Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 49 of 126
Found at i:14236875 original size:7 final size:8
Alignment explanation
Indices: 14236856--14236887 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
14236846 TCATGAATTT
14236856 TTTTTCAA
1 TTTTTCAA
14236864 TTTTTCAA
1 TTTTTCAA
14236872 -TTTTCAA
1 TTTTTCAA
14236879 TTTTTCAA
1 TTTTTCAA
14236887 T
1 T
14236888 GCATCTCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (8 bp):
TTTTTCAA
Found at i:14236877 original size:15 final size:15
Alignment explanation
Indices: 14236857--14236887 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14236847 CATGAATTTT
14236857 TTTTCAATTTTTCAA
1 TTTTCAATTTTTCAA
14236872 TTTTCAATTTTTCAA
1 TTTTCAATTTTTCAA
14236887 T
1 T
14236888 GCATCTCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTCAATTTTTCAA
Found at i:14243099 original size:42 final size:42
Alignment explanation
Indices: 14243070--14243158 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
14243060 GCTGTGTGCT
*
14243070 AGGCCATGTAACTCTTGAAATTGCCTCACACACCCATGTGTC
1 AGGCCATGTAACTCTCGAAATTGCCTCACACACCCATGTGTC
* * **
14243112 GGGCCATGTAACTCTCGAAATTGCCTTACATGCCCATGTGTC
1 AGGCCATGTAACTCTCGAAATTGCCTCACACACCCATGTGTC
14243154 AGGCC
1 AGGCC
14243159 GTGTGTTAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (42 bp):
AGGCCATGTAACTCTCGAAATTGCCTCACACACCCATGTGTC
Found at i:14249496 original size:50 final size:50
Alignment explanation
Indices: 14249315--14249513 Score: 195
Period size: 51 Copynumber: 3.9 Consensus size: 50
14249305 ATTAATGACA
* * * * *
14249315 CCGGTTCACATAGTAGCCTGCATATAATACTACAGATGTGACCATCACTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA-TAT
* * * * * *
14249366 CCGATACATGTATTAGCCTGCACATAGTACTACACACGTGATCGAAGC-TAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-C-CATCATAT
* * * *
14249417 CCGGTACGCATAGTAGCCTGCACAGAGTACTACACATGCGACCTATCAT-T
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCATAT
* *
14249467 CTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCA
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA
14249514 CTTTCACTTT
Statistics
Matches: 117, Mismatches: 27, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
49 4 0.03
50 41 0.35
51 69 0.59
52 1 0.01
53 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCATAT
Found at i:14249505 original size:101 final size:102
Alignment explanation
Indices: 14249323--14249507 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
14249313 CACCGGTTCA
* * * * * *
14249323 CATAGTAGCCTGCATATAATACTACAGATGTGACCATCACTATCCGATACATGTATTAGCCTGCA
1 CATAGTAGCCTGCACAGAATACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
14249388 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* * *
14249425 CATAGTAGCCTGCACAGAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACAGAATACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTGC
14249488 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
14249508 CCATCACTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
101 38 0.52
102 31 0.42
103 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACAGAATACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:14251715 original size:107 final size:109
Alignment explanation
Indices: 14251591--14251808 Score: 404
Period size: 107 Copynumber: 2.0 Consensus size: 109
14251581 AATGCGCATG
* *
14251591 ACACATAGTATCACAAATAGCCAATTCATTACTAATTTCACATTGTCAAAGCATTTAAT-AA-AT
1 ACACATACTATCACAAATAGCCAATTCATTACTAATTTCACATTCTCAAAGCATTTAATAAACAT
14251654 TTGCTTTTAATCACTTTTGTTCTCAACACATAATTCATATGCCA
66 TTGCTTTTAATCACTTTTGTTCTCAACACATAATTCATATGCCA
14251698 ACACATACTATCACAAATAGCCAATTCATTACTAATTTCACATTCTCAAAGCATTTAATAAACAT
1 ACACATACTATCACAAATAGCCAATTCATTACTAATTTCACATTCTCAAAGCATTTAATAAACAT
14251763 TTGCTTTTAATCACTTTTGTTCTCAACACATAATTCATATGCCA
66 TTGCTTTTAATCACTTTTGTTCTCAACACATAATTCATATGCCA
14251807 AC
1 AC
14251809 TCAAATCACT
Statistics
Matches: 107, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
107 57 0.53
108 2 0.02
109 48 0.45
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.36
Consensus pattern (109 bp):
ACACATACTATCACAAATAGCCAATTCATTACTAATTTCACATTCTCAAAGCATTTAATAAACAT
TTGCTTTTAATCACTTTTGTTCTCAACACATAATTCATATGCCA
Found at i:14252442 original size:42 final size:42
Alignment explanation
Indices: 14252361--14252443 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
14252351 TCATTTTCTC
* **
14252361 TATGCCATAGTCCAACTATGGTCTTACACATATTTACATATT
1 TATGCCATAGCCCAACTATGGTCTTACACATATGCACATATT
*
14252403 TATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 TATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
14252444 CACACCGATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 34 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (42 bp):
TATGCCATAGCCCAACTATGGTCTTACACATATGCACATATT
Found at i:14255550 original size:51 final size:50
Alignment explanation
Indices: 14255468--14255610 Score: 164
Period size: 50 Copynumber: 2.9 Consensus size: 50
14255458 TTAATGACAT
* *
14255468 CGGTTCACATAGTAG-CTGCACATAGTACTACACATGTGATCGAAGC-TATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGA-CCAAGCAT-TC
* * * *
14255518 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCAAGCATTC
* * * *
14255568 TGGTACACGTAGTAGCCTGCAAATAGTACTACACACGTGACCA
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCA
14255611 TCACTTTCAC
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
50 54 0.69
51 24 0.31
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (50 bp):
CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCAAGCATTC
Found at i:14259517 original size:43 final size:44
Alignment explanation
Indices: 14259464--14259548 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 44
14259454 GCCAATGCAA
*
14259464 TTTTCGAAGTTGGGTCACACGGCCAAGCCACGTGCCCATGTAAC
1 TTTTCGAAGTTGGGTCACACGGCCAAGCCACATGCCCATGTAAC
* *
14259508 TTTT-GAAGTTGGGTCACACGGCTAAGCCACATGCCCTTGTA
1 TTTTCGAAGTTGGGTCACACGGCCAAGCCACATGCCCATGTA
14259549 CCAGGCCATG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 34 0.89
44 4 0.11
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (44 bp):
TTTTCGAAGTTGGGTCACACGGCCAAGCCACATGCCCATGTAAC
Found at i:14266303 original size:12 final size:12
Alignment explanation
Indices: 14266288--14266365 Score: 54
Period size: 12 Copynumber: 6.2 Consensus size: 12
14266278 TTTAAAATAC
14266288 TTTTTTTAAATTTT
1 TTTTTTTAAA--TT
14266302 TTTAATTTTAAA-T
1 TTT--TTTTAAATT
*
14266315 TTTTTTTAAAAT
1 TTTTTTTAAATT
* *
14266327 TTTTTTAAAATAC
1 TTTTTTTAAAT-T
14266340 TTTTTTT-AATT
1 TTTTTTTAAATT
14266351 TTTATTTT-AATT
1 TTT-TTTTAAATT
14266363 TTT
1 TTT
14266366 AAAATAAATT
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
