Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 31 of 126
Found at i:8868259 original size:19 final size:19
Alignment explanation
Indices: 8868257--8868329 Score: 67
Period size: 19 Copynumber: 3.8 Consensus size: 19
8868247 TTTAAAATAT
*
8868257 TTTTAAAATATTTCTTTAA
1 TTTTAAAATATTTTTTTAA
**
8868276 TTTTAAAATATTTTTAAAA
1 TTTTAAAATATTTTTTTAA
***
8868295 TACTTT-TTTTATTTTTTTAA
1 T--TTTAAAATATTTTTTTAA
8868315 TTTTAAAATATTTTT
1 TTTTAAAATATTTTT
8868330 AAAATACTTT
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
18 3 0.08
19 24 0.60
20 10 0.25
21 3 0.08
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTAAAATATTTTTTTAA
Found at i:8868262 original size:11 final size:11
Alignment explanation
Indices: 8868246--8868362 Score: 60
Period size: 11 Copynumber: 11.4 Consensus size: 11
8868236 ATTTTTTTAA
8868246 TTTTAAAATAT
1 TTTTAAAATAT
8868257 TTTTAAAATAT
1 TTTTAAAATAT
*
8868268 TTCTT----TAA
1 TT-TTAAAATAT
8868276 TTTTAAAATAT
1 TTTTAAAATAT
8868287 TTTTAAAATACT
1 TTTTAAAATA-T
*
8868299 TTTT---TTAT
1 TTTTAAAATAT
* *
8868307 TTTT---TTAA
1 TTTTAAAATAT
8868315 TTTTAAAATAT
1 TTTTAAAATAT
8868326 TTTTAAAATACT
1 TTTTAAAATA-T
**
8868338 TTTT-TTA-AT
1 TTTTAAAATAT
8868347 TTTTAAAATAAT
1 TTTTAAAAT-AT
8868359 TTTT
1 TTTT
8868363 TGGTATTTAT
Statistics
Matches: 83, Mismatches: 10, Indels: 25
0.70 0.08 0.21
Matches are distributed among these distances:
7 2 0.02
8 16 0.19
9 7 0.08
10 2 0.02
11 38 0.46
12 18 0.22
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:8868269 original size:30 final size:30
Alignment explanation
Indices: 8868235--8868310 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
8868225 TAAACATATT
8868235 TATTTTTTTAATTTTAAAATATTTTTAAAA
1 TATTTTTTTAATTTTAAAATATTTTTAAAA
*
8868265 TATTTCTTTAATTTTAAAATATTTTTAAAA
1 TATTTTTTTAATTTTAAAATATTTTTAAAA
*
8868295 TACTTTTTTTATTTTT
1 TA-TTTTTTTAATTTT
8868311 TTAATTTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 31 0.74
31 11 0.26
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (30 bp):
TATTTTTTTAATTTTAAAATATTTTTAAAA
Found at i:8868279 original size:39 final size:39
Alignment explanation
Indices: 8868246--8868350 Score: 149
Period size: 39 Copynumber: 2.6 Consensus size: 39
8868236 ATTTTTTTAA
*
8868246 TTTTAAAATA-TTTTTAAAATATTTCTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTT-TAAT-TTT-TTTAATTTTAAAATAT
*
8868287 TTTTAAAATACTTTTTTTATTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTTAATTTTTTTAATTTTAAAATAT
8868326 TTTTAAAATACTTTTTTTAATTTTT
1 TTTTAAAATAC-TTTTTTAATTTTT
8868351 AAAATAATTT
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
39 27 0.46
40 15 0.25
41 12 0.20
42 5 0.08
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (39 bp):
TTTTAAAATACTTTTTTAATTTTTTTAATTTTAAAATAT
Found at i:8868350 original size:21 final size:21
Alignment explanation
Indices: 8868324--8868363 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8868314 ATTTTAAAAT
*
8868324 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATAATTTTTTTA
8868345 ATTTTTAAAATAATTTTTT
1 ATTTTTAAAATAATTTTTT
8868364 GGTATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTTTAAAATAATTTTTTTA
Found at i:8868358 original size:12 final size:12
Alignment explanation
Indices: 8868315--8868362 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
8868305 ATTTTTTTAA
8868315 TTTTAAAAT-AT
1 TTTTAAAATAAT
*
8868326 TTTTAAAATACT
1 TTTTAAAATAAT
*
8868338 TTTT---TTAAT
1 TTTTAAAATAAT
8868347 TTTTAAAATAAT
1 TTTTAAAATAAT
8868359 TTTT
1 TTTT
8868363 TGGTATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
9 7 0.24
11 9 0.31
12 13 0.45
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTAAAATAAT
Found at i:8871233 original size:20 final size:20
Alignment explanation
Indices: 8871190--8871232 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
8871180 TTACATTTTT
8871190 AAATTTTATTAATCTAGAAA
1 AAATTTTATTAATCTAGAAA
8871210 AAATGTTTATTAATCTAGAAA
1 AAAT-TTTATTAATCTAGAAA
8871231 AA
1 AA
8871233 TCAAGATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (20 bp):
AAATTTTATTAATCTAGAAA
Found at i:8872477 original size:11 final size:11
Alignment explanation
Indices: 8872463--8872503 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
8872453 TGTTTTCTCC
8872463 CTATTTTGCTA
1 CTATTTTGCTA
*
8872474 CTATTTTACTA
1 CTATTTTGCTA
* *
8872485 TTATGTTGCTA
1 CTATTTTGCTA
8872496 CTATTTTG
1 CTATTTTG
8872504 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:8872575 original size:30 final size:30
Alignment explanation
Indices: 8872541--8872598 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
8872531 CTTATTTTAT
*
8872541 TGTTAATCTTGTTATTGTTTTAAAGGCAAA
1 TGTTAATCTTGTTATTATTTTAAAGGCAAA
*
8872571 TGTTAATTTTGTTATTATTTTAAAGGCA
1 TGTTAATCTTGTTATTATTTTAAAGGCA
8872599 TTTGCTTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.50
Consensus pattern (30 bp):
TGTTAATCTTGTTATTATTTTAAAGGCAAA
Found at i:8872740 original size:11 final size:11
Alignment explanation
Indices: 8872724--8872754 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8872714 TATATACATT
8872724 TAAAAATTATA
1 TAAAAATTATA
*
8872735 TAAAAATAATA
1 TAAAAATTATA
8872746 TAAAAATTA
1 TAAAAATTA
8872755 ATACGGGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:8882961 original size:36 final size:35
Alignment explanation
Indices: 8882895--8882970 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 35
8882885 CATTATCATA
*
8882895 ATAACTTTATAATATAATATAATATAATATATATT
1 ATAACTTTATAATATAATATAAAATAATATATATT
8882930 ATAAGCTTTATAA-ATAATATAAAA-ACTATATATATT
1 ATAA-CTTTATAATATAATATAAAATA--ATATATATT
8882966 ATAAC
1 ATAAC
8882971 ATAATGCCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
34 1 0.03
35 15 0.41
36 21 0.57
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (35 bp):
ATAACTTTATAATATAATATAAAATAATATATATT
Found at i:8889400 original size:385 final size:385
Alignment explanation
Indices: 8888690--8889459 Score: 1531
Period size: 385 Copynumber: 2.0 Consensus size: 385
8888680 TAAATGATAC
8888690 GTGAATGAATTTTAAAGTCAATATTACAAAAATATATAAAATAATGTACATAAGTTAATTTAAAT
1 GTGAATGAATTTTAAAGTCAATATTACAAAAATATATAAAATAATGTACATAAGTTAATTTAAAT
8888755 AAATAATAGAACGAAAAACTTCATATAATAGTATATGTAGCAATATAAAAAGAGTTGAAATAAGC
66 AAATAATAGAACGAAAAACTTCATATAATAGTATATGTAGCAATATAAAAAGAGTTGAAATAAGC
8888820 AAAGTATATAATAGAGTACTTTAAGAGAAATCCATATTATATAAAATAGGTAAATATATATATAT
131 AAAGTATATAATAGAGTACTTTAAGAGAAATCCATATTATATAAAATAGGTAAATATATATATAT
8888885 AAAATAATATGAAATCAAATATAATGCGTATGTATATACTAAAAATAATTTAATATAAATTGTGT
196 AAAATAATATGAAATCAAATATAATGCGTATGTATATACTAAAAATAATTTAATATAAATTGTGT
8888950 ATAATTATATAAGAGCATTATTGTATATCTCCTTTTTTTAAAAAAAATATAGAAATATAATAATG
261 ATAATTATATAAGAGCATTATTGTATATCTCCTTTTTTTAAAAAAAATATAGAAATATAATAATG
8889015 AATTGTTAAATATATTATAAAATAAAAACATCAAGAGATATATACAAATCATGTCAAATT
326 AATTGTTAAATATATTATAAAATAAAAACATCAAGAGATATATACAAATCATGTCAAATT
8889075 GTGAATGAATTTTAAAGTCAATATTACAAAAATATATAAAATAATGTACATAAGTTAATTTAAAT
1 GTGAATGAATTTTAAAGTCAATATTACAAAAATATATAAAATAATGTACATAAGTTAATTTAAAT
8889140 AAATAATAGAACGAAAAACTTCATATAATAGTATATGTAGCAATATAAAAAGAGTTGAAATAAGC
66 AAATAATAGAACGAAAAACTTCATATAATAGTATATGTAGCAATATAAAAAGAGTTGAAATAAGC
8889205 AAAGTATATAATAGAGTACTTTAAGAGAAATCCATATTATATAAAATAGGTAAATATATATATAT
131 AAAGTATATAATAGAGTACTTTAAGAGAAATCCATATTATATAAAATAGGTAAATATATATATAT
*
8889270 ATAATAATATGAAATCAAATATAATGCGTATGTATATACTAAAAATAATTTAATATAAATTGTGT
196 AAAATAATATGAAATCAAATATAATGCGTATGTATATACTAAAAATAATTTAATATAAATTGTGT
8889335 ATAATTATATAAGAGCATTATTGTATATCTCCTTTTTTTAAAAAAAATATAGAAATATAATAATG
261 ATAATTATATAAGAGCATTATTGTATATCTCCTTTTTTTAAAAAAAATATAGAAATATAATAATG
8889400 AATTGTTAAATATATTATAAAATAAAAACATCAAGAGATATATACAAATCATGTCAAATT
326 AATTGTTAAATATATTATAAAATAAAAACATCAAGAGATATATACAAATCATGTCAAATT
8889460 TACATAAAAA
Statistics
Matches: 384, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
385 384 1.00
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.34
Consensus pattern (385 bp):
GTGAATGAATTTTAAAGTCAATATTACAAAAATATATAAAATAATGTACATAAGTTAATTTAAAT
AAATAATAGAACGAAAAACTTCATATAATAGTATATGTAGCAATATAAAAAGAGTTGAAATAAGC
AAAGTATATAATAGAGTACTTTAAGAGAAATCCATATTATATAAAATAGGTAAATATATATATAT
AAAATAATATGAAATCAAATATAATGCGTATGTATATACTAAAAATAATTTAATATAAATTGTGT
ATAATTATATAAGAGCATTATTGTATATCTCCTTTTTTTAAAAAAAATATAGAAATATAATAATG
AATTGTTAAATATATTATAAAATAAAAACATCAAGAGATATATACAAATCATGTCAAATT
Found at i:8891607 original size:44 final size:44
Alignment explanation
Indices: 8891329--8891614 Score: 169
Period size: 44 Copynumber: 6.6 Consensus size: 44
8891319 GATGCGATCT
* **
8891329 GCTCTACTGCAACTTCAAAGAGATAAGATCTATTACTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTTAATCC
* * * * * *
8891373 GCTCCACTACAACTTCTGGGAGATAGGAT-TATCGACTTCAATCTA
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTTAATC-C
* * * ** *
8891418 G-TCCACTGCAACCTCAGGGAGATAAGATTTGCTT-CTTTGGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTACTTTAATCC
* ** * * * *
8891461 GCCCCACTGTGACTTTAGGGGGATAAGA-CT-TGT-TTTCTCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTAT-TACTT-T-AATCC
* * * *
8891505 GCTCCACTGCAACTTTAGGGAGATAAGACCTGA-TGC---GATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTACTTTAATCC
* * *
8891546 ACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTTAATCC
*
8891590 GCTCCACTACAACTTCAGGGAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
8891615 GGATTATCGG
Statistics
Matches: 179, Mismatches: 47, Indels: 32
0.69 0.18 0.12
Matches are distributed among these distances:
40 1 0.01
41 32 0.18
42 3 0.02
43 6 0.03
44 131 0.73
45 5 0.03
46 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTTAATCC
Found at i:8891761 original size:128 final size:128
Alignment explanation
Indices: 8891605--8892217 Score: 913
Period size: 128 Copynumber: 4.8 Consensus size: 128
8891595 ACTACAACTT
* * * *
8891605 CAGGGAGATAGGA-TTATCGGCTTCAATATGCTCCCTTACACTTGAAGATAAGATTCGCCGTCTT
1 CAGGGACATAGGACTTGT-GGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTT
* *
8891669 CGATCTGCTACGCTACTGCTTAGGGAGACAAGGTCTGTAATTTCCAACCTACTCCACTGCTGAC
65 CGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGAC
* * *
8891733 TAGGGACATAGGACTTGTGGCTTAAATATTCTTCCTTACACTTGAAGATAAGATTCGCCATCTTC
1 CAGGGACATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* * * * *
8891798 GATCTACTCCGCTATTGCTTAGGGAGACAAGATTTTTAATTTTCAACCTACTCCACTGCTGAC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGAC
* * * *
8891861 CAAGGACATAGGACTTGTGGCTTAAATCTACTTCCTTACACTTGAAGATAAGATTCGTCGTCTTC
1 CAGGGACATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* * * *
8891926 GATCTACTCCGCTACTGCTTAGGGAGACAATATCTGTAATTTCCAACCTACTCCGCTACTGAC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGAC
*
8891989 CAGGGACATAGGACTTGTGGCTTAAATTTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGACATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
8892054 GATTTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAGTTTCCAACCTACTCCACTGCTGAC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGAC
* * * * **
8892117 TAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTACCGTCTTC
1 CAGGGACATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
8892182 GATCTGCTCCGCTACTACTTAGGGAGACAGGATCTG
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTG
8892218 CTATATTCAC
Statistics
Matches: 438, Mismatches: 46, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
128 435 0.99
129 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (128 bp):
CAGGGACATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTACTCCACTGCTGAC
Found at i:8893475 original size:7 final size:7
Alignment explanation
Indices: 8893461--8893498 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
8893451 AGCCTCTCCA
8893461 TCATTTT
1 TCATTTT
*
8893468 TTATTTT
1 TCATTTT
8893475 TCATTTT
1 TCATTTT
8893482 CTC-TTTT
1 -TCATTTT
8893489 TCATTTT
1 TCATTTT
8893496 TCA
1 TCA
8893499 CACATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 2 0.07
7 23 0.85
8 2 0.07
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (7 bp):
TCATTTT
Found at i:8894386 original size:32 final size:32
Alignment explanation
Indices: 8894350--8894410 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
8894340 TTTTTTTCTC
8894350 TTTTTCATATTTTT-ATTTTGACTTTGATTGAT
1 TTTTTC-TATTTTTGATTTTGACTTTGATTGAT
* *
8894382 TTTTTCTTTTTTTGCTTTTGACTTTGATT
1 TTTTTCTATTTTTGATTTTGACTTTGATT
8894411 TTTTTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.13, C:0.08, G:0.10, T:0.69
Consensus pattern (32 bp):
TTTTTCTATTTTTGATTTTGACTTTGATTGAT
Found at i:8899141 original size:67 final size:67
Alignment explanation
Indices: 8899070--8899198 Score: 249
Period size: 67 Copynumber: 1.9 Consensus size: 67
8899060 ATATCTCCTT
8899070 TTTTTAAAAAAAATATAGAAATATAATAATGAATTGTTAAATATATTATAAAATAAAAACATCAA
1 TTTTTAAAAAAAATATAGAAATATAATAATGAATTGTTAAATATATTATAAAATAAAAACATCAA
8899135 GC
66 GC
*
8899137 TTTTTTAAAAAAATATAGAAATATAATAATGAATTGTTAAATATATTATAAAATAAAAACAT
1 TTTTTAAAAAAAATATAGAAATATAATAATGAATTGTTAAATATATTATAAAATAAAAACAT
8899199 AAAGAGATAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (67 bp):
TTTTTAAAAAAAATATAGAAATATAATAATGAATTGTTAAATATATTATAAAATAAAAACATCAA
GC
Found at i:8899191 original size:32 final size:33
Alignment explanation
Indices: 8899083--8899191 Score: 109
Period size: 32 Copynumber: 3.3 Consensus size: 33
8899073 TTAAAAAAAA
8899083 TATAGAAATATAATAATGAATTGTTAAATATAT
1 TATAGAAATATAATAATGAATTGTTAAATATAT
* * * * *
8899116 TATA-AAATA-AAAACATCAAGCTTTTTTAAA-AAAA
1 TATAGAAATATAATA-ATGAA---TTGTTAAATATAT
8899150 TATAGAAATATAATAATGAATTGTTAAATATAT
1 TATAGAAATATAATAATGAATTGTTAAATATAT
8899183 TATA-AAATA
1 TATAGAAATA
8899192 AAAACATAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
31 3 0.05
32 21 0.36
33 10 0.17
34 6 0.10
35 16 0.27
36 3 0.05
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (33 bp):
TATAGAAATATAATAATGAATTGTTAAATATAT
Found at i:8902368 original size:209 final size:208
Alignment explanation
Indices: 8902009--8902415 Score: 656
Period size: 209 Copynumber: 2.0 Consensus size: 208
8901999 CAATATTCAA
*
8902009 AAAAGAATAACTAATACTATACTAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
1 AAAAGAATAACTAATACTATAATAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
* * * * *
8902074 AAAAAATGTGACCTTAGTCATATTTCTCAATACTAGGCATCCTAAATTGCACTATTCGCTTTTTT
66 AAAAAATGTGACCTTAGTCATATTTCTCAATACTAAGCATCCTAAATTGCACCATCCACTTTTTC
* *
8902139 ATAAGATCGAATTCATCAATGATAGACTCCATTGAAAATTCTCGAACTATCTCTTTTTCGATGTA
131 ATAAGATCAAATTCATCAATGATAGAATCCATTGAAAATTCTCGAACTATCTCTTTTTCGATGTA
8902204 TGTCAAGTAAGTG
196 TGTCAAGTAAGTG
8902217 AAAAGAATAACTAATACTATAAT-AAAATATAAAAAAATATCATTATAATTCTAAAAATTAAATT
1 AAAAGAATAACTAATACTATAATAAAAATAT-AAAAAATATCATTATAATTCTAAAAATTAAATT
* *
8902281 AAAAAATACT-TGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCCTCCACTTT
65 AAAAAA-A-TGTGACCTTAGTCATATTTCTCAATACTAAGCATCCTAAATTGCACCATCCACTTT
** *
8902345 TTCATAAGATCAAATTCATCAATGATAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGAT
128 TTCATAAGATCAAATTCATCAATGATAGAATCCATTGAAAATTCTCGAACTATCTCTTTTTCGAT
8902410 GTATGT
193 GTATGT
8902416 TACCAAGTAA
Statistics
Matches: 183, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
207 7 0.04
208 61 0.33
209 114 0.62
210 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.35
Consensus pattern (208 bp):
AAAAGAATAACTAATACTATAATAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
AAAAAATGTGACCTTAGTCATATTTCTCAATACTAAGCATCCTAAATTGCACCATCCACTTTTTC
ATAAGATCAAATTCATCAATGATAGAATCCATTGAAAATTCTCGAACTATCTCTTTTTCGATGTA
TGTCAAGTAAGTG
Found at i:8906817 original size:51 final size:49
Alignment explanation
Indices: 8906703--8906867 Score: 240
Period size: 51 Copynumber: 3.3 Consensus size: 49
8906693 CTTATGTATG
** *
8906703 ATCACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTT
1 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTA-CACTT
8906753 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTATCACTT
1 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTA-CACTT
*
8906804 CTCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
1 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTAC-ACTT
*
8906855 ATCACTTGTCACT
1 ATCACTTGCCACT
8906868 GATCAGAAGT
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
50 36 0.34
51 69 0.66
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (49 bp):
ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACACTT
Found at i:8914418 original size:15 final size:15
Alignment explanation
Indices: 8914398--8914431 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
8914388 CACCTAATAA
8914398 AAACTAAAGTATTAT
1 AAACTAAAGTATTAT
8914413 AAACTAAAGTATTAT
1 AAACTAAAGTATTAT
8914428 AAAC
1 AAAC
8914432 AAATAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.29
Consensus pattern (15 bp):
AAACTAAAGTATTAT
Found at i:8921378 original size:50 final size:50
Alignment explanation
Indices: 8921285--8921566 Score: 210
Period size: 50 Copynumber: 5.6 Consensus size: 50
8921275 TTTCCTGTAC
* * * * * * **
8921285 TGCCAATGCCATATCCCAGATATGGTATTATATGAGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * * * * * **
8921335 TGCCCATGTCATGTCCCATACATGGTCTCAAAGGGGACCTCTCATCCCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
8921385 TGCCAACGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* **
8921435 TGCCAACGCCATGTCCCAGACATGGTCTTACTTGGGACCTCTCATAATCTCAA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TCGG
* * * * *
8921488 TGACCAATGCCATGTTCTAGACATGGTCTTACACT-GG--CTCACATATCGA
1 TG-CCAACGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCATATCGG
* * * *
8921537 TGTCGATGCCATGTCCCAAACATGGTCTTA
1 TGCCAACGCCATGTCCCAGACATGGTCTTA
8921567 TATGAGATCG
Statistics
Matches: 186, Mismatches: 41, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
48 23 0.12
49 5 0.03
50 119 0.64
51 1 0.01
52 6 0.03
53 3 0.02
54 28 0.15
55 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:8943930 original size:30 final size:31
Alignment explanation
Indices: 8943896--8943976 Score: 101
Period size: 33 Copynumber: 2.6 Consensus size: 31
8943886 TTAATATTGC
* *
8943896 ATATTAATTG-ATGGAGTTTATTTTTAAAAG
1 ATATTAATTGAAGGGAGTTTATTTCTAAAAG
*
8943926 ATATTAATTGAAGGGAGTTTATTTCTAAAAAAA
1 ATATTAATTGAAGGGAGTTTATTTCT--AAAAG
*
8943959 AAATTAATTGAAGGGAGT
1 ATATTAATTGAAGGGAGT
8943977 CTGTTCAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
30 10 0.23
31 13 0.30
33 21 0.48
ACGTcount: A:0.42, C:0.01, G:0.19, T:0.38
Consensus pattern (31 bp):
ATATTAATTGAAGGGAGTTTATTTCTAAAAG
Found at i:8944175 original size:18 final size:18
Alignment explanation
Indices: 8944152--8944187 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8944142 GTATAAAATT
8944152 TTAGGAGTTGAGGATTTA
1 TTAGGAGTTGAGGATTTA
8944170 TTAGGAGTTGAGGATTTA
1 TTAGGAGTTGAGGATTTA
8944188 AATGTAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (18 bp):
TTAGGAGTTGAGGATTTA
Found at i:8946240 original size:212 final size:211
Alignment explanation
Indices: 8945869--8946298 Score: 754
Period size: 212 Copynumber: 2.0 Consensus size: 211
8945859 CAATATTCAA
8945869 AAAAGAATAACTAATACTATACTAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
1 AAAAGAATAACTAATACTATACTAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
* * *
8945934 AAAAAATGTGTCCTTAGTCCTATTTCTCAATACTAGGCATCCTAAATTGCACCATTCGCTTTTTC
66 AAAAAATGTGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCATCCGCTTTTTC
8945999 ATAAGATCGAATTCATCAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATGTA
131 ATAAGATCGAATTCATCAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATGTA
8946064 TGTCACCAAGTAAGTT
196 TGTCACCAAGTAAGTT
8946080 AAAAGAATAACTAATACTATACTAAAAATATAAAAAAATATCATTATAATTCTAAAAATTAAATT
1 AAAAGAATAACTAATACTATACTAAAAATAT-AAAAAATATCATTATAATTCTAAAAATTAAATT
*
8946145 AAAAAAACT-TGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCCTCCGCTTTT
65 AAAAAAA-TGTGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCATCCGCTTTT
* * *
8946209 TCATAAGTTTGAATTCATCAATGATAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATG
129 TCATAAGATCGAATTCATCAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATG
*
8946274 TATGTTACCAAGTAAGTT
194 TATGTCACCAAGTAAGTT
*
8946292 GAAAGAA
1 AAAAGAA
8946299 AATCATCCTC
Statistics
Matches: 208, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
211 31 0.15
212 176 0.85
213 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (211 bp):
AAAAGAATAACTAATACTATACTAAAAATATAAAAAATATCATTATAATTCTAAAAATTAAATTA
AAAAAATGTGACCTTAGTCCTATTTCTCAATACTAAGCATCCTAAATTGCACCATCCGCTTTTTC
ATAAGATCGAATTCATCAATGACAGAATCTGTTGAAAATTCTCGAGCTATCTCTTTTTCGATGTA
TGTCACCAAGTAAGTT
Found at i:8953257 original size:19 final size:19
Alignment explanation
Indices: 8953233--8953292 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
8953223 GTTCAGATTC
8953233 AATAAAAAAATAAAATCAA
1 AATAAAAAAATAAAATCAA
*
8953252 AATAAAAAAACAAAATCAA
1 AATAAAAAAATAAAATCAA
* *
8953271 AAAAAAAAAATCAAAGTCAA
1 AATAAAAAAAT-AAAATCAA
8953291 AA
1 AA
8953293 GCAAAAAGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 27 0.75
20 9 0.25
ACGTcount: A:0.78, C:0.08, G:0.02, T:0.12
Consensus pattern (19 bp):
AATAAAAAAATAAAATCAA
Found at i:8953261 original size:14 final size:14
Alignment explanation
Indices: 8953244--8953285 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
