Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 44 of 126
Found at i:12964525 original size:85 final size:86
Alignment explanation
Indices: 12964421--12964646 Score: 262
Period size: 85 Copynumber: 2.6 Consensus size: 86
12964411 GCTTCGTTGA
* * * * * *
12964421 TACATAACTTATCACTTAAGCTCACGAGGGGAGCTTTACTGATTACATAGTTTATCACTTAAGTT
1 TACACAACTTATCACTTAAGCTCATGAGGGAAGCTTCACTGATTACACAGCTTATCACTTAAGTT
*
12964486 CACG-AGGGAGCTTT-ACTAAT
66 AACGAAGGGAG-TTTCACTAAT
* * * *
12964506 TACTCAACTTATCATTTAAGCTCATGAGGGAAGCTTCATTGGTTACACAGCTTATCACTTAAGTT
1 TACACAACTTATCACTTAAGCTCATGAGGGAAGCTTCACTGATTACACAGCTTATCACTTAAGTT
*
12964571 AACGAAGGGAGTTTCACTGAT
66 AACGAAGGGAGTTTCACTAAT
* * *
12964592 TACACAACTTATCACTTAAACTCATGA-GGATAGTTTTGA-TGATTACACAGCTTAT
1 TACACAACTTATCACTTAAGCTCATGAGGGA-AG-CTTCACTGATTACACAGCTTAT
12964647 AAAACTGTTT
Statistics
Matches: 119, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
85 64 0.54
86 52 0.44
87 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (86 bp):
TACACAACTTATCACTTAAGCTCATGAGGGAAGCTTCACTGATTACACAGCTTATCACTTAAGTT
AACGAAGGGAGTTTCACTAAT
Found at i:12964627 original size:43 final size:42
Alignment explanation
Indices: 12964390--12964646 Score: 207
Period size: 43 Copynumber: 6.0 Consensus size: 42
12964380 ACATAGGTTG
*** *
12964390 TCACTTAAGCTCAC-ATGGGGAGCTTCGTTGA-TACATAACTTA
1 TCACTTAAGCTCACGA--GGGAGCTTTACTGATTACACAACTTA
* **
12964432 TCACTTAAGCTCACGAGGGGAGCTTTACTGATTACATAGTTTA
1 TCACTTAAGCTCACGA-GGGAGCTTTACTGATTACACAACTTA
* * *
12964475 TCACTTAAGTTCACGAGGGAGCTTTACTAATTACTCAACTTA
1 TCACTTAAGCTCACGAGGGAGCTTTACTGATTACACAACTTA
* * * * * *
12964517 TCATTTAAGCTCATGAGGGAAGCTTCATTGGTTACACAGCTTA
1 TCACTTAAGCTCACGAGGG-AGCTTTACTGATTACACAACTTA
* *
12964560 TCACTTAAGTTAACGAAGGGAG-TTTCACTGATTACACAACTTA
1 TCACTTAAGCTCACG-AGGGAGCTTT-ACTGATTACACAACTTA
* * * * *
12964603 TCACTTAAACTCATGAGGATAGTTTTGA-TGATTACACAGCTTA
1 TCACTTAAGCTCACGAGG-GAGCTTT-ACTGATTACACAACTTA
12964646 T
1 T
12964647 AAAACTGTTT
Statistics
Matches: 173, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
42 68 0.39
43 97 0.56
44 8 0.05
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (42 bp):
TCACTTAAGCTCACGAGGGAGCTTTACTGATTACACAACTTA
Found at i:12970932 original size:49 final size:49
Alignment explanation
Indices: 12970879--12971031 Score: 191
Period size: 49 Copynumber: 3.1 Consensus size: 49
12970869 CACACCTTCA
* * *
12970879 AGGCAGTTTTATTGTACTATATTTTTCAAAATAACAACACCATGGTTGT
1 AGGCAGCTTTATTGTACTATATTTTTCAGAATAACAACACCATGGATGT
* * *
12970928 AGGCAACTTTATTGTACTATAATTTTCAGAATAATAGA-ACCATGGATGT
1 AGGCAGCTTTATTGTACTATATTTTTCAGAATAACA-ACACCATGGATGT
* * ** *
12970977 AGGTAGCTTTATTGTACTATATTTTGCAGAATAACTGCACCGTGGATGT
1 AGGCAGCTTTATTGTACTATATTTTTCAGAATAACAACACCATGGATGT
12971026 AGGCAG
1 AGGCAG
12971032 ACTTATCAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 86 0.99
50 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (49 bp):
AGGCAGCTTTATTGTACTATATTTTTCAGAATAACAACACCATGGATGT
Found at i:12971258 original size:24 final size:24
Alignment explanation
Indices: 12971231--12971344 Score: 146
Period size: 24 Copynumber: 4.9 Consensus size: 24
12971221 TTTTTAGAAG
12971231 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAGTATAATAT
12971255 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAGTATAATAT
* *
12971279 ATTTAGTACTTATTAG---CATAT
1 ATTTAGTATTTATTAGTATAATAT
* *
12971300 ATTTAGTACTTATTAGCATAATAT
1 ATTTAGTATTTATTAGTATAATAT
*
12971324 ATTTAAG-ATTTATTATTATAA
1 ATTT-AGTATTTATTAGTATAA
12971345 AAATGTTTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
21 20 0.25
24 58 0.73
25 2 0.03
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTTAGTATTTATTAGTATAATAT
Found at i:12971262 original size:14 final size:14
Alignment explanation
Indices: 12971243--12971286 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
12971233 TTAGTATTTA
12971243 TTAGTATAATATAT
1 TTAGTATAATATAT
12971257 TTAGTAT--T-TA-
1 TTAGTATAATATAT
12971267 TTAGTATAATATAT
1 TTAGTATAATATAT
12971281 TTAGTA
1 TTAGTA
12971287 CTTATTAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 2 0.08
13 2 0.08
14 13 0.50
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (14 bp):
TTAGTATAATATAT
Found at i:12971301 original size:21 final size:21
Alignment explanation
Indices: 12971251--12971319 Score: 93
Period size: 21 Copynumber: 3.1 Consensus size: 21
12971241 TATTAGTATA
* *
12971251 ATATATTTAGTATTTATTAGTATA
1 ATATATTTAGTACTTATTAG---C
12971275 ATATATTTAGTACTTATTAGC
1 ATATATTTAGTACTTATTAGC
12971296 ATATATTTAGTACTTATTAGC
1 ATATATTTAGTACTTATTAGC
12971317 ATA
1 ATA
12971320 ATATATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
21 24 0.56
24 19 0.44
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.49
Consensus pattern (21 bp):
ATATATTTAGTACTTATTAGC
Found at i:12973641 original size:24 final size:24
Alignment explanation
Indices: 12973613--12973678 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
12973603 TTTCTAGAAG
*
12973613 ATTTAGTATTTATTAGTAAAATAT
1 ATTTAGCATTTATTAGTAAAATAT
* * *
12973637 ATTTAACATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGTAAAATAT
12973661 ATTT-GACATTTATTAGTA
1 ATTTAG-CATTTATTAGTA
12973679 TAAAATCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTAAAATAT
Found at i:12973681 original size:24 final size:24
Alignment explanation
Indices: 12973620--12973681 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
12973610 AAGATTTAGT
*
12973620 ATTTATTAGTAAAATATATTTAAC
1 ATTTATTAGTATAATATATTTAAC
* *
12973644 ATTTATTAGCATAATATATTTGAC
1 ATTTATTAGTATAATATATTTAAC
12973668 ATTTATTAGTATAA
1 ATTTATTAGTATAA
12973682 AATCTTTGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (24 bp):
ATTTATTAGTATAATATATTTAAC
Found at i:12973689 original size:24 final size:24
Alignment explanation
Indices: 12973620--12973689 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
12973610 AAGATTTAGT
*
12973620 ATTTATTAGTA-AAATATATTTAAC
1 ATTTATTAGTATAAA-ATATTTGAC
* *
12973644 ATTTATTAGCATAATATATTTGAC
1 ATTTATTAGTATAAAATATTTGAC
*
12973668 ATTTATTAGTATAAAATCTTTG
1 ATTTATTAGTATAAAATATTTG
12973690 TTATTTCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 37 0.95
25 2 0.05
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.47
Consensus pattern (24 bp):
ATTTATTAGTATAAAATATTTGAC
Found at i:12974840 original size:99 final size:100
Alignment explanation
Indices: 12974646--12974843 Score: 371
Period size: 99 Copynumber: 2.0 Consensus size: 100
12974636 TGAAAATCAT
12974646 ATTAGTCGCATATGCACCTTTAACTTGAGGAAATGTCAAAATATTTTTTTATGCCTACTAAGATG
1 ATTAGTCGCATATGCACCTTTAACTTGAGGAAATGTCAAAATATTTTTTTATGCCTACTAAGATG
12974711 ATGAATGTGTGGAAATGTGTGTTATTGAAACCCAC
66 ATGAATGTGTGGAAATGTGTGTTATTGAAACCCAC
* *
12974746 ATTAGTTGCATATTCACCTTTAACTTGAGGAAATGTCAAAATA-TTTTTTATGCCTACTAAGATG
1 ATTAGTCGCATATGCACCTTTAACTTGAGGAAATGTCAAAATATTTTTTTATGCCTACTAAGATG
12974810 ATGAATGTGTGGAAATGTGTGTTATTGAAACCCA
66 ATGAATGTGTGGAAATGTGTGTTATTGAAACCCA
12974844 TATGTTGATT
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
99 55 0.57
100 41 0.43
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (100 bp):
ATTAGTCGCATATGCACCTTTAACTTGAGGAAATGTCAAAATATTTTTTTATGCCTACTAAGATG
ATGAATGTGTGGAAATGTGTGTTATTGAAACCCAC
Found at i:12975067 original size:14 final size:14
Alignment explanation
Indices: 12975048--12975080 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
12975038 ATTTTGAGCA
*
12975048 TTGTGAGACTTAAT
1 TTGTGAAACTTAAT
12975062 TTGTGAAACTTAAT
1 TTGTGAAACTTAAT
12975076 TTGTG
1 TTGTG
12975081 TTTTAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.06, G:0.21, T:0.45
Consensus pattern (14 bp):
TTGTGAAACTTAAT
Found at i:12976597 original size:20 final size:21
Alignment explanation
Indices: 12976574--12976621 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
12976564 AAATAATTTT
*
12976574 AATAATTTTTA-ATTTTTAAA
1 AATAATTTTTATATATTTAAA
*
12976594 AATAAATTTTATATATTTAAA
1 AATAATTTTTATATATTTAAA
12976615 AA-AATTT
1 AATAATTT
12976622 AAATTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATAATTTTTATATATTTAAA
Found at i:12981625 original size:98 final size:98
Alignment explanation
Indices: 12981456--12981650 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
12981446 ATACAATAAA
*
12981456 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
12981521 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* *
12981554 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
12981619 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
12981651 CATAATTTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:12981844 original size:25 final size:26
Alignment explanation
Indices: 12981814--12981863 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12981804 ATATAAATAT
12981814 GAAAATATTC-ATTAAAAAAATATAG
1 GAAAATATTCGATTAAAAAAATATAG
* *
12981839 GAAAATATTCGTTTTAAAAAATATA
1 GAAAATATTCGATTAAAAAAATATA
12981864 TATACATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.32
Consensus pattern (26 bp):
GAAAATATTCGATTAAAAAAATATAG
Found at i:12982640 original size:19 final size:19
Alignment explanation
Indices: 12982616--12982744 Score: 213
Period size: 19 Copynumber: 6.7 Consensus size: 19
12982606 CATATATTCG
12982616 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
**
12982635 AAGATTATATATCATATCT
1 AAGATTGCATATCATATCT
12982654 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
12982673 AAGATTGCATATATCATATCT
1 AAGATTGC--ATATCATATCT
12982694 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
*
12982713 AGGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
12982732 AAGATTGCATATC
1 AAGATTGCATATC
12982745 CTCAAAAATT
Statistics
Matches: 102, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
19 83 0.81
21 19 0.19
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:12982694 original size:59 final size:59
Alignment explanation
Indices: 12982616--12982743 Score: 215
Period size: 59 Copynumber: 2.2 Consensus size: 59
12982606 CATATATTCG
*
12982616 AAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTGCATATCATATCT
1 AAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTGCATATCATATCT
* *
12982673 AAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTGCATATCATATCT
1 AAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTGCATATCATATCT
12982732 AAGATTGCATAT
1 AAGATTGCATAT
12982744 CCTCAAAAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
57 8 0.12
59 58 0.88
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (59 bp):
AAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTGCATATCATATCT
Found at i:12982945 original size:23 final size:22
Alignment explanation
Indices: 12982902--12982959 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
12982892 CAAAAGTATC
* *
12982902 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
12982923 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
12982946 TGCATATCATATCT
1 TACAAATCATATCT
12982960 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:12983286 original size:45 final size:44
Alignment explanation
Indices: 12983213--12983330 Score: 159
Period size: 45 Copynumber: 2.7 Consensus size: 44
12983203 TCGGCTTTAA
12983213 TCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGCCAT-CTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAAACTTG-CATACTT-AG
* * * *
12983258 TCTGCCCCACTGCAACTTGA-GGAGGATAAGACTTGCTTACTTAG
1 TCTGCTCCACTGCAACTTCAGGGA-GATAAAACTTGCATACTTAG
12983302 TCTGCTCCACTGCAACTTCAGGGAGATAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAA
12983331 GACTAGATGC
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
44 30 0.47
45 34 0.53
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGCATACTTAG
Found at i:12983403 original size:84 final size:85
Alignment explanation
Indices: 12983305--12983804 Score: 341
Period size: 84 Copynumber: 5.9 Consensus size: 85
12983295 TACTTAGTCT
* * *
12983305 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCT-CTCTGCAACTTCAAAGAGAT
1 GCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCAATCTGCTCCACTGCAACTTCAAAGAGAT
12983369 AAGATCTAATGTTTTAATCC
66 AAGATCTAATGTTTTAATCC
* * * * **
12983389 GCTCCACTGTAACTTCAGAGAGATAGGATTATCA-GCTTTAATCTGCTCCACTGCAACTTCAGGG
1 GCTCCACTGCAACTTCAGAGAGATAAGACTA-GATGC---AATCTGCTCCACTGCAACTTCAAAG
** *
12983453 AGATAAGA-CTAGATG---CGATCT
62 AGATAAGATCTA-ATGTTTTAATCC
* * * * * *
12983474 GCT-CTCTGCAACTTCAAAGAGATAAGATCTA-ATGTTTTAATCCGCTCCACTGTAACTTCAGAG
1 GCTCCACTGCAACTTCAGAGAGATAAGA-CTAGATG---CAATCTGCTCCACTGCAACTTCAAAG
* * *
12983537 AGATAGGAT-T-ATCAGCTTTAATCT
62 AGATAAGATCTAAT--GTTTTAATCC
* * *
12983561 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCT-CTCTGCAACTTCAAAGAGAT
1 GCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCAATCTGCTCCACTGCAACTTCAAAGAGAT
12983625 AAGATCTAATGTTTTAATCC
66 AAGATCTAATGTTTTAATCC
* * * * **
12983645 GCTCCACTGTAACTTCAGAGAGATAGGATTATCA-GCTTTAATCTGCTCCACTGCAACTTCAGGG
1 GCTCCACTGCAACTTCAGAGAGATAAGACTA-GATGC---AATCTGCTCCACTGCAACTTCAAAG
** *
12983709 AGATAAGA-CTAGATG---CGATCT
62 AGATAAGATCTA-ATGTTTTAATCC
* * * ** * **
12983730 GCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTCTAATCCACTCCACTACAACTTCAGGGA
1 GCTCCACTGCAACTTCAGAGAGATAAGA-CT-AGATGC-AATCTGCTCCACTGCAACTTCAAAGA
12983794 GATAAGATCTA
63 GATAAGATCTA
12983805 CAATCTTCAA
Statistics
Matches: 327, Mismatches: 58, Indels: 61
0.73 0.13 0.14
Matches are distributed among these distances:
82 2 0.01
83 1 0.00
84 191 0.58
85 27 0.08
86 4 0.01
87 30 0.09
88 72 0.22
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (85 bp):
GCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCAATCTGCTCCACTGCAACTTCAAAGAGAT
AAGATCTAATGTTTTAATCC
Found at i:12983411 original size:44 final size:44
Alignment explanation
Indices: 12983208--12983804 Score: 405
Period size: 44 Copynumber: 13.9 Consensus size: 44
12983198 GATTATCGGC
* *
12983208 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-AACT--TGCCAT
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAATG---T
* * * *
12983252 CTTCAGTCTGCCCCACTGCAACTTGAG-GAGGATAAGA-CT--TGCT
1 -TTTAATCTGCTCCACTGCAACTTCAGAGA-GATAAGATCTAATG-T
* *
12983295 TACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTAGATG-
1 T--TTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTA-ATGT
** * *
12983340 --CGATCTGCT-CTCTGCAACTTCAAAGAGATAAGATCTAATGT
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAATGT
* * * *
12983381 TTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-T-ATCAGC
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAAT--GT
*
12983425 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTAGATG-
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTA-ATGT
** * *
12983468 --CGATCTGCT-CTCTGCAACTTCAAAGAGATAAGATCTAATGT
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAATGT
* * * *
12983509 TTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-T-ATCAGC
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAAT--GT
*
12983553 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTAGATG-
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTA-ATGT
** * *
12983596 --CGATCTGCT-CTCTGCAACTTCAAAGAGATAAGATCTAATGT
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAATGT
* * * *
12983637 TTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-T-ATCAGC
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAAT--GT
*
12983681 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTAGATG-
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTA-ATGT
** * *
12983724 --CGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAATGT
* ** * *
12983765 TCTAATCCACTCCACTACAACTTCAGGGAGATAAGATCTA
1 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTA
12983805 CAATCTTCAA
Statistics
Matches: 437, Mismatches: 72, Indels: 87
0.73 0.12 0.15
Matches are distributed among these distances:
40 96 0.22
41 39 0.09
42 7 0.02
43 27 0.06
44 226 0.52
45 33 0.08
46 7 0.02
47 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAATGT
Found at i:12983839 original size:128 final size:128
Alignment explanation
Indices: 12983302--12983797 Score: 929
Period size: 128 Copynumber: 3.9 Consensus size: 128
12983292 GCTTACTTAG
12983302 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
12983367 ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATCAGCTTTAA
66 ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATCAGCTTTAA
12983430 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
12983495 ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATCAGCTTTAA
66 ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATCAGCTTTAA
12983558 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
12983623 ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATCAGCTTTAA
66 ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATCAGCTTTAA
*
12983686 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
* * * ** *
12983751 ATAAGATCTAAGGTTCTAATCCACTCCACTACAACTTCAGGGAGATA
66 ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATA
12983798 AGATCTACAA
Statistics
Matches: 361, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 361 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (128 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
ATAAGATCTAATGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATCAGCTTTAA
Found at i:12983925 original size:132 final size:132
Alignment explanation
Indices: 12983774--12984177 Score: 745
Period size: 132 Copynumber: 3.1 Consensus size: 132
12983764 TTCTAATCCA
** *
12983774 CTCCACTACAACTTCAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTGAGGGAG
1 CTCCACTACTGCTT-AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAG
12983839 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGAT
65 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGAT
12983904 CTG
130 CTG
12983907 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGA
12983972 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATC
66 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATC
12984037 TG
131 TG
*
12984039 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGA
* *
12984104 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATC
66 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATC
12984169 TG
131 TG
12984171 CTCCACT
1 CTCCACT
12984178 GTCAATGCAG
Statistics
Matches: 265, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
132 253 0.95
133 12 0.05
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGA
CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATC
TG
Found at i:12983929 original size:44 final size:44
Alignment explanation
Indices: 12983881--12984066 Score: 137
Period size: 44 Copynumber: 4.2 Consensus size: 44
12983871 TATCTTGGAA
*
12983881 AGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** ** * * * * *
12983925 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGG
1 AGATAAGATCCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * ** * * *
12983969 AGACAAG-GCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATC-CGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
12984013 AGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
12984057 AGATAAGATC
1 AGATAAGATC
12984067 TACAATCTTC
Statistics
Matches: 101, Mismatches: 33, Indels: 16
0.67 0.22 0.11
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
44 81 0.80
45 5 0.05
46 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (44 bp):
AGATAAGATCCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:12984076 original size:44 final size:44
Alignment explanation
Indices: 12983774--12984103 Score: 131
Period size: 44 Copynumber: 7.5 Consensus size: 44
12983764 TTCTAATCCA
** * *
12983774 CTCCACTACAACTTCAGGGAGATAAGATCTACAATCTTCAACCTT
1 CTCCACTACTGCTT-AGGGAGATAAGATCTACAATCTTCAATCTG
* * * * *** *
12983819 CTCCACTGCTGCTGAGGGAGACAAG-GCT-TGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAAT--CTTCAATCTG
* ** ** *
12983863 CTTCCCACTA-T-CTT-GGAAAGATAAGATCCGCCGTCTTCGATCTG
1 C-T-CCACTACTGCTTAGG-GAGATAAGATCTACAATCTTCAATCTG
* *
12983907 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTT
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAATCTG
* * * * * *** *
12983951 CTCCGCTGCTGCTGAGGGAGACAAG-GCT-TGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAAT--CTTCAATCTG
* ** ** *
12983995 CTTCCCACTA-T-CTT-GGAAAGATAAGATCCGCCGTCTTCGATCTG
1 C-T-CCACTACTGCTTAGG-GAGATAAGATCTACAATCTTCAATCTG
* *
12984039 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTT
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAATCTG
* * *
12984083 CTCCGCTGCTGCTCAGGGAGA
