** *
8808258 TGC-CACCAATATGGGAAGACAATATCTGC-ATCTTCGATCCACT
1 T-CACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
**
8808301 TCTTACCAATATAGGAAGACAGGATCTGCT
1 TCACACCAATATAGGAAGACAGGATCTGCT
8808331 TTTTTTGTGA
Statistics
Matches: 1041, Mismatches: 185, Indels: 75
0.80 0.14 0.06
Matches are distributed among these distances:
42 6 0.01
43 157 0.15
44 680 0.65
45 197 0.19
46 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (44 bp):
TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
Found at i:8807496 original size:264 final size:262
Alignment explanation
Indices: 8807023--8808332 Score: 1408
Period size: 264 Copynumber: 5.0 Consensus size: 262
8807013 TCAGTCTGCC
** * * * * *
8807023 TCACTACCAATATAAAAAGACAGGATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGA
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTTC-CTACCAATATAGGAAGA
* * * * * *
8807087 TA-ATATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGATAAGACCTGCTTTCTTCGAT
64 CAGA-ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAGGATCTGCTATCTTCGAT
* * *** * * * * *
8807151 CTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTTGATCCACTTCCTACCAATATAGG
128 CTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATGGG
* * *
8807215 AAGAC-AGAATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACGAGATCTGCTTTCT
192 AAGACAAG-ATCTGC-ATCTTCGATCCACTTC-CTACCAATACAGGAAGAC-AGATCTGCTTTCT
*
8807278 TCGATCCACT
253 TCGATCTACT
* *
8807288 TC-CTACCAATATAGGAAGATATGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGAC
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGAC
* *
8807352 AGAATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
65 AGAATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAGGATCTGCTATCTTCGATCT
* * *** * * * *
8807417 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAA
130 ACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATGGGAA
* * *
8807481 GAC-AGAATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTC
194 GACAAG-ATCTGC-ATCTTCGATCCACTTC-CTACCAATACAGGAAGAC-AGATCTGCTTTCTTC
8807544 GATCTACT
255 GATCTACT
* * * *
8807552 TCACCACCAATATGGGAAGGCAAGATCTAC-ATCTTCGATCCACTTTCTACCAATATAGGAAGAC
1 TCA-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGAC
* * *
8807616 AGGATCTGCTATCTTCGATCTACTTCACGCCGATACATTAAAGACAGGATCTGCTATCTTCGATC
65 AGAATCTGCTATCTTCGATCTACTTCACGCCAATACA-TGAAGACAGGATCTGCTATCTTCGATC
* * * *
8807681 TACTTCACGCCGATACATAAAGATAGGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGA
129 TACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-CCACCAATATGGGA
* *
8807746 AGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG-TTATCTTCG
193 AGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACA-GATCTGCTT-TCTTCG
8807810 ATCTACT
256 ATCTACT
* * * * * *
8807817 TCACGCCAATACATGAAGACGAGATCTGCTTTCTTTGATCCACTTCCTACCAATATAGGAAGACA
1 TCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGACA
* * * * * *
8807882 GGATCTGCTATCTTCAATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCT
66 GAATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAGGATCTGCTATCTTCGATCT
* *
8807946 ACTTCACGCCAATACATGAAGACAATATATGCTTTCTTCGATCTACTTCGCCACCAATATGGGAA
130 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-CCACCAATATGGGAA
* * * *
8808011 GACAAGATCTGCATCTTCGATCCACTTCCTACTAATATAGGAAAACAGAATCTGCTATCTTCGAT
194 GACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACAG-ATCTGCTTTCTTCGAT
8808076 CTACT
258 CTACT
* * * * * * * *
8808081 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGGC
1 TCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTTC-CTACCAATATAGGAAGAC
* * * * * *
8808146 A-AGATTTAC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGAT
65 AGA-ATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAGGATCTGCTATCTTCGAT
* * * * *
8808208 TTACTTCACGCCGATACATGAAGACAGGATCTGCTTTCTTCTATCTACTTTGCCACCAATATGGG