8953234 ATAAAAAAAT
*
8953244 AAAATCAAAAT-AA
1 AAAAACAAAATCAA
8953257 AAAAACAAAATCAA
1 AAAAACAAAATCAA
*
8953271 AAAAAAAAAATCAA
1 AAAAACAAAATCAA
8953285 A
1 A
8953286 GTCAAAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAAACAAAATCAA
Found at i:8953280 original size:20 final size:20
Alignment explanation
Indices: 8953236--8953292 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
8953226 CAGATTCAAT
* *
8953236 AAAAAAATAAAATC-AAAAT
1 AAAAAAACAAAATCAAAAAA
8953255 AAAAAAACAAAATCAAAAAA
1 AAAAAAACAAAATCAAAAAA
* *
8953275 AAAAAATCAAAGTCAAAA
1 AAAAAAACAAAATCAAAA
8953293 GCAAAAAGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.79, C:0.09, G:0.02, T:0.11
Consensus pattern (20 bp):
AAAAAAACAAAATCAAAAAA
Found at i:8955104 original size:87 final size:87
Alignment explanation
Indices: 8954955--8955454 Score: 775
Period size: 87 Copynumber: 5.7 Consensus size: 87
8954945 GTGAAAATCA
* * * *
8954955 AAAACAAAGACTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATACCAAATCTTACCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
*
8955020 GCGTTAACAGCGAAGCAGACCG
66 GCGTTAACAACGAAGCAGACCG
*
8955042 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCC
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
* *
8955107 GCGTTAACAGCGAAGCAGACCA
66 GCGTTAACAACGAAGCAGACCG
* * * * *
8955129 AAAACAAAGCCTTGCCTCCATCTGCTGCAGTGGAGCTGGTTAAAGATAACAGATATTTCTTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
* *
8955194 GCGTTAACATCGAAGCAAACCG
66 GCGTTAACAACGAAGCAGACCG
8955216 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
* *
8955281 GCGTTAACAACGAAGCAAACTG
66 GCGTTAACAACGAAGCAGACCG
* *
8955303 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAAATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
* * **
8955368 GTGTTAACAACGAAACAGATTG
66 GCGTTAACAACGAAGCAGACCG
* *
8955390 AAAACAAAGCCTTGCCTTCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
8955455 AAGCACTAGC
Statistics
Matches: 383, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 383 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (87 bp):
AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCT
GCGTTAACAACGAAGCAGACCG
Found at i:8955916 original size:142 final size:142
Alignment explanation
Indices: 8955745--8956210 Score: 736
Period size: 142 Copynumber: 3.3 Consensus size: 142
8955735 AGAAAATAAG
* * *
8955745 TCTTATCCCCCTGAAGTTACAGTGGAGTAGATCGCAGT-AGATTGAAGCCAGAAATCTTATCTCC
1 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAGATTGAAGCCAGAAATCTTATCTCC
* *
8955809 TTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACATTGGAGCGGA
65 TTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGA
*
8955874 TTAAAATAAAGGG
130 TTAAAATAAAGGA
* * * * *
8955887 TCTTATCTCTCTAAAGTTACAGTAAAGTAGATCGCATCAGTTTGAAGCCAGAAATCTCATCTCAT
1 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCT
* *
8955952 TGAGATTACAGCGGAGCAGATTGAAGCTAATAATCCTATCTCCCTGAGATTACAGTGGAGTGGAT
66 TGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGAT
8956017 TAAAATAAAGGA
131 TAAAATAAAGGA
*
8956029 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCC
1 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCT
* * * *
8956094 TGAGATTACAACGGAGCATATTGAAGCTAGTAATCTTATCTCCCTGAGAATACAGTGGAGCGGAT
66 TGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGAT
*
8956159 TAATATAAAGGA
131 TAAAATAAAGGA
*
8956171 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATCAG
1 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
8956211 GTCTTATCTC
Statistics
Matches: 296, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 1 0.00
142 295 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCT
TGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGAT
TAAAATAAAGGA
Found at i:8956036 original size:44 final size:44
Alignment explanation
Indices: 8955988--8956237 Score: 118
Period size: 44 Copynumber: 5.5 Consensus size: 44
8955978 CTAATAATCC
8955988 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCT
* * * * * *
8956032 TATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCT
1 TATCTCCCTGAGA-TTACAGT-G-G-AG-T-GGATTAAAAT-AA---AG-GATCT
** *** ** *
8956086 TATCTCCCTGAGATTACAACGGAGCATATTGAAGCT--AGTAATCT
1 TATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATAAAG-GATCT
* * *
8956130 TATCTCCCTGAGAATACAGTGGAGCGGATTAATATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCT
* * * ** *
8956174 TATCTCTCTGA-AGTTACAGTAGAGTAGATT-GCAT-CAGG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGTGGATTAAAATAAAGGATCT
8956215 TATCTCCCTGAGATTACAGTGGA
1 TATCTCCCTGAGATTACAGTGGA
8956238 ATAGACCGAA
Statistics
Matches: 154, Mismatches: 35, Indels: 37
0.68 0.15 0.16
Matches are distributed among these distances:
41 22 0.14
42 4 0.03
43 7 0.05
44 76 0.49
45 3 0.02
46 1 0.01
47 2 0.01
48 1 0.01
49 8 0.05
50 4 0.03
51 2 0.01
52 1 0.01
53 3 0.02
54 19 0.12
55 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCT
Found at i:8956331 original size:50 final size:50
Alignment explanation
Indices: 8956276--8956825 Score: 414
Period size: 50 Copynumber: 11.0 Consensus size: 50
8956266 TCCCAGGCGA
* * **
8956276 TGCAGTGGAACAGATTAAAGCCATATTGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
* ** * * * * * * * *
8956326 GGCAGTTCAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAG
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
* * * *
8956376 TGTAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
** * * * *
8956426 TGCAGTTAAAAAGATTAAAGCCACAGCGGTGAATCTTACTT-CTCTAGCGA-
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGA-C-AT
** * *
8956476 TGCAGCAGAATAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
** * * * * *
8956526 TGCAGTTAAAAAGATTAAAACCACAGCGGT-AACTCTTACTT-CTCTAGCGA-
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAA-TCTTGCTTCCCCGA-C-AT
* *
8956576 TGCAGCGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
** * * * * *
8956626 TGCAGTTAAAAAGATTAAAACCACAGCGGT-AACTCTTACTT-CTCTAGCGA-
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAA-TCTTGCTTCCCCGA-C-AT
* * * **
8956676 TGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTAACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
** * * * * * **
8956726 TGCAGTTAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCCCTGGCGG
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
* * *
8956776 TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTGCCTGACAT
1 TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
8956826 CACAGTTAAG
Statistics
Matches: 378, Mismatches: 106, Indels: 32
0.73 0.21 0.06
Matches are distributed among these distances:
49 16 0.04
50 347 0.92
51 15 0.04
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (50 bp):
TGCAGTGGAAAAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
Found at i:8956841 original size:100 final size:99
Alignment explanation
Indices: 8956272--8956834 Score: 743
Period size: 100 Copynumber: 5.6 Consensus size: 99
8956262 ATTTTCCCAG
* * * * *
8956272 GCGATGCAGTGGAACAGATTAAAGCCATATTGGTGAATCTTGCTTCCCCGACATGGCAGTTCAAA
1 GCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * *
8956337 AGATTAAAGCTACAACAGCGAATCTTACCTCCC-A
66 AGATTAAAGCCACAGC-GGGAATCTTACTTCCCTA
* * *
8956371 G-GCAGTGTAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAA
1 GCG-A-TGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAA
*
8956435 AAAGATTAAAGCCACAGCGGTGAATCTTACTTCTCTA
64 AAAGATTAAAGCCACAGCGG-GAATCTTACTTCCCTA
* *
8956472 GCGATGCAGCAGAATAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 GCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
8956537 AGATTAAAACCACAGCGGTAACTCTTACTTCTCTA
66 AGATTAAAGCCACAGCGGGAA-TCTTACTTCCCTA
*
8956572 GCGATGCAGCGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 GCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
8956637 AGATTAAAACCACAGCGGTAACTCTTACTTCTCTA
66 AGATTAAAGCCACAGCGGGAA-TCTTACTTCCCTA
**
8956672 GCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTAACATTGCAGTTAAAA
1 GCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
** *
8956737 AGATTAAAGCCACAATGGCGAATCTTACTTCCCTG
66 AGATTAAAGCCACAGCGG-GAATCTTACTTCCCTA
* * * * * **
8956772 GCGGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTGCCTGACATCACAGTTAA
1 GCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAA
8956835 GCAGATTTAC
Statistics
Matches: 420, Mismatches: 37, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
98 1 0.00
99 5 0.01
100 408 0.97
101 5 0.01
102 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (99 bp):
GCGATGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
AGATTAAAGCCACAGCGGGAATCTTACTTCCCTA
Found at i:8957842 original size:14 final size:14
Alignment explanation
Indices: 8957823--8957851 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8957813 GGAGTTGAAG
8957823 TTTTTTTATTTTAT
1 TTTTTTTATTTTAT
8957837 TTTTTTTATTTTAT
1 TTTTTTTATTTTAT
8957851 T
1 T
8957852 CTGGTTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTTATTTTAT
Found at i:8962448 original size:17 final size:16
Alignment explanation
Indices: 8962426--8962459 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8962416 GGGGATGGAG
8962426 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
8962443 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
8962459 T
1 T
8962460 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:8978549 original size:45 final size:45
Alignment explanation
Indices: 8978485--8978578 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
8978475 AATAGATACT
* *
8978485 CGGTGGATTCAGCACATAGCAACCACCTGATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTGACTAATCAATGATGTC
* * *
8978530 CGGTGGAATCAGCATATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTGACTAATCAATGATGTC
8978575 CGGT
1 CGGT
8978579 TCACATAGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTGACTAATCAATGATGTC
Found at i:8978660 original size:51 final size:50
Alignment explanation
Indices: 8978575--8978770 Score: 241
Period size: 51 Copynumber: 3.9 Consensus size: 50
8978565 CAATGATGTT
* * * *
8978575 CGGTTCACATAGTAGCCTGTACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * *
8978626 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
8978677 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
8978727 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
8978771 CACTTTCACT
Statistics
Matches: 121, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.34
51 76 0.63
52 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:8978758 original size:101 final size:101
Alignment explanation
Indices: 8978582--8978766 Score: 309
Period size: 101 Copynumber: 1.8 Consensus size: 101
8978572 GTTCGGTTCA