11 10 0.19
12 24 0.44
13 10 0.19
14 3 0.06
16 7 0.13
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTTTAAATT
Found at i:14266314 original size:29 final size:29
Alignment explanation
Indices: 14266268--14266334 Score: 95
Period size: 28 Copynumber: 2.3 Consensus size: 29
14266258 AAATATTTTT
14266268 ATTTTTTT-ATTTTAAAATACTTTTTTT-AA
1 ATTTTTTTAATTTTAAAAT--TTTTTTTAAA
14266297 ATTTTTTTAATTTT-AAATTTTTTTTAAA
1 ATTTTTTTAATTTTAAAATTTTTTTTAAA
14266325 ATTTTTTTAA
1 ATTTTTTTAA
14266335 AATACTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
27 7 0.19
28 12 0.33
29 12 0.33
30 5 0.14
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.67
Consensus pattern (29 bp):
ATTTTTTTAATTTTAAAATTTTTTTTAAA
Found at i:14273659 original size:49 final size:49
Alignment explanation
Indices: 14273557--14273659 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
14273547 GAACCAAACC
***
14273557 TTAATCATCTTTAAACCAAAATATTTTCCATCACCAAAATGTGTAGTTT
1 TTAATCATCTTTAAACCAAAATATTTTCCATCACCAAAATGTGTAGACA
14273606 TTAATCATCTTTAAACCAAAATATTTTCCATCACCAAAATGTGTTA-ACA
1 TTAATCATCTTTAAACCAAAATATTTTCCATCACCAAAATGTG-TAGACA
14273655 TTAAT
1 TTAAT
14273660 TTCATAAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
49 48 0.96
50 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (49 bp):
TTAATCATCTTTAAACCAAAATATTTTCCATCACCAAAATGTGTAGACA
Found at i:14280835 original size:22 final size:23
Alignment explanation
Indices: 14280805--14280847 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
14280795 AATATGAACA
14280805 TGTTGAATTTTAATTAATTTTAT
1 TGTTGAATTTTAATTAATTTTAT
*
14280828 TGTT-AATTTTTATTAATTTT
1 TGTTGAATTTTAATTAATTTT
14280848 GACTATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (23 bp):
TGTTGAATTTTAATTAATTTTAT
Found at i:14290947 original size:27 final size:28
Alignment explanation
Indices: 14290917--14290970 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
14290907 TCGAAATTCA
*
14290917 CACTTGAATTA-TAAAATAATT-AATTTG
1 CACTTAAATTATTAAAAT-ATTGAATTTG
14290944 CACTTAAATTATTAAAATATTGAATTT
1 CACTTAAATTATTAAAATATTGAATTT
14290971 TAATTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (28 bp):
CACTTAAATTATTAAAATATTGAATTTG
Found at i:14298005 original size:13 final size:13
Alignment explanation
Indices: 14297987--14298012 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14297977 TTGCAGCCCA
14297987 AAGCTGACCCAAT
1 AAGCTGACCCAAT
14298000 AAGCTGACCCAAT
1 AAGCTGACCCAAT
14298013 CAGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (13 bp):
AAGCTGACCCAAT
Found at i:14299029 original size:18 final size:18
Alignment explanation
Indices: 14299006--14299043 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14298996 GTAAGTTTGT
14299006 ATGTGCTATAGATAACAA
1 ATGTGCTATAGATAACAA
14299024 ATGTGCTATAGATAACAA
1 ATGTGCTATAGATAACAA
14299042 AT
1 AT
14299044 TACCAAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (18 bp):
ATGTGCTATAGATAACAA
Found at i:14302318 original size:26 final size:26
Alignment explanation
Indices: 14302289--14302343 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
14302279 TTTACAACAG
14302289 TTAAGCAATTCAAACATTTTTAAGTT
1 TTAAGCAATTCAAACATTTTTAAGTT
14302315 TTAAGCAATTCAAACATTTTTAAGTT
1 TTAAGCAATTCAAACATTTTTAAGTT
14302341 TTA
1 TTA
14302344 CTATCGGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (26 bp):
TTAAGCAATTCAAACATTTTTAAGTT
Found at i:14303865 original size:21 final size:21
Alignment explanation
Indices: 14303823--14303870 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
14303813 TACAAACGAA
* **
14303823 ACATTAAAACATACATTTCAT
1 ACATTAAAACAAACATAACAT
*
14303844 ACATTAATACAAACATAACAT
1 ACATTAAAACAAACATAACAT
*
14303865 AAATTA
1 ACATTA
14303871 TTCATTCACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (21 bp):
ACATTAAAACAAACATAACAT
Found at i:14310120 original size:35 final size:35
Alignment explanation
Indices: 14310059--14310207 Score: 115
Period size: 35 Copynumber: 4.2 Consensus size: 35
14310049 CCCTCCAAAT
* *
14310059 CACACCAGATGCTCACAACA-ACAAGTCCAATCGAAA
1 CACACCA-ATGCTCATAAGAGA-AAGTCCAATCGAAA
* *
14310095 CACACCAATGCTCAGAAGAGAAAGTCCAA-CAGAAC
1 CACACCAATGCTCATAAGAGAAAGTCCAATC-GAAA
** ** *
14310130 CACACCAATGCTCATAAGAGCTAGTCCAGCCGAAG
1 CACACCAATGCTCATAAGAGAAAGTCCAATCGAAA
** ** *
14310165 CACGTCAATGCTCATAAGAGCTAGTCC-CTCCGAAA
1 CACACCAATGCTCATAAGAGAAAGTCCAAT-CGAAA
14310200 CACACCAA
1 CACACCAA
14310208 ATAGATAGTA
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
34 1 0.01
35 84 0.89
36 9 0.10
ACGTcount: A:0.40, C:0.32, G:0.15, T:0.13
Consensus pattern (35 bp):
CACACCAATGCTCATAAGAGAAAGTCCAATCGAAA
Found at i:14312686 original size:35 final size:37
Alignment explanation
Indices: 14312646--14312717 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 37
14312636 TATTAATTAA
14312646 TTAAAT-ATTAGTTTATTAATTTT-TTA-T-TTTTATTT
1 TTAAATGA-TAGTTTATT-ATTTTATTAGTATTTTATTT
*
14312681 TTAAATGATATTTTATTATTTTATTAGTATTTTATTT
1 TTAAATGATAGTTTATTATTTTATTAGTATTTTATTT
14312718 AGTATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
34 5 0.16
35 17 0.53
36 2 0.06
37 8 0.25
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (37 bp):
TTAAATGATAGTTTATTATTTTATTAGTATTTTATTT
Found at i:14317389 original size:40 final size:40
Alignment explanation
Indices: 14317289--14317553 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
14317279 GCTCCTCGTT
* * * *
14317289 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
14317329 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
14317368 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
14317408 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
14317448 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
14317488 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
14317529 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
14317554 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:14317513 original size:80 final size:80
Alignment explanation
Indices: 14317256--14317553 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
14317246 AAATCACGTA
* ** * * *
14317256 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
14317318 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
14317334 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
14317397 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
14317414 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
14317478 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
14317494 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
14317554 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:14317562 original size:41 final size:41
Alignment explanation