128 CTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC-TTCCCACCAATATGGG
* * *
8808273 AAGACAATATCTGCATCTTCGATCCACTTCTTACCAATATAGGAAGACAGGATCTGCTTT
192 AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACA-GATCTGCTTT
8808333 TTTTGTGAGA
Statistics
Matches: 933, Mismatches: 93, Indels: 39
0.88 0.09 0.04
Matches are distributed among these distances:
263 2 0.00
264 705 0.76
265 201 0.22
266 23 0.02
267 2 0.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (262 bp):
TCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGACA
GAATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAGGATCTGCTATCTTCGATCTA
CTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATGGGAAGA
CAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACAGATCTGCTTTCTTCGATCTA
CT
Found at i:8834791 original size:8 final size:8
Alignment explanation
Indices: 8834744--8834771 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8834734 AAGAAGAAGC
8834744 AAAAAACA
1 AAAAAACA
8834752 AAAAAACA
1 AAAAAACA
8834760 AAAAAACA
1 AAAAAACA
8834768 AAAA
1 AAAA
8834772 GAGAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAACA
Found at i:8835190 original size:16 final size:16
Alignment explanation
Indices: 8835169--8835236 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
8835159 TTTGGTTCGC
*
8835169 TGTATTGGATTAGAGT
1 TGTATTGGATTAGAGG
8835185 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
8835201 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
8835217 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
8835233 TGTA
1 TGTA
8835237 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:8835492 original size:18 final size:17
Alignment explanation
Indices: 8835471--8835505 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8835461 TTATTATTAA
*
8835471 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8835489 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8835506 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8835644 original size:157 final size:157
Alignment explanation
Indices: 8835358--8835674 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 157
8835348 TAGAATACCC
*
8835358 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
8835423 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
8835488 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
8835515 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAATTTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
8835580 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
8835645 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
8835672 TTA
1 TTA
8835675 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:8835645 original size:16 final size:16
Alignment explanation
Indices: 8835608--8835649 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8835598 TTAATCATAT
*
8835608 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
8835624 TT-AAATATATTATAA
1 TTAAAATATATTATAA
8835639 TTAAAATATAT
1 TTAAAATATAT
8835650 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:8835656 original size:14 final size:15
Alignment explanation
Indices: 8835617--8835658 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8835607 TTTAAACATA
*
8835617 ATTATTATTAAATAT
1 ATTATAATTAAATAT
8835632 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
8835646 A-TATAATTTAATA
1 ATTATAATTAAATA
8835659 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:8835870 original size:24 final size:25
Alignment explanation
Indices: 8835824--8835871 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
8835814 TATGAATTTG
8835824 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
8835850 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
8835872 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:8835875 original size:92 final size:92
Alignment explanation
Indices: 8835779--8836007 Score: 236
Period size: 92 Copynumber: 2.5 Consensus size: 92