* *
8978582 CATAGTAGCCTGTACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTGCA
8978647 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
* *
8978684 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTGCA
8978748 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
8978767 CCATCACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
100 4 0.05
101 41 0.53
102 33 0.42
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:8992456 original size:19 final size:20
Alignment explanation
Indices: 8992418--8992457 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8992408 AGCGTTCGAT
*
8992418 AACTCAAGATAACATAAAAA
1 AACTCAAGATAAAATAAAAA
*
8992438 AACTC-AGATAAAATCAAAA
1 AACTCAAGATAAAATAAAAA
8992457 A
1 A
8992458 TCATACTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (20 bp):
AACTCAAGATAAAATAAAAA
Found at i:8992456 original size:20 final size:20
Alignment explanation
Indices: 8992418--8992457 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8992408 AGCGTTCGAT
*
8992418 AACTCAAGATAACATAAAAA
1 AACTCAAGATAAAATAAAAA
8992438 AACTC-AGATAAAATCAAAAA
1 AACTCAAGATAAAAT-AAAAA
8992458 TCATACTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (20 bp):
AACTCAAGATAAAATAAAAA
Found at i:9002633 original size:8 final size:8
Alignment explanation
Indices: 9002620--9002648 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
9002610 TTTTAAATGA
9002620 TATTTTAT
1 TATTTTAT
9002628 TATTTTAT
1 TATTTTAT
9002636 TATTTTAT
1 TATTTTAT
9002644 TATTT
1 TATTT
9002649 AGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:9006804 original size:29 final size:29
Alignment explanation
Indices: 9006762--9006819 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
9006752 GGGAAGGGTC
9006762 CATGAAATAATTTCTCATTATTACAGTAT
1 CATGAAATAATTTCTCATTATTACAGTAT
9006791 CATGAAATAATTTCTCATTATTACAGTAT
1 CATGAAATAATTTCTCATTATTACAGTAT
9006820 TAAAAACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (29 bp):
CATGAAATAATTTCTCATTATTACAGTAT
Found at i:9011229 original size:17 final size:17
Alignment explanation
Indices: 9011207--9011240 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9011197 CACTAACATT
*
9011207 AAAATGCAATGACAATA
1 AAAATGCAACGACAATA
9011224 AAAATGCAACGACAATA
1 AAAATGCAACGACAATA
9011241 TGCACAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAATGCAACGACAATA
Found at i:9019712 original size:34 final size:34
Alignment explanation
Indices: 9019669--9019742 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
9019659 AATACCAATA
* **
9019669 ATCAGTAGGGCCTTTGGCCAATTTCAGTAATAG-T
1 ATCAGTAGGGCC-TTAGCCAATAACAGTAATAGAT
*
9019703 ATCAGTAGGGCCTTAGCCCATAACAGTAATAGAT
1 ATCAGTAGGGCCTTAGCCAATAACAGTAATAGAT
9019737 ATCAGT
1 ATCAGT
9019743 CATGCAGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 16 0.46
34 19 0.54
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (34 bp):
ATCAGTAGGGCCTTAGCCAATAACAGTAATAGAT
Found at i:9020238 original size:27 final size:28
Alignment explanation
Indices: 9020204--9020435 Score: 219
Period size: 27 Copynumber: 8.6 Consensus size: 28
9020194 GGGTTATAAC
9020204 AGTCATTTTACCCTATGGGGGTATTTCG
1 AGTCATTTTACCCTATGGGGGTATTTCG
* *
9020232 A-TTATTTTACCTTATGGGGGTATTTC-
1 AGTCATTTTACCCTATGGGGGTATTTCG
* * * *
9020258 AGTTATTCTACCCTATAGGGGTATTT-T
1 AGTCATTTTACCCTATGGGGGTATTTCG
*
9020285 AGTCATTTTACCCTATGAGGGTATTTC-
1 AGTCATTTTACCCTATGGGGGTATTTCG
* *
9020312 AGTCATTTTACCCTATAGGGGTATTTTG
1 AGTCATTTTACCCTATGGGGGTATTTCG
* ** *
9020340 -GTTATTTTACCCTAACGGGGTATTT-T
1 AGTCATTTTACCCTATGGGGGTATTTCG
* * *
9020366 AGTCATTTTACCCTATGGAGGCATTTTG
1 AGTCATTTTACCCTATGGGGGTATTTCG
** **
9020394 -GTCATTTTACTTTATACGGGTATTTCG
1 AGTCATTTTACCCTATGGGGGTATTTCG
*
9020421 A-TTATTTTACCCTAT
1 AGTCATTTTACCCTAT
9020436 TTTAGGGTCT
Statistics
Matches: 165, Mismatches: 32, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 163 0.99
28 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (28 bp):
AGTCATTTTACCCTATGGGGGTATTTCG
Found at i:9020279 original size:54 final size:54
Alignment explanation
Indices: 9020203--9020435 Score: 247
Period size: 54 Copynumber: 4.3 Consensus size: 54
9020193 GGGGTTATAA
* * * *
9020203 CAGTCATTTTACCCTATGGGGGTATTTCGATTATTTTACCTTATGGGGGTATTT
1 CAGTCATTTTACCCTATAGGGGTATTTTGATCATTTTACCCTATGGGGGTATTT
* * *
9020257 CAGTTATTCTACCCTATAGGGGTATTTT-AGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATAGGGGTATTTTGA-TCATTTTACCCTATGGGGGTATTT
* * **
9020311 CAGTCATTTTACCCTATAGGGGTATTTTGGTTATTTTACCCTAACGGGGTATTT
1 CAGTCATTTTACCCTATAGGGGTATTTTGATCATTTTACCCTATGGGGGTATTT
* * * ** **
9020365 TAGTCATTTTACCCTAT-GGAGGCATTTTGGTCATTTTACTTTATACGGGTATTT
1 CAGTCATTTTACCCTATAGG-GGTATTTTGATCATTTTACCCTATGGGGGTATTT
*
9020419 C-GATTATTTTACCCTAT
1 CAG-TCATTTTACCCTAT
9020436 TTTAGGGTCT
Statistics
Matches: 151, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.03
54 147 0.97
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (54 bp):
CAGTCATTTTACCCTATAGGGGTATTTTGATCATTTTACCCTATGGGGGTATTT
Found at i:9020344 original size:81 final size:80
Alignment explanation
Indices: 9020204--9020435 Score: 297
Period size: 81 Copynumber: 2.9 Consensus size: 80
9020194 GGGTTATAAC
* * * *
9020204 AGTCATTTTACCCTATGGGGGTATTTCGATTATTTTACCTTATGGGGGTATTTCAGTTATTCTAC
1 AGTCATTTTACCCTAT-GGGGTATTTCG-TCATTTTACCTTATAGGGGTATTTCGGTTATTTTAC
9020269 CCTATA-GGGGTATTTT
64 CCTATACGGGGTATTTT
* *
9020285 AGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTTGGTTATTTTAC
1 AGTCATTTTACCCTATG-GGGTATTTC-GTCATTTTACCTTATAGGGGTATTTCGGTTATTTTAC
9020350 CCTA-ACGGGGTATTTT
64 CCTATACGGGGTATTTT
* * * * *
9020366 AGTCATTTTACCCTATGGAGGCATTTTGGTCATTTTACTTTATACGGGTATTTCGATTATTTTAC
1 AGTCATTTTACCCTATGG-GGTA-TTTCGTCATTTTACCTTATAGGGGTATTTCGGTTATTTTAC
9020431 CCTAT
64 CCTAT
9020436 TTTAGGGTCT
Statistics
Matches: 132, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
80 3 0.02
81 125 0.95
82 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (80 bp):
AGTCATTTTACCCTATGGGGTATTTCGTCATTTTACCTTATAGGGGTATTTCGGTTATTTTACCC
TATACGGGGTATTTT
Found at i:9021896 original size:17 final size:16
Alignment explanation
Indices: 9021874--9021906 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
9021864 TCAATGTCTC
9021874 CCTACAGTTTCCAGTTT
1 CCTACAGTTT-CAGTTT
9021891 CCTACAGTTTCAGTTT
1 CCTACAGTTTCAGTTT
9021907 ACTCTAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42
Consensus pattern (16 bp):
CCTACAGTTTCAGTTT
Found at i:9023040 original size:27 final size:27
Alignment explanation
Indices: 9023007--9023565 Score: 678
Period size: 27 Copynumber: 20.6 Consensus size: 27
9022997 GGGTATAACA
* *
9023007 ATCATTTTACCCAATAGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * *
9023034 ATTATTTTACCTTATGGGGGTATTTTG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * *
9023061 GTTATTCTACCCTATGGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
*
9023088 ATCATTTTATCCTATGGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
9023115 ATCATTTTACCCTATGGGGTTATTTTGTATTTC-
1 ATCATTTTACCCTATGGGG-------GTATTTCG
* * *
9023148 AGTCATTTTACCCTGTGAGGGTCTTTCG
1 A-TCATTTTACCCTATGGGGGTATTTCG
* *
9023176 GTCATTTTACCCTATGGGGGTATTTTG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * *
9023203 GTCATTTTAACCTATAGGGGTATTTCTG
1 ATCATTTTACCCTATGGGGGTATTTC-G
*
9023231 -TCATTTTACCCTATGAGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* *
9023257 GTCATTTTACCCTATAGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
9023284 ATCATTTTACCCTATGGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* *
9023311 GTCATTTTACCCTAT-GGGGTATTTCA
1 ATCATTTTACCCTATGGGGGTATTTCG
*
9023337 ATCATTTTACCCTATGGGGATATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * * **
9023364 GTTATTTTACCTTATGGGGGTATTTTA
1 ATCATTTTACCCTATGGGGGTATTTCG
*
9023391 ATCATTTTACCCTATGAGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* *
9023418 GTCATTTTACCCTATAGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
*
9023445 ATCATTTTACCCTATAGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
*
9023472 ATCATTTTACCCTAT--GGGTATTTCA
1 ATCATTTTACCCTATGGGGGTATTTCG
9023497 ATCATTTTACCCTATGGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * *
9023524 GTCATTTTACCTTATGGGGGTATTTCA
1 ATCATTTTACCCTATGGGGGTATTTCG
9023551 ATCATTTTACCCTAT
1 ATCATTTTACCCTAT
9023566 TTTAAGGTAT
Statistics
Matches: 458, Mismatches: 60, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
25 24 0.05
26 25 0.05
27 384 0.84
28 1 0.00
33 1 0.00
34 23 0.05
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
ATCATTTTACCCTATGGGGGTATTTCG
Found at i:9035340 original size:13 final size:13
Alignment explanation
Indices: 9035324--9035349 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9035314 ATTTATTAAA
9035324 ATTAATAATTTAT
1 ATTAATAATTTAT
9035337 ATTAATAATTTAT
1 ATTAATAATTTAT
9035350 TATATGACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTAATAATTTAT
Found at i:9035346 original size:30 final size:30
Alignment explanation
Indices: 9035286--9035351 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
9035276 TCAAATTTAC
9035286 TATTAAAATAAAATTTAAATATTAAATAATT
1 TATTAAAATAAAATTT-AATATTAAATAATT
9035317 TATTAAAATTAATAATTT-ATATT-AATAATT
1 TATTAAAA-TAA-AATTTAATATTAAATAATT
9035347 TATTA
1 TATTA
9035352 TATGACTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
30 12 0.36
31 13 0.39
32 3 0.09
33 5 0.15
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
TATTAAAATAAAATTTAATATTAAATAATT
Found at i:9049084 original size:189 final size:189
Alignment explanation
Indices: 9048754--9049137 Score: 556
Period size: 189 Copynumber: 2.0 Consensus size: 189
9048744 GATTCTGAGC
* * *
9048754 TTAACTCATGATTTTGGTTATAATGCTTAGCTGACAAGAGATTGAAAGCTTTGATGTTCAGAAAA
1 TTAACTCATGATTTGGGTTATAATGCTTAGCTGACAAGAGATTGAAAGCTTTGACGTTCAAAAAA
* * * *
9048819 GCTAAGTAGATGAGAAGGCAAAGAAGTGTCAAGTGAGTTTCTGCACACTATCCCTAAAATGCTAA
66 GCTAAGGAGAGGAGAAGGCAAAGAAGTGTCAAATGAGTTTCTGCACACTATACCTAAAATGCTAA
* *
9048884 GTATATTTAAGATCATATAGATATATGAGTAACCACCATTTTAGTTCTATAAGCATGAA
131 GTACATTTAAGATCATACAGATATATGAGTAACCACCATTTTAGTTCTATAAGCATGAA
* *
9048943 TTAACTTATGATTTGGGTTATAATGCTTAGCTGCCAAGAGATT-AGAAGCTTTGACGTTCAAAAA
1 TTAACTCATGATTTGGGTTATAATGCTTAGCTGACAAGAGATTGA-AAGCTTTGACGTTCAAAAA
* * * **
9049007 AGCTAAGCGA-AGGAGGAGGCAAGGAAGTGTCAAATGAGTTTCTGCACACTATACTTGGAATGCT
65 AGCTAAG-GAGAGGAGAAGGCAAAGAAGTGTCAAATGAGTTTCTGCACACTATACCTAAAATGCT
* * * *
9049071 AAGTACGTTTAAGATCGTACAGATATATGAGTATCCACCATTTTAGTTCTGTAAGCATGAA
129 AAGTACATTTAAGATCATACAGATATATGAGTAACCACCATTTTAGTTCTATAAGCATGAA
9049132 TTAACT
1 TTAACT
9049138 ACTATTTCAT
Statistics
Matches: 173, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
188 1 0.01
189 171 0.99