Indices: 14317485--14317562 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
14317475 TTTGTATCTC
* * *
14317485 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
14317526 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
14317563 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:14324229 original size:9 final size:9
Alignment explanation
Indices: 14324215--14324254 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
14324205 GTAGTGATTC
14324215 AATTCGGTT
1 AATTCGGTT
*
14324224 AATTCGGGT
1 AATTCGGTT
14324233 AATTCGGTT
1 AATTCGGTT
14324242 AATTCGGTT
1 AATTCGGTT
14324251 AATT
1 AATT
14324255 TTTAACCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (9 bp):
AATTCGGTT
Found at i:14327096 original size:30 final size:32
Alignment explanation
Indices: 14327049--14327109 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
14327039 AACCTCCTTA
14327049 CTTTCCCCTAAAAACTTTTACT-CCCTCCCAC
1 CTTTCCCCTAAAAACTTTTACTCCCCTCCCAC
*
14327080 CTTTCCCC-AGAAACTTTTACTCCCCTCCCA
1 CTTTCCCCTAAAAACTTTTACTCCCCTCCCA
14327110 TCCCACCCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 12 0.43
31 16 0.57
ACGTcount: A:0.21, C:0.46, G:0.02, T:0.31
Consensus pattern (32 bp):
CTTTCCCCTAAAAACTTTTACTCCCCTCCCAC
Found at i:14327675 original size:19 final size:19
Alignment explanation
Indices: 14327651--14327687 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
14327641 AGCTAATAAT
14327651 AAATTTGATTACGGTGGGA
1 AAATTTGATTACGGTGGGA
14327670 AAATTTGATTACGGTGGG
1 AAATTTGATTACGGTGGG
14327688 TGACAGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.32
Consensus pattern (19 bp):
AAATTTGATTACGGTGGGA
Found at i:14329573 original size:19 final size:19
Alignment explanation
Indices: 14329549--14329587 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
14329539 GAGAGGTCCC
*
14329549 ATGTAAGACCATGTTTGGG
1 ATGTAAGACCATGTCTGGG
14329568 ATGTAAGACCATGTCTGGG
1 ATGTAAGACCATGTCTGGG
14329587 A
1 A
14329588 CATGGCATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (19 bp):
ATGTAAGACCATGTCTGGG
Found at i:14329610 original size:69 final size:69
Alignment explanation
Indices: 14329499--14329706 Score: 380
Period size: 69 Copynumber: 3.0 Consensus size: 69
14329489 AAGAGGTCCC
14329499 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTT
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTT
14329564 TGGG
66 TGGG
14329568 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTT
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTT
14329633 TGGG
66 TGGG
* * * *
14329637 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTATAAGACTATGTC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTT
14329702 TGGG
66 TGGG
14329706 A
1 A
14329707 CATGGCATGG
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 135 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (69 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTT
TGGG
Found at i:14329642 original size:19 final size:19
Alignment explanation
Indices: 14329618--14329656 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
14329608 GAGAGGTCCC
*
14329618 ATGTAAGACCATGTTTGGG
1 ATGTAAGACCATGTCTGGG
14329637 ATGTAAGACCATGTCTGGG
1 ATGTAAGACCATGTCTGGG
14329656 A
1 A
14329657 CATGGCATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (19 bp):
ATGTAAGACCATGTCTGGG
Found at i:14329720 original size:50 final size:50
Alignment explanation
Indices: 14329640--14329769 Score: 179
Period size: 50 Copynumber: 2.6 Consensus size: 50
14329630 GTTTGGGATG
* ** *
14329640 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCTA
1 TAAGACTATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCATA
* * *
14329690 TAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATG
1 TAAGACTATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCATA
* *
14329740 TAAGACTATATCTGGGATATGGCATTGGCA
1 TAAGACTATGTCTGGGACATGGCATTGGCA
14329770 GTACAAAAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TAAGACTATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCATA
Found at i:14330478 original size:28 final size:28
Alignment explanation
Indices: 14330447--14330501 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
14330437 CATGAAAAAG
14330447 TAAAAATTGGTAGTGAATCAGTTTTGAT
1 TAAAAATTGGTAGTGAATCAGTTTTGAT
14330475 TAAAAATTGGTAGTGAATCAGTTTTGA
1 TAAAAATTGGTAGTGAATCAGTTTTGA
14330502 GACAGCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (28 bp):
TAAAAATTGGTAGTGAATCAGTTTTGAT
Found at i:14336820 original size:12 final size:12
Alignment explanation
Indices: 14336803--14336827 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14336793 ATGTACCCAC
14336803 TCGTTGACAGAT
1 TCGTTGACAGAT
14336815 TCGTTGACAGAT
1 TCGTTGACAGAT
14336827 T
1 T
14336828 GATTCGTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (12 bp):
TCGTTGACAGAT
Found at i:14337111 original size:18 final size:19
Alignment explanation
Indices: 14337071--14337121 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
14337061 TTCTTTCTCG
14337071 TTTATTTTTATTTATGAAA
1 TTTATTTTTATTTATGAAA
*
14337090 -TTATTTTTATTT-TTAAA
1 TTTATTTTTATTTATGAAA
14337107 TTTATTGTTT-TTTAT
1 TTTATT-TTTATTTAT
14337122 TATCTCGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 4 0.14
18 20 0.71
19 4 0.14
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (19 bp):
TTTATTTTTATTTATGAAA
Found at i:14342932 original size:25 final size:25
Alignment explanation
Indices: 14342903--14342959 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
14342893 AGAAGAATGA
*
14342903 AAAATAATAATCAGATATAAAACAT
1 AAAATAATAATCAGATAGAAAACAT
14342928 AAAATAATAATCAGATAGAAAACAT
1 AAAATAATAATCAGATAGAAAACAT
*
14342953 TAAATAA
1 AAAATAA
14342960 AAGAAACTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (25 bp):
AAAATAATAATCAGATAGAAAACAT
Found at i:14344053 original size:8 final size:8
Alignment explanation
Indices: 14344042--14344072 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
14344032 GTAAGAAAAT
14344042 ACAATTTG
1 ACAATTTG
14344050 ACAATTTG
1 ACAATTTG
14344058 ACAATTTG
1 ACAATTTG
14344066 ACAATTT
1 ACAATTT
14344073 TTAAAGCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (8 bp):
ACAATTTG
Found at i:14349486 original size:20 final size:20
Alignment explanation
Indices: 14349424--14349489 Score: 107
Period size: 20 Copynumber: 3.3 Consensus size: 20
14349414 TCTTTCAACA
*
14349424 AAAAAATTCAAAATAAATTT
1 AAAAAATTCAAAATAATTTT
14349444 AAAAAATTCAAAATAATTTT
1 AAAAAATTCAAAATAATTTT
14349464 AAAAAATTCAAAAT-ATTTAT
1 AAAAAATTCAAAATAATTT-T
14349484 AAAAAA
1 AAAAAA
14349490 ATTATAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 4 0.09
20 40 0.91
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAAATTCAAAATAATTTT
Found at i:14350406 original size:73 final size:73
Alignment explanation
Indices: 14350287--14350509 Score: 277
Period size: 73 Copynumber: 3.1 Consensus size: 73
14350277 TAAAAATTGA
* * * * *
14350287 GCATTAGCGGCAATTCTGTAGAAACGCAGCAAACAAATAATCCAAACGCATCGTTTTGATTTGAA
1 GCATTAGCGGCGATTCCGTAAAAACGCAGCAAAAAAATAATCCAAACGCATCGTTTTGATTTGAG
14350352 ATGTAGTG
66 ATGTAGTG
* * * * *
14350360 GCATTAGCGGTGATTCCGTAAAAATGCTGCAAAAAAATAACCCAAACGCTTCGTTTTGATTTGAG
1 GCATTAGCGGCGATTCCGTAAAAACGCAGCAAAAAAATAATCCAAACGCATCGTTTTGATTTGAG
*
14350425 ATGTTGTG
66 ATGTAGTG
* * * * * *
14350433 GCACTAGCGGCGCTTCCATAAAAGCGCAGC-AAAAAATAATCAAAACACATCGTTTTGATTTGAG
1 GCATTAGCGGCGATTCCGTAAAAACGCAGCAAAAAAATAATCCAAACGCATCGTTTTGATTTGAG
*
14350497 ATGCAGTG
66 ATGTAGTG
14350505 GCATT
1 GCATT
14350510 GCCGCAAAAA
Statistics
Matches: 125, Mismatches: 25, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
72 40 0.32
73 85 0.68
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (73 bp):
GCATTAGCGGCGATTCCGTAAAAACGCAGCAAAAAAATAATCCAAACGCATCGTTTTGATTTGAG
ATGTAGTG
Found at i:14350538 original size:51 final size:52
Alignment explanation
Indices: 14350461--14350560 Score: 175
Period size: 51 Copynumber: 1.9 Consensus size: 52
14350451 TAAAAGCGCA
*
14350461 GCAAAAAATAATCAAAACACATCGTTTTGATTTGAGATGCAGTGGCATTGCC
1 GCAAAAAATAATCAAAAAACATCGTTTTGATTTGAGATGCAGTGGCATTGCC
*
14350513 GCAAAAAA-AATCAAAAAACATCGTTTTGATTTGAGATGTAGTGGCATT
1 GCAAAAAATAATCAAAAAACATCGTTTTGATTTGAGATGCAGTGGCATT
14350561 AGCGGCGCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 38 0.83
52 8 0.17
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (52 bp):
GCAAAAAATAATCAAAAAACATCGTTTTGATTTGAGATGCAGTGGCATTGCC
Found at i:14350770 original size:73 final size:71
Alignment explanation
Indices: 14350514--14350779 Score: 442
Period size: 71 Copynumber: 3.7 Consensus size: 71
14350504 GGCATTGCCG
* ** *
14350514 CAAAAAAAATCAAAAAACATCGTTTTGATTTGAGATGTAGTGGCATTAGCGGCGCTTCTATAAAA
1 CAAAAAAAACCAAAACGCATCGTTTTGATTTGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAA
14350579 GCGCCA
66 GCGCCA
* *
14350585 CAAAAAAAACCAAAACGCATCATTTTGATTTGAGATGTAGTGGCGTTAGCGGCGCTTCTGTAAAA
1 CAAAAAAAACCAAAACGCATCGTTTTGATTTGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAA
14350650 GCGCCA
66 GCGCCA
*
14350656 CAAAAAAAACCAAAACACATCGTTTTGATTTGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAA
1 CAAAAAAAACCAAAACGCATCGTTTTGATTTGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAA
14350721 GCGCCA
66 GCGCCA
*
14350727 CAAAAAAAAAACCAAAACGCATCCTTTTGATTTGAGATGTAGTGGCATTAGCG
1 C--AAAAAAAACCAAAACGCATCGTTTTGATTTGAGATGTAGTGGCATTAGCG
14350780 CCGTAGTGGC
Statistics
Matches: 182, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
71 134 0.74
73 48 0.26
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (71 bp):
CAAAAAAAACCAAAACGCATCGTTTTGATTTGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAA
GCGCCA
Found at i:14350845 original size:90 final size:90
Alignment explanation
Indices: 14350692--14350869 Score: 338
Period size: 90 Copynumber: 2.0 Consensus size: 90
14350682 GATTTGAGAT
*
14350692 GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAAAACCAAAACGCATCCTTTTGA
1 GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAAAACCAAAACGCATCATTTTGA
14350757 TTTGAGATGTAGTGGCATTAGCGCC
66 TTTGAGATGTAGTGGCATTAGCGCC
*
14350782 GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAGAAAAAAACCAAAACGCATCATTTTGA
1 GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAAAACCAAAACGCATCATTTTGA
14350847 TTTGAGATGTAGTGGCATTAGCG
66 TTTGAGATGTAGTGGCATTAGCG
14350870 GCGCTTCTGT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (90 bp):
GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAAAACCAAAACGCATCATTTTGA
TTTGAGATGTAGTGGCATTAGCGCC
Found at i:14350918 original size:161 final size:160
Alignment explanation
Indices: 14350621--14350940 Score: 509
Period size: 161 Copynumber: 2.0 Consensus size: 160
14350611 GATTTGAGAT
* *
14350621 GTAGTGGCGTTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAACCAAAACACATCGTTTTGATT
1 GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAACCAAAACACATCATTTTGATT
14350686 TGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAAAACCAAAACGCATCC
66 TGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCAC-AAAAAAAAACCAAAACGCATCC
*
14350751 TTTTGATTTGAGATGTAGTGGCATTAGCGCC
130 TTTTGATTTGAGATGCAGTGGCATTAGCGCC
*
14350782 GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAGAAAAAAACCAAAACGCATCATTTTGA
1 GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCAC-A-AAAAAAACCAAAACACATCATTTTGA
* * *
14350847 TTTGAGATGTAGTGGCATTAGCGGCGCTTCTGTGAAAA-CGCCAC-AAAAATAATCAAAATGCAT
64 TTTGAGATGTAGTGGCATTAGCGGCGCTTCTGT-AAAAGCGCCACAAAAAAAAACCAAAACGCAT
* *
14350910 CGTTTTGATTTGAGATGCAGTGGTATTAGCG
128 CCTTTTGATTTGAGATGCAGTGGCATTAGCG
14350941 GCGCTTTTCC
Statistics
Matches: 147, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
161 79 0.54
162 1 0.01
163 63 0.43
164 4 0.03
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (160 bp):
GTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAACCAAAACACATCATTTTGATT
TGAGATGTAGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAAAAAAAACCAAAACGCATCCT
TTTGATTTGAGATGCAGTGGCATTAGCGCC
Found at i:14350938 original size:71 final size:73
Alignment explanation
Indices: 14350784--14350946 Score: 242
Period size: 71 Copynumber: 2.3 Consensus size: 73
14350774 TTAGCGCCGT
14350784 AGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAGAAAAAAACCAAAACGCATCATTTTGATT
1 AGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAGAAAAAAACCAAAACGCATCATTTTGATT
*
14350849 TGAGATGT
66 TGAGATGC
* * * *
14350857 AGTGGCATTAGCGGCGCTTCTGTGAAAA-CGCCAC-A-AAAATAATCAAAATGCATCGTTTTGAT
1 AGTGGCATTAGCGGCGCTTCTGT-AAAAGCGCCACAAGAAAAAAACCAAAACGCATCATTTTGAT
14350919 TTGAGATGC
65 TTGAGATGC
*
14350928 AGTGGTATTAGCGGCGCTT
1 AGTGGCATTAGCGGCGCTT
14350947 TTCCGAAAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
71 49 0.59
72 1 0.01
73 29 0.35
74 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (73 bp):
AGTGGCATTAGCGGCGCTTCTGTAAAAGCGCCACAAGAAAAAAACCAAAACGCATCATTTTGATT
TGAGATGC
Found at i:14352310 original size:147 final size:147
Alignment explanation
Indices: 14352117--14352586 Score: 396
Period size: 147 Copynumber: 3.2 Consensus size: 147
14352107 TACATTGCTA
* * * * * ** * * *
14352117 TTAGTGGCGCTTTCCATGAAACGCCGCAAAATTGTAATTATGTTTATTGATATGTTGTCGTTTTG
1 TTAGTGGCGCTTTACTTAAAACGCCGCAAAATTGTTATAACATTTATTGATACGCTGCCGTTTTG
** * * * *
14352182 TCTATGGTATTAGTGGCG-TTTTTCTGGAATCGCCACAAGCTTGAGTTAACTGTTGGGGAAACGA
66 TAAATGGTATTAGTGGCGTTTTTTC-GAAAACGCCACAAGCTTGAGGTAACTGTTGAGGAAACGA
14352246 CCT-CG-TTTGAACTTATAG
130 -CTGCGTTTTG-ACTTATAG