8835769 TGATTTAATA
* * *
8835779 AAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTA
*
8835841 ATTATTACATATAATTTAATAATTAATATT
64 A-TATTAAATATAATTTAATAATTAATATT
* * * * *
8835871 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
* *
8835936 ATTAAATATAATTTAAT-AGTGATA-T
66 ATTAAATATAATTTAATAATTAATATT
* * *
8835961 ATAATTTCATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 A-AATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
8836008 CTAAAATCAA
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
90 2 0.02
91 27 0.23
92 81 0.68
93 9 0.08
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (92 bp):
AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAATATT
Found at i:8838392 original size:33 final size:33
Alignment explanation
Indices: 8838353--8838429 Score: 154
Period size: 33 Copynumber: 2.3 Consensus size: 33
8838343 ATTATAAAGC
8838353 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
8838386 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
8838419 ATGTATAATTG
1 ATGTATAATTG
8838430 TTGGTGTATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:8838429 original size:18 final size:18
Alignment explanation
Indices: 8838406--8838447 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
8838396 GACCTAAAAT
8838406 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
8838424 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
8838442 TAATTG
1 TAATTG
8838448 ACCTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (18 bp):
TAATTGTTGGTGTATGTA
Found at i:8838432 original size:51 final size:51
Alignment explanation
Indices: 8838373--8838476 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
8838363 GACCTAAAAT
*
8838373 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
8838424 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
1 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
8838475 TA
1 TA
8838477 TTTCAAGTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (51 bp):
TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
Found at i:8840614 original size:36 final size:37
Alignment explanation
Indices: 8840521--8840652 Score: 160
Period size: 36 Copynumber: 3.6 Consensus size: 37
8840511 GTAAATCGGC
* *
8840521 AGAAAC-TGTGAGCAAATCGGCCGAAAAAGAAAAGAAA
1 AGAAACATGGGAGCAAATCGG-CAAAAAAGAAAAGAAA
*
8840558 AGAAACGAGGGGAGCAAATCGGCAAAAAAGAAAAGAAA
1 AGAAAC-ATGGGAGCAAATCGGCAAAAAAGAAAAGAAA
* * *
8840596 ATAAAC-TGGGAGCAAATCGGCAGAAAAGAAAAGCAA
1 AGAAACATGGGAGCAAATCGGCAAAAAAGAAAAGAAA
* *
8840632 AGAAACAAGGAAGCAAATCGG
1 AGAAACATGGGAGCAAATCGG
8840653 ATGAAGGTAG
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
36 32 0.39
37 18 0.22
38 20 0.24
39 12 0.15
ACGTcount: A:0.55, C:0.13, G:0.27, T:0.06
Consensus pattern (37 bp):
AGAAACATGGGAGCAAATCGGCAAAAAAGAAAAGAAA
Found at i:8840985 original size:5 final size:5
Alignment explanation
Indices: 8840973--8841007 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
8840963 TTCACTTGAA
* *
8840973 AAAAG AAATG AAAAG AAAAA AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
8841008 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:8842307 original size:50 final size:50
Alignment explanation
Indices: 8842253--8842648 Score: 198
Period size: 50 Copynumber: 7.9 Consensus size: 50
8842243 TTACTCATAC
*
8842253 CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTT
1 CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * *
8842303 CCCTG-GCGATGCAGTGAAACAGATTGAAGCTACAACGGCAAATCTT-GTT
1 CCCTGAG-GTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* ** * *
8842352 CCCCGACATTGCAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTT
1 CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC-TT
* * * ** * * * * *
8842403 CCCTG-GCGGTGCAGTGGAGTAA-ATTAAAGCTACGACGGTGAATCTTGCTT
1 CCCTGAG-GTTGCAAT-TAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* ** * * *
