Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 36 of 126
Found at i:10653311 original size:36 final size:36
Alignment explanation
Indices: 10653246--10653314 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
10653236 TTTGACTTGA
* *
10653246 ATATTATGTGATATGAAATGTTCTGAAATTATGTCT
1 ATATTATATGATATGAAATGTTCTAAAATTATGTCT
10653282 ATATTATATGATATGAAATGTT-TCAAAATTATG
1 ATATTATATGATATGAAATGTTCT-AAAATTATG
10653315 CATGTTTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 1 0.03
36 29 0.97
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.43
Consensus pattern (36 bp):
ATATTATATGATATGAAATGTTCTAAAATTATGTCT
Found at i:10654183 original size:21 final size:21
Alignment explanation
Indices: 10654142--10654196 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
10654132 TATTTTCATC
* *
10654142 TATTTTATATTCATATTTAAAT
1 TATTATATATT-ATATATAAAT
10654164 TATTATATATTATATATAAAT
1 TATTATATATTATATATAAAT
10654185 T-TTAATATATTA
1 TATT-ATATATTA
10654197 GTTATTTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 18 0.60
22 10 0.33
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTATATATTATATATAAAT
Found at i:10655696 original size:56 final size:54
Alignment explanation
Indices: 10655636--10656012 Score: 169
Period size: 50 Copynumber: 7.1 Consensus size: 54
10655626 GGGCTGTCAT
10655636 TGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGGTGGTGCCCTGCCAA
1 TGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGGTGGTG--CTGCCAA
* * * * * *
10655692 TGGCCGACACCACCTTTATA-TAAAAAA---AAAATTACATTTTGGCT--TG-T--CAT
1 TGGCCGGCACCA---GTATACGAAAAAATTCAAAA-AAAATTTTGG-TGGTGCTGCCAA
10655742 TGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGGTGGTGCCCTGCCAA
1 TGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGGTGGTG--CTGCCAA
* * * * * *
10655798 TGGCCGACACCACCTTTATA-TAAAAAA---AAAATTACATTTTGGCT--TG-T--CAT
1 TGGCCGGCACCA---GTATACGAAAAAATTCAAAA-AAAATTTTGG-TGGTGCTGCCAA
10655848 TGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTT-GTGGTGGCTTGCCAA
1 TGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGGTGGT-GC-TGCCAA
* * * * * * * *
10655903 TGGCTGGCACCACCTTTATGTAAAAAA---AAAATTACA-TTT--TGG-GCTGTCAT
1 TGGCCGGCACCA-GTATACG-AAAAAATTCAAAA-AAAATTTTGGTGGTGCTGCCAA
* *
10655953 TGGTCGGCACTAGTATACGAAAAAATTCAAAAAAAAATTTT-GTGGTGGCTTGCCAA
1 TGGCCGGCACCAGTATACGAAAAAATTC-AAAAAAAATTTTGGTGGT-GC-TGCCAA
10656009 TGGC
1 TGGC
10656013 TGGTACCACT
Statistics
Matches: 234, Mismatches: 43, Indels: 88
0.64 0.12 0.24
Matches are distributed among these distances:
47 8 0.03
48 19 0.08
49 6 0.03
50 54 0.23
51 15 0.06
52 9 0.04
53 7 0.03
54 8 0.03
55 29 0.12
56 51 0.22
57 8 0.03
58 12 0.05
59 8 0.03
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (54 bp):
TGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGGTGGTGCTGCCAA
Found at i:10655914 original size:105 final size:106
Alignment explanation
Indices: 10655556--10656285 Score: 929
Period size: 106 Copynumber: 6.9 Consensus size: 106
10655546 AAAAAAAAGA
* * * * *
10655556 AAAAAAAATTTGGGTGCTGGTCTGTCAATGGCCGGCACCACATTTATGTAAAAAAAAAAATTTAC
1 AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGT-AAAAAAAAAA-TTAC
10655621 ATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
64 ATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
* * *
10655664 AAAAAAAATTTTGGTGGTGCCCTGCCAATGGCCGACACCACCTTTATATAAAAAAAAAATTACAT
1 AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAAAAAAAAAATTACAT
10655729 TTT-GGCTTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
66 TTTGGGC-TGTCATTGGCCGGCACCAGTATACGAAAAAATTC
* * *
10655770 AAAAAAAATTTTGGTGGTGCCCTGCCAATGGCCGACACCACCTTTATATAAAAAAAAAATTACAT
1 AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAAAAAAAAAATTACAT
10655835 TTT-GGCTTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
66 TTTGGGC-TGTCATTGGCCGGCACCAGTATACGAAAAAATTC
* *
10655876 AAAAAAAATTTT-GTGGTGGCTTGCCAATGGCTGGCACCACCTTTATGTAAAAAAAAAATTACAT
1 AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAAAAAAAAAATTACAT
* *
10655940 TTTGGGCTGTCATTGGTCGGCACTAGTATACGAAAAAATTC
66 TTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
* * * * ******
10655981 AAAAAAAAATTTT-GTGGTGGCTTGCCAATGGCTGGTACCACTTTTATGT--AATTTTTTTTACA
1 -AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAAAAAAAAAATTACA
* * * *
10656043 TTTTAGGCTGTCATTAGCCGACACCAATATACGAAAAAATTC
65 TTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
* * * * * *******
10656085 AAAAAAAA-ATTGGTAGTGGCCTACCAATGGCCGACAACACCTTTATGTAAATTTTTTTTTTACA
1 AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAAA-AAAAAAATTACA
* *
10656149 TTTTGGGCTATCATTGGCCGGTACCAGTATACGAAAAAATTC
65 TTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
*
10656191 AAAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGT-AAAAAAGAA-TACA
1 -AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAAAAAAAAAATTACA
*
10656254 TTTGGGGCTGTCATTGGCCGGCACCAGTATAC
65 TTTTGGGCTGTCATTGGCCGGCACCAGTATAC
10656286 CGTGAAGGAT
Statistics
Matches: 553, Mismatches: 60, Indels: 21
0.87 0.09 0.03
Matches are distributed among these distances:
102 2 0.00
103 36 0.07
104 43 0.08
105 119 0.22
106 257 0.46
107 20 0.04
108 76 0.14
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (106 bp):
AAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGTAAAAAAAAAATTACAT
TTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTC
Found at i:10655971 original size:211 final size:212
Alignment explanation
Indices: 10655555--10656285 Score: 920
Period size: 211 Copynumber: 3.5 Consensus size: 212
10655545 GAAAAAAAAG
* * * * * *
10655555 AAAAAAAAATTTGGGTGCTGGTCTGTCAATGGCCGGCACCACATTTATGTAAAAAAAAAAATTTA
1 AAAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATAT-AAAAAAAAAA-TTA
* *
10655620 CATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGGTGGTGCC
64 CATTTTAGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTT-GTGGTGGC
*
10655685 CTGCCAATGGCCGACACCACCTTTATATAAAAAAAAAATTACATTTT-GGCTTGTCATTGGCCGG
128 CTGCCAATGGCCGACACCACCTTTATGTAAAAAAAAAATTACATTTTGGGC-TGTCATTGGCCGG
10655749 CACCAGTATACGAAAAAATTC
192 CACCAGTATACGAAAAAATTC
* *
10655770 -AAAAAAAATTTTGGTGGTGCCCTGCCAATGGCCGACACCACCTTTATATAAAAAAAAAATTACA
1 AAAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATATAAAAAAAAAATTACA
*
10655834 TTTT-GGCTTGTCATTGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGTGGTGGCTT
66 TTTTAGGC-TGTCATTGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGTGGTGGCCT
* * *
10655898 GCCAATGGCTGGCACCACCTTTATGTAAAAAAAAAATTACATTTTGGGCTGTCATTGGTCGGCAC
130 GCCAATGGCCGACACCACCTTTATGTAAAAAAAAAATTACATTTTGGGCTGTCATTGGCCGGCAC
*
10655963 TAGTATACGAAAAAATTC
195 CAGTATACGAAAAAATTC
* * * ** ******
10655981 AAAAAAAAATTTT-GTGGTGGCTTGCCAATGGCTGGTACCA-CTTT-TATGTAATTTTTTTTACA
1 AAAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATATAAAAAAAAAATTACA
* * * * * * *
10656043 TTTTAGGCTGTCATTAGCCGACACCAATATACGAAAAAATTCAAAAAAAAATTGGTAGTGGCCTA
66 TTTTAGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGTGGTGGCCTG
* ******* * *
10656108 CCAATGGCCGACAACACCTTTATGTAAATTTTTTTTTTACATTTTGGGCTATCATTGGCCGGTAC
131 CCAATGGCCGACACCACCTTTATGTAAA-AAAAAAATTACATTTTGGGCTGTCATTGGCCGGCAC
10656173 CAGTATACGAAAAAATTC
195 CAGTATACGAAAAAATTC
* *
10656191 AAAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATGT-AAAAAAGAA-TACA
1 AAAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATATAAAAAAAAAATTACA
**
10656254 TTTGGGGCTGTCATTGGCCGGCACCAGTATAC
66 TTTTAGGCTGTCATTGGCCGGCACCAGTATAC
10656286 CGTGAAGGAT
Statistics
Matches: 442, Mismatches: 66, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
209 88 0.20
210 63 0.14
211 162 0.37
212 76 0.17
213 12 0.03
214 41 0.09
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (212 bp):
AAAAAAAAATTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTATATAAAAAAAAAATTACA
TTTTAGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATTCAAAAAAAATTTTGTGGTGGCCTG
CCAATGGCCGACACCACCTTTATGTAAAAAAAAAATTACATTTTGGGCTGTCATTGGCCGGCACC
AGTATACGAAAAAATTC
Found at i:10657502 original size:55 final size:55
Alignment explanation
Indices: 10657438--10657613 Score: 298
Period size: 55 Copynumber: 3.2 Consensus size: 55
10657428 TCTGAGACTT
* * *
10657438 TTTTTTTTCATTCAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCT
1 TTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAACACCC
*
10657493 TTTTTTTTCATTCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCC
1 TTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAACACCC
* *
10657548 TTTTTTTTCATTCAATCTCATTTATTTTAATTTTATTTTTCTACATCTAATACCC
1 TTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAACACCC
10657603 TTTTTTTTCAT
1 TTTTTTTTCAT
10657614 CATCTAATAC
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 114 1.00
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.56
Consensus pattern (55 bp):
TTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAACACCC
Found at i:10657643 original size:25 final size:23
Alignment explanation
Indices: 10657583--10657646 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
10657573 TTTAATTTTA
10657583 TTTTTC-TACATCTAATACCCTTT
1 TTTTTCAT-CATCTAATACCCTTT
10657606 TTTTTCATCATCTAATACCCTTT
1 TTTTTCATCATCTAATACCCTTT
10657629 TTTTTCATTCAATCTAAT
1 TTTTTCA-TC-ATCTAAT
10657647 TTATTTCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
23 28 0.74
24 3 0.08
25 7 0.18
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTTCATCATCTAATACCCTTT
Found at i:10657649 original size:133 final size:133
Alignment explanation
Indices: 10657468--10658041 Score: 537
Period size: 133 Copynumber: 4.1 Consensus size: 133
10657458 TTTATTACAA
* *
10657468 CTTTATTTTTCTACATCTAACACCTTTTTTTTTCATTCAATCCCATTTATTTCAATTTTATTTTT
1 CTTT-TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCCAATTTATTTCAATTTTATTTTT
* * ** *
10657533 CTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTTAATTTTATTTTTCTACATCTAA
65 CTACATCTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAA
*
10657598 TACC
130 CACC
* *
10657602 CTTTTTTTTC-ATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTT
1 CTTTTTTTTCTA-CATCTAACACCCTTTTTTTTCATTCAATCCAATTTATTTCAATTTTATTTTT
*
10657666 CTACATTTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAA
65 CTACATCTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAA
10657731 CACC
130 CACC
* * * * **
10657735 CATTTTTTCATTAAATCT-CATTTATTACA-ACTTTATTTTTCTACATCTAACACCTTTTTTTTT
1 C--TTTTT--TT---TCTACATCTA--ACACCCTTT-TTTTTC-A-TTC-AA-TCC----AATTT
* * *
10657798 CATTCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCT
48 -ATT---T--CA--A-------TTTTATTTTTCTACATCTAACACCCATTTTTTTCATTAAATCT
** * *
10657863 CATTTATTTTAATTTTATTTTTCTACATCTAATACC
98 CATTTATTACAACTTTATTTTTCTACATCTAACACC
* *
10657899 CTTTTTTTTC-ATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTT
1 CTTTTTTTTCTA-CATCTAACACCCTTTTTTTTCATTCAATCCAATTTATTTCAATTTTATTTTT
*
10657963 CTACATTTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAA
65 CTACATCTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAA
10658028 CA-C
130 CACC
10658031 CTATTTTTTTC
1 CT-TTTTTTTC
10658042 ATTCAATCTC
Statistics
Matches: 358, Mismatches: 43, Indels: 79
0.75 0.09 0.16
Matches are distributed among these distances:
132 4 0.01
133 195 0.54
134 4 0.01
135 5 0.01
137 2 0.01
139 5 0.01
140 6 0.02
141 8 0.02
142 3 0.01
143 2 0.01
144 3 0.01
145 1 0.00
147 3 0.01
148 3 0.01
149 3 0.01
150 3 0.01
152 1 0.00
153 3 0.01
154 2 0.01
155 3 0.01
156 8 0.02
157 6 0.02
158 5 0.01
160 2 0.01
162 5 0.01
164 73 0.20
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (133 bp):
CTTTTTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCCAATTTATTTCAATTTTATTTTTC
TACATCTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAAC
ACC
Found at i:10657665 original size:55 final size:55
Alignment explanation
Indices: 10657606--10657910 Score: 452
Period size: 55 Copynumber: 5.6 Consensus size: 55
10657596 AATACCCTTT
* *
10657606 TTTTTC-ATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTA
1 TTTTTCTA-CATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
* * * * *
10657661 TTTTTCTACATTTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTA
1 TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
* * * *
10657716 TTTTTCTACATCTAACACCC-ATTTTTTCATTAAATCTCATTTATTACAACTTTA
1 TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
* *
10657770 TTTTTCTACATCTAACACCTTTTTTTTTCATTCAATCCCATTTATTTCAATTTTA
1 TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
*
10657825 TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTTAATTTTA
1 TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
*
10657880 TTTTTCTACATCTAATACCCTTTTTTTTCAT
1 TTTTTCTACATCTAACACCCTTTTTTTTCAT
10657911 CATCTAATAC
Statistics
Matches: 229, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
54 52 0.23
55 176 0.77
56 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.54
Consensus pattern (55 bp):
TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
Found at i:10657773 original size:109 final size:110
Alignment explanation
Indices: 10657602--10657910 Score: 453
Period size: 109 Copynumber: 2.8 Consensus size: 110
10657592 ATCTAATACC
* *
10657602 CTTT-TTTTTC-ATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTT
1 CTTTATTTTTCTA-CATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTT
* * *
10657665 TCTACATTTAACACCCATTTTTTTCATTAAATCTCATTTATTACAA
65 TCTACATCTAACACCCTTTTTTTTCATTAAATCCCATTTATTACAA
* * * *
10657711 CTTTATTTTTCTACATCTAACACCC-ATTTTTTCATTAAATCTCATTTATTACAACTTTATTTTT
1 CTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTT
* * *
10657775 CTACATCTAACACCTTTTTTTTTCATTCAATCCCATTTATTTCAA
66 CTACATCTAACACCCTTTTTTTTCATTAAATCCCATTTATTACAA
* *
10657820 TTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTTAATTTTATTTTT
1 CTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTT
*
10657885 CTACATCTAATACCCTTTTTTTTCAT
66 CTACATCTAACACCCTTTTTTTTCAT
10657911 CATCTAATAC
Statistics
Matches: 177, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
109 101 0.57
110 75 0.42
111 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (110 bp):
CTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTT
CTACATCTAACACCCTTTTTTTTCATTAAATCCCATTTATTACAA
Found at i:10657796 original size:164 final size:163
Alignment explanation
Indices: 10657602--10657906 Score: 477
Period size: 164 Copynumber: 1.9 Consensus size: 163
10657592 ATCTAATACC
* *
10657602 CTTTTTTTTCATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTTC
1 CTTTTTTTTCATCATCTAACACCCTTTTTTTTCATTCAATCCAATTTATTTCAATTTTATTTTTC
*
10657667 TACATTTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAAC
66 TACATCTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAAC
10657732 ACCCATTTTTTCATTAAATCTCATTTATTACAA
131 ACCCATTTTTTCATTAAATCTCATTTATTACAA
* *
10657765 CTTTATTTTTC-TACATCTAACACCTTTTTTTTTCATTCAATCCCATTTATTTCAATTTTATTTT
1 CTTT-TTTTTCAT-CATCTAACACCCTTTTTTTTCATTCAATCCAATTTATTTCAATTTTATTTT
* * ** *
10657829 TCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTTAATTTTATTTTTCTACATCTA
64 TCTACATCTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTA
* *
10657894 ATACCCTTTTTTT
129 ACACCCATTTTTT
10657907 TCATCATCTA
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
163 5 0.04
164 123 0.96
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (163 bp):
CTTTTTTTTCATCATCTAACACCCTTTTTTTTCATTCAATCCAATTTATTTCAATTTTATTTTTC
TACATCTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAAC
ACCCATTTTTTCATTAAATCTCATTTATTACAA
Found at i:10657797 original size:188 final size:188
Alignment explanation
Indices: 10657438--10657800 Score: 566
Period size: 188 Copynumber: 1.9 Consensus size: 188
10657428 TCTGAGACTT
* **
10657438 TTTTTTTTCATTCAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTTTCA
1 TTTTTTTTCATTCAATCTAATTTATTACAACTTTATTTTTCTACATCTAACACCCATTTTTTTCA
* * * * *
10657503 TTCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCA
66 TTAAATCCCATTTATTACAACTTTATTTTTCTACATCTAACACCCTATTTTTTCATTAAATCTCA
** * *
10657568 TTTATTTTAATTTTATTTTTCTACATCTAATACCCTTTTTTTTCATCATCTAATACCC
131 TTTATTACAACTTTATTTTTCTACATCTAACACCCTTTTTTTTCATCATCTAATACCC
* * *
10657626 TTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTTCTACATTTAACACCCATTTTTTTCA
1 TTTTTTTTCATTCAATCTAATTTATTACAACTTTATTTTTCTACATCTAACACCCATTTTTTTCA
*
10657691 TTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCC-ATTTTTTCATTAAATCTCA
66 TTAAATCCCATTTATTACAACTTTATTTTTCTACATCTAACACCCTATTTTTTCATTAAATCTCA
*
10657755 TTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTTTCAT
131 TTTATTACAACTTTATTTTTCTACATCTAACACCCTTTTTTTTCAT
10657801 TCAATCCCAT
Statistics
Matches: 158, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
187 58 0.37
188 100 0.63
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (188 bp):
TTTTTTTTCATTCAATCTAATTTATTACAACTTTATTTTTCTACATCTAACACCCATTTTTTTCA
TTAAATCCCATTTATTACAACTTTATTTTTCTACATCTAACACCCTATTTTTTCATTAAATCTCA
TTTATTACAACTTTATTTTTCTACATCTAACACCCTTTTTTTTCATCATCTAATACCC
Found at i:10657907 original size:78 final size:78
Alignment explanation
Indices: 10657825--10657988 Score: 258
Period size: 78 Copynumber: 2.1 Consensus size: 78
10657815 TTCAATTTTA
* *
10657825 TTTTTC-TACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTTAATTTTATTTTTCTAC
1 TTTTTCAT-CATCTAACACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTTCTAC
* *
10657889 ATCTAATACCCTTT
65 ATCTAACACCCATT
*
10657903 TTTTTCATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTTCTACA
1 TTTTTCATCATCTAACACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTTCTACA
*
10657968 TTTAACACCCATT
66 TCTAACACCCATT
10657981 TTTTTCAT
1 TTTTTCAT
10657989 TAAATCTCAT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
78 78 0.99
79 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (78 bp):
TTTTTCATCATCTAACACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTTCTACA
TCTAACACCCATT
Found at i:10657940 original size:25 final size:23
Alignment explanation
Indices: 10657880--10657943 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
10657870 TTTAATTTTA
10657880 TTTTTC-TACATCTAATACCCTTT
1 TTTTTCAT-CATCTAATACCCTTT
10657903 TTTTTCATCATCTAATACCCTTT
1 TTTTTCATCATCTAATACCCTTT
10657926 TTTTTCATTCAATCTAAT
1 TTTTTCA-TC-ATCTAAT
10657944 TTATTTCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
23 28 0.74
24 3 0.08
25 7 0.18
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTTCATCATCTAATACCCTTT
Found at i:10657962 original size:55 final size:55
Alignment explanation
Indices: 10657903--10658094 Score: 271
Period size: 55 Copynumber: 3.5 Consensus size: 55
10657893 AATACCCTTT
* *
10657903 TTTTTC-ATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTA
1 TTTTTCTA-CATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
* * * * *
10657958 TTTTTCTACATTTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTA
1 TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
10658013 TTTTTCTACATCTAACA-CCTATTTTTTTCATTCAATCTCATTTATTTCAATTTTA
1 TTTTTCTACATCTAACACCCT-TTTTTTTCATTCAATCTCATTTATTTCAATTTTA
* *
10658068 TTTTTTTACATGTAACACCCTTTTTTT
1 TTTTTCTACATCTAACACCCTTTTTTT
10658095 GGTTTTTTAG
Statistics
Matches: 120, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
54 2 0.02
55 114 0.95
56 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.01, T:0.55
Consensus pattern (55 bp):
TTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCATTTATTTCAATTTTA
Found at i:10657966 original size:188 final size:187
Alignment explanation
Indices: 10657711--10658094 Score: 565
Period size: 188 Copynumber: 2.0 Consensus size: 187
10657701 TTTATTACAA
*
10657711 CTTTATTTTTCTACATCTAACACCCATTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTC
1 CTTT-TTTTTCTACATCTAACACCCATTTTTTCATTAAATCTAATTTATTACAACTTTATTTTTC
** * * *
10657776 TACATCTAACACCTTTTTTTTTCATTCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAAC
65 TACATCTAACACCCATTTTTTTCATTAAATCCCATTTATTACAACTTTATTTTTCTACATCTAAC
* *
10657841 ACCCT-TTTTTTTCATTCAATCTCATTTATTTTAATTTTATTTTTCTACATCTAATACC
130 A-CCTATTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAACACC
* * * * *
10657899 CTTTTTTTTC-ATCATCTAATACCCTTTTTTTTCATTCAATCTAATTTATTTCAATTTTATTTTT
1 CTTTTTTTTCTA-CATCTAACACCC-ATTTTTTCATTAAATCTAATTTATTACAACTTTATTTTT
* *
10657963 CTACATTTAACACCCATTTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAA
64 CTACATCTAACACCCATTTTTTTCATTAAATCCCATTTATTACAACTTTATTTTTCTACATCTAA
* *
10658028 CACCTATTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTTTACATGTAACACC
129 CACCTATTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAACACC
10658087 CTTTTTTT
1 CTTTTTTT
10658095 GGTTTTTTAG
Statistics
Matches: 176, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
186 1 0.01
187 20 0.11
188 155 0.88
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (187 bp):
CTTTTTTTTCTACATCTAACACCCATTTTTTCATTAAATCTAATTTATTACAACTTTATTTTTCT
ACATCTAACACCCATTTTTTTCATTAAATCCCATTTATTACAACTTTATTTTTCTACATCTAACA
CCTATTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTCTACATCTAACACC
Found at i:10657974 original size:297 final size:298
Alignment explanation
Indices: 10657439--10658094 Score: 1242
Period size: 297 Copynumber: 2.2 Consensus size: 298
10657429 CTGAGACTTT
10657439 TTTTTTTCATTCAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTTTCAT
1 TTTTTTTCATTCAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTTTCAT
10657504 TCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCAT
66 TCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCAT
10657569 TTATTTTAATTTTATTTTTCTACATCTAATACCCTTTTTTTTCATCATCTAATACCCTTTTTTTT
131 TTATTTTAATTTTATTTTTCTACATCTAATACCCTTTTTTTTCATCATCTAATACCCTTTTTTTT
10657634 CATTCAATCTAATTTATTTCAATTTTATTTTTCTACATTTAACACCCATTTTTTTCATTAAATCT
196 CATTCAATCTAATTTATTTCAATTTTATTTTTCTACATTTAACACCCATTTTTTTCATTAAATCT
10657699 CATTTATTACAACTTTATTTTTCTACATCTAACACCCA
261 CATTTATTACAACTTTATTTTTCTACATCTAACACCCA
*
10657737 -TTTTTTCATTAAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTTTCAT
1 TTTTTTTCATTCAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTTTCAT
10657801 TCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCAT
66 TCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCAT
10657866 TTATTTTAATTTTATTTTTCTACATCTAATACCCTTTTTTTTCATCATCTAATACCCTTTTTTTT
131 TTATTTTAATTTTATTTTTCTACATCTAATACCCTTTTTTTTCATCATCTAATACCCTTTTTTTT
10657931 CATTCAATCTAATTTATTTCAATTTTATTTTTCTACATTTAACACCCATTTTTTTCATTAAATCT
196 CATTCAATCTAATTTATTTCAATTTTATTTTTCTACATTTAACACCCATTTTTTTCATTAAATCT
*
10657996 CATTTATTACAACTTTATTTTTCTACATCTAACACCTA
261 CATTTATTACAACTTTATTTTTCTACATCTAACACCCA
* * * * *
10658034 TTTTTTTCATTCAATCTCATTTATTTCAATTTTATTTTTTTACATGTAACACCCTTTTTTT
1 TTTTTTTCATTCAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTT
10658095 GGTTTTTTAG
Statistics
Matches: 349, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
297 295 0.85
298 54 0.15
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.54
Consensus pattern (298 bp):
TTTTTTTCATTCAATCTCATTTATTACAACTTTATTTTTCTACATCTAACACCTTTTTTTTTCAT
TCAATCCCATTTATTTCAATTTTATTTTTCTACATCTAACACCCTTTTTTTTCATTCAATCTCAT
TTATTTTAATTTTATTTTTCTACATCTAATACCCTTTTTTTTCATCATCTAATACCCTTTTTTTT
CATTCAATCTAATTTATTTCAATTTTATTTTTCTACATTTAACACCCATTTTTTTCATTAAATCT
CATTTATTACAACTTTATTTTTCTACATCTAACACCCA
Found at i:10658408 original size:26 final size:26
Alignment explanation