1 CTCCACTACTGCTTAGGGAGA
12984104 CAAGGCTTGG
Statistics
Matches: 202, Mismatches: 63, Indels: 41
0.66 0.21 0.13
Matches are distributed among these distances:
42 14 0.07
43 12 0.06
44 143 0.71
45 20 0.10
46 13 0.06
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAATCTG
Found at i:12985449 original size:8 final size:8
Alignment explanation
Indices: 12985436--12985479 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
12985426 TTCACTTTTA
12985436 TTTTTTGT
1 TTTTTTGT
*
12985444 TTTTTTAT
1 TTTTTTGT
12985452 TTTTTTG-
1 TTTTTTGT
12985459 -TTTTTGT
1 TTTTTTGT
12985466 TTTTTTGT
1 TTTTTTGT
12985474 TTTTTT
1 TTTTTT
12985480 TGAATCTGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 6 0.19
8 26 0.81
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (8 bp):
TTTTTTGT
Found at i:12985462 original size:22 final size:22
Alignment explanation
Indices: 12985437--12985479 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
12985427 TCACTTTTAT
12985437 TTTTTGTTTTTTTATTTTTTTG
1 TTTTTGTTTTTTTATTTTTTTG
*
12985459 TTTTTGTTTTTTTGTTTTTTT
1 TTTTTGTTTTTTTATTTTTTT
12985480 TGAATCTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.88
Consensus pattern (22 bp):
TTTTTGTTTTTTTATTTTTTTG
Found at i:12991034 original size:19 final size:19
Alignment explanation
Indices: 12991010--12991141 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
12991000 AATCATATAT
12991010 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
12991029 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
12991048 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
12991067 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
12991088 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
12991107 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
12991126 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
12991142 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:12991094 original size:59 final size:59
Alignment explanation
Indices: 12991003--12991140 Score: 221
Period size: 59 Copynumber: 2.4 Consensus size: 59
12990993 ATTACAAAAT
*
12991003 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
* *
12991058 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
12991117 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
12991141 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 58 0.76
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:12992133 original size:18 final size:18
Alignment explanation
Indices: 12992110--12992144 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
12992100 ATAAGTTTTA
12992110 AAAGTAAAAACGAAAAAT
1 AAAGTAAAAACGAAAAAT
*
12992128 AAAGTAAAACCGAAAAA
1 AAAGTAAAAACGAAAAA
12992145 AGAGAGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.09, G:0.11, T:0.09
Consensus pattern (18 bp):
AAAGTAAAAACGAAAAAT
Found at i:12996254 original size:21 final size:21
Alignment explanation
Indices: 12996230--12996276 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
12996220 GATAAAATGA
12996230 TTTTTCCAGTAAAAACCCAAG
1 TTTTTCCAGTAAAAACCCAAG
** * *
12996251 -TTTTCCCTTTAAAACTCAAG
1 TTTTTCCAGTAAAAACCCAAG
12996271 TTTTTC
1 TTTTTC
12996277 TTTTTTATTG
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.40
Consensus pattern (21 bp):
TTTTTCCAGTAAAAACCCAAG
Found at i:13002594 original size:27 final size:27
Alignment explanation
Indices: 13002553--13002645 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
13002543 GCCTCCACAG
* *
13002553 GCTTTTCTTTCATATTATGCCGCAAAA
1 GCTTTTCTTTCATATTACGCCACAAAA
* *
13002580 GCTTTTCTTTTATATTACGTCAC-AAA
1 GCTTTTCTTTCATATTACGCCACAAAA
*
13002606 GACTTTTCTTTCATATTACGCCACAAAG
1 G-CTTTTCTTTCATATTACGCCACAAAA
13002634 GCTTTTACTTTC
1 GCTTTT-CTTTC
13002646 TGACGTGTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
26 4 0.07
27 44 0.79
28 8 0.14
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.43
Consensus pattern (27 bp):
GCTTTTCTTTCATATTACGCCACAAAA
Found at i:13004772 original size:19 final size:20
Alignment explanation
Indices: 13004734--13004802 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 20
13004724 GCGGTGTCAC
13004734 AACATCCAAATCTAATGTTG-G
1 AACATCC-AAT-TAATGTTGCG
*
13004755 AACATCCAATTGATGTTGCG
1 AACATCCAATTAATGTTGCG
*
13004775 -ACATCCAATTCAAGTGTCGCG
1 AACATCCAATT-AA-TGTTGCG
13004796 -ACATCCA
1 AACATCCA
13004803 TGGTAGTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 17 0.40
20 5 0.12
21 20 0.48
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (20 bp):
AACATCCAATTAATGTTGCG
Found at i:13015291 original size:9 final size:9
Alignment explanation
Indices: 13015267--13015303 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13015257 TGAGTTTTCG
13015267 AATTCGAAT
1 AATTCGAAT
* *
13015276 AACTCGATT
1 AATTCGAAT
13015285 AATTCGAAT
1 AATTCGAAT
13015294 AATTCGAAT
1 AATTCGAAT
13015303 A
1 A
13015304 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13015420 original size:30 final size:30
Alignment explanation
Indices: 13015362--13015420 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
13015352 ATTTTTCCCT
* *
13015362 CAAAACTTTTACTCCTTCCCACTTCCCTCC
1 CAAAACTTTTACTCCCTCCCACTCCCCTCC
13015392 CAAAACTTTTACTCCCCTCCC-CTCCCCTC
1 CAAAACTTTTACT-CCCTCCCACTCCCCTC
13015421 TCAACCCCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.19, C:0.51, G:0.00, T:0.31
Consensus pattern (30 bp):
CAAAACTTTTACTCCCTCCCACTCCCCTCC
Found at i:13016514 original size:22 final size:23
Alignment explanation
Indices: 13016457--13016515 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 23
13016447 TCACATTCTC
* *
13016457 AATTCTCTCTCAAATCCCTTTTA
1 AATTCTCTCTCAATTCCCTCTTA
13016480 AATT-TCTCTCAATTCCCTCTT-
1 AATTCTCTCTCAATTCCCTCTTA
*
13016501 AATTCTCACTCAATT
1 AATTCTCTCTCAATT
13016516 TTTATTTCTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.12
22 24 0.75
23 4 0.12
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (23 bp):
AATTCTCTCTCAATTCCCTCTTA
Found at i:13022931 original size:22 final size:22
Alignment explanation
Indices: 13022885--13022931 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
13022875 TTTATAACTC
*
13022885 AAAA-AATTATAAAAAGTTTCT
1 AAAAGAATTATAAAAAATTTCT
13022906 -AAAGAATATATAAAAAATTT-T
1 AAAAGAAT-TATAAAAAATTTCT
13022927 AAAAG
1 AAAAG
13022932 TAAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 3 0.14
21 4 0.18
22 15 0.68
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (22 bp):
AAAAGAATTATAAAAAATTTCT
Found at i:13024607 original size:16 final size:16
Alignment explanation
Indices: 13024586--13024620 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13024576 GTATTTTCTT
**
13024586 TAAATTTTTTAAAAAA
1 TAAATTTTCAAAAAAA
13024602 TAAATTTTCAAAAAAA
1 TAAATTTTCAAAAAAA
13024618 TAA
1 TAA
13024621 TATTAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAATTTTCAAAAAAA
Found at i:13024856 original size:10 final size:10
Alignment explanation
Indices: 13024842--13024878 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
13024832 AAAATATCAA
13024842 TTTATATTAT
1 TTTATATTAT
*
13024852 ATTATATTAT
1 TTTATATTAT
*
13024862 TTTATTTTAT
1 TTTATATTAT
13024872 TTTATAT
1 TTTATAT
13024879 CATAAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTATATTAT
Found at i:13025559 original size:19 final size:18
Alignment explanation
Indices: 13025535--13025599 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 18
13025525 CTCAATCGGC
13025535 TAAAATAAATTAATTTTTA
1 TAAAATAAATT-ATTTTTA
*
13025554 TAAAATTAA-TA-TTTTA
1 TAAAATAAATTATTTTTA
*
13025570 TAAAATTTAAATTATTTATA
1 TAAAA--TAAATTATTTTTA
*
13025590 TAAATTAAAT
1 TAAAATAAAT
13025600 ATAATAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
16 10 0.26
17 1 0.03
18 9 0.24
19 10 0.26
20 8 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAAATAAATTATTTTTA
Found at i:13025570 original size:16 final size:15
Alignment explanation
Indices: 13025541--13025597 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 15
13025531 CGGCTAAAAT
13025541 AAATTAATTTTTATA
1 AAATTAATTTTTATA
13025556 AAATTAATATTTTATA
1 AAATTAAT-TTTTATA
13025572 AAATTTAAATTATTTATA
1 AAA-TT-AATT-TTTATA
13025590 TAAATTAA
1 -AAATTAA
13025598 ATATAATAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
15 8 0.22
16 10 0.27
17 5 0.14
18 11 0.30
19 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTAATTTTTATA
Found at i:13025702 original size:13 final size:13
Alignment explanation
Indices: 13025684--13025722 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
13025674 TAGAATAATT
13025684 ATTTATATAAATA
1 ATTTATATAAATA
*
13025697 ATTTATAT-AATT
1 ATTTATATAAATA
13025709 ATTTAT-TAAATA
1 ATTTATATAAATA
13025721 AT
1 AT
13025723 AGTTATTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 1 0.04
12 14 0.61
13 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTTATATAAATA
Found at i:13036477 original size:17 final size:19
Alignment explanation
Indices: 13036445--13036485 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
13036435 TTTGAACTAA
13036445 GTTTTAGGCTTTGGTTTT-
1 GTTTTAGGCTTTGGTTTTG
*
13036463 GTTTTGGGC-TTGGTTTTG
1 GTTTTAGGCTTTGGTTTTG
13036481 GTTTT
1 GTTTT
13036486 TGTTTTTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.02, C:0.05, G:0.32, T:0.61
Consensus pattern (19 bp):
GTTTTAGGCTTTGGTTTTG
Found at i:13037136 original size:17 final size:17
Alignment explanation
Indices: 13037104--13037141 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
13037094 ATTTTAATAG
13037104 ATTTAATATTTAATTTA
1 ATTTAATATTTAATTTA
*
13037121 ATTTAATATTTAATTTT
1 ATTTAATATTTAATTTA
13037138 ATTT
1 ATTT
13037142 TATTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTAATATTTAATTTA
Found at i:13042376 original size:64 final size:64
Alignment explanation
Indices: 13042288--13042411 Score: 169
Period size: 64 Copynumber: 1.9 Consensus size: 64
13042278 GCATCTCGAT
* * * * * *
13042288 CGGTATTTGTCCTACATATGTTGCGGATATACTGTAGCTCTTTGTGAGCGTCCTGCTATATGAC
1 CGGTATTTGTCCTACATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCCTGATATATGAC
*
13042352 CGGTA-TTGATCCTGCATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCCTGATATA
1 CGGTATTTG-TCCTACATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCCTGATATA
13042412 GGCTCTTTGT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