* * * * *
14352264 TTAGTGGCGCTTTACTTAAAACGCTGCAAAATTGTTCTAACATTTATAGAAACGCTGCCGTTTTT
1 TTAGTGGCGCTTTACTTAAAACGCCGCAAAATTGTTATAACATTTATTGATACGCTGCCGTTTTG
* * ** * * * *
14352329 TAAATGTTATTAGTGGCGTTTTTTCGAAAACGTCACGGGTTTGAGGTAAGTGTTGATGAAGCGAC
66 TAAATGGTATTAGTGGCGTTTTTTCGAAAACGCCACAAGCTTGAGGTAACTGTTGAGGAAACGAC
14352394 TGCGTTTTGACTTATAG
131 TGCGTTTTGACTTATAG
* * * * * * * *
14352411 TTAGTGGTGCTTTGCTTAAAATGCCGCAAAAATATTTTAACATTTATTGATACGATGCTGTTTTG
1 TTAGTGGCGCTTTACTTAAAACGCCGCAAAATTGTTATAACATTTATTGATACGCTGCCGTTTTG
* * * ** * * * * ** *
14352476 CTATAT--TATTAGTGGCATTTATTAAAAAATGCCACAGGTTTGAGCTATTTGTTGATGAAACGA
66 -TAAATGGTATTAGTGGCGTTTTTTCGAAAACGCCACAAGCTTGAGGTAACTGTTGAGGAAACGA
14352539 CTGCGTTTTGACTTATAG
130 CTGCGTTTTGACTTATAG
14352557 TTAGTGGCGC-TTA-TATATAAACGCCGCAAA
1 TTAGTGGCGCTTTACT-TA-AAACGCCGCAAA
14352587 TGGTTAATTT
Statistics
Matches: 261, Mismatches: 56, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
144 1 0.00
145 4 0.02
146 86 0.33
147 156 0.60
148 14 0.05
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.37
Consensus pattern (147 bp):
TTAGTGGCGCTTTACTTAAAACGCCGCAAAATTGTTATAACATTTATTGATACGCTGCCGTTTTG
TAAATGGTATTAGTGGCGTTTTTTCGAAAACGCCACAAGCTTGAGGTAACTGTTGAGGAAACGAC
TGCGTTTTGACTTATAG
Found at i:14352554 original size:146 final size:146
Alignment explanation
Indices: 14352212--14352586 Score: 391
Period size: 146 Copynumber: 2.6 Consensus size: 146
14352202 TTTCTGGAAT
* * * * **
14352212 CGCCACAAGCTTGAGTTAACTGTTGGGGAAACGACCT-CG-TTTGAACTTATAGTTAGTGGCGCT
1 CGCCACAGGTTTGAGCTAAGTGTTGATGAAACGA-CTGCGTTTTG-ACTTATAGTTAGTGGCGCT
* * * * * *
14352275 TTACTTAAAACGCTGCAAAATTGTTCTAACATTTATAGAAACGCTGCCGTTTTTTAAATGTTATT
64 TTACTTAAAACGCCGCAAAAATATTCTAACATTTATAGAAACGATGCCGTTTTCT-AATATTATT
* * **
14352340 AGTGGCGTTTTTTCGAAAA
128 AGTGGCATTTATTAAAAAA
* * * * *
14352359 CGTCACGGGTTTGAGGTAAGTGTTGATGAAGCGACTGCGTTTTGACTTATAGTTAGTGGTGCTTT
1 CGCCACAGGTTTGAGCTAAGTGTTGATGAAACGACTGCGTTTTGACTTATAGTTAGTGGCGCTTT
* * * * * *
14352424 GCTTAAAATGCCGCAAAAATATTTTAACATTTATTGATACGATGCTGTTTTGCT-ATATTATTAG
66 ACTTAAAACGCCGCAAAAATATTCTAACATTTATAGAAACGATGCCGTTTT-CTAATATTATTAG
14352488 TGGCATTTATTAAAAAA
130 TGGCATTTATTAAAAAA
* **
14352505 TGCCACAGGTTTGAGCTATTTGTTGATGAAACGACTGCGTTTTGACTTATAGTTAGTGGCGC-TT
1 CGCCACAGGTTTGAGCTAAGTGTTGATGAAACGACTGCGTTTTGACTTATAGTTAGTGGCGCTTT
14352569 A-TATATAAACGCCGCAAA
66 ACT-TA-AAACGCCGCAAA
14352587 TGGTTAATTT
Statistics
Matches: 187, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
144 1 0.01
145 4 0.02
146 89 0.48
147 88 0.47
148 5 0.03
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.36
Consensus pattern (146 bp):
CGCCACAGGTTTGAGCTAAGTGTTGATGAAACGACTGCGTTTTGACTTATAGTTAGTGGCGCTTT
ACTTAAAACGCCGCAAAAATATTCTAACATTTATAGAAACGATGCCGTTTTCTAATATTATTAGT
GGCATTTATTAAAAAA
Found at i:14353232 original size:18 final size:17
Alignment explanation
Indices: 14353209--14353249 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
14353199 TTCGACTCAT
*
14353209 TTAAATATGTTACATTAC
1 TTAAATATATTAC-TTAC
14353227 TTAAATATATTACTTAC
1 TTAAATATATTACTTAC
*
14353244 TAAAAT
1 TTAAAT
14353250 TTATAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (17 bp):
TTAAATATATTACTTAC
Found at i:14353249 original size:17 final size:18
Alignment explanation
Indices: 14353211--14353272 Score: 54
Period size: 18 Copynumber: 3.2 Consensus size: 18
14353201 CGACTCATTT
* *
14353211 AAATATGTTACATTACTT
1 AAATATATTACATTACTA
14353229 AAATATATTAC-TTACTA
1 AAATATATTACATTACTA
14353246 AAATTTATAATTTACATTACTTA
1 AAA--TAT-A-TTACATTAC-TA
14353269 AAAT
1 AAAT
14353273 TTATATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 8 0.22
18 10 0.28
19 3 0.08
20 1 0.03
21 5 0.14
22 4 0.11
23 5 0.14
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.44
Consensus pattern (18 bp):
AAATATATTACATTACTA
Found at i:14353274 original size:23 final size:22
Alignment explanation
Indices: 14353218--14353277 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 22
14353208 TTTAAATATG
14353218 TTACATTACTT-AAA--TAT-A
1 TTACATTACTTAAAATTTATAA
14353236 TTAC-TTAC-TAAAATTTATAA
1 TTACATTACTTAAAATTTATAA
14353256 TTTACATTACTTAAAATTTATA
1 -TTACATTACTTAAAATTTATA
14353278 TATATATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.03
17 7 0.20
18 4 0.11
19 3 0.09
20 1 0.03
21 4 0.11
22 4 0.11
23 11 0.31
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
TTACATTACTTAAAATTTATAA
Found at i:14353565 original size:9 final size:9
Alignment explanation
Indices: 14353517--14353690 Score: 51
Period size: 9 Copynumber: 19.1 Consensus size: 9
14353507 AAAGTGATAT
14353517 ACTTACATA
1 ACTTACATA
*
14353526 ACTTATATTTAA
1 ACTTACA--T-A
*
14353538 ACTTATATAA
1 ACTTACAT-A
*
14353548 ACTTGCATA
1 ACTTACATA
14353557 ACTTACATA
1 ACTTACATA
*
14353566 A-TAACATAATA
1 ACTTAC---ATA
*
14353577 ACTTATATA
1 ACTTACATA
*
14353586 A--TACACAA
1 ACTTACA-TA
14353594 ACTTACATA
1 ACTTACATA
*
14353603 ACTTAAATA
1 ACTTACATA
14353612 ACTAATTACAT-
1 AC---TTACATA
*
14353623 A-GTACATA
1 ACTTACATA
**
14353631 ACTTTGATA
1 ACTTACATA
* *
14353640 ACTAACATT
1 ACTTACATA
*
14353649 A--TACACA
1 ACTTACATA
14353656 ACTTACATA
1 ACTTACATA
*
14353665 A--TACATT
1 ACTTACATA
*
14353672 TCTTACATA
1 ACTTACATA
14353681 ACTTACATA
1 ACTTACATA
14353690 A
1 A
14353691 TACACAACTT
Statistics
Matches: 118, Mismatches: 28, Indels: 38
0.64 0.15 0.21
Matches are distributed among these distances:
7 17 0.14
8 6 0.05
9 61 0.52
10 13 0.11
11 6 0.05
12 15 0.13
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (9 bp):
ACTTACATA
Found at i:14353670 original size:41 final size:41
Alignment explanation
Indices: 14353553--14353701 Score: 120
Period size: 41 Copynumber: 3.8 Consensus size: 41
14353543 TATAAACTTG
*
14353553 CATAACTTACATAA-TAACATAAT----AACTTATATAATA
1 CATAACTTACATAACTAACATAATACACAACTTACATAATA
* * *
14353589 CACAAACTTACATAACTTAA-AT-A-AC-TAA-TTACATAGTA
1 CA-TAACTTACATAAC-TAACATAATACACAACTTACATAATA
** *
14353627 CATAACTTTGATAACTAACATTATACACAACTTACATAATA
1 CATAACTTACATAACTAACATAATACACAACTTACATAATA
** *
14353668 CATTTCTTACATAACTTACATAATACACAACTTA
1 CATAACTTACATAACTAACATAATACACAACTTA
14353702 AATACATAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
36 5 0.06
37 24 0.27
38 13 0.15
39 7 0.08
40 2 0.02
41 37 0.42
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.32
Consensus pattern (41 bp):
CATAACTTACATAACTAACATAATACACAACTTACATAATA
Found at i:14354304 original size:44 final size:44
Alignment explanation
Indices: 14353702--14354303 Score: 1055
Period size: 44 Copynumber: 13.7 Consensus size: 44
14353692 ACACAACTTA
14353702 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
*