8842453 CCCCGAAATTGCAATTTAAAATATTGAAGCCGCAACGGCGAATCTTACTT
1 CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * ** ** * ** * *
8842503 CTCT--GGTAGTACAGTGGAGCAGATTAAAGATACGACGGCGAATCTTGCTT
1 CCCTGAGGT--TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** * *
8842553 -CCTCGATATTGCAATTTAAAAGATTGAAGCCATAACGGCGAATCTTACTT
1 CCCT-GAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* ** * *
8842603 CCCTG-GCAG-TGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT
1 CCCTGAG--GTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTT
8842649 GTTCCCCGAT
Statistics
Matches: 242, Mismatches: 88, Indels: 32
0.67 0.24 0.09
Matches are distributed among these distances:
48 1 0.00
49 41 0.17
50 161 0.67
51 36 0.15
52 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (50 bp):
CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
Found at i:8842564 original size:100 final size:99
Alignment explanation
Indices: 8842261--8842658 Score: 528
Period size: 100 Copynumber: 4.0 Consensus size: 99
8842251 ACCCCTGAGG
* * *
8842261 TTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGC-GATGCAGTGAAACAG
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAG-TGCAGTGGAACAG
* * *
8842325 ATTGAAGCTACAACGGCAAATCTTGTTCCCCGACA
65 ATTAAAGCTACAACGGCGAATCTTGTTCCCCGATA
* * ** *
8842360 TTGCAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCCTGGCGGTGCAGTGGAGTAA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTAC-TTCCCTGGCAGTGCAGTGGAACAG
* * *
8842425 ATTAAAGCTACGACGGTGAATCTTGCTTCCCCGAAA
65 ATTAAAGCTACAACGGCGAATCTTG-TTCCCCGATA
* * * * * *
8842461 TTGCAATTTAAAATATTGAAGCCGCAACGGCGAATCTTACTTCTCTGGTAGTACAGTGGAGCAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
* * *
8842526 TTAAAGATACGACGGCGAATCTTGCTTCCTCGATA
66 TTAAAGCTACAACGGCGAATCTTG-TTCCCCGATA
*
8842561 TTGCAATTTAAAAGATTGAAGCCATAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
*
8842626 TTGAAGCTACAACGGCGAATCTTGTTCCCCGAT
66 TTAAAGCTACAACGGCGAATCTTGTTCCCCGAT
8842659 GTAATACCCA
Statistics
Matches: 260, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
99 45 0.17
100 168 0.65
101 47 0.18
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (99 bp):
TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
TTAAAGCTACAACGGCGAATCTTGTTCCCCGATA
Found at i:8846818 original size:22 final size:23
Alignment explanation
Indices: 8846793--8846898 Score: 101
Period size: 22 Copynumber: 4.7 Consensus size: 23
8846783 GCAATTTAAA
*
8846793 GCTG-CCAAATTTGATATATGAT
1 GCTGTCCAATTTTGATATATGAT
* * *
8846815 GCTGTCC-ATTTTAATGTATAAT
1 GCTGTCCAATTTTGATATATGAT
8846837 GCTGTCCAATTTTGAGTATATTGAT
1 GCTGTCCAATTTTGA-TATA-TGAT
* * *
8846862 GCTGTCC-ATTTTAATGTATAAT
1 GCTGTCCAATTTTGATATATGAT
*
8846884 GCTGTCAAATTTTGA
1 GCTGTCCAATTTTGA
8846899 GCATATTATT
Statistics
Matches: 67, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
22 31 0.46
23 17 0.25
24 9 0.13
25 10 0.15
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.42
Consensus pattern (23 bp):
GCTGTCCAATTTTGATATATGAT
Found at i:8846866 original size:25 final size:23
Alignment explanation
Indices: 8846793--8846920 Score: 97
Period size: 22 Copynumber: 5.5 Consensus size: 23
8846783 GCAATTTAAA
*
8846793 GCTG-CCAAATTTGA-TATATGAT
1 GCTGTCCAATTTTGAGTATAT-AT
*
8846815 GCTGTCC-ATTTTAATGTATA-AT
1 GCTGTCCAATTTTGA-GTATATAT
8846837 GCTGTCCAATTTTGAGTATATTGAT
1 GCTGTCCAATTTTGAGTATA-T-AT
*
8846862 GCTGTCC-ATTTTAATGTATA-AT
1 GCTGTCCAATTTTGA-GTATATAT
* *
8846884 GCTGTCAAATTTTGAGCATATTATT
1 GCTGTCCAATTTTGAGTATA-TA-T
*
8846909 ACTGTCCAATTT
1 GCTGTCCAATTT
8846921 GATGAATAAT
Statistics
Matches: 85, Mismatches: 9, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
22 35 0.41
23 14 0.16
24 11 0.13
25 25 0.29
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (23 bp):
GCTGTCCAATTTTGAGTATATAT
Found at i:8846866 original size:47 final size:47
Alignment explanation
Indices: 8846793--8846940 Score: 187