190 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.31
Consensus pattern (189 bp):
TTAACTCATGATTTGGGTTATAATGCTTAGCTGACAAGAGATTGAAAGCTTTGACGTTCAAAAAA
GCTAAGGAGAGGAGAAGGCAAAGAAGTGTCAAATGAGTTTCTGCACACTATACCTAAAATGCTAA
GTACATTTAAGATCATACAGATATATGAGTAACCACCATTTTAGTTCTATAAGCATGAA
Found at i:9053087 original size:7 final size:7
Alignment explanation
Indices: 9053075--9053100 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9053065 CCAGTAAATG
9053075 TTAATAA
1 TTAATAA
9053082 TTAATAA
1 TTAATAA
9053089 TTAATAA
1 TTAATAA
9053096 TTAAT
1 TTAAT
9053101 GACTCAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTAATAA
Found at i:9055272 original size:13 final size:11
Alignment explanation
Indices: 9055244--9055353 Score: 81
Period size: 11 Copynumber: 10.4 Consensus size: 11
9055234 TATTTTTTAA
9055244 TTTTAAAATAT
1 TTTTAAAATAT
9055255 TTTTAAAATAT
1 TTTTAAAATAT
* *
9055266 TTTT---TTAA
1 TTTTAAAATAT
9055274 TTTTAAAATAT
1 TTTTAAAATAT
9055285 TTTTAAAATACT
1 TTTTAAAATA-T
** *
9055297 TTTT--TTTAA
1 TTTTAAAATAT
9055306 TTTTAAAATAT
1 TTTTAAAATAT
9055317 TTTTAAAATAAT
1 TTTTAAAAT-AT
**
9055329 TTTT-TTA-AT
1 TTTTAAAATAT
9055338 TTTTAAAATAAT
1 TTTTAAAAT-AT
9055350 TTTT
1 TTTT
9055354 GGTATTTATT
Statistics
Matches: 75, Mismatches: 14, Indels: 19
0.69 0.13 0.18
Matches are distributed among these distances:
8 6 0.08
9 10 0.13
10 3 0.04
11 39 0.52
12 17 0.23
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:9055290 original size:62 final size:65
Alignment explanation
Indices: 9055227--9055353 Score: 215
Period size: 62 Copynumber: 2.0 Consensus size: 65
9055217 AAATTAATTT
*
9055227 AAATATTTATTTTTTAATTTTAAAATATTTTTAAAAT-ATTTTTTTAA-TTTTAAAAT-ATTTTT
1 AAATACTT-TTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTTAATTTTTAAAATAATTTTT
9055289 A
65 A
9055290 AAATACTTTTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTTAATTTTTAAAATAATTTTT
1 AAATACTTTTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTTAATTTTTAAAATAATTTTT
9055354 GGTATTTATT
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
62 28 0.47
63 17 0.28
64 9 0.15
65 6 0.10
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (65 bp):
AAATACTTTTTTTTAATTTTAAAATATTTTTAAAATAATTTTTTTAATTTTTAAAATAATTTTTA
Found at i:9055306 original size:32 final size:31
Alignment explanation
Indices: 9055227--9055353 Score: 193
Period size: 32 Copynumber: 4.0 Consensus size: 31
9055217 AAATTAATTT
9055227 AAATATTTATTTTTTAATTTTAAAATATTTTTA
1 AAATA-TT-TTTTTTAATTTTAAAATATTTTTA
9055260 AAATA-TTTTTTTAATTTTAAAATATTTTTA
1 AAATATTTTTTTTAATTTTAAAATATTTTTA
9055290 AAATACTTTTTTTTAATTTTAAAATATTTTTA
1 AAATA-TTTTTTTTAATTTTAAAATATTTTTA
*
9055322 AAATAATTTTTTTAATTTTTAAAATAATTTTT
1 AAATATTTTTTTTAA-TTTTAAAAT-ATTTTT
9055354 GGTATTTATT
Statistics
Matches: 89, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
30 29 0.33
31 10 0.11
32 39 0.44
33 11 0.12
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (31 bp):
AAATATTTTTTTTAATTTTAAAATATTTTTA
Found at i:9055365 original size:22 final size:20
Alignment explanation
Indices: 9055314--9055367 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 20
9055304 AATTTTAAAA
*
9055314 TATTTTTAAAATAATTTTTT
1 TATTTTTAAAATAATTTTTG
9055334 TAATTTTTAAAATAATTTTTGG
1 T-ATTTTTAAAATAATTTTT-G
9055356 TATTTATTAAAA
1 TATTT-TTAAAA
9055368 AAATGGGTCG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 1 0.03
21 22 0.73
22 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (20 bp):
TATTTTTAAAATAATTTTTG
Found at i:9058316 original size:3 final size:3
Alignment explanation
Indices: 9058308--9058332 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9058298 CATATAAATT
9058308 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
9058333 CAAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:9061152 original size:36 final size:36
Alignment explanation
Indices: 9061105--9061177 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
9061095 GGGCTAATAA
9061105 TATTTTTTTTAATACAAGAATGAATTGATTCTAAAC
1 TATTTTTTTTAATACAAGAATGAATTGATTCTAAAC
9061141 TATTTTTTTTAATACAAGAATGAATTGATTCTAAAC
1 TATTTTTTTTAATACAAGAATGAATTGATTCTAAAC
9061177 T
1 T
9061178 TAGACTAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.45
Consensus pattern (36 bp):
TATTTTTTTTAATACAAGAATGAATTGATTCTAAAC
Found at i:9062227 original size:19 final size:18
Alignment explanation
Indices: 9062194--9062232 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
9062184 TGTAATTATT
*
9062194 AGAATAAACACAAATTAAA
1 AGAATAAAAACAAA-TAAA
*
9062213 AGAATAAAAATAAATAAA
1 AGAATAAAAACAAATAAA
9062231 AG
1 AG
9062233 CCTGAAAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (18 bp):
AGAATAAAAACAAATAAA
Found at i:9080602 original size:15 final size:15
Alignment explanation
Indices: 9080577--9080611 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9080567 AACTCTATTT
*
9080577 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
9080591 TAATTAATATTAAGA
1 TAATTAATATTAAGA
9080606 TAATTA
1 TAATTA
9080612 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:9087085 original size:4 final size:4
Alignment explanation
Indices: 9087072--9087141 Score: 56
Period size: 4 Copynumber: 17.5 Consensus size: 4
9087062 CAACCCAATT
* * * *
9087072 TTTA -TTA TTTA TTTA TTTA -TTA TTTT TTTCT TTTC TTTA TTTA TTAA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT-A TTTA TTTA TTTA TTTA
9087119 TTTA TTTTA TTT- TATTA TTTA TT
1 TTTA -TTTA TTTA T-TTA TTTA TT
9087142 ACTTATTTGG
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
3 7 0.13
4 39 0.71
5 9 0.16
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:9087121 original size:25 final size:25
Alignment explanation
Indices: 9087068--9087142 Score: 84
Period size: 24 Copynumber: 3.0 Consensus size: 25
9087058 GAGGCAACCC
*
9087068 AATTT-TTATTATTTATTTATTTATT
1 AATTTATT-TTATTTTTTTATTTATT
*
9087093 -ATTT-TTTTCTTTTCTTTATTTATT
1 AATTTATTTTATTTT-TTTATTTATT
*
9087117 AATTTATTTTATTTTATTATTTATT
1 AATTTATTTTATTTTTTTATTTATT
9087142 A
1 A
9087143 CTTATTTGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
23 5 0.12
24 16 0.37
25 14 0.33
26 8 0.19
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (25 bp):
AATTTATTTTATTTTTTTATTTATT
Found at i:9087127 original size:17 final size:17
Alignment explanation
Indices: 9087071--9087141 Score: 58
Period size: 17 Copynumber: 4.1 Consensus size: 17
9087061 GCAACCCAAT
*
9087071 TTTTATTAT-TTATTTA
1 TTTTATTTTATTATTTA
* *
9087087 TTTATTATTTTTTTCTTT-
1 -TT-TTATTTTATTATTTA
9087105 TCTTTA-TTTATTAATTTA
1 T-TTTATTTTATT-ATTTA
9087123 TTTTATTTTATTATTTA
1 TTTTATTTTATTATTTA
9087140 TT
1 TT
9087142 ACTTATTTGG
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
16 5 0.11
17 20 0.45
18 14 0.32
19 5 0.11
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTATTATTTA
Found at i:9087148 original size:32 final size:32
Alignment explanation
Indices: 9087069--9087148 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
9087059 AGGCAACCCA
* *
9087069 ATTTTTATTATTTATTTATTTATTATTTTTTT
1 ATTTTTATTATTTATTAATTTATTATTATTTT
*
9087101 CTTTTCT-TTATTTATTAATTTATT-TTATTTT
1 ATTTT-TATTATTTATTAATTTATTATTATTTT
*
9087132 ATTATTTATTACTTATT
1 ATT-TTTATTATTTATT
9087149 TGGATATTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 9 0.22
32 30 0.75
33 1 0.03
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (32 bp):
ATTTTTATTATTTATTAATTTATTATTATTTT
Found at i:9088158 original size:101 final size:100
Alignment explanation
Indices: 9087969--9088159 Score: 235
Period size: 101 Copynumber: 1.9 Consensus size: 100
9087959 AAGAACATGT
* *
9087969 TGGGCTGAGTAACCGGGGTGGAGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCGATGTG
1 TGGGCTGAGTAACCGGGGTGGAGTGCTTGGCTATCATCTCTCTTCGCATCAAAAGGTTCGATATG
* ** *
9088034 TTCTTAAGTAAAACTTATAATAAATTAGGAGTCTAC
66 TCCAAAAGTAAAAC-AATAATAAATTAGGAGTCTAC
* **
9088070 TGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTATCATCTCTCTTCGTGTCAAAAGGTTCAGTATA
1 TGGGCTGAGTAACCGGGGTGGAGTGCTTGGCTATCATCTCTCTTCGCATCAAAAGGTTC-G-ATA
9088135 T-TCCAAAAGCATAAAA-AAT-ATAAAT
64 TGTCCAAAAG--TAAAACAATAATAAAT
9088160 AATAAATAAA
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
101 61 0.79
102 8 0.10
103 3 0.04
104 5 0.06
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (100 bp):
TGGGCTGAGTAACCGGGGTGGAGTGCTTGGCTATCATCTCTCTTCGCATCAAAAGGTTCGATATG
TCCAAAAGTAAAACAATAATAAATTAGGAGTCTAC
Found at i:9088168 original size:20 final size:21
Alignment explanation
Indices: 9088147--9088196 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 21
9088137 CCAAAAGCAT
9088147 AAAAAATATAAAT-AATAAATA
1 AAAAAATA-AAATAAATAAATA
9088168 AATATAAATCAAAATAAATAAATA
1 AA-A-AAAT-AAAATAAATAAATA
9088192 AAAAA
1 AAAAA
9088197 GAAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
21 2 0.08
22 3 0.12
23 9 0.36
24 11 0.44
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAAATAAAATAAATAAATA
Found at i:9088176 original size:10 final size:10
Alignment explanation
Indices: 9088154--9088191 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
9088144 CATAAAAAAT
9088154 ATAAATAATAA
1 ATAAAT-ATAA
9088165 ATAAATATAA
1 ATAAATATAA
9088175 ATCAAA-ATAA
1 AT-AAATATAA
9088185 ATAAATA
1 ATAAATA
9088192 AAAAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 3 0.12
10 13 0.52
11 9 0.36
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (10 bp):
ATAAATATAA
Found at i:9088201 original size:20 final size:20
Alignment explanation
Indices: 9088160--9088207 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
9088150 AAATATAAAT
* *
9088160 AATAAATAAATATAAATCAA
1 AATAAATAAATAAAAAACAA
*
9088180 AATAAATAAATAAAAAAGAA
1 AATAAATAAATAAAAAACAA
*
9088200 AAAAAATA
1 AATAAATA
9088208 TAATTTGGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (20 bp):
AATAAATAAATAAAAAACAA
Found at i:9088205 original size:24 final size:24
Alignment explanation
Indices: 9088147--9088207 Score: 61
Period size: 27 Copynumber: 2.4 Consensus size: 24
9088137 CCAAAAGCAT
* *
9088147 AAAAAATATAAATAATAAATAAAT
1 AAAAAAAATAAATAATAAATAAAG
9088171 ATAAATCAAAATAAATAAATAAA-AAAG
1 A-AAA--AAAATAAAT-AATAAATAAAG
9088198 AAAAAAAATA
1 AAAAAAAATA
9088208 TAATTTGGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
24 7 0.23
25 3 0.10
26 3 0.10
27 12 0.39
28 6 0.19
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.20
Consensus pattern (24 bp):
AAAAAAAATAAATAATAAATAAAG
Found at i:9088725 original size:15 final size:15
Alignment explanation
Indices: 9088700--9088734 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9088690 AACTCTATTT
*
9088700 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
9088714 TAATTAATATTAAGA
1 TAATTAATATTAAGA
9088729 TAATTA