63 3 0.06
64 49 0.94
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (64 bp):
CGGTATTTGTCCTACATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCCTGATATATGAC
Found at i:13042424 original size:25 final size:25
Alignment explanation
Indices: 13042387--13042443 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
13042377 GACATACCGC
13042387 AGCTCTTTATGAGCGTCCTGAT-AT
1 AGCTCTTTATGAGCGTCCTGATAAT
* *
13042411 AGGCTCTTTGTGAGCTTCCTGATAAT
1 A-GCTCTTTATGAGCGTCCTGATAAT
13042437 AGCTCTT
1 AGCTCTT
13042444 CGGAGTTACC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.03
25 25 0.86
26 3 0.10
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (25 bp):
AGCTCTTTATGAGCGTCCTGATAAT
Found at i:13044592 original size:39 final size:38
Alignment explanation
Indices: 13044549--13044630 Score: 127
Period size: 34 Copynumber: 2.2 Consensus size: 38
13044539 TTCTGTTTCC
13044549 TCAAATGAAAACCAACTACCCGATTGGCTAATATATTAT
1 TCAAA-GAAAACCAACTACCCGATTGGCTAATATATTAT
13044588 TC----AAAACCAACTACCCGATTGGCTAATATATTAT
1 TCAAAGAAAACCAACTACCCGATTGGCTAATATATTAT
13044622 TCAAAGAAA
1 TCAAAGAAA
13044631 TCATGGTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
34 34 0.87
38 3 0.08
39 2 0.05
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.27
Consensus pattern (38 bp):
TCAAAGAAAACCAACTACCCGATTGGCTAATATATTAT
Found at i:13044599 original size:34 final size:34
Alignment explanation
Indices: 13044556--13044626 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
13044546 TCCTCAAATG
13044556 AAAACCAACTACCCGATTGGCTAATATATTATTC
1 AAAACCAACTACCCGATTGGCTAATATATTATTC
13044590 AAAACCAACTACCCGATTGGCTAATATATTATTC
1 AAAACCAACTACCCGATTGGCTAATATATTATTC
13044624 AAA
1 AAA
13044627 GAAATCATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (34 bp):
AAAACCAACTACCCGATTGGCTAATATATTATTC
Found at i:13052823 original size:23 final size:22
Alignment explanation
Indices: 13052797--13052884 Score: 97
Period size: 23 Copynumber: 3.9 Consensus size: 22
13052787 GGCTCTATTA
13052797 AGCTAAAACAGTAAGCTCTGACG
1 AGCTAAAACAGTAAGCTCT-ACG
*
13052820 AGCT-GAACAGTAAGCTCATACG
1 AGCTAAAACAGTAAGCTC-TACG
* *
13052842 AGCTAAAACGGTAAGCTTCAACG
1 AGCTAAAACAGTAAGC-TCTACG
*
13052865 TGCTGAAAACAGTAAGCTCT
1 AGCT-AAAACAGTAAGCTCT
13052885 TATAAGCTGA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
22 19 0.35
23 22 0.41
24 13 0.24
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.19
Consensus pattern (22 bp):
AGCTAAAACAGTAAGCTCTACG
Found at i:13052831 original size:22 final size:22
Alignment explanation
Indices: 13052803--13052883 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 22
13052793 ATTAAGCTAA
13052803 AACAGTAAGCTC-TGACGAGCTG
1 AACAGTAAGCTCAT-ACGAGCTG
*
13052825 AACAGTAAGCTCATACGAGCTAA
1 AACAGTAAGCTCATACGAGCT-G
* *
13052848 AACGGTAAGCTTCA-ACGTGCTG
1 AACAGTAAGC-TCATACGAGCTG
13052870 AAAACAGTAAGCTC
1 --AACAGTAAGCTC
13052884 TTATAAGCTG
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
22 19 0.39
23 18 0.37
24 12 0.24
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (22 bp):
AACAGTAAGCTCATACGAGCTG
Found at i:13066321 original size:35 final size:35
Alignment explanation
Indices: 13066270--13066338 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
13066260 TTTTATATTA
*
13066270 TTTAAATGTTTGTGTAAGTTATGATAATCATTAAC
1 TTTAAATGTTTATGTAAGTTATGATAATCATTAAC
13066305 TTTAAATGTTTATGTAAGTTATGATAATCATTAA
1 TTTAAATGTTTATGTAAGTTATGATAATCATTAA
13066339 ATTTTATTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTAAATGTTTATGTAAGTTATGATAATCATTAAC
Found at i:13067019 original size:26 final size:25
Alignment explanation
Indices: 13066978--13067028 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
13066968 AATGTTTGAT
*
13066978 AAATTTAAATATCAAATTAGAAAAAA
1 AAATTTAAATACCAAATTA-AAAAAA
*
13067004 AAATTTAAGTACCAAATTAAAAAAA
1 AAATTTAAATACCAAATTAAAAAAA
13067029 TATAAAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.65, C:0.06, G:0.04, T:0.25
Consensus pattern (25 bp):
AAATTTAAATACCAAATTAAAAAAA
Found at i:13068104 original size:23 final size:23
Alignment explanation
Indices: 13068078--13068148 Score: 124
Period size: 23 Copynumber: 3.1 Consensus size: 23
13068068 CCTTTATTTA
*
13068078 ATATATTCCTATTTTCATAAACT
1 ATATATTCCTGTTTTCATAAACT
*
13068101 ATATATTCTTGTTTTCATAAACT
1 ATATATTCCTGTTTTCATAAACT
13068124 ATATATTCCTGTTTTCATAAACT
1 ATATATTCCTGTTTTCATAAACT
13068147 AT
1 AT
13068149 TTCATAAACA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.32, C:0.15, G:0.03, T:0.49
Consensus pattern (23 bp):
ATATATTCCTGTTTTCATAAACT
Found at i:13068205 original size:13 final size:13
Alignment explanation
Indices: 13068184--13068213 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
13068174 TATTTTAATT
*
13068184 ATTTTCTAATAAA
1 ATTTCCTAATAAA
13068197 ATTTCCTAATAAA
1 ATTTCCTAATAAA
13068210 ATTT
1 ATTT
13068214 TTACCTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTCCTAATAAA
Found at i:13069173 original size:42 final size:39
Alignment explanation
Indices: 13069082--13069203 Score: 120
Period size: 40 Copynumber: 3.0 Consensus size: 39
13069072 ATACATATTC
*
13069082 GCGGCGTTTATGAAAAAGCGCCGCTATTGCTAACCTTTT
1 GCGGCGTTTATGAAAAAACGCCGCTATTGCTAACCTTTT
* * *
13069121 GCGACTTTTATGAGAAAAACGCCGCTATGGTTCT-ACTCTTTT
1 GCGGCGTTTATGA-AAAAACGCCGCTAT--TGCTAAC-CTTTT
** * *
13069163 GCGGCGTTTATTCAAAAACGCCGCTAATGCCTTACCTTTT
1 GCGGCGTTTATGAAAAAACGCCGCTATTG-CTAACCTTTT
13069203 G
1 G
13069204 TAGCATTTTG
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
39 12 0.18
40 21 0.31
41 17 0.25
42 17 0.25
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (39 bp):
GCGGCGTTTATGAAAAAACGCCGCTATTGCTAACCTTTT
Found at i:13077239 original size:37 final size:37
Alignment explanation
Indices: 13077198--13077272 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
13077188 CTGTTATAAG
*
13077198 ATTAAGTAAAAATTGGCTAGCATAATTTATGGTTAAA
1 ATTAAGTAAAAACTGGCTAGCATAATTTATGGTTAAA
*
13077235 ATTAAGTAAAAACTGGCTAGCATGATTTATGGTTAAA
1 ATTAAGTAAAAACTGGCTAGCATAATTTATGGTTAAA
13077272 A
1 A
13077273 ATGGTGAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.43, C:0.07, G:0.17, T:0.33
Consensus pattern (37 bp):
ATTAAGTAAAAACTGGCTAGCATAATTTATGGTTAAA
Found at i:13080116 original size:22 final size:20
Alignment explanation
Indices: 13080088--13080136 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
13080078 GATCCAAGTT
13080088 CTGATACATAAAAGACTATGTA
1 CTGATACAT-AAAGAC-ATGTA
* *
13080110 CTGATACATATAGGCATGTA
1 CTGATACATAAAGACATGTA
13080130 CTGATAC
1 CTGATAC
13080137 CTTAGATCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.48
21 4 0.16
22 9 0.36
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (20 bp):
CTGATACATAAAGACATGTA
Found at i:13082388 original size:44 final size:43
Alignment explanation
Indices: 13082320--13082402 Score: 130
Period size: 44 Copynumber: 1.9 Consensus size: 43
13082310 ATCTTATTTC
* *
13082320 TCATCTCATAATCGTTTCTCATATTTTCCATTTCAATATTTTA
1 TCATCTCATAATCATTTCTCATATTTGCCATTTCAATATTTTA
*
13082363 TCATCTCATATTCATATTCTCATATTTGCCATTTCAATAT
1 TCATCTCATAATCAT-TTCTCATATTTGCCATTTCAATAT
13082403 CAATCACATA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 13 0.36
44 23 0.64
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (43 bp):
TCATCTCATAATCATTTCTCATATTTGCCATTTCAATATTTTA
Found at i:13110489 original size:63 final size:64
Alignment explanation
Indices: 13110400--13110580 Score: 208
Period size: 63 Copynumber: 2.9 Consensus size: 64
13110390 TATCCTTGGA
* * *
13110400 GAAGGTGTTGATGCA-ATGAATAATTGTGTATGTTGTGGTGCTTGTGTAAAATAAACT-GCTGCT
1 GAAGGTGTTGATGCAGAGGAATGATTGTGTATGTTGTGGTGCTTGTGTAAAATAAACTAG-AGCT
* * * * * *
13110463 GAATGTGTTGATGCAGA-GAATGATTGTGCATGCTGTAGTGCTAGTGTAAAATAAATTAGAGCT
1 GAAGGTGTTGATGCAGAGGAATGATTGTGTATGTTGTGGTGCTTGTGTAAAATAAACTAGAGCT
* * * *
13110526 GAAGGTTTTGAT-CCGAGGAATGATTGTGTGTGTTGTGGTGCTTGTGTCAAATAAA
1 GAAGGTGTTGATGCAGAGGAATGATTGTGTATGTTGTGGTGCTTGTGTAAAATAAA
13110581 TTGGTTTAGA
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
62 3 0.03
63 93 0.95
64 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.30, T:0.35
Consensus pattern (64 bp):
GAAGGTGTTGATGCAGAGGAATGATTGTGTATGTTGTGGTGCTTGTGTAAAATAAACTAGAGCT
Found at i:13114875 original size:66 final size:66
Alignment explanation
Indices: 13114795--13114923 Score: 231
Period size: 66 Copynumber: 2.0 Consensus size: 66
13114785 TGTAAAGAAG
* * *
13114795 TATGATTCGGTTATGGGTATGAGTAAAGTCTTTATGAATGTGTATTTATGTTATATGTATGATCA
1 TATGATTCGATTATGGATATGAATAAAGTCTTTATGAATGTGTATTTATGTTATATGTATGATCA
13114860 T
66 T
13114861 TATGATTCGATTATGGATATGAATAAAGTCTTTATGAATGTGTATTTATGTTATATGTATGAT
1 TATGATTCGATTATGGATATGAATAAAGTCTTTATGAATGTGTATTTATGTTATATGTATGAT
13114924 GCATGATTGA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (66 bp):
TATGATTCGATTATGGATATGAATAAAGTCTTTATGAATGTGTATTTATGTTATATGTATGATCA
T
Found at i:13115320 original size:23 final size:23
Alignment explanation
Indices: 13115242--13115325 Score: 96
Period size: 23 Copynumber: 3.7 Consensus size: 23
13115232 AAATTATTTG
* *
13115242 TGAAGCCTTTGTGACGTATTCTA
1 TGAAGCCTTTGTGGCATATTCTA
* * *
13115265 TGGAGCCTTTGTGGCACAATCTA
1 TGAAGCCTTTGTGGCATATTCTA
* *
13115288 TGAAGGCTTTGTGGCATATTCTG
1 TGAAGCCTTTGTGGCATATTCTA
*
13115311 TAAAGCCTTTGTGGC
1 TGAAGCCTTTGTGGC
13115326 GTACTTTGTA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (23 bp):
TGAAGCCTTTGTGGCATATTCTA
Found at i:13116474 original size:25 final size:23
Alignment explanation
Indices: 13116437--13116500 Score: 58
Period size: 25 Copynumber: 2.7 Consensus size: 23
13116427 ATATTTAGTC
**
13116437 ATATAATAAATTATTAATATAATT
1 ATATAATTTATTATTAATA-AATT
13116461 AATATAATTTATTATTTTAATAAATT
1 -ATATAATTTATTA--TTAATAAATT
*
13116487 ATTTAATTT-TTATT
1 ATATAATTTATTATT
13116501 TTAATAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
22 2 0.06
24 3 0.09
25 19 0.56
26 4 0.12
27 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATATAATTTATTATTAATAAATT
Found at i:13116488 original size:16 final size:19
Alignment explanation
Indices: 13116440--13116489 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 19
13116430 TTTAGTCATA
13116440 TAATAAATTATTAATATAAT
1 TAATAAATTATTAATAT-AT
13116460 TAATATAATTTATT-AT-T-T
1 TAATA-AA-TTATTAATATAT
13116478 TAATAAATTATT