Period size: 47 Copynumber: 3.2 Consensus size: 47
8846783 GCAATTTAAA
*
8846793 GCTG-CCAAATTTGA-TATA-TGATGCTGTCCATTTTAATGTATAAT
1 GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
8846837 GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
1 GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
* * * * * *
8846884 GCTGTCAAATTTTGAGCATATT-ATTACTGTCCAATTTGATGAATAATT
1 GCTGTCCAATTTTGAGTATATTGA-TGCTGTCCATTTTAATGTATAA-T
8846932 GCTGTCCAA
1 GCTGTCCAA
8846941 AACAGGGTTG
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
44 4 0.04
45 9 0.10
46 5 0.05
47 64 0.70
48 9 0.10
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.41
Consensus pattern (47 bp):
GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
Found at i:8847804 original size:128 final size:128
Alignment explanation
Indices: 8847576--8847829 Score: 411
Period size: 128 Copynumber: 2.0 Consensus size: 128
8847566 GCTATACATT
* * *
8847576 ACAGATCTTATCTCTCTAAAGTTGCTGTAGAGTAGATCACATCCAGTCTTATCTCCCTAAGTAGT
1 ACAGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCACATCAAGTCTTATCTCCCTAAGCAGT
8847641 AGTGGAGCAGACAAAAGAAACAAATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAACC
66 AGTGGAGCAGACAAAAGAAACAAATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAACC
* * *
8847704 ACAGATCTTATCTCTTTGAAGTTGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGT
1 ACAGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCACATCAAGTCTTATCTCCCTAAGCAGT
* * *
8847769 AGTGGAGCAGACAAAAGAAA-AGAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
66 AGTGGAGCAGACAAAAGAAACA-AATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAA
8847830 TAATGAATCG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
127 1 0.01
128 115 0.99
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (128 bp):
ACAGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCACATCAAGTCTTATCTCCCTAAGCAGT
AGTGGAGCAGACAAAAGAAACAAATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAACC
Found at i:8847970 original size:44 final size:44
Alignment explanation
Indices: 8847889--8847974 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
8847879 TATATCAAAC
* * * *
8847889 CTTATCTCCCTGAAGTTGCAGTTGAGCAAGTTGAAGATACAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAAGCTAAAGATACAAGT
8847933 CTTATCTCCCTGAAGTTACAGTGGAG-AAGACTAAAGATACAA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAAG-CTAAAGATACAA
8847975 ATCTCATCCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAAGCTAAAGATACAAGT
Found at i:8850976 original size:20 final size:21
Alignment explanation
Indices: 8850944--8850984 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
8850934 ATTTACCGTT
8850944 CAACCCTTTTCATGTAAGCAC
1 CAACCCTTTTCATGTAAGCAC
8850965 CAACCC-TTTCATGTAAGCAC
1 CAACCCTTTTCATGTAAGCAC
8850985 TAACTGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.27
Consensus pattern (21 bp):
CAACCCTTTTCATGTAAGCAC
Found at i:8851425 original size:9 final size:9
Alignment explanation
Indices: 8851411--8851435 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8851401 GTGCATTGGA
8851411 AAATAAAAG
1 AAATAAAAG
8851420 AAATAAAAG
1 AAATAAAAG
8851429 AAATAAA
1 AAATAAA
8851436 TAATTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (9 bp):
AAATAAAAG
Found at i:8853096 original size:42 final size:42
Alignment explanation
Indices: 8852942--8853082 Score: 147
Period size: 43 Copynumber: 3.3 Consensus size: 42
8852932 GACCATGACT
* * * * *
8852942 TTTAGCGGCGCTTTTGCTACAAACGCCGCTATAGATCAGGATC
1 TTTAGCGACGCTTTTACCACAAACGCCGCTATAGATCA-AACC
* * * * *
8852985 TTAAGCGGCGCTTTTCCCACAAACGCCGCTATAGCTGAAGACC
1 TTTAGCGACGCTTTTACCACAAACGCCGCTATAGATCAA-ACC
* * *
8853028 TTTAGTGACGTTTTTACCACAAACGCCGCTATAGAACAAACC
1 TTTAGCGACGCTTTTACCACAAACGCCGCTATAGATCAAACC
8853070 TTTAGCGACGCTT
1 TTTAGCGACGCTT
8853083 CTTGCAAAAA
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 14 0.17