1 TAATTA
9088735 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:9094025 original size:5 final size:5
Alignment explanation
Indices: 9094017--9094055 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
9094007 TATTGTTTAT
9094017 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT
9094056 GACACTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:9097487 original size:13 final size:13
Alignment explanation
Indices: 9097469--9097532 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
9097459 AGTTCTTTAT
9097469 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
9097482 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
9097495 TG-TTGTGAACAAAG
1 TGCTTTTG-A-AAAG
* *
9097509 TGTTTTTGAGAAG
1 TGCTTTTGAAAAG
9097522 TGCTTTT-AAAA
1 TGCTTTTGAAAA
9097533 ATTTTGAGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
12 7 0.17
13 24 0.59
14 6 0.15
15 4 0.10
ACGTcount: A:0.30, C:0.06, G:0.25, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:9097786 original size:19 final size:18
Alignment explanation
Indices: 9097762--9097809 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
9097752 AATTATTTAT
9097762 TAAATTTAATTAGAATATA
1 TAAATTTAATTA-AATATA
* *
9097781 TAAATTATATTTAAATATT
1 TAAATT-TAATTAAATATA
*
9097800 TAAATATAAT
1 TAAATTTAAT
9097810 AATTAAATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 3 0.12
19 16 0.67
20 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TAAATTTAATTAAATATA
Found at i:9099676 original size:71 final size:73
Alignment explanation
Indices: 9099587--9099760 Score: 187
Period size: 71 Copynumber: 2.4 Consensus size: 73
9099577 AAAATCACAT
* * *
9099587 ATAAAAAACTATTGATAAAACTAATTTAGTA-AAAAATAAGTAGAATATAAATTCAATGA-AGAA
1 ATAAAAAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAAT-ATACAA
*
9099650 AGACC-AAC
65 AAACCAAAC
* * * * *
9099658 ATAAACAACTTTTAATAAAACTAGA-TTA-CACATAAATAAGTAGAACATAAATTCAATATCCAA
1 ATAAAAAACTATTGATAAAACTA-ATTTAGCACAAAAATAAGTAGAACATAAATTCAATATACAA
9099721 AAACCAAAC
65 AAACCAAAC
* * *
9099730 ATAAATAACTGTTGATAAAACTAGTTTAGCA
1 ATAAAAAACTATTGATAAAACTAATTTAGCA
9099761 TTGTTGTTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
70 2 0.02
71 53 0.63
72 27 0.32
73 2 0.02
ACGTcount: A:0.55, C:0.12, G:0.08, T:0.25
Consensus pattern (73 bp):
ATAAAAAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAATATACAAA
AACCAAAC
Found at i:9100204 original size:18 final size:18
Alignment explanation
Indices: 9100183--9100230 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
9100173 CCCATCAATT
*
9100183 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
9100201 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
9100219 TGAACATCATTT
1 TGAACATCATTT
9100231 CTCATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:9101265 original size:15 final size:15
Alignment explanation
Indices: 9101245--9101278 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
9101235 AAGTTTTTAG
9101245 TTAATATTTAAGTAA
1 TTAATATTTAAGTAA
*
9101260 TTAATATTTATGTAA
1 TTAATATTTAAGTAA
9101275 TTAA
1 TTAA
9101279 AAATAGTCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (15 bp):
TTAATATTTAAGTAA
Found at i:9101271 original size:132 final size:132
Alignment explanation
Indices: 9101125--9101554 Score: 765
Period size: 132 Copynumber: 3.3 Consensus size: 132
9101115 CACAAGTTTT
* *
9101125 TAATTAATATTTATGTAATTAAAAATAGTCTCTTTAAGATGATTATTAATTATTATTATTTCTAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
*
9101190 TGAAAAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAGTTAATATTTA
66 TGAAAAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTTA
*
9101255 AG
131 TG
9101257 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
*
9101322 TGACAAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTTA
66 TGAAAAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTTA
9101387 TG
131 TG
*
9101389 TAATTAATATTTATGTAATTAAAAATGGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
* *
9101454 T-AACAAAATTTTACATTCTTTTACATTCTTATCTGTAATTTTACAAAG-TTTTAAATAATATTT
66 TGAA-AAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTT
9101517 ATG
130 ATG
9101520 TAATTAATATTTATGTAATTAAAAATAGTCCCTTT
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTT
9101555 TTCTGTAACG
Statistics
Matches: 287, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
131 52 0.18
132 235 0.82
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.49
Consensus pattern (132 bp):
TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
TGAAAAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTTA
TG
Found at i:9101394 original size:15 final size:15
Alignment explanation
Indices: 9101374--9101410 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
9101364 ACAAAGTTTT
9101374 TAATTAATATTTATG
1 TAATTAATATTTATG
9101389 TAATTAATATTTATG
1 TAATTAATATTTATG
9101404 TAATTAA
1 TAATTAA
9101411 AAATGGTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TAATTAATATTTATG
Found at i:9101529 original size:15 final size:15
Alignment explanation
Indices: 9101509--9101541 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
9101499 AAGTTTTAAA
9101509 TAATATTTATGTAAT
1 TAATATTTATGTAAT
9101524 TAATATTTATGTAAT
1 TAATATTTATGTAAT
9101539 TAA
1 TAA
9101542 AAATAGTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
TAATATTTATGTAAT
Found at i:9103528 original size:25 final size:25
Alignment explanation
Indices: 9103499--9103602 Score: 172
Period size: 25 Copynumber: 4.2 Consensus size: 25
9103489 AGAGGAACAA
9103499 AGCACCAGCAGAGGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
9103524 AGCACCAGCAGAGGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
* *
9103549 AGCACCAGTAGAAGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
* *
9103574 AGCACCAGCAGAGGATCAATGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
9103599 AGCA
1 AGCA
9103603 GAGGAACAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.47, C:0.27, G:0.23, T:0.03
Consensus pattern (25 bp):
AGCACCAGCAGAGGAACAAAGAACC
Found at i:9103552 original size:19 final size:19
Alignment explanation
Indices: 9103489--9103527 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
9103479 GTGGTGGAGA
*
9103489 AGAGGAACAAAGCACCAGC
1 AGAGGAACAAAGAACCAGC
9103508 AGAGGAACAAAGAACCAGC
1 AGAGGAACAAAGAACCAGC
9103527 A
1 A
9103528 CCAGCAGAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.23, G:0.26, T:0.00
Consensus pattern (19 bp):
AGAGGAACAAAGAACCAGC
Found at i:9106467 original size:90 final size:90
Alignment explanation
Indices: 9106177--9106469 Score: 295
Period size: 90 Copynumber: 3.3 Consensus size: 90
9106167 CATTGGGTTC
* * * * * * * *
9106177 TGGATAAACCACAAAAGTTGCAGTTTAATATGCTGTCAGATGGTTGTGAGTGTACAACATATTTT
1 TGGATAAACCACCAATGTTGTAGGTTAATACGCTGTCAGATGGTTGTGAATGCACAACATATTTG
* * *
9106242 CAAATGAGAGCTGTCAG-AATATGG
66 CAAATAAGAGCTGCCAGAAATTTGG
* * * * *
9106266 ATGGATAAACCACCAATATTGTAGGTTAATAGGTTGTCAGATGGTTGTGAATACACAACGTATTT
1 -TGGATAAACCACCAATGTTGTAGGTTAATACGCTGTCAGATGGTTGTGAATGCACAACATATTT
* * * * *
9106331 GCAAATAAGAGCTACTAAAAAATGGG
65 GCAAATAAGAGCTGCCAGAAATTTGG
* * * * * *
9106357 TGGATGAGCCACCAATGTTGTAGGTTAATACACTGCCAGATGGTTGTGAATGGACAACATAATTG
1 TGGATAAACCACCAATGTTGTAGGTTAATACGCTGTCAGATGGTTGTGAATGCACAACATATTTG
9106422 CAAATAAGAGCTGCCAGATAATTTGG
66 CAAATAAGAGCTGCCAGA-AATTTGG
9106448 -GGATAAACCACCAGA-GTTGTAG
1 TGGATAAACCACCA-ATGTTGTAG
9106470 ATTTATTAAT
Statistics
Matches: 162, Mismatches: 38, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
90 152 0.94
91 10 0.06
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (90 bp):
TGGATAAACCACCAATGTTGTAGGTTAATACGCTGTCAGATGGTTGTGAATGCACAACATATTTG
CAAATAAGAGCTGCCAGAAATTTGG
Found at i:9110257 original size:34 final size:34
Alignment explanation
Indices: 9110214--9110309 Score: 147
Period size: 34 Copynumber: 2.8 Consensus size: 34
9110204 ATCTAATGCT
*
9110214 CAAATCAATTCGGCAATATATATGTATACATATA
1 CAAATCAATTCAGCAATATATATGTATACATATA
*
9110248 CAAATCAATTCAACAATATATATGTATACATATA
1 CAAATCAATTCAGCAATATATATGTATACATATA
* * *
9110282 CAAATCAATTCAGTAATCTATATATATA
1 CAAATCAATTCAGCAATATATATGTATA
9110310 TTTAAATCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (34 bp):
CAAATCAATTCAGCAATATATATGTATACATATA
Found at i:9116517 original size:18 final size:17
Alignment explanation
Indices: 9116494--9116546 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
9116484 ATATATTATG
*
9116494 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
9116512 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
9116529 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
9116547 TTAATAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:9116748 original size:39 final size:41
Alignment explanation
Indices: 9116694--9116799 Score: 126
Period size: 44 Copynumber: 2.5 Consensus size: 41
9116684 TTTCCTTATG
* *
9116694 CTATTACACCTCTATTCCATTCAACAAAACACAAGAA-TA-
1 CTATTACGCCTCTATTCCATTCAACAAAACAAAAGAATTAC
*
9116733 CTATTACGCCTCTATTCCATTCCATTCAACCAAACAAAAGAATTAC
1 CTATTACGCCTC---T--ATTCCATTCAACAAAACAAAAGAATTAC
9116779 CTATTACGCCTCTATTCCATT
1 CTATTACGCCTCTATTCCATT
9116800 ACGCACCTAT
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
39 11 0.19
41 8 0.14
42 1 0.02
43 1 0.02
44 22 0.39
45 2 0.04
46 12 0.21
ACGTcount: A:0.36, C:0.30, G:0.04, T:0.30
Consensus pattern (41 bp):
CTATTACGCCTCTATTCCATTCAACAAAACAAAAGAATTAC
Found at i:9116774 original size:44 final size:46
Alignment explanation
Indices: 9116707--9116799 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 46
9116697 TTACACCTCT
*
9116707 ATTCCATTCAACAAAACACAAGAA-TA-CTATTACGCCTCTATTCC
1 ATTCCATTCAACAAAACAAAAGAATTACCTATTACGCCTCTATTCC
*
9116751 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACAAAACAAAAGAATTACCTATTACGCCTCTATTCC
9116797 ATT
1 ATT
9116800 ACGCACCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 22 0.49
45 2 0.04
46 21 0.47
ACGTcount: A:0.38, C:0.29, G:0.04, T:0.29
Consensus pattern (46 bp):
ATTCCATTCAACAAAACAAAAGAATTACCTATTACGCCTCTATTCC
Found at i:9116802 original size:16 final size:16
Alignment explanation
Indices: 9116781--9116833 Score: 81
Period size: 16 Copynumber: 3.3 Consensus size: 16
9116771 AGAATTACCT
9116781 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
9116797 ATTACGCAC-CTATTCC
1 ATTACGC-CTCTATTCC
*
9116813 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
9116829 ATTAC
1 ATTAC
9116834 AGCGAACCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
15 1 0.03
16 32 0.94
17 1 0.03
ACGTcount: A:0.25, C:0.36, G:0.04, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:9118274 original size:4 final size:4
Alignment explanation