14353746 AATGCATAATACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
*
14353790 AATACATATTACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
14353834 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
14353878 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
* * * *
14353922 AAAACATATTACACAACCTAATTAATATTATACATAACATACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
14353966 AATACATAATACACAACTTAATTAATATTA-A-ATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
14354008 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
* *
14354052 AATGCATAATACACAACTTAATTAATATTATACATAACATACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
*
14354096 AATACATATTACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
*
14354140 AATGCATAATACACAACTTAATTAATATTATACATAACGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
* * *
14354184 AATACACATTACACAACTTAATTAATATTATACATAACATACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
* *
14354228 AATACATAATACACAACTTAATTAATATTATATATAATGTACAT
1 AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
14354272 AATACATAATACACAACTTAATTAATATTATA
1 AATACATAATACACAACTTAATTAATATTATA
14354304 TGTGCTGTTT
Statistics
Matches: 528, Mismatches: 28, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
42 40 0.08
43 2 0.00
44 486 0.92
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (44 bp):
AATACATAATACACAACTTAATTAATATTATACATAACGTACAT
Found at i:14355977 original size:21 final size:21
Alignment explanation
Indices: 14355951--14356021 Score: 115
Period size: 21 Copynumber: 3.4 Consensus size: 21
14355941 CTACAACTTA
*
14355951 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGTGAGGG
*
14355972 AAGCAGAGGCGGTAGTGAGGG
1 AAGCAGAGGCGGCAGTGAGGG
*
14355993 AAGCAGAGGCGGCAGTAAGGG
1 AAGCAGAGGCGGCAGTGAGGG
14356014 AAGCAGAG
1 AAGCAGAG
14356022 CAGAGCAGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.32, C:0.14, G:0.49, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGTGAGGG
Found at i:14356441 original size:43 final size:43
Alignment explanation
Indices: 14356370--14356596 Score: 222
Period size: 43 Copynumber: 5.2 Consensus size: 43
14356360 ATCAAACAAG
**
14356370 AGCGGCGTTTCTT-AGGGAAGCGCCGCTAAAGAACATGACCTTT
1 AGCGGCGTTT-TTGAGAAAAGCGCCGCTAAAGAACATGACCTTT
* * * * ***
14356413 AGCGGTGTTTTTGAGAAAGGCGTCGCTAAAGAACAAGGGTTTT
1 AGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACATGACCTTT
* *
14356456 AGCGGCGTTTTTGAGAAAAAACCGCCGCTAAAGAACATGACGTTT
1 AGCGGCGTTTTTGAG--AAAAGCGCCGCTAAAGAACATGACCTTT
* * **
14356501 AGTGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACAAGGGCTTT
1 AGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACATGACCTTT
* * * * **
14356544 AGCGGCATTTGTGAGAGAAGTGCCGCTAAAGAACATGTTCTTT
1 AGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACATGACCTTT
*
14356587 AGCGACGTTT
1 AGCGGCGTTT
14356597 ATATTAATAA
Statistics
Matches: 148, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
42 2 0.01
43 111 0.75
45 35 0.24
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (43 bp):
AGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACATGACCTTT
Found at i:14356491 original size:88 final size:86
Alignment explanation
Indices: 14356390--14356596 Score: 270
Period size: 88 Copynumber: 2.4 Consensus size: 86
14356380 CTTAGGGAAG
* * * *
14356390 CGCCGCTAAAGAACATGACCTTTAGCGGTGTTTTTGAGAAAGGCGTCGCTAAAGAACAAGGGTTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACAAGGGCTT
* *
14356455 TAGCGGCGTTTTTGAGAAAAAAC
66 TAGCGGCATTTGTGAG--AAAAC
* *
14356478 CGCCGCTAAAGAACATGACGTTTAGTGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACAAGGGCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACAAGGGCTT
* *
14356543 TAGCGGCATTTGTGAGAGAAG
66 TAGCGGCATTTGTGAGAAAAC
* ** *
14356564 TGCCGCTAAAGAACATGTTCTTTAGCGACGTTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGTTT
14356597 ATATTAATAA
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
86 30 0.29
88 73 0.71
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (86 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGAACAAGGGCTT
TAGCGGCATTTGTGAGAAAAC
Found at i:14357277 original size:20 final size:20
Alignment explanation
Indices: 14357252--14357300 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
14357242 CTGTTGCCTC
*
14357252 TGTCCCTTCCACCATGG-TGT
1 TGTCCCTTCCACCA-GGCTAT
14357272 TGTCCCTTCCACCAGGCTAT
1 TGTCCCTTCCACCAGGCTAT
14357292 TGTCCCTTC
1 TGTCCCTTC
14357301 AATGGGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.10, C:0.39, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTCCCTTCCACCAGGCTAT
Found at i:14357402 original size:8 final size:8
Alignment explanation
Indices: 14357383--14357428 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
14357373 GAAAGAAAAT
14357383 AGAGAA-A
1 AGAGAAGA
14357390 AGAGAAGA
1 AGAGAAGA
14357398 AGAGAAGA
1 AGAGAAGA
14357406 AGAAGAAGGA
1 AG-AGAA-GA
14357416 AGA-AAGA
1 AGAGAAGA
14357423 A-AGAAG
1 AGAGAAG
14357429 GTAATGTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 1 0.03
7 12 0.34
8 13 0.37
9 5 0.14
10 4 0.11
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (8 bp):
AGAGAAGA
Found at i:14357417 original size:21 final size:21
Alignment explanation
Indices: 14357366--14357428 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
14357356 GTATCAATTG
*
14357366 GAAAAGAGAAAGAAA-ATAG-A
1 GAAAAGAG-AAGAAAGAAAGAA
14357386 GAAAAGAGAAG-AAGAGAAGAA
1 GAAAAGAGAAGAAAGA-AAGAA
14357407 GAAGAAG-GAAGAAAGAAAGAA
1 GAA-AAGAGAAGAAAGAAAGAA
14357428 G
1 G
14357429 GTAATGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
18 2 0.05
19 4 0.11
20 10 0.27
21 14 0.38
22 7 0.19
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (21 bp):
GAAAAGAGAAGAAAGAAAGAA
Found at i:14358347 original size:52 final size:54
Alignment explanation
Indices: 14358291--14358422 Score: 198
Period size: 55 Copynumber: 2.5 Consensus size: 54
14358281 GGCAGGCACC
14358291 AATCAATTTTTTATATTAAAAAA-A-CTTTAATCGCGCCTATATGACAAACGCG
1 AATCAATTTTTTATATTAAAAAATATCTTTAATCGCGCCTATATGACAAACGCG
* * **
14358343 AATCAATTTTTTATATTAAAAAATATTTTTTAATCGCGCCTATTTGACAGGCGCG
1 AATCAATTTTTTATATTAAAAAATA-TCTTTAATCGCGCCTATATGACAAACGCG
14358398 AATCAA-TTTTTATATTAAAAAATAT
1 AATCAATTTTTTATATTAAAAAATAT
14358423 TTTTTGTTTA
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
52 23 0.32
53 2 0.03
54 18 0.25
55 30 0.41
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (54 bp):
AATCAATTTTTTATATTAAAAAATATCTTTAATCGCGCCTATATGACAAACGCG
Found at i:14358398 original size:55 final size:55
Alignment explanation
Indices: 14358260--14358427 Score: 218
Period size: 52 Copynumber: 3.1 Consensus size: 55
14358250 AATGGTATGT
* * * * *