1 TAATAAATTATT
13116490 TAATTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.18
17 2 0.07
18 6 0.21
20 6 0.21
21 4 0.14
22 5 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATAAATTATTAATATAT
Found at i:13116514 original size:24 final size:25
Alignment explanation
Indices: 13116455--13116514 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
13116445 AATTATTAAT
* *
13116455 ATAATTAATATAATTTATTATTTTA
1 ATAATAAATTTAATTTATTATTTTA
*
13116480 ATAA-ATTATTTAATTT-TTATTTTA
1 ATAATA-AATTTAATTTATTATTTTA
13116504 ATAATAAATTT
1 ATAATAAATTT
13116515 TAAAAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
ATAATAAATTTAATTTATTATTTTA
Found at i:13116516 original size:13 final size:14
Alignment explanation
Indices: 13116498--13116539 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
13116488 TTTAATTTTT
13116498 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
13116511 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
13116526 ATTTTAAATAATAT
1 ATTTT-AATAATAT
13116540 TCTTCAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:13116524 original size:16 final size:16
Alignment explanation
Indices: 13116502--13116538 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
13116492 ATTTTTATTT
13116502 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
13116519 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
13116534 TAATA
1 TAATA
13116539 TTCTTCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:13116571 original size:15 final size:15
Alignment explanation
Indices: 13116551--13116592 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
13116541 CTTCAAATTT
13116551 TATTAAAATATTTAA
1 TATTAAAATATTTAA
*
13116566 TATTAATAT-TTTAA
1 TATTAAAATATTTAA
*
13116580 TAAT-AAATATTTA
1 TATTAAAATATTTA
13116593 TTACAACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 3 0.13
14 12 0.52
15 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAAAATATTTAA
Found at i:13116621 original size:15 final size:15
Alignment explanation
Indices: 13116556--13116623 Score: 52
Period size: 15 Copynumber: 4.4 Consensus size: 15
13116546 AATTTTATTA
13116556 AAATAT-TTAAT-AT
1 AAATATATTAATAAT
* *
13116569 TAATATTTTAATAAT
1 AAATATATTAATAAT
13116584 AAATATTTATTACA-ACTAT
1 AAATA--TATTA-ATA--AT
13116603 AAATATATTAATAAT
1 AAATATATTAATAAT
13116618 AAATAT
1 AAATAT
13116624 TTTATAGTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
13 5 0.11
14 5 0.11
15 14 0.32
16 1 0.02
17 11 0.25
18 1 0.02
19 7 0.16
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATATTAATAAT
Found at i:13124060 original size:119 final size:115
Alignment explanation
Indices: 13123848--13124306 Score: 415
Period size: 119 Copynumber: 3.9 Consensus size: 115
13123838 ATGACATAAT
* * * * * * *
13123848 TCTTGGTCTCAGAGACACATCTCAAACAATGCTACCTTATCTCAAAATCATAAATTTCAAATCTT
1 TCTTGGTCTAAGAGACAGA-C-CAAACATTGGTACCTTATGTCAAAATCATAAAATTCAAATATT
* * * *
13123913 TACACTTTGAAGTAATAATAAAAGGAATTTGTCATTGTACAGACACATATATG
64 TACATTTTAAAGTAACAATAAATGGAATTTGTCATTGTACAGACACA-ATATG
* *
13123966 TCCTTGGTCTAAGAGACACGGACCAAACATTGGTACTTTATGTCAAAATGATAAAATTCAAATAT
1 T-CTTGGTCTAAGAGACA--GACCAAACATTGGTACCTTATGTCAAAATCATAAAATTCAAATAT
* * * * * *
13124031 TTACATTTTAAAGCAACAATAAATGGAATTTGCCATAGAACACACAAGCGAATCTG
63 TTACATTTTAAAGTAACAATAAATGGAATTTGTCATTGTACAGAC-A-C-AATATG
* * * * *
13124087 TCTTTGTCTCAGAGACAGATCAAACCTTGGTACCTTATGTCAAAAATCATGAAATTCAAATATTT
1 TCTTGGTCTAAGAGACAGACCAAACATTGGTACCTTATGTC-AAAATCATAAAATTCAAATATTT
* ** *
13124152 ACATTTTAAAGTAACAATAAATGGAATTAGTCATACTACACAGACACACACATG
65 ACATTTTAAAGTAACAATAAATGGAATTTGTCAT--TGTACAGACACA-ATATG
* * * * *
13124206 TCTTGGTCTAACAGAGAGATCAAATATTGGCT-CCTT-TG--AAAAT-AAAAAATTTCAAATATT
1 TCTTGGTCTAAGAGACAGACCAAACATTGG-TACCTTATGTCAAAATCATAAAA-TTCAAATATT
* * * *
13124266 TACATCTTAAAGTGACAATAAATCGAATTTGTCATGGTACA
64 TACATTTTAAAGTAACAATAAATGGAATTTGTCATTGTACA
13124307 TGGACATGTG
Statistics
Matches: 279, Mismatches: 50, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
113 3 0.01
114 4 0.01
115 46 0.16
118 25 0.09
119 170 0.61
120 18 0.06
121 12 0.04
122 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (115 bp):
TCTTGGTCTAAGAGACAGACCAAACATTGGTACCTTATGTCAAAATCATAAAATTCAAATATTTA
CATTTTAAAGTAACAATAAATGGAATTTGTCATTGTACAGACACAATATG
Found at i:13124286 original size:234 final size:236
Alignment explanation
Indices: 13123848--13124296 Score: 527
Period size: 238 Copynumber: 1.9 Consensus size: 236
13123838 ATGACATAAT
*
13123848 TCTTGGTCTCAGAGACACATCTCAAACAATGCTACCTTATCTCAAAATCATAAATTTCAAATCTT
1 TCTTGGTCTCAGAGACACA-CTCAAACAATGCTACCTTATCTCAAAATCATAAATTTCAAATATT
* * * ** * *
13123913 TACACTTTGAAGTAATAATAAAAGGAATTTGTCATTGTACAGACACATATATGTCCTTGGTCTAA
65 TACACTTTAAAGTAACAATAAAAGGAATTAGTCATTACACAGACACACACATGTCCTTGGTCTAA
* * * *
13123978 GAGACACGGACCAAACATTGGTACTTTATGTCAAAATGATAAAATTCAAATATTTACATTTTAAA
130 CAGACAC-GACCAAACATTGGTACCTTATG-CAAAATGAAAAAATTCAAATATTTACATCTTAAA
*
13124043 GCAACAATAAATGGAATTTGCCATAGAACACACAAGCGAATCTG
193 GCAACAATAAATCGAATTTGCCATAGAACACACAAGCGAATCTG
* * ** * *
13124087 TCTTTGTCTCAGAGACAGA-TCAAACCTTGGTACCTTATGTCAAAAATCATGAAA-TTCAAATAT
1 TCTTGGTCTCAGAGACACACTCAAACAATGCTACCTTATCTC-AAAATCAT-AAATTTCAAATAT
* *
13124150 TTACATTTTAAAGTAACAATAAATGGAATTAGTCATACTACACAGACACACACATGT-CTTGGTC
64 TTACACTTTAAAGTAACAATAAAAGGAATTAGTCAT--TACACAGACACACACATGTCCTTGGTC
* * *
13124214 TAACAGAGA-GATCAAATATTGGCT-CCTT-TG-AAAAT-AAAAAATTTCAAATATTTACATCTT
127 TAACAGACACGACCAAACATTGG-TACCTTATGCAAAATGAAAAAA-TTCAAATATTTACATCTT
**
13124274 AAAGTGACAATAAATCGAATTTG
190 AAAGCAACAATAAATCGAATTTG
13124297 TCATGGTACA
Statistics
Matches: 178, Mismatches: 26, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
233 5 0.03
234 42 0.24
236 2 0.01
237 32 0.18
238 48 0.27
239 34 0.19
240 15 0.08
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (236 bp):
TCTTGGTCTCAGAGACACACTCAAACAATGCTACCTTATCTCAAAATCATAAATTTCAAATATTT
ACACTTTAAAGTAACAATAAAAGGAATTAGTCATTACACAGACACACACATGTCCTTGGTCTAAC
AGACACGACCAAACATTGGTACCTTATGCAAAATGAAAAAATTCAAATATTTACATCTTAAAGCA
ACAATAAATCGAATTTGCCATAGAACACACAAGCGAATCTG
Found at i:13128181 original size:13 final size:13
Alignment explanation
Indices: 13128165--13128206 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
13128155 AATAAATATA
13128165 TATTTTTTATTTT
1 TATTTTTTATTTT
13128178 TATTTTTTATTTTT
1 TATTTTTTA-TTTT
*
13128192 TATTTTTTAATTT
1 TATTTTTTATTTT
13128205 TA
1 TA
13128207 AAATACTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 14 0.52
14 13 0.48
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:13128185 original size:8 final size:7
Alignment explanation
Indices: 13128165--13128205 Score: 66
Period size: 7 Copynumber: 5.9 Consensus size: 7
13128155 AATAAATATA
13128165 TATTTTT
1 TATTTTT
13128172 TA-TTTT
1 TATTTTT
13128178 TATTTTT
1 TATTTTT
13128185 TATTTTT
1 TATTTTT
13128192 TATTTTT
1 TATTTTT
13128199 TAATTTT
1 T-ATTTT
13128206 AAAATACTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.19
7 21 0.66
8 5 0.16
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TATTTTT
Found at i:13128668 original size:23 final size:23
Alignment explanation
Indices: 13128620--13128675 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 23
13128610 TCTTCTTTGG
*
13128620 TCTCTTTTACTTTTTATTTTCGT
1 TCTCTTTTCCTTTTTATTTTCGT
*
13128643 TCTCATTTTCCTTTTTTTTTTC-T
1 TCTC-TTTTCCTTTTTATTTTCGT
13128666 TCT-TTTTCCT
1 TCTCTTTTCCT
13128676 ACCCTAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 7 0.23
23 8 0.27
24 15 0.50
ACGTcount: A:0.05, C:0.21, G:0.02, T:0.71
Consensus pattern (23 bp):
TCTCTTTTCCTTTTTATTTTCGT
Found at i:13129710 original size:10 final size:10
Alignment explanation
Indices: 13129695--13129770 Score: 86
Period size: 10 Copynumber: 7.9 Consensus size: 10
13129685 AAGTTTATGA
13129695 TTTTTATAAG
1 TTTTTATAAG
13129705 TTTTTATAAG
1 TTTTTATAAG
13129715 TTTTTATAA-
1 TTTTTATAAG
*
13129724 TATTTATAAG
1 TTTTTATAAG
*
13129734 TTTTTATGA-
1 TTTTTATAAG
13129743 TTTTTATAA-
1 TTTTTATAAG
**
13129752 TAGTTATAAG
1 TTTTTATAAG
*
13129762 TTTATATAA
1 TTTTTATAA
13129771 ATATATTAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
9 23 0.42
10 32 0.58
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (10 bp):
TTTTTATAAG
Found at i:13129718 original size:19 final size:18
Alignment explanation
Indices: 13129683--13129770 Score: 72
Period size: 19 Copynumber: 4.7 Consensus size: 18
13129673 TTTAAAAAAA
*
13129683 ATAAG-TTTATGATTTTT
1 ATAAGTTTTATAATTTTT
13129700 ATAAGTTTTTATAAGTTTTT
1 ATAAG-TTTTATAA-TTTTT
13129720 ATAA-TATTTATAAGTTTTT
1 ATAAGT-TTTATAA-TTTTT
* * **
13129739 ATGATTTTTATAATAGTT
1 ATAAGTTTTATAATTTTT
13129757 ATAAGTTTATATAA
1 ATAAGTTT-TATAA
13129771 ATATATTAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
17 5 0.08
18 10 0.17
19 34 0.58
20 10 0.17
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (18 bp):
ATAAGTTTTATAATTTTT
Found at i:13129839 original size:10 final size:9
Alignment explanation
Indices: 13129825--13129903 Score: 68
Period size: 10 Copynumber: 8.1 Consensus size: 9
13129815 TAGAAAAAAA
13129825 TTATATTTT
1 TTATATTTT
*
13129834 ATTATAAATTT
1 -TTAT-ATTTT
13129845 TTATATTTT
1 TTATATTTT
*
13129854 ATATAAATTTT
1 -T-TATATTTT
*
13129865 TAATATTTT
1 TTATATTTT
13129874 TTATAATTTT
1 TTAT-ATTTT
13129884 TTAATATTTT
1 TT-ATATTTT
*
13129894 TAATATTTT
1 TTATATTTT
13129903 T
1 T
13129904 ATTATAATTT
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
9 21 0.37
10 23 0.40
11 13 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTATATTTT
Found at i:13129850 original size:20 final size:21
Alignment explanation
Indices: 13129827--13129893 Score: 104
Period size: 20 Copynumber: 3.3 Consensus size: 21
13129817 GAAAAAAATT
13129827 ATATTTTATTATAAATTTTT-
1 ATATTTTATTATAAATTTTTA
13129847 ATATTTTA-TATAAATTTTTA
1 ATATTTTATTATAAATTTTTA
*
13129867 ATATTTT-TTATAATTTTTTA
1 ATATTTTATTATAAATTTTTA
13129887 ATATTTT
1 ATATTTT
13129894 TAATATTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
19 11 0.25
20 33 0.75
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
ATATTTTATTATAAATTTTTA
Found at i:13129860 original size:19 final size:19
Alignment explanation
Indices: 13129825--13129905 Score: 94
Period size: 20 Copynumber: 4.2 Consensus size: 19
13129815 TAGAAAAAAA