Indices: 9118267--9118306 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
9118257 TGCATGCATG
9118267 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
9118307 ACTATTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:9120389 original size:22 final size:21
Alignment explanation
Indices: 9120354--9120411 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
9120344 TAAGGGCATC
* *
9120354 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
9120375 TACAAAATCATATCTTCTAATAT
1 TAC-AAATCATATC-TCTAAGAT
* *
9120398 TGCAGATCATATCT
1 TACAAATCATATCT
9120412 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:9121230 original size:132 final size:131
Alignment explanation
Indices: 9120844--9121257 Score: 528
Period size: 131 Copynumber: 3.1 Consensus size: 131
9120834 AATTGGTAAT
* *
9120844 TTCAACCTGCTCCACTG-TAACTTCAGGGAGATAAGG-TTGGTGGCTTAAATCTGCTTCCCTACT
1 TTCAACCTACTCCACTGCT-AC-TCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACT
* * * * * *
9120907 ACTTCGGGAAGATAAGACTCATCGTCTTTGATCTGATCCACTGCTTCTTAGGGAGACAGGATATA
63 ACTT-GGGAAGATAAGATTCGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTA
9120972 CAATC
127 CAATC
* * * *
9120977 TTCAACCTACTCCACTACTGCTCAGGGAGGTAGGACTAGTGGCTTAAATCTGCTT-CCTACTATC
1 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTA-C
** * * * *
9121041 TCAGGAAGATAAGATTCGTCGTCTTCGATCTACTCCACTACTGTTTCGGGAGACAGGATCTACAA
65 TTGGGAAGATAAGATTCGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
*
9121106 TT
130 TC
* * *
9121108 TTCAACCTACTCCACTGCTACTCAGAGAGATAGGACTGGTGGCTTAAATCTGATTCCCTACGACC
1 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTA-C
* * *
9121173 TTGGGAAGATAAGATTCGTCATCTTTGATCTGCTCCACTACTGCTAAGGGAGACAGGACCTACAA
65 TTGGGAAGATAAGATTCGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
9121238 TC
130 TC
9121240 TTCAACCTACTCCACTGC
1 TTCAACCTACTCCACTGC
9121258 AAACTTAGAG
Statistics
Matches: 240, Mismatches: 37, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
131 112 0.47
132 111 0.46
133 16 0.07
134 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (131 bp):
TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACT
TGGGAAGATAAGATTCGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAAT
C
Found at i:9121370 original size:89 final size:89
Alignment explanation
Indices: 9121254--9121630 Score: 447
Period size: 89 Copynumber: 4.2 Consensus size: 89
9121244 ACCTACTCCA
* * * * *
9121254 CTGCAAACTTAGAGAGGCAAGGTTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAGACAAG
1 CTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATTTGCTTCACTGCCAATACAGGAAGACAAG
* **
9121319 ATCTGCTGTTTTCAGTCTGCTCTG
66 ATCTGCTATCGTCAGTCTGCTCTG
* * * * *
9121343 CTGCAAACTTAGGGAGGTAAGGCTGGTGTCTTCGATTTGTTTCGCTGCCAATACAGGAAGACAAG
1 CTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATTTGCTTCACTGCCAATACAGGAAGACAAG
* *
9121408 ATCTGCTATCTTCAGTCTGTTTCT-
66 ATCTGCTATCGTCAGTCTG-CTCTG
* * *
9121432 CTACAAACTCAGGGAGGCAAGGCTGGT-TTCTTCGATTGGCTTCGCTGCCAATACAGGAAGACAA
1 CTGCAAACTCAGGGAGGCAAGGCTGGTGTT-TTCGATTTGCTTCACTGCCAATACAGGAAGACAA
*
9121496 GATCTGCTATCGTCAGTCTGCT-TCA
65 GATCTGCTATCGTCAGTCTGCTCT-G
* * * *
9121521 CTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTT-GATTTGATTCACTTCCAATACGGGAAGATAA
1 CTGCAAACTCAGGGAGGCAAGGCTGGTGT-TTTCGATTTGCTTCACTGCCAATACAGGAAGACAA
* * *
9121585 TATTTGCTATCGTCAGTCTGCTCCG
65 GATCTGCTATCGTCAGTCTGCTCTG
*
9121610 CTGTAAACTCAGGGAGGCAAG
1 CTGCAAACTCAGGGAGGCAAG
9121631 ACTTATAACT
Statistics
Matches: 250, Mismatches: 31, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
87 1 0.00
88 2 0.01
89 240 0.96
90 6 0.02
91 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (89 bp):
CTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATTTGCTTCACTGCCAATACAGGAAGACAAG
ATCTGCTATCGTCAGTCTGCTCTG
Found at i:9121429 original size:45 final size:45
Alignment explanation
Indices: 9121289--9121524 Score: 139
Period size: 45 Copynumber: 5.3 Consensus size: 45
9121279 GTGTTTTCGA
* * * *
9121289 TCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCTGTTTTCAG
1 TCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAG
* ** * * *
9121334 TCTGC-TCTGCTG-CAA-ACTTAGGGAGGTAAG-GCTGGTGTCTTC-G
1 TCTGCTTC-GCTGCCAATAC--AGGAAGACAAGATCTGCTATCTTCAG
* *
9121377 ATTTGTTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * * *
9121423 TCTGTTTCTCTACAAACT-CAGGGAGGCAAG-GCTGGTTTCTTC-G
1 TCTGCTTCGCTGCCAA-TACAGGAAGACAAGATCTGCTATCTTCAG
*
9121466 AT-TGGCTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCGTCAG
1 -TCT-GCTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAG
*
9121512 TCTGCTTCACTGC
1 TCTGCTTCGCTGC
9121525 AAACTCAGGG
Statistics
Matches: 139, Mismatches: 36, Indels: 32
0.67 0.17 0.15
Matches are distributed among these distances:
43 6 0.04
44 57 0.41
45 70 0.50
46 6 0.04
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (45 bp):
TCTGCTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAG
Found at i:9121704 original size:44 final size:44
Alignment explanation
Indices: 9121643--9122169 Score: 334
Period size: 44 Copynumber: 11.8 Consensus size: 44
9121633 TTATAACTTC
* * * * *
9121643 AATCCGCTCCAATGCAACTTTAGGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTT
* * * * **
9121687 AATCTGTTCTACTGCAACTTCAGAGAGATAAG---ATTCGCCAT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTT
* * *
9121728 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T-A--T-TAGCTTT
* * ** *
9121779 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ATTAGCTTT
* * * * * * *
9121824 AGTCTGCTCCATTGCAACTTTAAGGAGATAAGACTT-GTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTT
* * *
9121868 AATCCGTTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTT
* * **
9121912 AATCTGCTCCACTGTAACTTCAGGGAGATAAG---ATTCGCCAT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTT
* * * *
9121953 GATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T-A--T-TAGCTTT
*** * * * ** * *
9122004 AATCCATTCCACTTCAACTTTAGGGAAATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ATTAGCTTT
* * *
9122049 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TCA-CTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTT
* * *
9122091 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTT
* * *
9122135 AATCTGTTCCACTACAACTTCAGGGAAATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
9122170 CGCCATCTTC
Statistics
Matches: 366, Mismatches: 93, Indels: 48
0.72 0.18 0.09
Matches are distributed among these distances:
41 69 0.19
42 34 0.09
43 4 0.01
44 124 0.34
45 65 0.18
46 2 0.01
48 4 0.01
49 2 0.01
50 2 0.01
51 60 0.16
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTT
Found at i:9121990 original size:225 final size:224
Alignment explanation
Indices: 9121575--9122175 Score: 891
Period size: 225 Copynumber: 2.7 Consensus size: 224
9121565 CTTCCAATAC
* * * * * * **
9121575 GGGAAGATAATATTTGCTATCGTCAGTCTGCTCCGCTGTAAAC-TCAGGGAGGCAAGACTTATAA
1 GGGAA-ATAAGATTCGCTATCTTCAGTCTGCTCCACTG-CAACTTCAAGGAGATAAGACTT-TAA
* * *
9121639 CTTCAATCCGCTCCAATGCAACTTTAGGGAGATAGGATTATTGGCTTTAATCTGTTCTACTGCAA
63 CTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGTTCCACTGCAA
* *
9121704 CTTCAGAGAGATAAGATTCGCCATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGAT
128 CTTCAGGGAGATAAGATTCGCCATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGAT
**
9121769 TTATAGCTTTAATCTGTTCCACTGCAACTTCA
193 TTATAGCTTTAATCCATTCCACTGCAACTTCA
* * *
9121801 GGGAAATAAGATTCGCTATCTTTAGTCTGCTCCATTGCAACTTTAAGGAGATAAGACTTGTAACT
1 GGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTT-TAACT
* * * *
9121866 TCAATCCGTTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGTAACT
65 TCAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGTTCCACTGCAACT
9121931 TCAGGGAGATAAGATTCGCCATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTT
130 TCAGGGAGATAAGATTCGCCATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTT
* *
9121996 ATAGCTTTAATCCATTCCACTTCAACTTTA
195 ATAGCTTTAATCCATTCCACTGCAACTTCA
* *
9122026 GGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC-TTCACTT
1 GGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTTTAACTT
* *
9122090 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGTTCCACTACAACTT
66 CAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGTTCCACTGCAACTT
*
9122155 CAGGGAAATAAGATTCGCCAT
131 CAGGGAGATAAGATTCGCCAT
9122176 CTTCTTCAAT
Statistics
Matches: 337, Mismatches: 37, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
223 84 0.25
224 4 0.01
225 244 0.72
226 5 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (224 bp):
GGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTTTAACTT
CAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGTTCCACTGCAACTT
CAGGGAGATAAGATTCGCCATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGATTTA
TAGCTTTAATCCATTCCACTGCAACTTCA
Found at i:9127549 original size:24 final size:23
Alignment explanation
Indices: 9127522--9127567 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
9127512 TTAAGTGTTA
*
9127522 TATGTATTATTATTTGAAATTTAT
1 TATGTATCATTATTT-AAATTTAT
9127546 TATGTATCATTATTTAAATTTA
1 TATGTATCATTATTTAAATTTA
9127568 GCATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
TATGTATCATTATTTAAATTTAT
Found at i:9132267 original size:23 final size:22
Alignment explanation
Indices: 9132224--9132281 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
9132214 TAAGGGCATC
* *
9132224 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
9132245 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
9132268 TGCATATCATATCT
1 TACAAATCATATCT
9132282 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:9132275 original size:17 final size:17
Alignment explanation
Indices: 9132253--9132296 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 17
9132243 ATTACAAAAT
9132253 CATATCTTCTAAGATTG
1 CATATCTTCTAAGATTG
9132270 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTG
*
9132289 TATATCTT
1 CATATCTT
9132297 TAAAGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.29
18 2 0.08
19 15 0.62
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (17 bp):
CATATCTTCTAAGATTG
Found at i:9134770 original size:20 final size:22
Alignment explanation
Indices: 9134733--9134772 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
9134723 TGGTATTATT
*
9134733 TTATATTATGTTATTTTATATA
1 TTATATTATGTTAATTTATATA
9134755 TTAT-TTATG-TAATTTATA
1 TTATATTATGTTAATTTATA
9134773 ACATATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 5 0.29
22 4 0.24
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (22 bp):
TTATATTATGTTAATTTATATA
Found at i:9134902 original size:16 final size:16
Alignment explanation