14358260 TTTTTGTAATCGTGCCTATCTGGCAGGCACCAATCAATTTTTTATATTAAAAAA-A
1 TTTTT-TAATCGCGCCTATATGACAGGCGCGAATCAATTTTTTATATTAAAAAATA
* **
14358315 --CTTTAATCGCGCCTATATGACAAACGCGAATCAATTTTTTATATTAAAAAATA
1 TTTTTTAATCGCGCCTATATGACAGGCGCGAATCAATTTTTTATATTAAAAAATA
*
14358368 TTTTTTAATCGCGCCTATTTGACAGGCGCGAATCAA-TTTTTATATTAAAAAATA
1 TTTTTTAATCGCGCCTATATGACAGGCGCGAATCAATTTTTTATATTAAAAAATA
14358422 TTTTTT
1 TTTTTT
14358428 GTTTAAATAA
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
52 41 0.42
53 3 0.03
54 24 0.24
55 30 0.31
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.39
Consensus pattern (55 bp):
TTTTTTAATCGCGCCTATATGACAGGCGCGAATCAATTTTTTATATTAAAAAATA
Found at i:14358717 original size:16 final size:16
Alignment explanation
Indices: 14358682--14358720 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14358672 TTAACTCATT
**
14358682 TAATTTTTATATAATG
1 TAATTTTTATATAACA
14358698 TAATTTTTATATAACA
1 TAATTTTTATATAACA
14358714 TAATTTT
1 TAATTTT
14358721 CTTTATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (16 bp):
TAATTTTTATATAACA
Found at i:14371022 original size:144 final size:143
Alignment explanation
Indices: 14370840--14371126 Score: 368
Period size: 143 Copynumber: 2.0 Consensus size: 143
14370830 AAAAGATTAA
* * * *
14370840 ATTTTTAAAATTCAAAAAGAAAAAAGAGACTAGGAAAGAGATTTAACC-AA-GT-ACTGAGAGCT
1 ATTTTTAAAATTCAAAAAGAAAAAAGAGACTAGAAAAGAAATCTAACCTAATATAACTGAGAGCT
* *
14370902 GTGGATCTAGATCTAGAGGGATAAAATTCTTGAAATTAAAAGTAAAAGGACCAAATTTCAGAAAT
66 GTGG-----GATCTAGAGAGATAAAATTCTTGAAATTAAAAATAAAAGGACCAAATTTCAGAAAT
*
14370967 CCCAAAAAGCCAGGGACT
126 CCCAAAAAGACAGGGACT
*
14370985 ATTTTCTAAAATTC-AAAA-AATAAAGAGACTAGAAAAGAAATCTAACCTAATTATAACTGAGAG
1 ATTTT-TAAAATTCAAAAAGAAAAAAGAGACTAGAAAAGAAATCTAACCTAA-TATAACTGAGAG
* * *
14371048 CTGTGGGATGTAGAGAGATGAAATTCTTGAAATTAAAAATAAAAGGACTAAATTTCAGAAATCCC
64 CTGTGGGATCTAGAGAGATAAAATTCTTGAAATTAAAAATAAAAGGACCAAATTTCAGAAATCCC
*
14371113 AAAAATACAGGGAC
129 AAAAAGACAGGGAC
14371127 AAAGGAGAAT
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
143 66 0.53
144 25 0.20
145 11 0.09
146 8 0.06
147 1 0.01
148 14 0.11
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.23
Consensus pattern (143 bp):
ATTTTTAAAATTCAAAAAGAAAAAAGAGACTAGAAAAGAAATCTAACCTAATATAACTGAGAGCT
GTGGGATCTAGAGAGATAAAATTCTTGAAATTAAAAATAAAAGGACCAAATTTCAGAAATCCCAA
AAAGACAGGGACT
Found at i:14402200 original size:50 final size:50
Alignment explanation
Indices: 14402074--14402257 Score: 203
Period size: 50 Copynumber: 3.7 Consensus size: 50
14402064 TAATAACATA
* *
14402074 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCTTATAC--TG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTG
* *
14402123 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTG
* * ** ** * *
14402173 CCCATGCCATGTCTCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTG
* *
14402223 CCAACGCCATGTCCCAAACATGGTCTTACATGGGA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA
14402258 ACTCATTCCC
Statistics
Matches: 112, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
48 4 0.04
49 37 0.33
50 71 0.63
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTG
Found at i:14406292 original size:40 final size:40
Alignment explanation
Indices: 14406262--14406471 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
14406252 GGACTAAGAT
* * * *
14406262 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
14406302 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
14406342 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
14406382 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
14406422 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
14406461 CCGAAGGCATT
1 CCGAAGGCATT
14406472 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 125 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:14406346 original size:80 final size:80
Alignment explanation
Indices: 14406209--14406471 Score: 316
Period size: 80 Copynumber: 3.3 Consensus size: 80
14406199 TTGAATGCTG
* * * * * **
14406209 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
14406272 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
14406289 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
14406354 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
14406369 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
14406433 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
14406448 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14406472 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:14406423 original size:120 final size:120
Alignment explanation
Indices: 14406209--14406471 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
14406199 TTGAATGCTG
* * *
14406209 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
14406273 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
14406329 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
14406392 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
14406448 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14406472 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:14406491 original size:79 final size:80
Alignment explanation
Indices: 14406262--14406506 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
14406252 GGACTAAGAT
* * * * * ** * *
14406262 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
14406326 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
14406342 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
14406407 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
14406422 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
14406486 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
14406500 CCGAAGG
1 CCGAAGG
14406507 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:14414242 original size:40 final size:40
Alignment explanation
Indices: 14414212--14414421 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
14414202 GGACTAAGAT
* * * **
14414212 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
14414252 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
14414292 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
*
14414332 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
14414372 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
14414411 CCGAAGGCATT
1 CCGAAGGCATT
14414422 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 125 0.79
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:14423731 original size:13 final size:13
Alignment explanation
Indices: 14423713--14423778 Score: 81
Period size: 13 Copynumber: 5.5 Consensus size: 13
14423703 AATTTTGTAT
14423713 TATTTAGTGATAA
1 TATTTAGTGATAA
*
14423726 TATTTA--GA-AT
1 TATTTAGTGATAA
14423736 TATTTAGTGATAA
1 TATTTAGTGATAA