43 66 0.82
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (42 bp):
TTTAGCGACGCTTTTACCACAAACGCCGCTATAGATCAAACC
Found at i:8857344 original size:17 final size:18
Alignment explanation
Indices: 8857311--8857344 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8857301 TATTTCTTAA
8857311 ATAATTTAAACTATATTC
1 ATAATTTAAACTATATTC
*
8857329 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
8857345 TAATTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTC
Found at i:8858051 original size:15 final size:15
Alignment explanation
Indices: 8858031--8858069 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
8858021 ACTCGACCAC
8858031 AAATCTCTAAACCCT
1 AAATCTCTAAACCCT
*
8858046 AAATCTCT-AACTCT
1 AAATCTCTAAACCCT
*
8858060 AAACCTCTAA
1 AAATCTCTAA
8858070 TCTCAAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATCTCTAAACCCT
Found at i:8858059 original size:21 final size:21
Alignment explanation
Indices: 8858030--8858089 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
8858020 AACTCGACCA
8858030 CAAATCTCTAAACCCTAAATCT
1 CAAA-CTCTAAACCCTAAATCT
*
8858052 CTAACTCTAAACCTCT-AATCT
1 CAAACTCTAAACC-CTAAATCT
8858073 CAAACTC-ATAACCCTAA
1 CAAACTCTA-AACCCTAA
8858090 TTACCGCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
20 3 0.09
21 25 0.76
22 5 0.15
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (21 bp):
CAAACTCTAAACCCTAAATCT
Found at i:8858226 original size:29 final size:30
Alignment explanation
Indices: 8858193--8858255 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
8858183 AACCCGACCA
*
8858193 TTAACCCTTAAATCC-T-AAACCCTGAACCC
1 TTAACCCTTAAA-CCTTAAAACCCTAAACCC
8858222 TTAA-CCTTAAACCTTAAAACCCTAAACCC
1 TTAACCCTTAAACCTTAAAACCCTAAACCC
*
8858251 ATAAC
1 TTAAC
8858256 GCATAACCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 2 0.07
28 8 0.28
29 19 0.66
ACGTcount: A:0.40, C:0.35, G:0.02, T:0.24
Consensus pattern (30 bp):
TTAACCCTTAAACCTTAAAACCCTAAACCC
Found at i:8858250 original size:7 final size:7
Alignment explanation
Indices: 8858195--8858299 Score: 52
Period size: 7 Copynumber: 14.6 Consensus size: 7
8858185 CCCGACCATT
8858195 AACCCTTA
1 AACCC-TA
*
8858203 AATCCTA
1 AACCCTA
*
8858210 AACCCTG
1 AACCCTA
*
8858217 AACCCTT
1 AACCCTA
*
8858224 AACCTTA
1 AACCCTA
*
8858231 AACCTTAA
1 AACCCT-A
8858239 AACCCTA
1 AACCCTA
8858246 AACCC-A
1 AACCCTA
*
8858252 TAACGCATA
1 -AAC-CCTA
* *
8858261 ACCCCCA
1 AACCCTA
*
8858268 ACCCCT-
1 AACCCTA
8858274 AACCTCTA
1 AACC-CTA
*
8858282 ACCCCTA
1 AACCCTA
*
8858289 ACCCCTA
1 AACCCTA
8858296 AACC
1 AACC
8858300 TTATTTAATA
Statistics
Matches: 76, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
6 4 0.05
7 55 0.72
8 16 0.21
9 1 0.01
ACGTcount: A:0.37, C:0.43, G:0.02, T:0.18
Consensus pattern (7 bp):
AACCCTA
Found at i:8858263 original size:36 final size:35
Alignment explanation
Indices: 8858193--8858263 Score: 81
Period size: 36 Copynumber: 2.0 Consensus size: 35
8858183 AACCCGACCA
* * *
8858193 TTAACCCTTAAATCCTAAACCCTGAACCCTTAACC
1 TTAAACCTTAAACCCTAAACCCTGAACCCATAACC
*
8858228 TTAAACCTTAAAACCCTAAACCCAT-AACGCATAACC
1 TTAAACCTT-AAACCCTAAACCC-TGAACCCATAACC
8858264 CCCAACCCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
35 8 0.27
36 21 0.70
37 1 0.03
ACGTcount: A:0.39, C:0.35, G:0.03, T:0.23
Consensus pattern (35 bp):
TTAAACCTTAAACCCTAAACCCTGAACCCATAACC
Found at i:8858296 original size:14 final size:14
Alignment explanation
Indices: 8858259--8858296 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
8858249 CCATAACGCA
*
8858259 TAACCCCCAACCCC
1 TAACCCCTAACCCC
*
8858273 TAACCTCTAACCCC
1 TAACCCCTAACCCC
8858287 TAACCCCTAA
1 TAACCCCTAA
8858297 ACCTTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.32, C:0.53, G:0.00, T:0.16
Consensus pattern (14 bp):
TAACCCCTAACCCC
Found at i:8859007 original size:41 final size:41
Alignment explanation
Indices: 8858936--8859172 Score: 341