Indices: 9134883--9134932 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
9134873 AAATTTTAAT
9134883 AAATTAAAAATATATA
1 AAATTAAAAATATATA
*
9134899 AAATTATTAAATAT-T-
1 AAATTA-AAAATATATA
9134914 AAATTAAAAATATATA
1 AAATTAAAAATATATA
9134930 AAA
1 AAA
9134933 ATATTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 6 0.21
15 7 0.24
16 10 0.34
17 6 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATTAAAAATATATA
Found at i:9134917 original size:24 final size:25
Alignment explanation
Indices: 9134868--9134932 Score: 67
Period size: 31 Copynumber: 2.3 Consensus size: 25
9134858 TGAAGACTAC
9134868 ATATAAAATTTTAATAAATTAAAAAT
1 ATATAAAATTTTAATAAATT-AAAAT
9134894 ATATAAAATTATTAAATATTAAATTAAAAAT
1 ATATAAAATT-TT--A-A-TAAATT-AAAAT
9134925 ATATAAAA
1 ATATAAAA
9134933 ATATTTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
26 10 0.29
27 2 0.06
29 1 0.03
30 1 0.03
31 20 0.59
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
ATATAAAATTTTAATAAATTAAAAT
Found at i:9134931 original size:15 final size:15
Alignment explanation
Indices: 9134881--9134931 Score: 68
Period size: 15 Copynumber: 3.3 Consensus size: 15
9134871 TAAAATTTTA
9134881 ATAAATTAAAAATAT
1 ATAAATTAAAAATAT
*
9134896 ATAAAATTATTAAATAT
1 AT-AAATTA-AAAATAT
9134913 -TAAATTAAAAATAT
1 ATAAATTAAAAATAT
9134927 ATAAA
1 ATAAA
9134932 AATATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 6 0.19
15 12 0.39
16 7 0.23
17 6 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAAATTAAAAATAT
Found at i:9139487 original size:17 final size:16
Alignment explanation
Indices: 9139465--9139503 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9139455 ACAAAATCCA
9139465 AATTTATTTCCCAATTT
1 AATTTATTT-CCAATTT
9139482 AATTTAATTTCCAATTT
1 AATTT-ATTTCCAATTT
9139499 -ATTTA
1 AATTTA
9139504 ATTTTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.05
16 4 0.19
17 12 0.57
18 4 0.19
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (16 bp):
AATTTATTTCCAATTT
Found at i:9140434 original size:18 final size:20
Alignment explanation
Indices: 9140411--9140452 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
9140401 TGACTAATGA
9140411 CTTACCAATG-TAT-GATAC
1 CTTACCAATGATATCGATAC
*
9140429 CTTACCAATGATATCGATAT
1 CTTACCAATGATATCGATAC
9140449 CTTA
1 CTTA
9140453 AGTCAAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
19 3 0.14
20 8 0.38
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
CTTACCAATGATATCGATAC
Found at i:9147829 original size:103 final size:103
Alignment explanation
Indices: 9147708--9147914 Score: 405
Period size: 103 Copynumber: 2.0 Consensus size: 103
9147698 GTGAAATGTA
*
9147708 AGCAAAACTTTCTTCTGGTTTCAATAAATTGCTTAATAAAATGATTTTCGAAAAGGAATTTAGGA
1 AGCAAAACTGTCTTCTGGTTTCAATAAATTGCTTAATAAAATGATTTTCGAAAAGGAATTTAGGA
9147773 ATTTGGTCAGTAAATTGTTTTGGGTCACTTCGGTGGTC
66 ATTTGGTCAGTAAATTGTTTTGGGTCACTTCGGTGGTC
9147811 AGCAAAACTGTCTTCTGGTTTCAATAAATTGCTTAATAAAATGATTTTCGAAAAGGAATTTAGGA
1 AGCAAAACTGTCTTCTGGTTTCAATAAATTGCTTAATAAAATGATTTTCGAAAAGGAATTTAGGA
9147876 ATTTGGTCAGTAAATTGTTTTGGGTCACTTCGGTGGTC
66 ATTTGGTCAGTAAATTGTTTTGGGTCACTTCGGTGGTC
9147914 A
1 A
9147915 ATGTAATTTT
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (103 bp):
AGCAAAACTGTCTTCTGGTTTCAATAAATTGCTTAATAAAATGATTTTCGAAAAGGAATTTAGGA
ATTTGGTCAGTAAATTGTTTTGGGTCACTTCGGTGGTC
Found at i:9149875 original size:12 final size:13
Alignment explanation
Indices: 9149846--9149875 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
9149836 TAGAGTTTTT
9149846 TTTTTACTTTTAA
1 TTTTTACTTTTAA
9149859 TTTTT-CTTTTAA
1 TTTTTACTTTTAA
9149871 TTTTT
1 TTTTT
9149876 TTCACTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTACTTTTAA
Found at i:9149899 original size:27 final size:28
Alignment explanation
Indices: 9149843--9149900 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
9149833 TTTTAGAGTT
* *
9149843 TTTTTTTTACTTTTAATTTTTCTTTTAA
1 TTTTTTTCACTTTTAATTTTTCTTTGAA
*
9149871 TTTTTTTCACTTTT-CTTCTTTC-TTGAA
1 TTTTTTTCACTTTTAATT-TTTCTTTGAA
9149898 TTT
1 TTT
9149901 AGTATATGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.72
Consensus pattern (28 bp):
TTTTTTTCACTTTTAATTTTTCTTTGAA
Found at i:9150115 original size:5 final size:5
Alignment explanation
Indices: 9150107--9150131 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9150097 AAATTAAATG
9150107 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
9150132 TATCATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:9150208 original size:24 final size:24
Alignment explanation
Indices: 9150161--9150224 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
9150151 ATTAATTTGT
* *
9150161 GTTTCAAATATTAATGTGTATGAG
1 GTTTTAAATATTAATGGGTATGAG
* *
9150185 GTTTTAAATTTTAATGGGTTTGAG
1 GTTTTAAATATTAATGGGTATGAG
*
9150209 CTTTTAAGAGTATTAA
1 GTTTTAA-A-TATTAA
9150225 ATTTAAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 26 0.81
25 1 0.03
26 5 0.16
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.45
Consensus pattern (24 bp):
GTTTTAAATATTAATGGGTATGAG
Found at i:9152592 original size:14 final size:14
Alignment explanation
Indices: 9152556--9152589 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
9152546 TCATCATTTG
*
9152556 CCTATAACAAAAAC
1 CCTATAACCAAAAC
9152570 CCTATAACCAAAAC
1 CCTATAACCAAAAC
9152584 CC-ATAA
1 CCTATAA
9152590 ACCCATATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (14 bp):
CCTATAACCAAAAC
Found at i:9153477 original size:24 final size:24
Alignment explanation
Indices: 9153445--9153490 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
9153435 TTGAATAATT
9153445 AATTCAATTTT-CAACTTCGAGTCA
1 AATTCAATTTTACAA-TTCGAGTCA
*
9153469 AATTGAATTTTACAATTCGAGT
1 AATTCAATTTTACAATTCGAGT
9153491 TCGAATAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (24 bp):
AATTCAATTTTACAATTCGAGTCA
Found at i:9157846 original size:11 final size:11
Alignment explanation
Indices: 9157830--9157900 Score: 67
Period size: 11 Copynumber: 6.5 Consensus size: 11
9157820 TAATTTTTAA
9157830 TTTTAAAATAT
1 TTTTAAAATAT
9157841 TTTTAAAATACT
1 TTTTAAAATA-T
** *
9157853 TTTTTTATTAT
1 TTTTAAAATAT
*
9157864 TTTT--TA-AT
1 TTTTAAAATAT
9157872 TTTTAAAATAT
1 TTTTAAAATAT
9157883 TTTTAAAATACT
1 TTTTAAAATA-T
9157895 TTTTAA
1 TTTTAA
9157901 TTTTTTTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
8 6 0.12
10 1 0.02
11 27 0.55
12 15 0.31
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:9157874 original size:31 final size:30
Alignment explanation
Indices: 9157839--9157941 Score: 93
Period size: 30 Copynumber: 3.4 Consensus size: 30
9157829 ATTTTAAAAT
** * *
9157839 ATTTTTAAAATACTTTTTTTATTATTTTTTA
1 ATTTTTAAAATA-TTTTTAAAATACTTTTTA
9157870 ATTTTTAAAATATTTTTAAAATACTTTTTA
1 ATTTTTAAAATATTTTTAAAATACTTTTTA
** *
9157900 ATTTTT--TTTAATTTTAAAATACTTTTTTTA
1 ATTTTTAAAATATTTTTAAAATAC--TTTTTA
*
9157930 ATTTTAAAAATA
1 ATTTTTAAAATA
9157942 AATTTTTAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
28 13 0.22
30 31 0.53
31 12 0.21
32 2 0.03
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (30 bp):
ATTTTTAAAATATTTTTAAAATACTTTTTA
Found at i:9157886 original size:20 final size:20
Alignment explanation
Indices: 9157863--9157941 Score: 74
Period size: 20 Copynumber: 4.0 Consensus size: 20
9157853 TTTTTTATTA
9157863 TTTTTTAATTTTTAAAATAT
1 TTTTTTAATTTTTAAAATAT
** *
9157883 TTTTAAAATACTTTT-TAAT-T
1 TTTTTTAAT--TTTTAAAATAT
9157903 TTTTTTAA-TTTTAAAATACT
1 TTTTTTAATTTTTAAAATA-T
*
9157923 TTTTTTAATTTTAAAAATA
1 TTTTTTAATTTTTAAAATA
9157942 AATTTTTAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.09
18 3 0.07
20 23 0.50
21 12 0.26
22 4 0.09
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTTAATTTTTAAAATAT
Found at i:9157930 original size:42 final size:41
Alignment explanation
Indices: 9157823--9157926 Score: 167
Period size: 42 Copynumber: 2.5 Consensus size: 41
9157813 ATATTTTTAA
*
9157823 TTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTATTAT
1 TTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAATTAT
9157864 TTTTTAATTTTTAAAATATTTTTAAAATAC-TTTTTAATT-T
1 TTTTTAA-TTTTAAAATATTTTTAAAATACTTTTTTAATTAT
9157904 TTTTTAATTTTAAAATACTTTTT
1 TTTTTAATTTTAAAATA-TTTTT
9157927 TTAATTTTAA
Statistics
Matches: 60, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
39 10 0.17
40 13 0.22
41 15 0.25
42 22 0.37
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (41 bp):
TTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAATTAT
Found at i:9157947 original size:21 final size:20
Alignment explanation
Indices: 9157903--9157948 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
9157893 CTTTTTAATT
**
9157903 TTTTTTAATTTTAAAATACT
1 TTTTTTAATTTTAAAATAAA
9157923 TTTTTTAATTTTAAAAATAAA
1 TTTTTTAATTTT-AAAATAAA
9157944 TTTTT
1 TTTTT
9157949 AGTATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTTAATTTTAAAATAAA
Found at i:9163314 original size:20 final size:21
Alignment explanation
Indices: 9163267--9163327 Score: 95
Period size: 21 Copynumber: 2.8 Consensus size: 21
9163257 TCCAACCATA
9163267 TGTTTTGAAGAAGAAAAATGG
1 TGTTTTGAAGAAGAAAAATGG
9163288 TGTTTTGAAGAAGAAAAATGG
1 TGTTTTGAAGAAGAAAAATGG
*
9163309 TGTTTGGCAAGAGAGAAAA
1 TGTTTTG-AAGA-AGAAAA
9163328 TGAGAGAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
21 27 0.73
22 4 0.11
23 6 0.16
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.26
Consensus pattern (21 bp):
TGTTTTGAAGAAGAAAAATGG
Found at i:9169209 original size:13 final size:13
Alignment explanation
Indices: 9169191--9169215 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9169181 ACAATTTAAT
9169191 AATTTTAAATAAA
1 AATTTTAAATAAA
9169204 AATTTTAAATAA
1 AATTTTAAATAA
9169216 TTTAATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTTTAAATAAA
Found at i:9171393 original size:22 final size:22
Alignment explanation
Indices: 9171368--9171412 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
9171358 TTGAAAGATA
9171368 AAAGAGATTAGAATAATCCTGG
1 AAAGAGATTAGAATAATCCTGG
9171390 AAAGAGATTAGAATAATCCTGG
1 AAAGAGATTAGAATAATCCTGG
9171412 A
1 A
9171413 TTTTATGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (22 bp):
AAAGAGATTAGAATAATCCTGG
Found at i:9180952 original size:104 final size:104
Alignment explanation
Indices: 9180772--9180995 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
9180762 TGTATATAAA
** * *
9180772 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
9180837 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
9180876 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
9180940 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
9180980 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
9180996 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Done.