Indices: 10658325--10658408 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
10658315 TTCATTTTAT
* * *
10658325 ATTTAAATTTTATATTTCCAATGGAA
1 ATTTAAATTTTCTATTTTCAATGCAA
* * ** *
10658351 ATTTAATTTTTTTCTCA-TTTCATTTTAT
1 ATTTAA--ATTTTCT-ATTTTCAATGCAA
10658379 ATTTAAATTTTCTATTTTCAATGCAA
1 ATTTAAATTTTCTATTTTCAATGCAA
10658405 ATTT
1 ATTT
10658409 GTTTTTACAA
Statistics
Matches: 42, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
25 1 0.02
26 23 0.55
28 17 0.40
29 1 0.02
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.56
Consensus pattern (26 bp):
ATTTAAATTTTCTATTTTCAATGCAA
Found at i:10663248 original size:213 final size:212
Alignment explanation
Indices: 10662437--10663655 Score: 983
Period size: 213 Copynumber: 5.6 Consensus size: 212
10662427 TTGATAAATT
* * * **** * *
10662437 TGGTGTCGACCATTGGCAGGCTACCACCAAAATTTTTTTTTAAAATTTTTTTCGTATACTGGTGC
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAAAATTTTT-GAATTTTTTT-GTATACTGGTAC
** ***** *
10662502 CGGTCAATGACAGCCCAAAATGTAAAAAAAAAAATTTACATAAAGGTAGTGCCGGTCATTGGCAG
64 CGACCAATGACAGCCCAAAATGT----AATTTTTTTTACATAAAGGTAGTGCCGGCCATTGGCAG
* *
10662567 GCCACCACCAAAAAACTAATTTTTTTTGAATTTTTTCT-TGTACTGGTGCCGACC-ATGACAGCC
125 GCCACCA-C--AAAA-T--TTTTTTTTGAATTTTTT-TGTATACTGGTGCCGGCCAATGACAGCC
*
10662630 CAAAATGTAAAAAAAAAAATTTACATACAGG
183 CAAAATGT-AAAAAAAAAATTTACATAAAGG
* * * *
10662661 TGGTGCCGGTCATTGGTAGGCCACCACCAAAAAAATATTTTTTTTAAAATTTTTTCGTATACTGG
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAAA-A---TTTTT-GAATTTTTTTGTATACTGG
* * * * ****** * *
10662726 TGCC-AGCTAATGACAACCCAAAATGCAAAAAAAAAATTACATAAAGGTAGTGCCGGCCATTAGT
61 TACCGA-CCAATGACAGCCCAAAATG--TAATTTTTTTTACATAAAGGTAGTGCCGGCCATTGGC
* * * * *
10662790 AGGCCATCACCAAAATTTTTTTTTGAATTTTTTCGTATACTGGTGTCGGCCAATGACAACGCAAA
123 AGGCCACCA-CAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGCCGGCCAATGACAGCCCAAA
*
10662855 ATGT--AAAAAAAA-TTAAATAAAGG
187 ATGTAAAAAAAAAATTTACATAAAGG
* ** ** * * *
10662878 TGGCGCCGGCCATAT-GCAGGCCACCATTAAAATAATTTTTTTGAATTTTTTCGTCTACTGATAC
1 TGGTGCCGGCCAT-TGGCAGGCCACCACCAAAA-AAAATTTTTGAATTTTTTTGTATACTGGTAC
* * * *
10662942 CGACTAATAACAGCCCAAAATGTAATTTTTTTTACATAAAGGTAGTGCTGGCCATTAGCAGGCCA
64 CGACCAATGACAGCCCAAAATGTAATTTTTTTTACATAAAGGTAGTGCCGGCCATTGGCAGGCCA
* *** *** * *
10663007 CTACCAAAAAAAATTCGCTGAA-TTTTTTGTATATTGGTGCCTGCCAATGACAGCCCAAAATGTA
129 CCA-C-AAAATTTTTTTTTGAATTTTTTTGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTA
10663071 AAAAAAAAATTTACATAAAGG
192 AAAAAAAAATTTACATAAAGG
* * * *
10663092 TGGTGCCGGCCATTGGCAGGCCACCATCAAAAAAAAATTTTGAATTTTTTTTTATATTGGTACCG
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAAAATTTTTGAATTTTTTTGTATACTGGTACCG
* *
10663157 ACCAATGACAGCCCAAAATGTAAATTTTTTTTTACACAAAGGTGGTGCCGGCCATTGGCAGGCCA
66 ACCAATGACAGCCCAAAATGT-AA-TTTTTTTTACATAAAGGTAGTGCCGGCCATTGGCAGGCCA
* * **
10663222 CCAC-AAATTTTTTTTTTAATTTTTTTGTACACTGGTGCTTGCCAATGACAGCCCAAAATG-AAA
129 CCACAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAA
***** *
10663285 AACTTTTTTTACATAAAGA
194 AAAAAAATTTACATAAAGG
* * ***** **
10663304 TGATGCCGGCCATTGGTAGGCCACCACCAAATTTTTTTTTTTTGAA-TTTTTTGTATACTGGTGT
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAA--AAAAATTTTTGAATTTTTTTGTATACTGGTAC
* * * **
10663368 CGGCCAATGACAGCCTAAAATGTAATTTTTTTTTACATAAAGGTGGTGTTGGCCATTGGCAGGCC
64 CGACCAATGACAGCCCAAAATGTAA-TTTTTTTTACATAAAGGTAGTGCCGGCCATTGGCAGGCC
* *
10663433 ACCACAAAAAATTTTATTTTAAATTTTTTTGTATACTGGTGCCGGCCAATGACAGCCCAAAATGT
128 ACCAC--AAAATTTTTTTTTGAATTTTTTTGTATACTGGTGCCGGCCAATGACAGCCCAAAATGT
****
10663498 ---AAATTTTTTTACATAAAGG
191 AAAAAAAAAATTTACATAAAGG
* * * ** ** *
10663517 TGATGCCGGCCATTGACAGGTCATTACCAAAAAAAAATTTTATTTTATTTTTTTATATACTGGTA
1 TGGTGCCGGCCATTGGCAGGCCACCACC-AAAAAAAA-TTT-TTGAATTTTTTTGTATACTGGTA
* * * * *
10663582 CTGACCAATGACAGCCCAAAATGT-ATTTTTTTTACATAAAGGTGGTGCCGACTATTGGCAGGTC
63 CCGACCAATGACAGCCCAAAATGTAATTTTTTTTACATAAAGGTAGTGCCGGCCATTGGCAGGCC
10663646 ACCACCAAAA
128 ACCA-CAAAA
10663656 ATAAATCTCA
Statistics
Matches: 818, Mismatches: 146, Indels: 74
0.79 0.14 0.07
Matches are distributed among these distances:
211 72 0.09
212 110 0.13
213 242 0.30
214 62 0.08
215 124 0.15
217 34 0.04
218 11 0.01
220 30 0.04
221 15 0.02
222 1 0.00
223 4 0.00
224 27 0.03
225 42 0.05
227 29 0.04
228 15 0.02
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (212 bp):
TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAAAATTTTTGAATTTTTTTGTATACTGGTACCG
ACCAATGACAGCCCAAAATGTAATTTTTTTTACATAAAGGTAGTGCCGGCCATTGGCAGGCCACC
ACAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGCCGGCCAATGACAGCCCAAAATGTAAAAA
AAAAATTTACATAAAGG
Found at i:10663548 original size:107 final size:107
Alignment explanation
Indices: 10662437--10663656 Score: 990
Period size: 107 Copynumber: 11.3 Consensus size: 107
10662427 TTGATAAATT
* * * *
10662437 TGGTGTCGACCATTGGCAGGCTACCACC--AAAATTTTTTTTTAAAATTTTTTTCGTATACTGGT
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTT-GAATTTTTTT-GTATACTGGT
* ****
10662500 GCCGGTCAATGACAGCCCAAAATGTAAAAAAAAAAATTTACATAAAGG
64 GCCGGCCAATGACAGCCCAAAATGT----AAATTTTTTTACATAAAGG
* * *
10662548 TAGTGCCGGTCATTGGCAGGCCACCACCAAAAAACTAATTTTTTTTGAATTTTTTCT-TGTACTG
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAA-T--TTTTTTTTGAATTTTTT-TGTATACTG
* **** *
10662612 GTGCCGACC-ATGACAGCCCAAAATGTAAAAAAAAAAATTTACATACAGG
62 GTGCCGGCCAATGACAGCCCAAAATGT----AAATTTTTTTACATAAAGG
* * * *
10662661 TGGTGCCGGTCATTGGTAGGCCACCACCAAAAAAATATTTTTTTTAAAATTTTTTCGTATACTGG
1 TGGTGCCGGCCATTGGCAGGCCACCACC-AAAAAAT-TTTTTTTT-GAATTTTTTTGTATACTGG
* * * * *****
10662726 TGCCAGCTAATGACAACCCAAAATGCAAAAAAAAAATTACATAAAGG
63 TGCCGGCCAATGACAGCCCAAAATG--TAAATTTTTTTACATAAAGG
* * * * * *
10662773 TAGTGCCGGCCATTAGTAGGCCATCACC--AAAATTTTTTTTTGAATTTTTTCGTATACTGGTGT
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGC
* * ***** *
10662836 CGGCCAATGACAACGCAAAATGTAAAAAAAATTAAATAAAGG
66 CGGCCAATGACAGCCCAAAATGTAAATTTTTTTACATAAAGG
* ** * * *
10662878 TGGCGCCGGCCATAT-GCAGGCCACCATTAAAATAA--TTTTTTTGAATTTTTTCGTCTACTGAT
1 TGGTGCCGGCCAT-TGGCAGGCCACCACCAAAA-AATTTTTTTTTGAATTTTTTTGTATACTGGT
* * * * *
10662940 ACCGACTAATAACAGCCCAAAATGTAATTTTTTTTACATAAAGG
64 GCCGGCCAATGACAGCCCAAAATGTAAATTTTTTTACATAAAGG
* * * * ** *** *
10662984 TAGTGCTGGCCATTAGCAGGCCACTACCAAAAAA-AATTCGCTGAA-TTTTTTGTATATTGGTGC
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGC
* ****
10663047 CTGCCAATGACAGCCCAAAATGTAAAAAAAAAATTTACATAAAGG
66 CGGCCAATGACAGCCCAAAATGT---AAATTTTTTTACATAAAGG
* *** * * *
10663092 TGGTGCCGGCCATTGGCAGGCCACCATCAAAAAA--AAATTTTGAATTTTTTTTTATATTGGTAC
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGC
* *
10663155 CGACCAATGACAGCCCAAAATGTAAATTTTTTTTTACACAAAGG
66 CGGCCAATGACAGCCCAAAATGTAAA--TTTTTTTACATAAAGG
* *
10663199 TGGTGCCGGCCATTGGCAGGCCACCA-C---AAATTTTTTTTTTAATTTTTTTGTACACTGGTGC
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGC
** * *
10663260 TTGCCAATGACAGCCCAAAATGAAAAACTTTTTTTACATAAAGA
66 CGGCCAATGACAGCCCAAAATG-TAAA-TTTTTTTACATAAAGG
* * *** *
10663304 TGATGCCGGCCATTGGTAGGCCACCACCAAATTTTTTTTTTTTGAA-TTTTTTGTATACTGGTGT
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGC
* *
10663368 CGGCCAATGACAGCCTAAAATGTAATTTTTTTTTACATAAAGG
66 CGGCCAATGACAGCCCAAAATGTAA-ATTTTTTTACATAAAGG
** * *
10663411 TGGTGTTGGCCATTGGCAGGCCACCA-CAAAAAATTTTATTTTAAATTTTTTTGTATACTGGTGC
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGC
10663475 CGGCCAATGACAGCCCAAAATGTAAATTTTTTTACATAAAGG
66 CGGCCAATGACAGCCCAAAATGTAAATTTTTTTACATAAAGG
* * * ** * *
10663517 TGATGCCGGCCATTGACAGGTCATTACCAAAAAAAAATTTTATTTT--ATTTTTTTATATACTGG
1 TGGTGCCGGCCATTGGCAGG-C--CACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGG
* * * *
10663580 TACTGACCAATGACAGCCCAAAATGT-ATTTTTTTTACATAAAGG
63 TGCCGGCCAATGACAGCCCAAAATGTAAATTTTTTTACATAAAGG
* * *
10663624 TGGTGCCGACTATTGGCAGGTCACCACCAAAAA
1 TGGTGCCGGCCATTGGCAGGCCACCACCAAAAA
10663657 TAAATCTCAT
Statistics
Matches: 914, Mismatches: 158, Indels: 81
0.79 0.14 0.07
Matches are distributed among these distances:
103 3 0.00
104 9 0.01
105 154 0.17
106 137 0.15
107 197 0.22
108 164 0.18
109 20 0.02
110 15 0.02
111 23 0.03
112 50 0.05
113 90 0.10
114 35 0.04
115 8 0.01
116 9 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (107 bp):
TGGTGCCGGCCATTGGCAGGCCACCACCAAAAAATTTTTTTTTGAATTTTTTTGTATACTGGTGC
CGGCCAATGACAGCCCAAAATGTAAATTTTTTTACATAAAGG
Found at i:10665385 original size:14 final size:15
Alignment explanation
Indices: 10665346--10665387 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10665336 TTTTAACATA
*
10665346 ATTATTATTAAATAT
1 ATTATAATTAAATAT
10665361 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
10665375 A-TATAATTTAATA
1 ATTATAATTAAATA
10665388 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:10665437 original size:61 final size:61
Alignment explanation
Indices: 10665372--10665679 Score: 212
Period size: 61 Copynumber: 5.1 Consensus size: 61
10665362 TTATAATTAA
10665372 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * *
10665433 AATATATGATACT-ATAAAA-T-ATAATTTAA-C-ATAATTATTAT-TAAATATA-TTATATTTA
1 AATATATAAT-TTAATAAAATTCTTAA--TAATCAAT-ATTCTTATATGAATTTACTCA-AATCA
*
10665491 A
61 T
* * *
10665492 AATATATAATTTAATAAAATCCTAAATAATCAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * ** * * * * *
10665553 AATATATGATACT-ATAAAA--GATAATTTAA-C-ATAATTATTAT-TAAATATA-TTATAATTA
1 AATATATAAT-TTAATAAAATTCTTAA--TAATCAAT-ATTCTTATATGAATTTACTCA-AATCA
*
10665611 A
61 T
*
10665612 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
10665673 AATATAT
1 AATATAT
10665680 GATACTNNNN
Statistics
Matches: 179, Mismatches: 44, Indels: 48
0.66 0.16 0.18
Matches are distributed among these distances:
58 6 0.03
59 64 0.36
60 32 0.18
61 71 0.40
62 6 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:10665482 original size:120 final size:120
Alignment explanation
Indices: 10665337--10665685 Score: 644
Period size: 120 Copynumber: 2.9 Consensus size: 120
10665327 TTAATCATAT
10665337 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
10665402 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAA
* * *
10665457 TTTAACATAATTATTATTAAATATATTATATTTAAAATATATAATTTAATAAAATCCTAAATAAT
1 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
10665522 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAGATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAA
10665577 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
10665642 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
10665686 NNNNNNNNNN
Statistics
Matches: 219, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 219 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAA
Found at i:10665616 original size:16 final size:16
Alignment explanation
Indices: 10665573--10665618 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
10665563 ACTATAAAAG
*
10665573 ATAATTTAACATA-ATT
1 ATAA-TTAAAATATATT
*
10665589 ATTATT-AAATATATT
1 ATAATTAAAATATATT
10665604 ATAATTAAAATATAT
1 ATAATTAAAATATAT
10665619 AATTTAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 4 0.16
15 10 0.40
16 11 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATTAAAATATATT
Found at i:10665625 original size:14 final size:15
Alignment explanation
Indices: 10665573--10665627 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
10665563 ACTATAAAAG
10665573 ATAATTTAACATA-ATT
1 ATAA-TTAA-ATATATT
*
10665589 ATTATTAAATATATT
1 ATAATTAAATATATT
10665604 ATAATTAAA-ATA-T
1 ATAATTAAATATATT
*
10665617 ATAATTTAATA
1 ATAATTAAATA
10665628 AAATTCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 9 0.26
14 7 0.21
15 15 0.44
16 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATTAAATATATT
Found at i:10667834 original size:15 final size:15