Period size: 41 Copynumber: 5.8 Consensus size: 41
8858926 TTTTATTATT
*
8858936 ATTAGCGGCGCTT-TTCAAAAACGCCGCTAAAGACCGAAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCGGAGC
*
8858976 ATTAGCGGCGCTTCTTCAAAAACGCCACTAAAGACCGGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCGGAGC
* *
8859017 ATTAGCGGCGCTTCTTCAAAAATGCCACTAAAGACCGGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCGGAGC
* * * *
8859058 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCGGAGC
* * **
8859099 ATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCCAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCGGAGC
* *
8859140 ATTAGCGGCGCTTTTTCTAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAG
8859173 GCCCCAAAAA
Statistics
Matches: 182, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 13 0.07
41 169 0.93
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCGGAGC
Found at i:8859426 original size:20 final size:22
Alignment explanation
Indices: 8859403--8859450 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
8859393 TCTTTTTCAA
*
8859403 ATTTTTTTT-AAGAAA-TAACT
1 ATTTTTTTTAAAAAAATTAACT
8859423 ATTTTTTTTAAAAAAATTAACT
1 ATTTTTTTTAAAAAAATTAACT
8859445 ATTTTT
1 ATTTTT
8859451 GGTATAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 9 0.36
21 5 0.20
22 11 0.44
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTTTTTTTAAAAAAATTAACT
Found at i:8865919 original size:16 final size:15
Alignment explanation
Indices: 8865898--8865927 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
8865888 TAGTTTATTT
8865898 AAACCCTAAAACCCTA
1 AAACCCT-AAACCCTA
8865914 AAACCCTAAACCCT
1 AAACCCTAAACCCT
8865928 TAACACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (15 bp):
AAACCCTAAACCCTA
Found at i:8865924 original size:7 final size:8
Alignment explanation
Indices: 8865898--8865927 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8865888 TAGTTTATTT
8865898 AAACCCTA
1 AAACCCTA
8865906 AAACCCTA
1 AAACCCTA
8865914 AAACCCT-
1 AAACCCTA
8865921 AAACCCT
1 AAACCCT
8865928 TAACACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (8 bp):
AAACCCTA
Found at i:8865973 original size:7 final size:7
Alignment explanation
Indices: 8865963--8866073 Score: 68
Period size: 7 Copynumber: 15.7 Consensus size: 7
8865953 CCCCCGCCTT
8865963 TAAACCA
1 TAAACCA
8865970 TAAACCA
1 TAAACCA
*
8865977 TAAATCA
1 TAAACCA
* *
8865984 TAACCCC
1 TAAACCA
8865991 TAAACCCA
1 TAAA-CCA
*
8865999 TAATCCA
1 TAAACCA
*
8866006 TAAACCT
1 TAAACCA
8866013 TAAA--A
1 TAAACCA
*
8866018 TAGTAACTCT
1 TA--AAC-CA
8866028 TAAACCA
1 TAAACCA
8866035 TAAACTC-
1 TAAAC-CA
8866042 TAAACCA
1 TAAACCA
* *
8866049 TATACCC
1 TAAACCA
8866056 TAAACCA
1 TAAACCA
*
8866063 -AAACCT
1 TAAACCA
8866069 TAAAC
1 TAAAC
8866074 TATAGTGATA
Statistics
Matches: 78, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
5 2 0.03
6 6 0.08
7 59 0.76
8 9 0.12
10 2 0.03
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:8866481 original size:41 final size:41
Alignment explanation
Indices: 8866413--8866669 Score: 258
Period size: 41 Copynumber: 6.3 Consensus size: 41
8866403 CGCTAAAATA
8866413 GAGCATTAGCGGCGC--TTCCTTAAAAACGCCGCTAAAGCCCT
1 GAGCATTAGCGGCGCTTTTCC--AAAAACGCCGCTAAAGCCCT
* * * *
8866454 GAGCATTAGCGGCACTTTTCCATAAACGTCGCTAAAGAGCCT
1 GAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCCT
*
8866496 -AGCATTAGCGGTGCTTTTCCAAAAACGCCGCTAAAGACCC-
1 GAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCCT
* ** * **
8866536 AAGCATTAATGGCGCTTCTT-AAAAAATACCGCTAAAGCCCT
1 GAGCATTAGCGGCGCTT-TTCCAAAAACGCCGCTAAAGCCCT
* *
8866577 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCT
1 GAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCT
* * *
8866618 G-GTCATTAGCGGCGTTTTTTCAAAAACGCCGCAAAAGCCCT
1 GAG-CATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCT
8866659 -ATGCATTAGCG
1 GA-GCATTAGCG
8866670 ACACTTTTTA
Statistics