13129825 TTATATTTTATTATAAATTT
1 TTATATTTTA-TATAAATTT
13129845 TTATATTTTATATAAATTT
1 TTATATTTTATATAAATTT
* *
13129864 TTAATATTTTTTATAATTTT
1 TT-ATATTTTATATAAATTT
*
13129884 TTAATATTTT-TA-ATATTT
1 TT-ATATTTTATATAAATTT
13129902 TTAT
1 TTAT
13129906 TATAATTTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
17 2 0.04
18 6 0.11
19 13 0.23
20 35 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATATTTTATATAAATTT
Found at i:13129872 original size:9 final size:9
Alignment explanation
Indices: 13129841--13129904 Score: 67
Period size: 9 Copynumber: 6.8 Consensus size: 9
13129831 TTTATTATAA
13129841 ATTTTT-AT
1 ATTTTTAAT
*
13129849 ATTTTATATAA
1 ATTTT-TA-AT
13129860 ATTTTTAAT
1 ATTTTTAAT
*
13129869 ATTTTTTAT
1 ATTTTTAAT
13129878 AATTTTTTAAT
1 -A-TTTTTAAT
13129889 ATTTTTAAT
1 ATTTTTAAT
13129898 ATTTTTA
1 ATTTTTA
13129905 TTATAATTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
8 5 0.11
9 25 0.53
10 4 0.09
11 13 0.28
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:13129875 original size:29 final size:29
Alignment explanation
Indices: 13129842--13129913 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 29
13129832 TTATTATAAA
13129842 TTTTTAT-ATTTTATATAA-ATTTTTAATAT
1 TTTTTATAATTTT-T-TAATATTTTTAATAT
13129871 TTTTTATAATTTTTTAATATTTTTAATATT
1 TTTTTATAATTTTTTAATATTTTTAATA-T
13129901 TTTATTATAATTT
1 TTT-TTATAATTT
13129914 ATTATGATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
28 3 0.08
29 18 0.46
30 9 0.23
31 9 0.23
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (29 bp):
TTTTTATAATTTTTTAATATTTTTAATAT
Found at i:13129927 original size:13 final size:11
Alignment explanation
Indices: 13129824--13129929 Score: 63
Period size: 10 Copynumber: 10.3 Consensus size: 11
13129814 TTAGAAAAAA
13129824 ATTAT-ATTTT
1 ATTATAATTTT
*
13129834 ATTATAAATTT
1 ATTATAATTTT
13129845 -TTAT-ATTTT
1 ATTATAATTTT
*
13129854 A-TATAAATTT
1 ATTATAATTTT
13129864 -TTA-ATATTTT
1 ATTATA-ATTTT
13129874 -TTATAATTTT
1 ATTATAATTTT
13129884 -TTA-ATATTTT
1 ATTATA-ATTTT
* *
13129894 -TAATATTTTT
1 ATTATAATTTT
13129904 ATTATAA-TTT
1 ATTATAATTTT
13129914 ATTATGATATTTT
1 ATTAT-A-ATTTT
13129927 ATT
1 ATT
13129930 GGAAAAATGA
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
9 9 0.12
10 49 0.64
11 11 0.14
12 1 0.01
13 6 0.08
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (11 bp):
ATTATAATTTT
Found at i:13131028 original size:118 final size:118
Alignment explanation
Indices: 13130818--13131044 Score: 427
Period size: 118 Copynumber: 1.9 Consensus size: 118
13130808 AGAGTTTAAC
13130818 TAAAAGATTATTTCTCAAATTTGACTGAAAATAGGAGCCATACTTAACAGAAACAATTTTAAACG
1 TAAAAGATTATTTCTCAAATTTGACTGAAAATAGGAGCCATACTTAACAGAAACAATTTTAAACG
*
13130883 AAAAATACAACCTAAAACCTTATAACGCTCTCTAATCTAATTTTAAACAATTT
66 AAAAATACAACCTAAAACCTTACAACGCTCTCTAATCTAATTTTAAACAATTT
*
13130936 TAAAAGATTATTTCTCAAATTTGACTGAAAATAGGAGCCATACTTAACAGAAACAATTTTAAATG
1 TAAAAGATTATTTCTCAAATTTGACTGAAAATAGGAGCCATACTTAACAGAAACAATTTTAAACG
*
13131001 AAAAATACAACCTAAAACCTTGCAACGCTCTCTAATCTAATTTT
66 AAAAATACAACCTAAAACCTTACAACGCTCTCTAATCTAATTTT
13131045 TGCATGAGGT
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 106 1.00
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.30
Consensus pattern (118 bp):
TAAAAGATTATTTCTCAAATTTGACTGAAAATAGGAGCCATACTTAACAGAAACAATTTTAAACG
AAAAATACAACCTAAAACCTTACAACGCTCTCTAATCTAATTTTAAACAATTT
Found at i:13131951 original size:47 final size:47
Alignment explanation
Indices: 13131882--13131971 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
13131872 TGTTGCTAGG
13131882 AATGAAGTGGTCGGTGTTTGGATAGGAGGAAAGTGAAAGAAAACGAT
1 AATGAAGTGGTCGGTGTTTGGATAGGAGGAAAGTGAAAGAAAACGAT
* *
13131929 AATGAAGTGGTGGGTGTTTGGATGGGAGGAAAGTGAAAGAAAA
1 AATGAAGTGGTCGGTGTTTGGATAGGAGGAAAGTGAAAGAAAA
13131972 TGGTGCGACG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.38, C:0.02, G:0.39, T:0.21
Consensus pattern (47 bp):
AATGAAGTGGTCGGTGTTTGGATAGGAGGAAAGTGAAAGAAAACGAT
Found at i:13132404 original size:3 final size:3
Alignment explanation
Indices: 13132396--13132423 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
13132386 GTGTGTATAT
13132396 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
13132424 GTAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:13132567 original size:6 final size:7
Alignment explanation
Indices: 13132549--13132573 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13132539 TAAGATGTAG
13132549 TAAAAAA
1 TAAAAAA
13132556 TAAAAAA
1 TAAAAAA
13132563 TAAAAAA
1 TAAAAAA
13132570 TAAA
1 TAAA
13132574 TTATATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAAAAA
Found at i:13134026 original size:29 final size:30
Alignment explanation
Indices: 13133993--13134072 Score: 103
Period size: 29 Copynumber: 2.7 Consensus size: 30
13133983 ATTTTATCTC
13133993 TTTCAAA-TATTTTAACATTTTTTAATTTA
1 TTTCAAATTATTTTAACATTTTTTAATTTA
* * *
13134022 TTTCAAATTATTTCAATA-TTGTTAATTTA
1 TTTCAAATTATTTTAACATTTTTTAATTTA
13134051 TTT-AAATTTATTTTAACATTTT
1 TTTCAAA-TTATTTTAACATTTT
13134073 AATTCATATA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
28 3 0.07
29 29 0.69
30 10 0.24
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.59
Consensus pattern (30 bp):
TTTCAAATTATTTTAACATTTTTTAATTTA
Found at i:13136779 original size:38 final size:38
Alignment explanation
Indices: 13136721--13136797 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
13136711 GCTTGGTGGG
* *
13136721 GGAGCGTTGGAGTGATTTTAGGAGGAAAATATGGGATT
1 GGAGCGTTGGAGTGACTTTAGGAGGAAAATATAGGATT
*
13136759 GGAGTGTTGGAGTGACTTTAGGAGGAAAATATAGGATT
1 GGAGCGTTGGAGTGACTTTAGGAGGAAAATATAGGATT
13136797 G
1 G
13136798 TAGAGTTATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.03, G:0.39, T:0.29
Consensus pattern (38 bp):
GGAGCGTTGGAGTGACTTTAGGAGGAAAATATAGGATT
Found at i:13139548 original size:46 final size:45
Alignment explanation
Indices: 13139498--13139855 Score: 423
Period size: 46 Copynumber: 8.3 Consensus size: 45
13139488 TGACAAGTGG
** * *
13139498 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAAGTGAC
*
13139544 AAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGAC
*
13139590 AAAGTGAT-A-----AG--T-GCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
*
13139626 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGAC
13139672 AAAGTGATAA---GT-GC-TA--T--ACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
* *
13139708 AAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAAGTGAG
1 AAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAAGTGAC
*
13139754 AAAGTGATAAGTGGTAGCCTTAGCTACTCTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAAGTGAC
* *
13139800 AAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
13139844 -AAGTGATAAGTG
1 AAAGTGATAAGTG
13139856 ATCATATGTA
Statistics
Matches: 273, Mismatches: 18, Indels: 45
0.81 0.05 0.13
Matches are distributed among these distances:
36 58 0.21
37 2 0.01
38 1 0.00
39 1 0.00
40 5 0.02
41 1 0.00
42 6 0.02
43 14 0.05
44 6 0.02
45 21 0.08
46 156 0.57
47 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
Found at i:13139607 original size:36 final size:36
Alignment explanation
Indices: 13139566--13139720 Score: 184
Period size: 36 Copynumber: 4.0 Consensus size: 36
13139556 GGTAGCATTA
13139566 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
13139602 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
13139647 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
13139684 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
13139720 G
1 G
13139721 TTAGCCTTAG
Statistics
Matches: 103, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
36 65 0.63
37 2 0.02
40 2 0.02
42 2 0.02
45 2 0.02
46 30 0.29
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:13139662 original size:82 final size:81
Alignment explanation
Indices: 13139520--13139855 Score: 469
Period size: 82 Copynumber: 4.0 Consensus size: 81
13139510 AATAGCTTCG
*
13139520 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAA
13139585 GTGAAAAAGTGATAAGT
65 GTGAAAAAGTGATAAGT
*
13139602 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAA
13139667 GTGAAAAAGTGATAAGT
65 GTGAAAAAGTGATAAGT
* *
13139684 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAA
*
13139749 GTGAGAAAGTGATAAGTGGT
65 GTGAAAAAGTGATAA---GT
*
13139769 AGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCT
1 -G-C-TA-C-A--CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCT
* *
13139834 GATC-AG-GGACAAGTGATAAGT
59 GATCAAGTGAAAAAGTGATAAGT
13139855 G
1 G
13139856 ATCATATGTA
Statistics
Matches: 230, Mismatches: 13, Indels: 19
0.88 0.05 0.07
Matches are distributed among these distances:
82 153 0.67
83 1 0.00
85 3 0.01
86 3 0.01
87 1 0.00
88 2 0.01
89 10 0.04
90 3 0.01
91 20 0.09
92 34 0.15
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (81 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAG
TGAAAAAGTGATAAGT
Found at i:13139664 original size:128 final size:126
Alignment explanation
Indices: 13139498--13139855 Score: 412
Period size: 128 Copynumber: 2.8 Consensus size: 126
13139488 TGACAAGTGG
** ** *
13139498 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCA
1 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-
13139563 TTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGAC
65 -TAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGAC
*
13139626 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAA---GT-GCT
1 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCT
*
13139687 A--T--ACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCA
66 AGCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T-GCTACACTTATCTGATCA
* *
13139748 AGTGAG
121 AGAGAC
* *
13139754 AAAGTGATAAGTGGTAGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCC
1 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAG-C
* *
13139819 TAGCTACACTTATCTGATC-AG-GGACAAGTGATAAGTG
65 TAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTG
13139856 ATCATATGTA
Statistics
Matches: 196, Mismatches: 15, Indels: 41
0.78 0.06 0.16
Matches are distributed among these distances:
118 26 0.13
119 1 0.01
120 1 0.01
122 2 0.01
124 4 0.02
125 3 0.02
126 1 0.01
127 1 0.01
128 125 0.64
129 2 0.01
131 2 0.01
132 1 0.01
133 3 0.02
134 1 0.01
135 9 0.05
136 2 0.01
137 12 0.06