Alignment explanation
Indices: 10667810--10667864 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
10667800 CTTAAGATGA
*
10667810 TTAATTTTTTTAAAT
1 TTAATATTTTTAAAT
*
10667825 TTAATA-TTTTATTAT
1 TTAATATTTTTA-AAT
*
10667840 TTAATATTTTT-ATT
1 TTAATATTTTTAAAT
10667854 CTTAATATTTT
1 -TTAATATTTT
10667865 AATAATTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.18
15 23 0.70
16 4 0.12
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TTAATATTTTTAAAT
Found at i:10667862 original size:9 final size:8
Alignment explanation
Indices: 10667824--10667868 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
10667814 TTTTTTTAAA
10667824 TTTAATAT
1 TTTAATAT
*
10667832 TTTATTA-
1 TTTAATAT
10667839 TTTAATAT
1 TTTAATAT
10667847 TTT--TAT
1 TTTAATAT
10667853 TCTTAATAT
1 T-TTAATAT
10667862 TTTAATA
1 TTTAATA
10667869 ATTCAACTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
6 4 0.13
7 8 0.26
8 15 0.48
9 4 0.13
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTAATAT
Found at i:10668145 original size:12 final size:11
Alignment explanation
Indices: 10668132--10668174 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
10668122 TTGGCCTATC
10668132 CTTTTTTCTTT
1 CTTTTTTCTTT
*
10668143 CCTTTTTCTTT
1 CTTTTTTCTTT
*
10668154 -TTTCTTCTTT
1 CTTTTTTCTTT
10668164 CTTTTTCTCTT
1 CTTTTT-TCTT
10668175 ATTTTTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 8 0.31
11 14 0.54
12 4 0.15
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
CTTTTTTCTTT
Found at i:10668163 original size:21 final size:19
Alignment explanation
Indices: 10668133--10668171 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 19
10668123 TGGCCTATCC
10668133 TTTTTTCTTTCCTTTTTCTT
1 TTTTTTCTTT-CTTTTTCTT
10668153 TTTTCTTCTTTCTTTTTCT
1 TTTT-TTCTTTCTTTTTCT
10668172 CTTATTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTCTTTCTTTTTCTT
Found at i:10668203 original size:9 final size:9
Alignment explanation
Indices: 10668191--10668223 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
10668181 GATTTTTCAA
10668191 TTTTTTGAT
1 TTTTTTGAT
10668200 TTTTTTGAT
1 TTTTTTGAT
*
10668209 TTTTTTTAT
1 TTTTTTGAT
10668218 TTTTTT
1 TTTTTT
10668224 CTTTTGAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.85
Consensus pattern (9 bp):
TTTTTTGAT
Found at i:10668204 original size:18 final size:18
Alignment explanation
Indices: 10668183--10668224 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
10668173 TTATTTTTGA
10668183 TTTTTCAATTTTTTGATT
1 TTTTTCAATTTTTTGATT
* * *
10668201 TTTTTGATTTTTTTTATT
1 TTTTTCAATTTTTTGATT
10668219 TTTTTC
1 TTTTTC
10668225 TTTTGAGTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTTCAATTTTTTGATT
Found at i:10672098 original size:6 final size:6
Alignment explanation
Indices: 10672062--10672096 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
10672052 AGAAAAAGAA
* *
10672062 AAAATC AAAATC AAAATC AAGATC AAAATG AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT
10672097 GAGAAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.66, C:0.11, G:0.06, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:10672166 original size:13 final size:13
Alignment explanation
Indices: 10672150--10672174 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10672140 AAATCAGAAT
10672150 GAAAAAGGAAAAA
1 GAAAAAGGAAAAA
10672163 GAAAAAGGAAAA
1 GAAAAAGGAAAA
10672175 TGAGAGGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
GAAAAAGGAAAAA
Found at i:10674479 original size:130 final size:130
Alignment explanation
Indices: 10674232--10675431 Score: 2195
Period size: 130 Copynumber: 9.2 Consensus size: 130
10674222 ACGAATTATA
* * * * * * * *
10674232 CAGGTCTTATCCC-CCTGAACTTGCAGTGGAACAGATCGACGATGGCGAATCTCATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
* * * *
10674296 TAAGGAAGTAGATTTAAGCCACGAGTTATTTCTCCCTGAGGTTGCAGTGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10674361 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
10674426 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10674491 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
10674556 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10674621 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
10674686 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10674751 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
10674816 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10674881 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
10674946 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10675011 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
10675076 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10675141 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
* * * *
10675206 TAAGGAAGCAGATTTAAGCCACGAGTCCTTTCTCCCTGAGGTTGCAGTGGAGCAGGCTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
10675271 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
* * ** *
10675336 TAAGGAAGCAGATTTAAGCCACGAGTCATTTCTCCTTGATGTTGCAGAGGAGCAGACTAAGTAAG
66 TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
*
10675401 CAGGTCTTATCCCGACTGAAGCTGCAGTGGG
1 CAGGTCTTATCCCGACTGAAGTTGCAGTGGG
10675432 GTAGACTAAA
Statistics
Matches: 1048, Mismatches: 22, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
129 13 0.01
130 1035 0.99
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (130 bp):
CAGGTCTTATCCCGACTGAAGTTGCAGTGGGACAGATCAAAGACGGTGAATCTTATCTTCAAGTG
TAAGGAAGCAAATTTAAGCCACGAGTCATTTCTCCCTGGGGTTGCAGTGGAGCAGACTAAGTAAG
Found at i:10675545 original size:44 final size:44
Alignment explanation
Indices: 10675449--10675744 Score: 198
Period size: 44 Copynumber: 6.8 Consensus size: 44
10675439 AAATAAGCCA
* * **
10675449 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCGATA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG-TAATAG
* * * *
10675493 ATCCTATCTCCTTGAAGTTGTAGTGGAGCGGATTAAAGTAATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGTAATAG
* * * * *
10675537 ATCTTATCTCTCTGAAGTTGCAGTAGAGTGG-TTCGCA-T--CAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATT-GAAGTAATAG
* * * * * *
10675578 GTCTTGTCTCCCTGAGGTTGCAGTGGAGCAGACT-AAGTAAGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGTAA-TAG
* * * *
10675622 GTCTTATC-CCGACTGAAGTTGCAGTGGGGCAGG-CTGAAG-AAGTAA
1 ATCTTATCTCC--CTGAAGTTGCAGTGGAGC-GGATTGAAGTAA-TAG
* * *
10675667 ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAATTCAATA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGT-AATAG
* *
10675711 ATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATT
10675745 AAAAAGCTAC
Statistics
Matches: 195, Mismatches: 42, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
40 1 0.01
41 27 0.14
42 1 0.01
43 9 0.05
44 118 0.61
45 31 0.16
46 8 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGTAATAG
Found at i:10675999 original size:5 final size:5
Alignment explanation
Indices: 10675991--10676023 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
10675981 TTATCAAACC
10675991 AAATA AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAA
10676024 ACCATAGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:10676529 original size:18 final size:18
Alignment explanation
Indices: 10676508--10676542 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10676498 TATTTTTTCT
10676508 TTCTTTTC-GATTTCTTCC
1 TTCTTTTCTG-TTTCTTCC
10676526 TTCTTTTCTGTTTCTTC
1 TTCTTTTCTGTTTCTTC
10676543 AACCTTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.03, C:0.26, G:0.06, T:0.66
Consensus pattern (18 bp):
TTCTTTTCTGTTTCTTCC
Found at i:10682425 original size:41 final size:39
Alignment explanation
Indices: 10682378--10682491 Score: 124
Period size: 41 Copynumber: 2.9 Consensus size: 39
10682368 TTTTACTTTG
*
10682378 AGTCGATGAGACACTGGGTGTCAATTTATTACTTTGGATTA
1 AGTCGATGAGACACTGGGTGTCAA-TTATTACTTCGG-TTA
* * * *
10682419 ATTCGATGAGGCACTGGGTGCCAA-T-TTACTTCGGTTT
1 AGTCGATGAGACACTGGGTGTCAATTATTACTTCGGTTA
* *
10682456 AGCCGATAAGACACTGGGTGTCAAATTATTACTTCG
1 AGTCGATGAGACACTGGGTGTC-AATTATTACTTCG
10682492 AATTATCTGA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
37 19 0.32
38 10 0.17
39 2 0.03
40 8 0.13
41 21 0.35
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (39 bp):
AGTCGATGAGACACTGGGTGTCAATTATTACTTCGGTTA
Found at i:10683015 original size:13 final size:14
Alignment explanation
Indices: 10682997--10683026 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
10682987 AGTAGTCCCG
10682997 TTTTTATTT-TTTA
1 TTTTTATTTATTTA
10683010 TTTTTATTTATTTA
1 TTTTTATTTATTTA
10683024 TTT
1 TTT
10683027 ACATTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTATTTATTTA
Found at i:10683948 original size:3 final size:3
Alignment explanation
Indices: 10683942--10684001 Score: 57
Period size: 3 Copynumber: 20.0 Consensus size: 3
10683932 TCACATTTTA
* * ** * *
10683942 TAT TAT TAT TAT TAT TAT TAC TAT CAT TGC TAT TAT TAT TAG CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
10683990 TAT TAT TTT TAT
1 TAT TAT TAT TAT
10684002 ATATCAATTT
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:10685337 original size:20 final size:20
Alignment explanation
Indices: 10685312--10685362 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
10685302 GTGAAAAGCT
10685312 ATTTGAATAGCA-AGTATGAG
1 ATTTGAATAGCAGAG-ATGAG
10685332 ATTTGAAATAGCAGGAGATGAG
1 ATTTG-AATAGCA-GAGATGAG
*
10685354 AATTGAATA
1 ATTTGAATA
10685363 TGTTATAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 5 0.19
21 11 0.41
22 9 0.33
23 2 0.07
ACGTcount: A:0.43, C:0.04, G:0.25, T:0.27
Consensus pattern (20 bp):
ATTTGAATAGCAGAGATGAG
Found at i:10687322 original size:21 final size:21
Alignment explanation
Indices: 10687281--10687335 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
10687271 TATTTTCATC
* *
10687281 TATTTTATATTCATATTTAAAT
1 TATTATATATT-ATATATAAAT
10687303 TATTATATATTATATATAAAT
1 TATTATATATTATATATAAAT
10687324 T-TTGATATATTA
1 TATT-ATATATTA
10687336 GTTATTTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 18 0.60
22 10 0.33
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TATTATATATTATATATAAAT
Found at i:10687378 original size:5 final size:5
Alignment explanation
Indices: 10687370--10687396 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
10687360 ATATATATTT
10687370 TTGTG TTGTG TTGTG TTGTG TTGTG TT
1 TTGTG TTGTG TTGTG TTGTG TTGTG TT
10687397 ATATAATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.37, T:0.63
Consensus pattern (5 bp):
TTGTG
Found at i:10688621 original size:27 final size:27
Alignment explanation
Indices: 10688580--10688682 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
10688570 TATCTTAGTC
* *
10688580 GTGCCAAGGTGATTGGCGGCACCAAAG
1 GTGCCAAAGTGATTGGCGGCACCAATG
*
10688607 GTGCCAAAGTTATTGGCGGCACCAATG
1 GTGCCAAAGTGATTGGCGGCACCAATG
* *
10688634 GTGCCAAGGAGATTGGCGGCACCAATG
1 GTGCCAAAGTGATTGGCGGCACCAATG
* * *
10688661 ATGCCATACTGATTGGCGGCAC
1 GTGCCAAAGTGATTGGCGGCAC
10688683 TACTCGTGTT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.25, C:0.23, G:0.33, T:0.18
Consensus pattern (27 bp):
GTGCCAAAGTGATTGGCGGCACCAATG
Found at i:10688666 original size:54 final size:54
Alignment explanation
Indices: 10688580--10688682 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
10688570 TATCTTAGTC
* * * *
10688580 GTGCCAAGGTGATTGGCGGCACCAAAGGTGCCAAAGTTATTGGCGGCACCAATG
1 GTGCCAAGGAGATTGGCGGCACCAAAGATGCCAAACTGATTGGCGGCACCAATG
* *
10688634 GTGCCAAGGAGATTGGCGGCACCAATGATGCCATACTGATTGGCGGCAC
1 GTGCCAAGGAGATTGGCGGCACCAAAGATGCCAAACTGATTGGCGGCAC
10688683 TACTCGTGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.25, C:0.23, G:0.33, T:0.18
Consensus pattern (54 bp):
GTGCCAAGGAGATTGGCGGCACCAAAGATGCCAAACTGATTGGCGGCACCAATG