Matches: 181, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
40 6 0.03
41 165 0.91
42 6 0.03
43 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCT
Found at i:8866642 original size:123 final size:122
Alignment explanation
Indices: 8866382--8866654 Score: 329
Period size: 123 Copynumber: 2.2 Consensus size: 122
8866372 AATATATTTT
* * * * *
8866382 GCGGCGTTTTTTAAAAAATGCCGCTAAA-ATAGAGCATTAGCGGCGCTTCCTTAAAAACGCCGCT
1 GCGGCGTTTTTTCAAAAACGCCGCTAAAGACAGAGCATTAACGGCGCTTCCTTAAAAACACCGCT
* * *
8866446 AAAGCCCTGAGCATTAGCGGCACTTTTCCATAAACGTCGCTAAAGAGCCTAGCATTA
66 AAAGCCCTGAGCATTAGCGGCACTTTTCCAAAAACGCCGCTAAAGACCCTAGCATTA
* * * * *
8866503 GCGGTGCTTTTCCAAAAACGCCGCTAAAGACCCA-AGCATTAATGGCGCTT-CTTAAAAAATACC
1 GCGGCGTTTTTTCAAAAACGCCGCTAAAGA--CAGAGCATTAACGGCGCTTCCTT-AAAAACACC
* * *
8866566 GCTAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-ACCCTGGTCATTA
63 GCTAAAGCCCTGAGCATTAGCGGCACTTTTCCAAAAACGCCGCTAAAGACCCTAG-CATTA
*
8866626 GCGGCGTTTTTTCAAAAACGCCGCAAAAG
1 GCGGCGTTTTTTCAAAAACGCCGCTAAAG
8866655 CCCTATGCAT
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
121 23 0.18
122 9 0.07
123 94 0.74
124 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (122 bp):
GCGGCGTTTTTTCAAAAACGCCGCTAAAGACAGAGCATTAACGGCGCTTCCTTAAAAACACCGCT
AAAGCCCTGAGCATTAGCGGCACTTTTCCAAAAACGCCGCTAAAGACCCTAGCATTA
Found at i:8866681 original size:123 final size:123
Alignment explanation
Indices: 8866441--8866684 Score: 312
Period size: 123 Copynumber: 2.0 Consensus size: 123
8866431 CTTAAAAACG
* * *
8866441 CCGCTAAAGCCCTGAGCATTAGCGGCACTTTTCCATAAACGTCGCTAAAGAGCCTAGCATTAGCG
1 CCGCTAAAGCCCTGAGCATTAGCGGCACTTTTCCAAAAACGCCGCTAAAGACCCTAGCATTAGCG
* * * * *
8866506 GTGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCATTAATGGCGCTTCTTAAAAAATA
66 GCGCTTTTCCAAAAACGCCGCAAAAGACCCAAGCATTAACGACACTTCTTAAAAAATA
* * *
8866564 CCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-ACCCTGGTCATTAGC
1 CCGCTAAAGCCCTGAGCATTAGCGGCACTTTTCCAAAAACGCCGCTAAAGACCCTAG-CATTAGC
* * * * *
8866628 GGCGTTTTTTCAAAAACGCCGCAAAAG-CCCTATGCATTAGCGACACTTTTTAAAAAA
65 GGCGCTTTTCCAAAAACGCCGCAAAAGACCC-AAGCATTAACGACACTTCTTAAAAAA
8866685 ACGCCACTGA
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
122 8 0.08
123 95 0.92
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (123 bp):
CCGCTAAAGCCCTGAGCATTAGCGGCACTTTTCCAAAAACGCCGCTAAAGACCCTAGCATTAGCG
GCGCTTTTCCAAAAACGCCGCAAAAGACCCAAGCATTAACGACACTTCTTAAAAAATA
Found at i:8866841 original size:41 final size:39
Alignment explanation
Indices: 8866747--8866869 Score: 115
Period size: 41 Copynumber: 3.1 Consensus size: 39
8866737 TTGCGGCGCA
* * *
8866747 TTTT-GGAAAATGCCGCTAATGCTCATTTTTAGCGGCGT
1 TTTTCGGAAAACGCCGCTAATACTCATTTTTAGCGGCAT
*
8866785 TTTTCGGAAAACGCCGCTAATACTCATTCTTTAGTGGCAAT
1 TTTTCGGAAAACGCCGCTAATACTCATT-TTTAGCGGC-AT
** * * *
8866826 TTTT-TTAAAAGCGCCGCTAATGATTGATTTTTAGCGGCGT
1 TTTTCGGAAAA-CGCCGCTAAT-ACTCATTTTTAGCGGCAT
8866866 TTTT
1 TTTT
8866870 TATCCAAATG
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.06
39 21 0.30
40 17 0.24
41 23 0.33
42 5 0.07
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (39 bp):
TTTTCGGAAAACGCCGCTAATACTCATTTTTAGCGGCAT
Found at i:8866870 original size:41 final size:40
Alignment explanation
Indices: 8866733--8866870 Score: 138
Period size: 39 Copynumber: 3.5 Consensus size: 40
8866723 TAGGCTTAGG
* ** *
8866733 TTTTTTGCGGCGCATTTTGGAAAATGCCGCTAATG-CTCA
1 TTTTTAGCGGCGTTTTTTGGAAAACGCCGCTAATGACTCA
*
8866772 TTTTTAGCGGCGTTTTTCGGAAAACGCCGCTAAT-ACTCA
1 TTTTTAGCGGCGTTTTTTGGAAAACGCCGCTAATGACTCA
* * * * *
8866811 TTCTTTAGTGGCAATTTTTT-TAAAAGCGCCGCTAATGATTGA
1 TT-TTTAGCGGC-GTTTTTTGGAAAA-CGCCGCTAATGACTCA
8866853 TTTTTAGCGGCGTTTTTT
1 TTTTTAGCGGCGTTTTTT
8866871 ATCCAAATGC
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
39 35 0.43
40 18 0.22
41 23 0.28
42 5 0.06
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTTGGAAAACGCCGCTAATGACTCA
Done.