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (126 bp):
AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCT
AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGAC
Found at i:13147895 original size:29 final size:29
Alignment explanation
Indices: 13147853--13147911 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
13147843 TTGATTGTCT
13147853 TAATATTTATTATGTAGGATTTTTAATTA
1 TAATATTTATTATGTAGGATTTTTAATTA
13147882 TAATATTTATTATGTAGGATTTTTAATTA
1 TAATATTTATTATGTAGGATTTTTAATTA
13147911 T
1 T
13147912 GTTTCTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (29 bp):
TAATATTTATTATGTAGGATTTTTAATTA
Found at i:13147912 original size:17 final size:17
Alignment explanation
Indices: 13147861--13147913 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
13147851 CTTAATATTT
13147861 ATTATGTAGGATTTTTA
1 ATTATGTAGGATTTTTA
*
13147878 ATTA--TA--ATATTT-
1 ATTATGTAGGATTTTTA
13147890 ATTATGTAGGATTTTTA
1 ATTATGTAGGATTTTTA
13147907 ATTATGT
1 ATTATGT
13147914 TTCTTTTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
12 4 0.14
13 5 0.17
14 2 0.07
15 2 0.07
16 5 0.17
17 11 0.38
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (17 bp):
ATTATGTAGGATTTTTA
Found at i:13152642 original size:20 final size:22
Alignment explanation
Indices: 13152602--13152642 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
13152592 TCTCTTTACT
*
13152602 TTTAGTTGATATTCTATTATTA
1 TTTAGTTGATATTCTAATATTA
13152624 TTTAGTTG-T-TTCTAATATT
1 TTTAGTTGATATTCTAATATT
13152643 TTATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 1 0.06
22 8 0.44
ACGTcount: A:0.24, C:0.05, G:0.10, T:0.61
Consensus pattern (22 bp):
TTTAGTTGATATTCTAATATTA
Found at i:13161911 original size:79 final size:78
Alignment explanation
Indices: 13161809--13162031 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
13161799 GCTCCTCGTT
* *
13161809 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
13161874 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
13161889 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
13161953 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
13161967 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
13162030 GA
63 GA
13162032 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:13161926 original size:39 final size:40
Alignment explanation
Indices: 13161809--13162031 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
13161799 GCTCCTCGTT
* *
13161809 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
13161849 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
13161889 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
13161928 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
13161967 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
13162008 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
13162032 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:13168178 original size:13 final size:13
Alignment explanation
Indices: 13168160--13168186 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13168150 AAGTGAAGGG
13168160 ATCCACTTGCACA
1 ATCCACTTGCACA
13168173 ATCCACTTGCACA
1 ATCCACTTGCACA
13168186 A
1 A
13168187 GTATAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.37, G:0.07, T:0.22
Consensus pattern (13 bp):
ATCCACTTGCACA
Found at i:13168768 original size:44 final size:44
Alignment explanation
Indices: 13168680--13168770 Score: 121
Period size: 44 Copynumber: 2.1 Consensus size: 44
13168670 ATAAATGTAA
* * * * *
13168680 ATTATAATTATAATTATTTTAAATGTGTAATTATCACAATTTCT
1 ATTATAATTATAATTATTTGAAATGTATAATTATAAAAAATTCT
13168724 ATTA-AATTATAATTATTGTGAAATGTATAATTATAAAAAATTCT
1 ATTATAATTATAATTATT-TGAAATGTATAATTATAAAAAATTCT
13168768 ATT
1 ATT
13168771 TTATTCCAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
43 13 0.32
44 28 0.68
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.47
Consensus pattern (44 bp):
ATTATAATTATAATTATTTGAAATGTATAATTATAAAAAATTCT
Found at i:13174746 original size:16 final size:17
Alignment explanation
Indices: 13174715--13174747 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13174705 TAAACTTTTA
13174715 AATATATTATAAATACT
1 AATATATTATAAATACT
*
13174732 AATAT-TTATATATACT
1 AATATATTATAAATACT
13174748 TTTCAAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATATTATAAATACT
Found at i:13174958 original size:26 final size:26
Alignment explanation
Indices: 13174929--13174979 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13174919 GTAGTGACTG
*
13174929 ATTTGATCAACTAATTCTAATAACTA
1 ATTTGACCAACTAATTCTAATAACTA
* *
13174955 ATTTGACCAACTGATTCTATTAACT
1 ATTTGACCAACTAATTCTAATAACT
13174980 GTTTATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (26 bp):
ATTTGACCAACTAATTCTAATAACTA
Found at i:13177645 original size:382 final size:382
Alignment explanation
Indices: 13176939--13177702 Score: 1519
Period size: 382 Copynumber: 2.0 Consensus size: 382
13176929 ATGGATACGG
13176939 TCTCCGCATCTTGGGTCCGCAGCAACCTGGCATGGTGCTTCTCTCCCAGGTGTATCTTTATACTC
1 TCTCCGCATCTTGGGTCCGCAGCAACCTGGCATGGTGCTTCTCTCCCAGGTGTATCTTTATACTC
13177004 GTCACTTCTAATATTAATACTATACTTCTACTTACTCGCTTGCTTAATTCAAAAGTATCATGCTT
66 GTCACTTCTAATATTAATACTATACTTCTACTTACTCGCTTGCTTAATTCAAAAGTATCATGCTT
13177069 GAATTTGATGCATATCTAATCTACATCTCAGGAGTTGATTGGCGCTCTACTTGCATGCTCTTTAT
131 GAATTTGATGCATATCTAATCTACATCTCAGGAGTTGATTGGCGCTCTACTTGCATGCTCTTTAT
13177134 TTTGTTTGTTTCCAATCTCTAATAGAGGTCTTAAACATCTGCCAACCATCAACTTTGATCAATTG
196 TTTGTTTGTTTCCAATCTCTAATAGAGGTCTTAAACATCTGCCAACCATCAACTTTGATCAATTG
13177199 TTTGCGTATTTCAGCTCTCTTTTGCTATCGTCTTGCTATCAATCTCATTCTCGTTATTAATTTCT
261 TTTGCGTATTTCAGCTCTCTTTTGCTATCGTCTTGCTATCAATCTCATTCTCGTTATTAATTTCT
13177264 AAGTTGCTGTTGTGCATCTTTGGCTTCTCTTTTTCAATCTGGCGCAGTTACCCTGTT
326 AAGTTGCTGTTGTGCATCTTTGGCTTCTCTTTTTCAATCTGGCGCAGTTACCCTGTT
13177321 TCTCCGCATCTTGGGTCCGCAGCAACCTGGCATGGTGCTTCTCTCCCAGGTGTATCTTTATACTC
1 TCTCCGCATCTTGGGTCCGCAGCAACCTGGCATGGTGCTTCTCTCCCAGGTGTATCTTTATACTC
13177386 GTCACTTCTAATATTAATACTATACTTCTACTTACTCGCTTGCTTAATTCAAAAGTATCATGCTT
66 GTCACTTCTAATATTAATACTATACTTCTACTTACTCGCTTGCTTAATTCAAAAGTATCATGCTT
13177451 GAATTTGATGCATATCTAATCTACATCTCAGGAGTTGATTGGCGCTCTACTTGCATGCTCTTTAT
131 GAATTTGATGCATATCTAATCTACATCTCAGGAGTTGATTGGCGCTCTACTTGCATGCTCTTTAT
*
13177516 TTTGTTTGTTTCCAATCTCTAATAGAGGTCTTAAACATCTGCCAACCATCAACTTTGATCAGTTG
196 TTTGTTTGTTTCCAATCTCTAATAGAGGTCTTAAACATCTGCCAACCATCAACTTTGATCAATTG
13177581 TTTGCGTATTTCAGCTCTCTTTTGCTATCGTCTTGCTATCAATCTCATTCTCGTTATTAATTTCT
261 TTTGCGTATTTCAGCTCTCTTTTGCTATCGTCTTGCTATCAATCTCATTCTCGTTATTAATTTCT
13177646 AAGTTGCTGTTGTGCATCTTTGGCTTCTCTTTTTCAATCTGGCGCAGTTACCCTGTT
326 AAGTTGCTGTTGTGCATCTTTGGCTTCTCTTTTTCAATCTGGCGCAGTTACCCTGTT
13177703 CTTCGCCACT
Statistics
Matches: 381, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
382 381 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (382 bp):
TCTCCGCATCTTGGGTCCGCAGCAACCTGGCATGGTGCTTCTCTCCCAGGTGTATCTTTATACTC
GTCACTTCTAATATTAATACTATACTTCTACTTACTCGCTTGCTTAATTCAAAAGTATCATGCTT
GAATTTGATGCATATCTAATCTACATCTCAGGAGTTGATTGGCGCTCTACTTGCATGCTCTTTAT
TTTGTTTGTTTCCAATCTCTAATAGAGGTCTTAAACATCTGCCAACCATCAACTTTGATCAATTG
TTTGCGTATTTCAGCTCTCTTTTGCTATCGTCTTGCTATCAATCTCATTCTCGTTATTAATTTCT
AAGTTGCTGTTGTGCATCTTTGGCTTCTCTTTTTCAATCTGGCGCAGTTACCCTGTT
Found at i:13179251 original size:25 final size:24
Alignment explanation
Indices: 13179223--13179270 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
13179213 GCTATGATAT
* *
13179223 TAAATATATTTTATTTTAGTTAAAG
1 TAAATA-ATTTAAATTTAGTTAAAG
*
13179248 TAAATAGTTTAAATTTAGTTAAA
1 TAAATAATTTAAATTTAGTTAAA
13179271 CCTTTAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (24 bp):
TAAATAATTTAAATTTAGTTAAAG
Found at i:13179502 original size:21 final size:20
Alignment explanation
Indices: 13179464--13179502 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
13179454 TATTATATTA
13179464 TAAAAATCAATTATATATGT
1 TAAAAATCAATTATATATGT
13179484 TAAATAAT-AATTAATATAT
1 TAAA-AATCAATT-ATATAT
13179503 ACTTATATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (20 bp):
TAAAAATCAATTATATATGT
Found at i:13185291 original size:18 final size:18
Alignment explanation
Indices: 13185268--13185310 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
13185258 AATTTATCTG
**
13185268 AAAATCCTTGAAGGATTA
1 AAAATCCTAAAAGGATTA
13185286 AAAATCCTAAAAGGATTA
1 AAAATCCTAAAAGGATTA
13185304 AAAATCC
1 AAAATCC
13185311 CCTAAGGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.51, C:0.14, G:0.12, T:0.23
Consensus pattern (18 bp):
AAAATCCTAAAAGGATTA
Found at i:13187195 original size:26 final size:25
Alignment explanation
Indices: 13187160--13187209 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
13187150 CTCAAAAAAG
*
13187160 AAAAAAAACTCCATCATGAATCTAC
1 AAAAAAAACTCCACCATGAATCTAC
*
13187185 AAAAACAAACTCCACCGTGAATCTA
1 AAAAA-AAACTCCACCATGAATCTA
13187210 TTTAAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.50, C:0.26, G:0.06, T:0.18
Consensus pattern (25 bp):
AAAAAAAACTCCACCATGAATCTAC
Found at i:13195721 original size:18 final size:17
Alignment explanation
Indices: 13195700--13195734 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13195690 TTATTATTAA
*
13195700 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
13195718 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13195735 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13195809 original size:66 final size:66
Alignment explanation
Indices: 13195739--13195930 Score: 187
Period size: 66 Copynumber: 3.1 Consensus size: 66
13195729 TAAAATTCTT
13195739 AATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTG
1 AATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTG
13195804 A
66 A
* * * **
13195805 AATAAT---TATTATTAAAT-ATATTT--T--AAT--TAAAATAT-ATA--ATTTAATAAAATTC
1 AATAATCAATATTCTTATATGA-ATTTACTAAAATCATAATATATGATACTATAAAATAAAATT-
*
13195857 T-T
64 TGA
* * *
13195859 AATAATCAATATTCTTATATGAATTTACTAAAATCATAATGTATGATACTATAGAATATAATTTG
1 AATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTG
13195924 A
66 A
13195925 AATAAT
1 AATAAT
13195931 TTTTATTAAA
Statistics
Matches: 96, Mismatches: 14, Indels: 32
0.68 0.10 0.23
Matches are distributed among these distances:
54 17 0.18
55 1 0.01
56 3 0.03
57 20 0.21
58 1 0.01
59 4 0.04
61 4 0.04
62 1 0.01