Found at i:10688847 original size:19 final size:21
Alignment explanation
Indices: 10688809--10688847 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
10688799 AATAATTGAT
*
10688809 TATATTGTTGTTATTGTTTTG
1 TATATTGTTGTTATTATTTTG
10688830 TATATT-TTG-TATTATTTT
1 TATATTGTTGTTATTATTTT
10688848 TTTGTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.18, C:0.00, G:0.13, T:0.69
Consensus pattern (21 bp):
TATATTGTTGTTATTATTTTG
Found at i:10688911 original size:3 final size:3
Alignment explanation
Indices: 10688903--10688949 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
10688893 TTTTAGTTAG
* *
10688903 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAG TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10688950 AGATGTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:10689761 original size:18 final size:18
Alignment explanation
Indices: 10689738--10689775 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10689728 GGTTGGTGGT
*
10689738 GAAGAAGACGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
10689756 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
10689774 GA
1 GA
10689776 TCATTGGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:10691238 original size:22 final size:22
Alignment explanation
Indices: 10691213--10691300 Score: 67
Period size: 22 Copynumber: 4.0 Consensus size: 22
10691203 CCTTTCCTCT
10691213 TCTTCTTCTTTCTTTTTTTTTC
1 TCTTCTTCTTTCTTTTTTTTTC
* *
10691235 TCTTC-TCATTTCCTTTTCTTTC
1 TCTTCTTC-TTTCTTTTTTTTTC
* *
10691257 -CTTCTT-TTTC-TTTCTTTCC
1 TCTTCTTCTTTCTTTTTTTTTC
*
10691276 TCTCCTTCCTTTCTTTCTTTCTTTC
1 TCTTCTT-CTTTCTTT-TTT-TTTC
10691301 CCTCTCCTTC
Statistics
Matches: 50, Mismatches: 8, Indels: 13
0.70 0.11 0.18
Matches are distributed among these distances:
19 6 0.12
20 9 0.18
21 6 0.12
22 22 0.44
23 2 0.04
24 2 0.04
25 3 0.06
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (22 bp):
TCTTCTTCTTTCTTTTTTTTTC
Found at i:10691262 original size:36 final size:38
Alignment explanation
Indices: 10691192--10691271 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 38
10691182 GCATCAGGCA
* *
10691192 TTTTT-TCTTCTCCTTTCCTCTTCTTCTTCTTTCTTTT
1 TTTTTCTCTTCTCATTTCCTCTTCTTCTTCCTTCTTTT
*
10691229 TTTTTCTCTTCTCATTTCCTTTTC-T-TTCCTTCTTTT
1 TTTTTCTCTTCTCATTTCCTCTTCTTCTTCCTTCTTTT
*
10691265 TCTTTCT
1 TTTTTCT
10691272 TTCCTCTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 16 0.42
37 6 0.16
38 16 0.42
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (38 bp):
TTTTTCTCTTCTCATTTCCTCTTCTTCTTCCTTCTTTT
Found at i:10691284 original size:27 final size:27
Alignment explanation
Indices: 10691254--10691310 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
10691244 TTCCTTTTCT
*
10691254 TTCCTTCTTTTTCTTTCTTT-CCTCTCC
1 TTCCTT-TCTTTCTTTCTTTCCCTCTCC
10691281 TTCCTTTCTTTCTTTCTTTCCCTCTCC
1 TTCCTTTCTTTCTTTCTTTCCCTCTCC
10691308 TTC
1 TTC
10691311 TCCCCCCCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 12 0.43
27 16 0.57
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (27 bp):
TTCCTTTCTTTCTTTCTTTCCCTCTCC
Found at i:10691288 original size:32 final size:31
Alignment explanation
Indices: 10691193--10691295 Score: 91
Period size: 32 Copynumber: 3.1 Consensus size: 31
10691183 CATCAGGCAT
*
10691193 TTTTTCTTCTCCTTTCCTCTTCTTC-TTCTTTC
1 TTTTTCTT-T-CTTTCCTCTCCTTCTTTCTTTC
* * *
10691225 TTTTTTTTTCTCTTCTCATTTCCTTTTCTTTCCTTC
1 TTTTTCTTTCT-TTC-C-TCTCC--TTCTTTCTTTC
10691261 TTTTTCTTTCTTTCCTCTCCTTCCTTTCTTTC
1 TTTTTCTTTCTTTCCTCTCCTT-CTTTCTTTC
10691293 TTT
1 TTT
10691296 CTTTCCCTCT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
30 2 0.04
31 6 0.11
32 19 0.33
33 7 0.12
34 1 0.02
35 6 0.11
36 16 0.28
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (31 bp):
TTTTTCTTTCTTTCCTCTCCTTCTTTCTTTC
Found at i:10691473 original size:26 final size:27
Alignment explanation
Indices: 10691444--10691506 Score: 110
Period size: 26 Copynumber: 2.4 Consensus size: 27
10691434 TGTTTTGGGT
10691444 ATATTTTGGTAAATAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAATTTATA
*
10691470 ATATTTTGTTAAATAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAATTTATA
10691497 ATATTTTGGT
1 ATATTTTGGT
10691507 TATTTTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 20 0.59
27 14 0.41
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAATTTATA
Found at i:10692392 original size:15 final size:16
Alignment explanation
Indices: 10692374--10692404 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10692364 TTTTTTTCAA
10692374 ATTTAATAT-TTTATT
1 ATTTAATATCTTTATT
10692389 ATTTAATATCTTTATT
1 ATTTAATATCTTTATT
10692405 CGTAATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTAATATCTTTATT
Found at i:10702300 original size:30 final size:30
Alignment explanation
Indices: 10702259--10702342 Score: 89
Period size: 31 Copynumber: 2.8 Consensus size: 30
10702249 CACTAAATAG
*
10702259 ATTATATTTTTATAAATTTTAAATAATTAA
1 ATTAAATTTTTATAAATTTTAAATAATTAA
* *
10702289 ATTAAATTTTTAT-TATGTTTATAATCATTAA
1 ATTAAATTTTTATAAAT-TTTA-AATAATTAA
* * *
10702320 TTTAAAATTTTATAAATTATAAA
1 ATTAAATTTTTATAAATTTTAAA
10702343 AAAAAAAGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
29 2 0.05
30 18 0.41
31 22 0.50
32 2 0.05
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (30 bp):
ATTAAATTTTTATAAATTTTAAATAATTAA
Found at i:10703446 original size:20 final size:20
Alignment explanation
Indices: 10703387--10703449 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
10703377 TAGACACCTT
10703387 ATTTTTATCATTATAGAATA
1 ATTTTTATCATTATAGAATA
* * *
10703407 ATTGATTAT--TTAAATTAATA
1 ATT-TTTATCATTATA-GAATA
10703427 ATTTTTATCATTATAGAATA
1 ATTTTTATCATTATAGAATA
10703447 ATT
1 ATT
10703450 CTTAATTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
19 8 0.24
20 17 0.52
21 8 0.24
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTTTTATCATTATAGAATA
Found at i:10705941 original size:31 final size:32
Alignment explanation
Indices: 10705882--10705946 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
10705872 GGCAAATTAC
10705882 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
10705914 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
10705945 AA
1 AA
10705947 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:10707055 original size:15 final size:16
Alignment explanation
Indices: 10707030--10707063 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
10707020 TAAAATTCAA
10707030 TAAACTTTAACTAAAT
1 TAAACTTTAACTAAAT
10707046 TAAA-TTTAACTAAAT
1 TAAACTTTAACTAAAT
10707061 TAA
1 TAA
10707064 CTATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAACTTTAACTAAAT
Found at i:10707825 original size:70 final size:70
Alignment explanation
Indices: 10707709--10707855 Score: 199
Period size: 70 Copynumber: 2.1 Consensus size: 70
10707699 AAAAAATATT
* *
10707709 TTAAAATTAGTTATACTTAAATTTTTTAAATATATTTAAAATTTTAATATA-TTAAGTATATTAA
1 TTAAAATTAGTTATACTCAAATTTTTTAAACATATTTAAAATTTTAATATATTTAAGTATATTAA
10707773 AAA-C
66 AAATC
* * * *
10707777 TTAAAATTGGTTATACTCAACATTTTCTTTAACATATTTAAAATTTTAATATATTTAAGTTTTTT
1 TTAAAATTAGTTATACTCAA-ATTTT-TTAAACATATTTAAAATTTTAATATATTTAAGTATATT
*
10707842 AAAAATT
64 AAAAATC
10707849 TTAAAAT
1 TTAAAAT
10707856 ATTAAATATA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
68 18 0.26
69 5 0.07
70 24 0.35
71 14 0.21
72 7 0.10
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (70 bp):
TTAAAATTAGTTATACTCAAATTTTTTAAACATATTTAAAATTTTAATATATTTAAGTATATTAA
AAATC
Found at i:10707830 original size:17 final size:16
Alignment explanation
Indices: 10707804--10707895 Score: 78
Period size: 17 Copynumber: 5.4 Consensus size: 16
10707794 CAACATTTTC
10707804 TTTAACATATTTAAAAT
1 TTTAA-ATATTTAAAAT
**
10707821 TTTAATATATTTAAGTTT
1 TTTAA-ATATTTAA-AAT
*
10707839 TTTAAAAATTTTAAAAT
1 TTTAAATA-TTTAAAAT
*
10707856 ATTAAATATATTAAAAT
1 TTTAAATAT-TTAAAAT
10707873 TTGT-AATATATTAAAAT
1 TT-TAAATAT-TTAAAAT
10707890 TTTAAA
1 TTTAAA
10707896 ATTGGTTATA
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
16 2 0.03
17 47 0.77
18 12 0.20
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (16 bp):
TTTAAATATTTAAAAT
Found at i:10707833 original size:9 final size:9
Alignment explanation
Indices: 10707804--10707897 Score: 58
Period size: 9 Copynumber: 10.9 Consensus size: 9
10707794 CAACATTTTC
*
10707804 TTTAACATA
1 TTTAAAATA
10707813 TTTAAAAT-
1 TTTAAAATA
*
10707821 TTTAATATA
1 TTTAAAATA
** *
10707830 TTTAAGTTT
1 TTTAAAATA
10707839 TTTAAAA-A
1 TTTAAAATA
10707847 TTTTAAAATA
1 -TTTAAAATA
10707857 -TT-AAATA
1 TTTAAAATA
10707864 TATTAAAAT-
1 T-TTAAAATA
*
10707873 TTGTAATATA
1 TT-TAAAATA
10707883 -TTAAAAT-
1 TTTAAAATA
10707890 TTTAAAAT
1 TTTAAAAT
10707898 TGGTTATACT
Statistics
Matches: 66, Mismatches: 10, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
7 5 0.08
8 22 0.33
9 34 0.52
10 5 0.08
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (9 bp):
TTTAAAATA
Found at i:10707833 original size:26 final size:24
Alignment explanation
Indices: 10707805--10707898 Score: 91
Period size: 26 Copynumber: 3.7 Consensus size: 24
10707795 AACATTTTCT
10707805 TTAACATATTTAAAATTTTAATATA
1 TTAA-ATATTTAAAATTTTAATATA
* * *
10707830 TTTAAGTTTTTTAAAAATTTTAAAATA
1 -TTAA-ATATTT-AAAATTTTAATATA
10707857 TTAAATATATTAAAATTTGTAATATA
1 TTAAATAT-TTAAAATTT-TAATATA
10707883 TTAAA-ATTTTAAAATT
1 TTAAATA-TTTAAAATT
10707899 GGTTATACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
25 18 0.32
26 26 0.46
27 13 0.23
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (24 bp):
TTAAATATTTAAAATTTTAATATA
Found at i:10707860 original size:8 final size:8
Alignment explanation
Indices: 10707843--10707897 Score: 56
Period size: 8 Copynumber: 6.6 Consensus size: 8
10707833 AAGTTTTTTA
*
10707843 AAAATTTT
1 AAAATATT
10707851 AAAATATT
1 AAAATATT
10707859 AAATATATT
1 AAA-ATATT
*
10707868 AAAATTTGT
1 AAAATAT-T
*
10707877 AATATATT
1 AAAATATT
*
10707885 AAAATTTT
1 AAAATATT
10707893 AAAAT
1 AAAAT
10707898 TGGTTATACT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 25 0.64
9 14 0.36
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
AAAATATT
Found at i:10708016 original size:21 final size:20
Alignment explanation
Indices: 10707985--10708055 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 20
10707975 TGTCTTTACC
10707985 TATTAAAAATTTATATTAAGTA
1 TATT-AAAATTTATATTAA-TA
10708007 TATTAAAATTT-TA--AATA
1 TATTAAAATTTATATTAATA
**
10708024 TATTAAAAAATATATTAAATA
1 TATTAAAATTTATATT-AATA
10708045 TATTAAAATTT
1 TATTAAAATTT
10708056 TAAAATTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
17 11 0.27
18 4 0.10
20 2 0.05
21 20 0.49
22 4 0.10
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (20 bp):
TATTAAAATTTATATTAATA
Found at i:10708025 original size:17 final size:17
Alignment explanation
Indices: 10708000--10708059 Score: 75
Period size: 17 Copynumber: 3.3 Consensus size: 17
10707990 AAAATTTATA
*
10708000 TTAAGTATATTAAAATT
1 TTAAATATATTAAAATT
10708017 TTAAATATATTAAAAAATAT
1 TTAAATATATT--AAAAT-T
10708037 ATTAAATATATTAAAATT
1 -TTAAATATATTAAAATT
10708055 TTAAA
1 TTAAA
10708060 ATTAATTATA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
17 15 0.39
18 1 0.03
19 10 0.26
20 1 0.03
21 11 0.29
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAAATATATTAAAATT
Found at i:10708029 original size:9 final size:9
Alignment explanation
Indices: 10707996--10708051 Score: 60
Period size: 9 Copynumber: 6.0 Consensus size: 9
10707986 ATTAAAAATT
*
10707996 TATATTAAG
1 TATATTAAA
10708005 TATATTAAA
1 TATATTAAA
*
10708014 -ATTTTAAA
1 TATATTAAA
10708022 TATATTAAAAAA
1 TATATT---AAA
10708034 TATATTAAA
1 TATATTAAA
10708043 TATATTAAA
1 TATATTAAA
10708052 ATTTTAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 7 0.17
9 24 0.60
12 9 0.22
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (9 bp):
TATATTAAA
Found at i:10708047 original size:38 final size:39
Alignment explanation
Indices: 10707985--10708059 Score: 125
Period size: 38 Copynumber: 1.9 Consensus size: 39
10707975 TGTCTTTACC
* *
10707985 TATTAAAAATTTATATTAAGTATATTAAAATTTTAAATA
1 TATTAAAAATATATATTAAATATATTAAAATTTTAAATA
10708024 TATTAAAAA-ATATATTAAATATATTAAAATTTTAAA
1 TATTAAAAATATATATTAAATATATTAAAATTTTAAA
10708060 ATTAATTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 25 0.74
39 9 0.26
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (39 bp):
TATTAAAAATATATATTAAATATATTAAAATTTTAAATA
Found at i:10708092 original size:18 final size:19
Alignment explanation
Indices: 10708061--10708098 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
10708051 AATTTTAAAA
*
10708061 TTAATTATACTTAACATTT
1 TTAATTATACTTAAAATTT
*
10708080 TTAA-TATATTTAAAATTT
1 TTAATTATACTTAAAATTT
10708098 T
1 T
10708099 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
TTAATTATACTTAAAATTT
Found at i:10708308 original size:97 final size:95
Alignment explanation
Indices: 10708137--10708367 Score: 311
Period size: 97 Copynumber: 2.4 Consensus size: 95
10708127 GCAATTGGAA
* *
10708137 ACAGGTGGCGCTGATTTATTTGGCTCCAACAGAAAATGGAAATTTTTTGTAAAGTCTCCCCATTT
1 ACAGGTGGCGC-AATTTATTT-GCTCCACCAGAAAATGGAAATTTTTTGTAAAGTCTCCCCATTT
*
10708202 TTCAAAAATTATAGTATTTCCTTGATATTTAT
64 TTCAAAAATTATAGTATTTCCTTAATATTTAT
* *
10708234 ACATGTGGCGTCAATTTATTTCGCTCCACCAGAAAATGGAAAATTTTTTTTAAAGTCTCCCCA-T
1 ACAGGTGGCG-CAATTTATTT-GCTCCACCAGAAAATGG-AAATTTTTTGTAAAGTCTCCCCATT
* *
10708298 TTTCAGAAATTATAGTATTTCTTTAATATTTAT
63 TTTCAAAAATTATAGTATTTCCTTAATATTTAT
* *
10708331 ACAGGTGGCGCCATTCTATATGACTCCACCAGAAAAT
1 ACAGGTGGCGCAATT-TATTTG-CTCCACCAGAAAAT
10708368 CGATTTTTTT
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
96 5 0.04
97 91 0.76
98 23 0.19
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (95 bp):
ACAGGTGGCGCAATTTATTTGCTCCACCAGAAAATGGAAATTTTTTGTAAAGTCTCCCCATTTTT
CAAAAATTATAGTATTTCCTTAATATTTAT
Found at i:10712152 original size:4 final size:4
Alignment explanation
Indices: 10712143--10712183 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
10712133 CATATTAAAA
10712143 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
10712184 ATAGGACTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:10720173 original size:31 final size:31
Alignment explanation
Indices: 10720122--10720180 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
10720112 TAAAATGGTT
10720122 AAATTTTAATTTAATATTTATA-TTTCACTC
1 AAATTTTAATTTAATATTTATACTTTCACTC
*
10720152 AAATTTTAATTTTAATCTTTATACTTTCA
1 AAATTTTAA-TTTAATATTTATACTTTCA
10720181 TTTAACATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 9 0.35
31 12 0.46
32 5 0.19
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (31 bp):
AAATTTTAATTTAATATTTATACTTTCACTC
Found at i:10720881 original size:9 final size:9
Alignment explanation
Indices: 10720864--10720907 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
10720854 AGACAATATT
*
10720864 TTTTCATAA
1 TTTTAATAA
10720873 TTTTAATAA
1 TTTTAATAA
10720882 TTTTGAAATAA
1 TTTT--AATAA
*
10720893 TCTTAATAA
1 TTTTAATAA
10720902 TTTTAA
1 TTTTAA
10720908 AATCATTTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 22 0.73
11 8 0.27
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (9 bp):
TTTTAATAA
Found at i:10720892 original size:20 final size:20
Alignment explanation
Indices: 10720869--10720915 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
10720859 ATATTTTTTC
*
10720869 ATAATTTTAATAATTTTGAA
1 ATAATTTTAATAATTTTAAA
*
10720889 ATAATCTTAATAATTTTAAA
1 ATAATTTTAATAATTTTAAA
*
10720909 ATCATTT
1 ATAATTT
10720916 GCTGAGATGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (20 bp):
ATAATTTTAATAATTTTAAA
Found at i:10726362 original size:25 final size:24
Alignment explanation
Indices: 10726316--10726362 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
10726306 CAGGGTAACA
*
10726316 ATTTCTCACATTTCATTTATAAAC
1 ATTTCTCACATTTCATTCATAAAC
10726340 ATTTCTC-CATTTCAAATTCATAA
1 ATTTCTCACATTTC--ATTCATAA
10726363 TCACAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
ATTTCTCACATTTCATTCATAAAC
Found at i:10728666 original size:25 final size:25
Alignment explanation
Indices: 10728632--10728685 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
10728622 CTACTCGGTC
10728632 AAAGCGTTCATCTTAGACGAATAAA
1 AAAGCGTTCATCTTAGACGAATAAA
*
10728657 AAAGTGTTCATCTTAGACGAATAAA
1 AAAGCGTTCATCTTAGACGAATAAA
10728682 AAAG
1 AAAG
10728686 GTACAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (25 bp):
AAAGCGTTCATCTTAGACGAATAAA
Found at i:10729001 original size:17 final size:15
Alignment explanation
Indices: 10728973--10729038 Score: 53
Period size: 15 Copynumber: 4.1 Consensus size: 15
10728963 ACTTTTTTTT
10728973 TAAAAAATATAAAAA
1 TAAAAAATATAAAAA
10728988 TAAAAAATACATAAAAA
1 TAAAAAAT--ATAAAAA
*
10729005 TTCAAAAAAGTA-AAATCA
1 -T-AAAAAA-TATAAA-AA
*
10729023 TAAAAAATATTAAAA
1 TAAAAAATATAAAAA
10729038 T
1 T
10729039 TTTTATATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
15 12 0.29
16 8 0.20
17 11 0.27
18 3 0.07
19 6 0.15
20 1 0.02
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.23
Consensus pattern (15 bp):
TAAAAAATATAAAAA
Found at i:10729011 original size:25 final size:24
Alignment explanation
Indices: 10728975--10729037 Score: 58
Period size: 25 Copynumber: 2.5 Consensus size: 24
10728965 TTTTTTTTTA
10728975 AAAAATATAAAAATA-AAAAATACAT
1 AAAAATATAAAAA-AGAAAAAT-CAT
*
10729000 AAAAAT-TCAAAAAAGTAAAATCAT
1 AAAAATAT-AAAAAAGAAAAATCAT
*
10729024 AAAAAATATTAAAA
1 -AAAAATATAAAAA
10729038 TTTTTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 5 0.16
25 26 0.81
26 1 0.03
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.21
Consensus pattern (24 bp):
AAAAATATAAAAAAGAAAAATCAT
Found at i:10736567 original size:21 final size:22
Alignment explanation
Indices: 10736534--10736579 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
10736524 GTAGAACAAC
*
10736534 ATATAAATTTCTTAAAA-TAAA
1 ATATAAATATCTTAAAATTAAA
*
10736555 ATATATATATCTTAAAATTAAA
1 ATATAAATATCTTAAAATTAAA
10736577 ATA
1 ATA
10736580 CAATTATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATAAATATCTTAAAATTAAA
Found at i:10739036 original size:116 final size:119
Alignment explanation
Indices: 10738838--10739065 Score: 331
Period size: 116 Copynumber: 1.9 Consensus size: 119
10738828 GCAACTTTTT
10738838 TTGGTGGCCATATATTTTTCTTTTTCATACACCATTTGTATATGACGTAAGATCCCAAATTCCCA
1 TTGGTGGCCATATATTTTTCTTTTTCATACACCATTTGTATATGACGTAAGATCCCAAATTCCCA
*
10738903 AAAGAATGAAAGGGATTT-CC-TAA-TTCTAATCTTTAGATTAATTATAACCTCC
66 AAAGAATAAAAGGGATTTCCCATAAGTT-TAATCTTTAGATTAATTATAACCTCC
** * *
10738955 TTGGTGGCCATAT-TCTTTTCTTTTTCATACACCATTT-TATATGATTTAAGATCCCACATTCCT
1 TTGGTGGCCATATAT-TTTTCTTTTTCATACACCATTTGTATATGACGTAAGATCCCAAATTCCC
* *
10739018 AAAAGAATAAAAGTGATTTCCCAATAAGTTTAATCTTTATATTAATTA
65 AAAAGAATAAAAGGGATTTCCC-ATAAGTTTAATCTTTAGATTAATTA
10739066 GAGTTTCCCT
Statistics
Matches: 99, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
116 40 0.40
117 37 0.37
119 20 0.20
120 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.40
Consensus pattern (119 bp):
TTGGTGGCCATATATTTTTCTTTTTCATACACCATTTGTATATGACGTAAGATCCCAAATTCCCA
AAAGAATAAAAGGGATTTCCCATAAGTTTAATCTTTAGATTAATTATAACCTCC
Found at i:10745808 original size:22 final size:19
Alignment explanation
Indices: 10745758--10745814 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
10745748 AAAAAACAAT
*
10745758 ATTTTT-ATTTTT-TAATA
1 ATTTTTAATTTTTAAAATA
10745775 ATTTTTAATTTTTAAAATA
1 ATTTTTAATTTTTAAAATA
*
10745794 ATTTTATAATGTTTTTAAATA
1 ATTTT-TAAT-TTTTAAAATA
10745815 TTAATTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.18
18 6 0.18
19 9 0.26
20 4 0.12
21 9 0.26
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTTTTAATTTTTAAAATA
Found at i:10751828 original size:28 final size:27
Alignment explanation
Indices: 10751786--10751839 Score: 99
Period size: 28 Copynumber: 2.0 Consensus size: 27
10751776 CATTTGAATC
10751786 AATATAATATATATAATACTAAAAAAT
1 AATATAATATATATAATACTAAAAAAT
10751813 AATATATATATATATAATACTAAAAAA
1 AATATA-ATATATATAATACTAAAAAA
10751840 GAACACTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (27 bp):
AATATAATATATATAATACTAAAAAAT
Found at i:10754624 original size:56 final size:56
Alignment explanation
Indices: 10754563--10754669 Score: 142
Period size: 56 Copynumber: 1.9 Consensus size: 56
10754553 GCAAATGGAA
* * *
10754563 AACACGCGCATAGCATGCGCGTAATTTACAATTTTCAAGGAACTCCTCAAATAAAC
1 AACACGCGCATAGAATGCGCGTAATTTACAATATACAAGGAACTCCTCAAATAAAC
* * * * *
10754619 AACACGTGCATAGAATGGGCGTGATTTATAATATACAAGGAACTCTTCAAA
1 AACACGCGCATAGAATGCGCGTAATTTACAATATACAAGGAACTCCTCAAA
10754670 AGGTTAACAC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 43 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (56 bp):
AACACGCGCATAGAATGCGCGTAATTTACAATATACAAGGAACTCCTCAAATAAAC
Found at i:10766057 original size:32 final size:32
Alignment explanation
Indices: 10766015--10766076 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
10766005 ATATTTTGAC
10766015 TTATACAATTTTT-GATAATTTAATAATTTCTA
1 TTATACAATTTTTAGATAATTT-ATAATTTCTA
* * *
10766047 TTATATAATTTTTAGATTATTTGTAATTTC
1 TTATACAATTTTTAGATAATTTATAATTTC
10766077 AGATCTTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (32 bp):
TTATACAATTTTTAGATAATTTATAATTTCTA
Found at i:10769736 original size:32 final size:32
Alignment explanation
Indices: 10769694--10769755 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
10769684 ATATTTTGAC
10769694 TTATACAATTTTT-GATAATTTAATAATTTCTA
1 TTATACAATTTTTAGATAATTT-ATAATTTCTA
* * *
10769726 TTATATAATTTTTAGATTATTTGTAATTTC
1 TTATACAATTTTTAGATAATTTATAATTTC
10769756 AGATCTTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (32 bp):
TTATACAATTTTTAGATAATTTATAATTTCTA
Found at i:10772788 original size:21 final size:21
Alignment explanation
Indices: 10772762--10772802 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10772752 ATCTGCTCAA
* *
10772762 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
10772783 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
10772803 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:10780014 original size:21 final size:21
Alignment explanation
Indices: 10779990--10780040 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
10779980 CCATATTGTA
10779990 ACCCATCTGACCACCCATTTG
1 ACCCATCTGACCACCCATTTG
*
10780011 ACCCATCTGACGACCCATTTG
1 ACCCATCTGACCACCCATTTG
*
10780032 GCCCATCTG
1 ACCCATCTG
10780041 CCCCATATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.41, G:0.14, T:0.24
Consensus pattern (21 bp):
ACCCATCTGACCACCCATTTG
Found at i:10780674 original size:12 final size:11
Alignment explanation
Indices: 10780657--10780722 Score: 60
Period size: 12 Copynumber: 5.5 Consensus size: 11
10780647 AAATTCCCCT
*
10780657 TCATCATCATC
1 TCATCATCAAC
10780668 ATCATCATCGAAC
1 -TCATCATC-AAC
*
10780681 TCATCATCAAAT
1 TCATCATC-AAC
10780693 TCATCATCGAAC
1 TCATCATC-AAC
*
10780705 TCATCACCAAAC
1 TCATCATC-AAC
10780717 TCATCA
1 TCATCA
10780723 AAATCACAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
12 44 0.96
13 2 0.04
ACGTcount: A:0.36, C:0.33, G:0.03, T:0.27
Consensus pattern (11 bp):
TCATCATCAAC
Found at i:10780689 original size:24 final size:24
Alignment explanation
Indices: 10780669--10780722 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
10780659 ATCATCATCA
10780669 TCATCATCGAACTCATCATCAAAT
1 TCATCATCGAACTCATCATCAAAT
* *
10780693 TCATCATCGAACTCATCACCAAAC