63 19 0.20
64 3 0.03
65 1 0.01
66 22 0.23
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (66 bp):
AATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTG
A
Found at i:13195841 original size:18 final size:17
Alignment explanation
Indices: 13195820--13195854 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13195810 TTATTATTAA
*
13195820 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
13195838 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13195855 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13195967 original size:18 final size:15
Alignment explanation
Indices: 13195924--13195974 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
13195914 ATATAATTTG
* *
13195924 AAATA-ATTTTTATT
1 AAATATATTTTAATA
13195938 AAATATATTTTAATTA
1 AAATATATTTTAA-TA
13195954 AAATATATGATTTAATA
1 AAATATAT--TTTAATA
13195971 AAAT
1 AAAT
13195975 TTAAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 5 0.16
15 6 0.19
16 9 0.29
17 6 0.19
18 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
AAATATATTTTAATA
Found at i:13195974 original size:17 final size:16
Alignment explanation
Indices: 13195924--13195974 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
13195914 ATATAATTTG
*
13195924 AAATA-ATTTTTATT-
1 AAATATATTTTAATTA
13195938 AAATATATTTTAATTA
1 AAATATATTTTAATTA
13195954 AAATATATGATTTAA-TA
1 AAATATAT--TTTAATTA
13195971 AAAT
1 AAAT
13195975 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 5 0.16
15 8 0.25
16 8 0.25
17 6 0.19
18 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
AAATATATTTTAATTA
Found at i:13195984 original size:120 final size:120
Alignment explanation
Indices: 13195686--13195975 Score: 535
Period size: 120 Copynumber: 2.4 Consensus size: 120
13195676 ATATTTTAAC
13195686 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
13195751 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTGAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTGAA
13195806 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
* * *
13195871 TCTTATATGAATTTACTAAAATCATAATGTATGATACTATAGAATATAATTTGAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTGAA
* *
13195926 ATAATTTTTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
13195976 TAAAATAATT
Statistics
Matches: 165, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 165 1.00
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATAAAATTTGAA
Found at i:13196059 original size:15 final size:15
Alignment explanation
Indices: 13196016--13196069 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
13196006 TATGAATTTG
13196016 TATAATTTAA-AATA
1 TATAATTTAATAATA
* *
13196030 -ATTA-TTATTAA-A
1 TATAATTTAATAATA
13196042 TATAATTTAATAATA
1 TATAATTTAATAATA
*
13196057 TATAATTTCATAA
1 TATAATTTAATAA
13196070 AACTCTTACT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
12 4 0.13
13 8 0.26
14 6 0.19
15 13 0.42
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TATAATTTAATAATA
Found at i:13196086 original size:44 final size:44
Alignment explanation
Indices: 13196038--13196177 Score: 112
Period size: 44 Copynumber: 3.1 Consensus size: 44
13196028 TAATTATTAT
13196038 TAAATATAATTTAATAATATATAATTTCATAAAACTCTTACTAA
1 TAAATATAATTTAATAATATATAATTTCATAAAACTCTTACTAA
* * * * *
13196082 TAAAT-T-TTCTTATATGAATTTGTATAA-TT--TAAAA-TAATTATTAT
1 TAAATATAAT-TTA-AT-AA--TATATAATTTCATAAAACT-CTTACTAA
13196126 TAAATATAATTTAATAATAATATATAATTTCATAAAACTCTTACTAA
1 TAAATATAA-TT--TAATAATATATAATTTCATAAAACTCTTACTAA
13196173 TAAAT
1 TAAAT
13196178 TTTCTTATAT
Statistics
Matches: 71, Mismatches: 10, Indels: 27
0.66 0.09 0.25
Matches are distributed among these distances:
42 1 0.01
43 5 0.07
44 28 0.39
45 5 0.07
46 5 0.07
47 24 0.34
48 3 0.04
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.44
Consensus pattern (44 bp):
TAAATATAATTTAATAATATATAATTTCATAAAACTCTTACTAA
Found at i:13196161 original size:91 final size:91
Alignment explanation
Indices: 13195987--13196374 Score: 694
Period size: 91 Copynumber: 4.3 Consensus size: 91
13195977 AAAATAATTA
13195987 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAA-TT--
1 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
13196049 TAATAATATATAATTTCATAAAACTC
66 TAATAATATATAATTTCATAAAACTC
13196075 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
1 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
13196140 TAATAATATATAATTTCATAAAACTC
66 TAATAATATATAATTTCATAAAACTC
*
13196166 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAAATATTATTAAATATAATTTAA
1 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
*
13196231 TAATAATATATAATTTCATAAAATTC
66 TAATAATATATAATTTCATAAAACTC
13196257 TTA-TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
1 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
* *
13196321 TAATGATATATAATTTCATAAAATTC
66 TAATAATATATAATTTCATAAAACTC
* *
13196347 TTAATAATAAATATTCTTATATGAATTT
1 TTACTAATAAATTTTCTTATATGAATTT
13196375 ACTAAAATCA
Statistics
Matches: 291, Mismatches: 5, Indels: 5
0.97 0.02 0.02
Matches are distributed among these distances:
88 60 0.21
89 2 0.01
90 88 0.30
91 141 0.48
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (91 bp):
TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
TAATAATATATAATTTCATAAAACTC
Found at i:13196332 original size:181 final size:179
Alignment explanation
Indices: 13195987--13196374 Score: 688
Period size: 181 Copynumber: 2.2 Consensus size: 179
13195977 AAAATAATTA
*
13195987 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAA
1 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAAATATTATTAAATATAATTTAA
13196052 TAATATATAATTTCATAAAACTCTTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAAT
66 TAATATATAATTTCATAAAACTCTTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAAT
13196117 AATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAACTC
131 AATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAACTC
13196166 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAAATATTATTAAATATAATTTAA
1 TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAAATATTATTAAATATAA-TT--
*
13196231 TAATAATATATAATTTCATAAAATTCTTA-TAATAAATTTTCTTATATGAATTTGTATAATTTAA
63 TAATAATATATAATTTCATAAAACTCTTACTAATAAATTTTCTTATATGAATTTGTATAATTTAA
* *
13196295 AATAATTATTATTAAATATAATTTAATAATGATATATAATTTCATAAAATTC
128 AATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAACTC
* *
13196347 TTAATAATAAATATTCTTATATGAATTT
1 TTACTAATAAATTTTCTTATATGAATTT
13196375 ACTAAAATCA
Statistics
Matches: 200, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
179 59 0.29
180 2 0.01
181 111 0.56
182 28 0.14
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (179 bp):
TTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAAATATTATTAAATATAATTTAA
TAATATATAATTTCATAAAACTCTTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAAT
AATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAACTC
Found at i:13207085 original size:16 final size:15
Alignment explanation
Indices: 13207048--13207096 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
13207038 TGAAATTTAA
13207048 AAATAAAGAATAAAT
1 AAATAAAGAATAAAT
** *
13207063 ATTTAAAGTAATAACT
1 AAATAAAG-AATAAAT
13207079 AAATAAAGAA-AAAT
1 AAATAAAGAATAAAT
13207093 AAAT
1 AAAT
13207097 TAGGTGGAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 7 0.26
15 8 0.30
16 12 0.44
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.24
Consensus pattern (15 bp):
AAATAAAGAATAAAT
Found at i:13213423 original size:22 final size:22
Alignment explanation
Indices: 13213398--13213472 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
13213388 TGTTGAAGAA
13213398 ATCGCGATATCCTCATTTAAAT
1 ATCGCGATATCCTCATTTAAAT
* * ** * *
13213420 ATCGCGATTTCATTGTATAAGAA
1 ATCGCGATATCCTCATTTAA-AT
* * *
13213443 ATTGCGATATCCTCCTTTAGAT
1 ATCGCGATATCCTCATTTAAAT
13213465 ATCGCGAT
1 ATCGCGAT
13213473 TTCACTGTAT
Statistics
Matches: 37, Mismatches: 15, Indels: 2
0.69 0.28 0.04
Matches are distributed among these distances:
22 23 0.62
23 14 0.38
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (22 bp):
ATCGCGATATCCTCATTTAAAT
Found at i:13213444 original size:45 final size:45
Alignment explanation
Indices: 13213393--13213484 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
13213383 GAATATGTTG
*
13213393 AAGAAATCGCGATATCCTCATTTAAATATCGCGATTTCATTGTAT
1 AAGAAATCGCGATATCCTCATTTAAATATCGCGATTTCACTGTAT
* * *
13213438 AAGAAATTGCGATATCCTCCTTTAGATATCGCGATTTCACTGTAT
1 AAGAAATCGCGATATCCTCATTTAAATATCGCGATTTCACTGTAT
13213483 AA
1 AA
13213485 CTCCCCAAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (45 bp):
AAGAAATCGCGATATCCTCATTTAAATATCGCGATTTCACTGTAT
Found at i:13228972 original size:85 final size:85
Alignment explanation
Indices: 13228824--13228989 Score: 235
Period size: 85 Copynumber: 2.0 Consensus size: 85
13228814 TTGCAATTTG
* * * * * *
13228824 ATTAAATTTCAGTTTTGGTCTGTCTAAAATTTCTATAATTTAAATTTAATTATTATTCTTTAATT
1 ATTAAATTTCAATATTGGTCAGTCTAAAATGTCTATAATTTAAATTTAATTATTATACATTAATT
13228889 TTTAACATAAATTGGTTTCT
66 TTTAACATAAATTGGTTTCT
* * *
13228909 ATTAAATTTTAATATTGGTCAGTCTAAAATGTCTA-AATTTTAATTTTAATTTTTATACATTAAT
1 ATTAAATTTCAATATTGGTCAGTCTAAAATGTCTATAA-TTTAAATTTAATTATTATACATTAAT
13228973 TTTTAACATAAATTGGT
65 TTTTAACATAAATTGGT
13228990 CCCTATATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 2 0.03
85 69 0.97
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.51
Consensus pattern (85 bp):
ATTAAATTTCAATATTGGTCAGTCTAAAATGTCTATAATTTAAATTTAATTATTATACATTAATT
TTTAACATAAATTGGTTTCT
Found at i:13228981 original size:13 final size:14
Alignment explanation
Indices: 13228954--13228986 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13228944 AATTTTAATT
13228954 TTAATTTTTATACA
1 TTAATTTTTATACA
13228968 TTAATTTTTA-ACA
1 TTAATTTTTATACA
*
13228981 TAAATT
1 TTAATT
13228987 GGTCCCTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAATTTTTATACA
Found at i:13230266 original size:23 final size:21
Alignment explanation
Indices: 13230232--13230273 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
13230222 TTTTATTCAA
13230232 AAAACTATAATAACAAATTATGC
1 AAAACTATAAT-AC-AATTATGC
13230255 AAAA-TATAAATACAATTAT
1 AAAACTAT-AATACAATTAT
13230274 CGACATGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAACTATAATACAATTATGC
Done.