1 TCATCATCGAACTCATCATCAAAT
10780717 TCATCA
1 TCATCA
10780723 AAATCACAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.37, C:0.33, G:0.04, T:0.26
Consensus pattern (24 bp):
TCATCATCGAACTCATCATCAAAT
Found at i:10783999 original size:19 final size:19
Alignment explanation
Indices: 10783942--10784001 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
10783932 TGATTACTTG
* *
10783942 AATTTAATAACTCATGA-T
1 AATTTAATAACTTATTATT
* * *
10783960 AAATTAATTAATTTAAT-TT
1 AATTTAA-TAACTTATTATT
10783979 AATTTAATAACTTATTATT
1 AATTTAATAACTTATTATT
10783998 AATT
1 AATT
10784002 GAACTTGTTA
Statistics
Matches: 31, Mismatches: 8, Indels: 5
0.70 0.18 0.11
Matches are distributed among these distances:
18 13 0.42
19 18 0.58
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (19 bp):
AATTTAATAACTTATTATT
Found at i:10785022 original size:31 final size:30
Alignment explanation
Indices: 10784966--10785023 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
10784956 TAGCAAAGTT
**
10784966 AACAATAAAACAAAAGTTATACAATATCCA
1 AACAATAAAACAAAAGGAATACAATATCCA
10784996 AACAATAATAACAAAAGAGAAT-CAATAT
1 AACAATAA-AACAAAAG-GAATACAATAT
10785024 AATAACGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.33
31 14 0.58
32 2 0.08
ACGTcount: A:0.62, C:0.14, G:0.05, T:0.19
Consensus pattern (30 bp):
AACAATAAAACAAAAGGAATACAATATCCA
Found at i:10786503 original size:26 final size:26
Alignment explanation
Indices: 10786474--10786523 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
10786464 AAAAATTGTG
*
10786474 AATTATTATTTAAAGAAATTATTTAA
1 AATTAATATTTAAAGAAATTATTTAA
* * *
10786500 AATTAATGTTTAAGGAACTTATTT
1 AATTAATATTTAAAGAAATTATTT
10786524 TAAGTACAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (26 bp):
AATTAATATTTAAAGAAATTATTTAA
Found at i:10790335 original size:131 final size:131
Alignment explanation
Indices: 10790101--10790362 Score: 524
Period size: 131 Copynumber: 2.0 Consensus size: 131
10790091 TTAACACTTA
10790101 AGCATCACGTATATTAGTTAAATATCAATCTACTTACTAGCAGACCTATTTTAGGTATTTGAAAT
1 AGCATCACGTATATTAGTTAAATATCAATCTACTTACTAGCAGACCTATTTTAGGTATTTGAAAT
10790166 GAGTACACATATAGCAGCTTTCATGTAAAAGGGGAAAAATCATAGAAGAAACTATAGGGCAATAT
66 GAGTACACATATAGCAGCTTTCATGTAAAAGGGGAAAAATCATAGAAGAAACTATAGGGCAATAT
10790231 C
131 C
10790232 AGCATCACGTATATTAGTTAAATATCAATCTACTTACTAGCAGACCTATTTTAGGTATTTGAAAT
1 AGCATCACGTATATTAGTTAAATATCAATCTACTTACTAGCAGACCTATTTTAGGTATTTGAAAT
10790297 GAGTACACATATAGCAGCTTTCATGTAAAAGGGGAAAAATCATAGAAGAAACTATAGGGCAATAT
66 GAGTACACATATAGCAGCTTTCATGTAAAAGGGGAAAAATCATAGAAGAAACTATAGGGCAATAT
10790362 C
131 C
10790363 TAGGGTGAAA
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 131 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (131 bp):
AGCATCACGTATATTAGTTAAATATCAATCTACTTACTAGCAGACCTATTTTAGGTATTTGAAAT
GAGTACACATATAGCAGCTTTCATGTAAAAGGGGAAAAATCATAGAAGAAACTATAGGGCAATAT
C
Found at i:10790881 original size:15 final size:17
Alignment explanation
Indices: 10790861--10790895 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
10790851 TTTTCTTGAA
10790861 TTATTTTTAT-T-ATAT
1 TTATTTTTATGTAATAT
10790876 TTATTTTTATGTAATAT
1 TTATTTTTATGTAATAT
10790893 TTA
1 TTA
10790896 AAATTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 1 0.06
17 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TTATTTTTATGTAATAT
Found at i:10791269 original size:14 final size:14
Alignment explanation
Indices: 10791247--10791280 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10791237 AAATATTATT
*
10791247 CAAATATTGATATA
1 CAAAAATTGATATA
10791261 CAAAAATTGATATA
1 CAAAAATTGATATA
10791275 CAAAAA
1 CAAAAA
10791281 CTAGTACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (14 bp):
CAAAAATTGATATA
Found at i:10795677 original size:190 final size:190
Alignment explanation
Indices: 10795354--10795732 Score: 724
Period size: 190 Copynumber: 2.0 Consensus size: 190
10795344 ATTTAATTTT
10795354 TAAAATTAAAAGTTATTTTGGTATGATTTATGTTATCCTATTTTTTTCCATTTATTTTTCTTTTA
1 TAAAATTAAAAGTTATTTTGGTATGATTTATGTTATCCTATTTTTTTCCATTTATTTTTCTTTTA
*
10795419 ATATTTAGGTTAATTTTTACTACGGTACAGCAAATTAGAGATATAGGGTGGAAAGTAGCAGCGTT
66 ATATTTAGGTTAATTTTTACTACGGTACAGCAAATTAGAGATATAGGGTGGAAAGTAGCAACGTT
*
10795484 TATAAACAAAATGCCACTAGATTAAGGGTGAGTTTGGAT-GGACGGTGGGGTACAGTGTGC
131 TATAAACAAAATGCCACTAGATTAAGGGTGAGTTTGGATACG-CGGTGGGGTACAGTGTGC
10795544 TAAAATTAAAAGTTATTTTGGTATGATTTATGTTATCCTATTTTTTTCCATTTATTTTTCTTTTA
1 TAAAATTAAAAGTTATTTTGGTATGATTTATGTTATCCTATTTTTTTCCATTTATTTTTCTTTTA
10795609 ATATTTAGGTTAATTTTTACTACGGTACAGCAAATTAGAGATATAGGGTGGAAAGTAGCAACGTT
66 ATATTTAGGTTAATTTTTACTACGGTACAGCAAATTAGAGATATAGGGTGGAAAGTAGCAACGTT
10795674 TATAAACAAAATGCCACTAGATTAAGGGTGAGTTTGGATACGCGGTGGGGTACAGTGTG
131 TATAAACAAAATGCCACTAGATTAAGGGTGAGTTTGGATACGCGGTGGGGTACAGTGTG
10795733 TTTAGCTTAC
Statistics
Matches: 186, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
190 185 0.99
191 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (190 bp):
TAAAATTAAAAGTTATTTTGGTATGATTTATGTTATCCTATTTTTTTCCATTTATTTTTCTTTTA
ATATTTAGGTTAATTTTTACTACGGTACAGCAAATTAGAGATATAGGGTGGAAAGTAGCAACGTT
TATAAACAAAATGCCACTAGATTAAGGGTGAGTTTGGATACGCGGTGGGGTACAGTGTGC
Found at i:10810956 original size:20 final size:21
Alignment explanation
Indices: 10810917--10810957 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
10810907 AAATTTCAAG
*
10810917 TTTTTTATTTTTAATTAATAAT
1 TTTTTTATTTATAA-TAATAAT
10810939 TTTTTTATTTATAA-AATAA
1 TTTTTTATTTATAATAATAA
10810958 AATAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
22 13 0.72
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTTTATTTATAATAATAAT
Found at i:10813939 original size:27 final size:28
Alignment explanation
Indices: 10813904--10813976 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 28
10813894 TTTATAATTT
10813904 TTTAAAAAATATTTTA-TATAAAAA-ATA
1 TTTAAAAAAT-TTTTAGTATAAAAATATA
* *
10813931 TTTACAAAATTTTTAGTGTAAAAATATA
1 TTTAAAAAATTTTTAGTATAAAAATATA
10813959 TTTTAAAATTAATTTTTA
1 -TTTAAAA--AATTTTTA
10813977 AATTGGTGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 5 0.13
27 16 0.42
28 3 0.08
29 6 0.16
31 8 0.21
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (28 bp):
TTTAAAAAATTTTTAGTATAAAAATATA
Found at i:10816835 original size:7 final size:7
Alignment explanation
Indices: 10816825--10816858 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
10816815 CAAAAAGAAA
10816825 AAAAAAG
1 AAAAAAG
10816832 AAAAAAG
1 AAAAAAG
10816839 AAAAAAG
1 AAAAAAG
10816846 AAAAAAAG
1 -AAAAAAG
10816854 AAAAA
1 AAAAA
10816859 GATAGTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:10816835 original size:8 final size:8
Alignment explanation
Indices: 10816816--10816858 Score: 61
Period size: 8 Copynumber: 5.4 Consensus size: 8
10816806 CTCAAGTTGC
10816816 AAAAAGAA
1 AAAAAGAA
*
10816824 AAAAAAAGA
1 AAAAAGA-A
10816833 AAAAAG-A
1 AAAAAGAA
10816840 AAAAAGAA
1 AAAAAGAA
10816848 AAAAAGAA
1 AAAAAGAA
10816856 AAA
1 AAA
10816859 GATAGTTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 7 0.23
8 18 0.58
9 6 0.19
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:10816844 original size:14 final size:15
Alignment explanation
Indices: 10816825--10816858 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
10816815 CAAAAAGAAA
10816825 AAAAAAG-AAAAAAG
1 AAAAAAGAAAAAAAG
10816839 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
10816854 AAAAA
1 AAAAA
10816859 GATAGTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:10816859 original size:14 final size:14
Alignment explanation
Indices: 10816822--10816860 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
10816812 TTGCAAAAAG
10816822 AAAA-AAAAAG-AA
1 AAAAGAAAAAGAAA
10816834 AAAAGAAAAAAGAAA
1 AAAAG-AAAAAGAAA
10816849 AAAAGAAAAAGA
1 AAAAGAAAAAGA
10816861 TAGTTTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.17
14 13 0.54
15 7 0.29
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAGAAA
Found at i:10817714 original size:21 final size:21
Alignment explanation
Indices: 10817688--10817729 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
10817678 TGCTTCATAT
10817688 AAGTTTAATTCTTACTCTTTC
1 AAGTTTAATTCTTACTCTTTC
*
10817709 AAGTTTAATTCTTGCTCTTTC
1 AAGTTTAATTCTTACTCTTTC
10817730 CTTTAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.19, G:0.07, T:0.52
Consensus pattern (21 bp):
AAGTTTAATTCTTACTCTTTC
Found at i:10839864 original size:44 final size:44
Alignment explanation
Indices: 10839797--10839963 Score: 160
Period size: 44 Copynumber: 3.8 Consensus size: 44
10839787 GAAGAATTTC
* * *
10839797 AGATCTTATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCAG
1 AGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTGAAGCTAG
** *
10839841 AGATCTTATCTCTCTG-AGATTACAGCGGAGTAGATTGAAGCTAG
1 AGATCTTATCTCTCTGAAG-TTACAGTAGAGCAGATTGAAGCTAG
* * * ** *
10839885 TA-ATCCTATCTCTCTGAAGTTACAGTGGAGCGGATT-AAAATAA
1 -AGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTGAAGCTAG
* *
10839928 AGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGAT
1 A-GATCTTATCTCTCTGAAGTTACAGTAGAGCAGAT
10839964 CACATCAGAT
Statistics
Matches: 100, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
44 91 0.91
45 3 0.03
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (44 bp):
AGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTGAAGCTAG
Found at i:10852726 original size:27 final size:27
Alignment explanation
Indices: 10852658--10852727 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
10852648 ACGCAATGGG
* *
10852658 ATTGGCGGCACCAAAGGTGTCAAAGCC
1 ATTGGCGGCACCAATGGTGCCAAAGCC
10852685 ATTGGCGGCACCAATGGTGCCAATA-CC
1 ATTGGCGGCACCAATGGTGCCAA-AGCC
10852712 ATTGGCGGCACCAATG
1 ATTGGCGGCACCAATG
10852728 TTTATTAGGG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 39 0.98
28 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.17
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGCC
Found at i:10852779 original size:4 final size:4
Alignment explanation
Indices: 10852770--10852927 Score: 86
Period size: 4 Copynumber: 39.8 Consensus size: 4
10852760 GAAGGAGAGG
* * *
10852770 GAAA GAAA GAAA GAAA TGAGAG GGAA GAAA G-AA -AAA GAAG GAAA GAAAA
1 GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA
* *
10852819 GAAA -AGGA GAAGA GAAA AAAA GAAA GAAA GAAA G-AA G-AA GAAAA GGAAA
1 GAAA GA-AA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -GAAA
* *
10852868 GGAGAA GAAA -AAA GAAA GAAA GAAG GAAA G-AA -AAA GAAA G-GA GAAGA
1 -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA-A
10852915 GAAA -AAA -AAA GAA
1 GAAA GAAA GAAA GAA
10852928 GAAGAGGGAA
Statistics
Matches: 122, Mismatches: 14, Indels: 36
0.71 0.08 0.21
Matches are distributed among these distances:
3 26 0.21
4 66 0.54
5 26 0.21
6 4 0.03
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:10852815 original size:18 final size:18
Alignment explanation
Indices: 10852774--10852928 Score: 84
Period size: 18 Copynumber: 9.0 Consensus size: 18
10852764 GAGAGGGAAA
*
10852774 GAAAGAAAG-AAATGAGAG
1 GAAAGAAAGAAAAAGA-AG
*
10852792 GGAAGAAAGAAAAAGAAG
1 GAAAGAAAGAAAAAGAAG
*
10852810 GAAAG-AA-AAGAA-AAG
1 GAAAGAAAGAAAAAGAAG
10852825 G--AGAAGAGAAAAA-AA-
1 GAAAGAA-AGAAAAAGAAG
10852840 GAAAGAAAGAAAGAAGAAG
1 GAAAGAAAGAAA-AAGAAG
* * *
10852859 AAAAGGAAAGGAGAAGAA-
1 GAAA-GAAAGAAAAAGAAG
*
10852877 AAAAGAAAG--AAAGAAG
1 GAAAGAAAGAAAAAGAAG
*
10852893 GAAAGAAA-AAGAAAGGA-
1 GAAAGAAAGAA-AAAGAAG
*
10852910 GAAGAGAAAAAAAAAGAAG
1 GAA-AGAAAGAAAAAGAAG
10852929 AAGAGGGAAG
Statistics
Matches: 108, Mismatches: 12, Indels: 33
0.71 0.08 0.22
Matches are distributed among these distances:
13 2 0.02
14 1 0.01
15 11 0.10
16 22 0.20
17 16 0.15
18 35 0.32
19 15 0.14
20 6 0.06
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.01
Consensus pattern (18 bp):
GAAAGAAAGAAAAAGAAG
Found at i:10852860 original size:44 final size:44
Alignment explanation
Indices: 10852794--10852922 Score: 157
Period size: 44 Copynumber: 3.0 Consensus size: 44
10852784 AATGAGAGGG
10852794 AAGAAAG-AA-AAAGAAGGAAAGAAAAGAAAAGGAGAAGAGAAAAA
1 AAGAAAGAAAGAAAGAA-G-AAGAAAAGAAAAGGAGAAGAGAAAAA
*
10852838 AAGAAAGAAAGAAAGAAGAAGAAAAGGAAAGGAG-A-AG-AAAA
1 AAGAAAGAAAGAAAGAAGAAGAAAAGAAAAGGAGAAGAGAAAAA
*
10852879 AAGAAAGAAAG-AAGGA-AAGAAAA-AGAAAGGAGAAGAGAAAAA
1 AAGAAAGAAAGAAAGAAGAAGAAAAGA-AAAGGAGAAGAGAAAAA
10852921 AA
1 AA
10852923 AAGAAGAAGA
Statistics
Matches: 76, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
39 14 0.18
40 5 0.07
41 17 0.22
42 8 0.11
43 1 0.01
44 22 0.29
45 3 0.04
46 6 0.08
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (44 bp):
AAGAAAGAAAGAAAGAAGAAGAAAAGAAAAGGAGAAGAGAAAAA
Found at i:10852873 original size:39 final size:38
Alignment explanation
Indices: 10852801--10852932 Score: 148
Period size: 39 Copynumber: 3.5 Consensus size: 38
10852791 GGGAAGAAAG
*
10852801 AAAAAGAAGGAAAGAA-AAGAAAAGGAGAA-GAGAAAAA
1 AAAAAGAAAGAAAGAAGAAGAAAAGGA-AAGGAGAAAAA
*
10852838 AAGAAAGAAAGAAAGAAGAAGAAAAGGAAAGGAG-AAGA
1 AA-AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAAAA
* *
10852876 AAAAAGAAAGAAAGAAGGAAAGAAAAAGAAAGGAGAAGAGA
1 AAAAAGAAAGAAAGAA-G-AAGAAAAGGAAAGGAGAA-AAA
10852917 AAAAA-AAAG-AAGAAGA
1 AAAAAGAAAGAAAGAAGA
10852933 GGGAAGGAAG
Statistics
Matches: 85, Mismatches: 3, Indels: 14
0.83 0.03 0.14
Matches are distributed among these distances:
37 17 0.20
38 22 0.26
39 33 0.39
40 5 0.06
41 8 0.09
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (38 bp):
AAAAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAAAA
Found at i:10852881 original size:62 final size:61
Alignment explanation
Indices: 10852761--10852928 Score: 145
Period size: 60 Copynumber: 2.8 Consensus size: 61
10852751 GGGGGACCAG
* * *
10852761 AAGGAGAGGGAAAGAAAGAAAGAAATGAGAGGGAAGAAAGAAAAAGAAGGAAAGAAAAGAA
1 AAGGAGAGAGAAAAAAAGAAAGAAATGAGAGAGAAGAAAGAAAAAGAAGGAAAGAAAAGAA
*
10852822 AAGGAGAAGAGAAAAAAAGAAAGAAA-GA-A-AGAAG-AAGAAAAGGAAAGGAGAAGAAAA-AA
1 AAGGAG-AGAGAAAAAAAGAAAGAAATGAGAGAGAAGAAAGAAAAAG-AAGGA-AAGAAAAGAA
* * * * * *
10852881 GAAAGAAAGAAGGAAAGAA-AAAGAAAGGAGA-AG-AGAAAAAAAAAGAAG
1 -AAGGAGAG-AGAAAAAAAGAAAGAAATGAGAGAGAAGAAAGAAAAAGAAG
10852929 AAGAGGGAAG
Statistics
Matches: 89, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
58 8 0.09
59 20 0.22
60 26 0.29
61 18 0.20
62 17 0.19
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (61 bp):
AAGGAGAGAGAAAAAAAGAAAGAAATGAGAGAGAAGAAAGAAAAAGAAGGAAAGAAAAGAA
Found at i:10852923 original size:44 final size:44
Alignment explanation
Indices: 10852794--10852952 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 44
10852784 AATGAGAGGG
10852794 AAGAAAGAAAAAGAAGGAAAG-AAAAGAAAAGGAGAAGAGAAAAAAAGA
1 AAGAAAG--AAAGAAGGAAAGAAAAAG-AAAGGAGAAGAG-AAAAAA-A
*
10852842 AAGAAAGAAAGAA-G-AAGAAAAGGAAAGGAG-A-AG---AAAA
1 AAGAAAGAAAGAAGGAAAGAAAAAGAAAGGAGAAGAGAAAAAAA
10852879 AAGAAAGAAAGAAGGAAAGAAAAAGAAAGGAGAAGAGAAAAAAA
1 AAGAAAGAAAGAAGGAAAGAAAAAGAAAGGAGAAGAGAAAAAAA
*
10852923 AAG-AAGAAGAGGGAAGGAAGGAAAAAGAAA
1 AAGAAAGAA-A--GAAGGAAAGAAAAAGAAA
10852953 AGAAAAGAAA
Statistics
Matches: 97, Mismatches: 3, Indels: 24
0.78 0.02 0.19
Matches are distributed among these distances:
37 14 0.14
38 4 0.04
39 15 0.15
40 1 0.01
41 2 0.02
42 2 0.02
43 6 0.06
44 18 0.19
45 5 0.05
46 23 0.24
48 7 0.07
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (44 bp):
AAGAAAGAAAGAAGGAAAGAAAAAGAAAGGAGAAGAGAAAAAAA
Found at i:10852929 original size:25 final size:24
Alignment explanation
Indices: 10852844--10852955 Score: 67
Period size: 24 Copynumber: 4.8 Consensus size: 24
10852834 AAAAAAGAAA
* * *
10852844 GAAAGAAAGAAGAAGAAAAGGAAAG
1 GAAA-AAAAAAGAAGAAGAGGGAAG
10852869 GAGAAGAAAAAAGAAAGAA-A--GAAG
1 GA-AA-AAAAAAG-AAGAAGAGGGAAG
* *
10852893 GAAAGAAAAAG-A-AAG-GAGAAG
1 GAAAAAAAAAGAAGAAGAGGGAAG
10852914 AGAAAAAAAAAGAAGAAGAGGGAAG
1 -GAAAAAAAAAGAAGAAGAGGGAAG
**
10852939 GAAGGAAAAAGAA-AAGA
1 GAAAAAAAAAGAAGAAGA
10852956 AAAGAAAAGG
Statistics
Matches: 71, Mismatches: 7, Indels: 20
0.72 0.07 0.20
Matches are distributed among these distances:
19 2 0.03
20 1 0.01
21 4 0.06
22 16 0.23
23 7 0.10
24 19 0.27
25 7 0.10
26 10 0.14
27 5 0.07
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (24 bp):
GAAAAAAAAAGAAGAAGAGGGAAG
Found at i:10852964 original size:83 final size:83
Alignment explanation
Indices: 10852794--10852963 Score: 211
Period size: 83 Copynumber: 2.0 Consensus size: 83
10852784 AATGAGAGGG
*
10852794 AAGAAAGAAAAAGAAGGAAAGAAAAGAAAAGGAGAAGAGAAAAAAAGAAAGAAAGAAAGAAGAAG
1 AAGAAAG-AAAAGAAGGAAAGAAAAGAAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAAGAAGAAG
*
10852859 AAAAGGAAAGGAGAAGAAAA
65 AAAAAGAAA-GAGAAGAAAA
**
10852879 AAGAAAG-AAAGAAGGAAAGAAAA-AGAAAGGAGAAGAGAAAAAAAAAGAAG-AAGAGGGAAGGA
1 AAGAAAGAAAAGAAGGAAAGAAAAGA-AAAGGAGAAGAGAAAAAAAAA-AAGAAAGAAAGAA-GA
*
10852941 AGGAAAAAGAAAAGAAAAGAAAA
63 A-GAAAAAG-AAAGAGAAGAAAA
10852964 GGTATTTTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
82 1 0.01
83 43 0.57
84 6 0.08
85 22 0.29
86 3 0.04
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (83 bp):
AAGAAAGAAAAGAAGGAAAGAAAAGAAAAGGAGAAGAGAAAAAAAAAAAGAAAGAAAGAAGAAGA
AAAAGAAAGAGAAGAAAA
Found at i:10854466 original size:18 final size:18
Alignment explanation
Indices: 10854443--10854598 Score: 86
Period size: 18 Copynumber: 8.0 Consensus size: 18
10854433 GAGAGGGAAA
*
10854443 GAAAGAAAG-AAAGGAGAG
1 GAAAGAAAGAAAAAGA-AG
10854461 GAAAGAAAGAAAAAGAAG
1 GAAAGAAAGAAAAAGAAG
* *
10854479 GAAAGAAA-AGGAAAG-GG
1 GAAAGAAAGA-AAAAGAAG
*
10854496 GAAGAGAAA-AAAAAGAAA
1 GAA-AGAAAGAAAAAGAAG
10854514 GAAAGAAAGAAAGAAGAAAAG
1 GAAAGAAAGAAA-AAG--AAG
10854535 GAAAGGAGAAGAAAAAAGAAAG
1 GAAA-GA-AAG-AAAAAG-AAG
*
10854557 AAACAAGGAAAGAAAAAGAAAG
1 -GA-AA-GAAAGAAAAAG-AAG
*
10854579 GAGAAGAGAAAAAAAAGAAG
1 GA-AAGA-AAGAAAAAGAAG
10854599 AAGAGGGAAG
Statistics
Matches: 113, Mismatches: 11, Indels: 26
0.75 0.07 0.17
Matches are distributed among these distances:
17 14 0.12
18 35 0.31
19 8 0.07
20 5 0.04
21 17 0.15
22 16 0.14
23 10 0.09
24 8 0.07
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (18 bp):
GAAAGAAAGAAAAAGAAG
Found at i:10854479 original size:23 final size:23
Alignment explanation
Indices: 10854432--10854480 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
10854422 NNNNNNNNNN
*
10854432 GGAGAGGGAAAGAAAGAAAGAAA
1 GGAGAGGGAAAGAAAGAAAAAAA
10854455 GGAGA-GGAAAGAAAGAAAAAGAA
1 GGAGAGGGAAAGAAAGAAAAA-AA
10854478 GGA
1 GGA
10854481 AAGAAAAGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (23 bp):
GGAGAGGGAAAGAAAGAAAAAAA
Found at i:10854508 original size:21 final size:21
Alignment explanation
Indices: 10854438--10854622 Score: 95
Period size: 22 Copynumber: 8.8 Consensus size: 21
10854428 NNNNGGAGAG
*
10854438 GGAAAGAAAGAAAGAAAGGAG-A
1 GGAAAG-AA-AAAGAAAGGGGAA
10854460 GGAAAGAAAGAA-AAA---GAA
1 GGAAAGAAA-AAGAAAGGGGAA
*
10854478 GGAAAGAAAAGGAAAGGGGAA
1 GGAAAGAAAAAGAAAGGGGAA
10854499 GAGAAA-AAAAAGAAA---GAA
1 G-GAAAGAAAAAGAAAGGGGAA
* * *
10854517 AGAAAGAAAGAAGAAAAGGAAA
1 GGAAAGAAA-AAGAAAGGGGAA
***
10854539 GGAGAAGAAAAAAGAAAGAAACAA
1 GGA-AAG-AAAAAGAAAG-GGGAA
*
10854563 GGAAAGAAAAAGAAAGGAGAA
1 GGAAAGAAAAAGAAAGGGGAA
10854584 GAGAAA-AAAAAGAAGAAGAGGGAA
1 G-GAAAGAAAAAG-A-AAG-GGGAA
*
10854608 GGAAGGAAAAA-AAAG
1 GGAAAGAAAAAGAAAG
10854623 AAAAGAAAAG
Statistics
Matches: 130, Mismatches: 13, Indels: 41
0.71 0.07 0.22
Matches are distributed among these distances:
17 6 0.05
18 19 0.15
19 6 0.05
20 4 0.03
21 29 0.22
22 30 0.23
23 18 0.14
24 18 0.14
ACGTcount: A:0.68, C:0.01, G:0.31, T:0.00
Consensus pattern (21 bp):
GGAAAGAAAAAGAAAGGGGAA
Found at i:10854558 original size:34 final size:34
Alignment explanation
Indices: 10854508--10854602 Score: 104
Period size: 39 Copynumber: 2.6 Consensus size: 34
10854498 AGAGAAAAAA
*
10854508 AAGAAAGAAAGAAAGAAAGAAGAAAAGGAAAGGAG
1 AAGAAA-AAAGAAAGAAAGAAGAAAAAGAAAGGAG
10854543 AAGAAAAAAGAAAGAAACAAGGAAAGAAAAAGAAAGGAG
1 AAGAAAAAAGAAAG--A-AA-G-AAGAAAAAGAAAGGAG
10854582 AAGAGAAAAA-AAAG-AAGAAGA
1 AAGA-AAAAAGAAAGAAAGAAGA
10854603 GGGAAGGAAG
Statistics
Matches: 53, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
33 4 0.08
34 9 0.17
35 8 0.15
36 1 0.02
37 2 0.04
38 1 0.02
39 23 0.43
40 5 0.09
ACGTcount: A:0.72, C:0.01, G:0.27, T:0.00
Consensus pattern (34 bp):
AAGAAAAAAGAAAGAAAGAAGAAAAAGAAAGGAG
Found at i:10854578 original size:4 final size:4
Alignment explanation
Indices: 10854439--10854571 Score: 80
Period size: 4 Copynumber: 32.0 Consensus size: 4
10854429 NNNGGAGAGG
* *
10854439 GAAA GAAA GAAA GAAA GGAGAG GAAA GAAA G-AA -AAA GAAG GAAA GAAAA
1 GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA
*
10854488 GGAAA GGGGAA GAGAA -AAA -AAA GAAA GAAA GAAA GAAA G-AA GAAAA
1 -GAAA --GAAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA
* *
10854534 GGAAA GGAGAA GAAA -AAA GAAA GAAA CAAG GAAA GAAA
1 -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
10854572 AAGAAAGGAG
Statistics
Matches: 105, Mismatches: 10, Indels: 28
0.73 0.07 0.20
Matches are distributed among these distances:
3 15 0.14
4 59 0.56
5 22 0.21
6 9 0.09
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:10854581 original size:39 final size:40
Alignment explanation
Indices: 10854438--10854601 Score: 160
Period size: 42 Copynumber: 4.0 Consensus size: 40
10854428 NNNNGGAGAG
*
10854438 GGAAAGAAAGAAAGAAAGGAGAGGAAAGAAAG-AA-AAAGAA
1 GGAAAGAAA-AAAGAAAGGAGAAGAAA-AAAGAAAGAAAGAA
* *
10854478 GGAAAG-AAAAGGAAAGGGGAAGAGAAAAAAAAGAAAGAAAGAA
1 GGAAAGAAAAAAGAAA--GG-AGA-AGAAAAAAGAAAGAAAGAA
* *
10854521 AGAAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAGAAACAA
1 GGAAAGAA-AAAA-GAAAGGAGAAGAAAAAAGAAAGAAAGAA
10854563 GGAAAG-AAAAAGAAAGGAGAAGAGAAAAA-AAAG-AAGAA
1 GGAAAGAAAAAAGAAAGGAGAAGA-AAAAAGAAAGAAAGAA
10854601 G
1 G
10854602 AGGGAAGGAA
Statistics
Matches: 105, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
38 11 0.10
39 18 0.17
40 17 0.16
41 8 0.08
42 27 0.26
43 14 0.13
44 3 0.03
45 3 0.03
46 4 0.04
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (40 bp):
GGAAAGAAAAAAGAAAGGAGAAGAAAAAAGAAAGAAAGAA
Found at i:10856578 original size:24 final size:25
Alignment explanation
Indices: 10856550--10856614 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 25
10856540 TACCTTTTCT
10856550 TTTCTTTTTTTTCCTTC-CTTC-CC
1 TTTCTTTTTTTTCCTTCTCTTCTCC
10856573 TCTTCTTCTTTTTT--TTCTCTTCTCC
1 T-TTCTT-TTTTTTCCTTCTCTTCTCC
10856598 TTTCTTTTTCTTTCCTT
1 TTTCTTTTT-TTTCCTT
10856615 GTTTCTTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
23 7 0.20
24 17 0.49
25 9 0.26
26 2 0.06
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTCTTTTTTTTCCTTCTCTTCTCC
Found at i:10856604 original size:4 final size:4
Alignment explanation
Indices: 10856604--10856736 Score: 80
Period size: 4 Copynumber: 32.0 Consensus size: 4
10856594 CTCCTTTCTT
* *
10856604 TTTC TTTC CTTG TTTC TTTC TTT- TTTC TTCTCC TTTCC TTT- TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C TTTC T-TTC
*
10856650 TTTC TTTC TTTC TTTC TTT- TTT- TTCTC TTCCCC TTTCC TTTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TT-TC TT--TC TTT-C -TTTC TTTC
* *
10856697 CTTC -TT- TTTC TTTC TTTCC TCTCC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTT-C T-TTC TTTC TTTC TTTC TTTC
10856737 CCTCTCCTTC
Statistics
Matches: 106, Mismatches: 9, Indels: 28
0.74 0.06 0.20
Matches are distributed among these distances:
3 13 0.12
4 66 0.62
5 16 0.15
6 11 0.10
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.69
Consensus pattern (4 bp):
TTTC
Done.