14423749 TATTTAG-GAT--
1 TATTTAGTGATAA
14423759 TATTTAGTGATAA
1 TATTTAGTGATAA
14423772 TATTTAG
1 TATTTAG
14423779 GAAAAATCTA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
10 14 0.31
11 5 0.11
12 5 0.11
13 21 0.47
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:14423779 original size:23 final size:23
Alignment explanation
Indices: 14423711--14423780 Score: 131
Period size: 23 Copynumber: 3.0 Consensus size: 23
14423701 TAAATTTTGT
*
14423711 ATTATTTAGTGATAATATTTAGA
1 ATTATTTAGTGATAATATTTAGG
14423734 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGATAATATTTAGG
14423757 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGATAATATTTAGG
14423780 A
1 A
14423781 AAAATCTAGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (23 bp):
ATTATTTAGTGATAATATTTAGG
Found at i:14424669 original size:21 final size:20
Alignment explanation
Indices: 14424646--14424683 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14424636 TATTTTATTT
14424646 TTTTTAAATTTATTTTTACA
1 TTTTTAAATTTATTTTTACA
* *
14424666 TTTTTGAATTTGTTTTTA
1 TTTTTAAATTTATTTTTA
14424684 TTTTATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTAAATTTATTTTTACA
Found at i:14429166 original size:23 final size:23
Alignment explanation
Indices: 14429140--14429191 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
14429130 TTATTTTTAA
*
14429140 ATTTTGAATTATTTAGTGATAAC
1 ATTTAGAATTATTTAGTGATAAC
* *
14429163 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAC
14429186 ATTTAG
1 ATTTAG
14429192 GAAAAATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAC
Found at i:14429168 original size:13 final size:13
Alignment explanation
Indices: 14429149--14429191 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
14429139 AATTTTGAAT
14429149 TATTTAGTGATAA
1 TATTTAGTGATAA
*
14429162 CATTTAG-GAT--
1 TATTTAGTGATAA
14429172 TATTTAGTGATAA
1 TATTTAGTGATAA
14429185 TATTTAG
1 TATTTAG
14429192 GAAAAATGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:14429192 original size:23 final size:23
Alignment explanation
Indices: 14429147--14429193 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
14429137 TAAATTTTGA
14429147 ATTATTTAGTGATAACATTTAGG
1 ATTATTTAGTGATAACATTTAGG
*
14429170 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGATAACATTTAGG
14429193 A
1 A
14429194 AAAATGTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (23 bp):
ATTATTTAGTGATAACATTTAGG
Found at i:14430713 original size:20 final size:20
Alignment explanation
Indices: 14430688--14430741 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
14430678 TGAACCCTTC
*
14430688 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCAGTG
*
14430708 CATTTACTTACTTTTCAGTG
1 CATTTACTTACTTTCCAGTG
14430728 CATTTACTTACTTT
1 CATTTACTTACTTT
14430742 AGCTTAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.20, C:0.22, G:0.06, T:0.52
Consensus pattern (20 bp):
CATTTACTTACTTTCCAGTG
Found at i:14431696 original size:45 final size:45
Alignment explanation
Indices: 14431613--14431903 Score: 187
Period size: 45 Copynumber: 6.5 Consensus size: 45
14431603 TGTGCCATGG
* ** *** * *
14431613 TGTCTTTCAACCATGGTCTTATTTATTCTCATCTTGATGCCATAG
1 TGTCTTTCAACCATGGTCTTACTCGTTAGAATCGTGATGCCATAA
* * * *
14431658 TGTCTTTCAACCATGGTCTTATTCGTTTGATTCGTGATGTCAT-A
1 TGTCTTTCAACCATGGTCTTACTCGTTAGAATCGTGATGCCATAA
* * * * *
14431702 TCATCTTTTAGCTATGGTCTTACT-ATATAGAATCGTGATGCCATAA
1 T-GTCTTTCAACCATGGTCTTACTCGT-TAGAATCGTGATGCCATAA
* * *** * *
14431748 CGTTTTTCTGTCATGGTCTTACTCGATAGAGTCGTGATGCCATAA
1 TGTCTTTCAACCATGGTCTTACTCGTTAGAATCGTGATGCCATAA
* * * * *
14431793 CGTCTTTCAATCATGGTCTTACTCGATAGAATCATGATGTCATAA
1 TGTCTTTCAACCATGGTCTTACTCGTTAGAATCGTGATGCCATAA
* ** * *
14431838 TGTCTTTTAGTCATGGTCTTACTCATTTATGATAT-G-G-TGCCATAG
1 TGTCTTTCAACCATGGTCTTACTC-GTTA-GA-ATCGTGATGCCATAA
*
14431883 TGTCTTTCAACTATGGTCTTA
1 TGTCTTTCAACCATGGTCTTA
14431904 ATTTTTAGAA
Statistics
Matches: 193, Mismatches: 46, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
44 2 0.01
45 183 0.95
46 4 0.02
47 2 0.01
48 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (45 bp):
TGTCTTTCAACCATGGTCTTACTCGTTAGAATCGTGATGCCATAA
Found at i:14431768 original size:90 final size:90
Alignment explanation
Indices: 14431669--14431861 Score: 219
Period size: 90 Copynumber: 2.1 Consensus size: 90
14431659 GTCTTTCAAC
* * * * * * * * *
14431669 CATGGTCTTATTCGTTTGATTCGTGATGTCATATCATCTTT-TAGCTATGGTCTTACTATATAGA
1 CATGGTCTTACTCGATAGAGTCGTGATGCCATAACATCTTTCAATC-ATGGTCTTACTAGATAGA
* *
14431733 ATCGTGATGCCATAACGT-TTTTCTGT
65 ATCATGATGCCATAACGTCTTTT-AGT
* *
14431759 CATGGTCTTACTCGATAGAGTCGTGATGCCATAACGTCTTTCAATCATGGTCTTACTCGATAGAA
1 CATGGTCTTACTCGATAGAGTCGTGATGCCATAACATCTTTCAATCATGGTCTTACTAGATAGAA
* *
14431824 TCATGATGTCATAATGTCTTTTAGT
66 TCATGATGCCATAACGTCTTTTAGT
14431849 CATGGTCTTACTC
1 CATGGTCTTACTC
14431862 ATTTATGATA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
90 80 0.93
91 6 0.07
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (90 bp):
CATGGTCTTACTCGATAGAGTCGTGATGCCATAACATCTTTCAATCATGGTCTTACTAGATAGAA
TCATGATGCCATAACGTCTTTTAGT
Found at i:14431879 original size:90 final size:90
Alignment explanation
Indices: 14431713--14431903 Score: 212
Period size: 90 Copynumber: 2.1 Consensus size: 90
14431703 CATCTTTTAG
* * *
14431713 CTATGGTCTTACTATATAGAATCGTGATGCCATAACGTTTTTCTGTCATGGTCTTACTCGATAGA
1 CTATGGTCTTACTAGATAGAATCATGATGCCATAACGTTTTTCAGTCATGGTCTTACTCGATAGA
*
14431778 GTCGTGATGCCATAACGTCTTTCAA
66 GTCATGATGCCATAACGTCTTTCAA
* * *
14431803 -TCATGGTCTTACTCGATAGAATCATGATGTCATAATGTCTTTT-AGTCATGGTCTTACTC-ATT
1 CT-ATGGTCTTACTAGATAGAATCATGATGCCATAACGT-TTTTCAGTCATGGTCTTACTCGA--
* **
14431865 TATGA-T-ATGGTGCCATAGTGTCTTTCAA
62 TA-GAGTCATGATGCCATAACGTCTTTCAA
14431893 CTATGGTCTTA
1 CTATGGTCTTA
14431904 ATTTTTAGAA
Statistics
Matches: 85, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
89 2 0.02
90 73 0.86
91 8 0.09
92 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (90 bp):
CTATGGTCTTACTAGATAGAATCATGATGCCATAACGTTTTTCAGTCATGGTCTTACTCGATAGA
GTCATGATGCCATAACGTCTTTCAA
Found at i:14452454 original size:33 final size:33
Alignment explanation
Indices: 14452401--14452511 Score: 123
Period size: 33 Copynumber: 3.4 Consensus size: 33
14452391 TGTCTCAATG
* * *
14452401 GACTATCTTTATTCTATGTTTACTATCCCAGTA
1 GACTATCTCTATTCTGTGTTTACTATCCCAGCA
* * * *
14452434 GACTATCTCTATTTTGTGTTTATTGTCCCAGCG
1 GACTATCTCTATTCTGTGTTTACTATCCCAGCA
* * *
14452467 GACTATCTCTATTCTGTGTTTACTGTCTCAGCG
1 GACTATCTCTATTCTGTGTTTACTATCCCAGCA
*
14452500 GACTACCTCTAT
1 GACTATCTCTAT
14452512 GGATGCCATG
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.43
Consensus pattern (33 bp):
GACTATCTCTATTCTGTGTTTACTATCCCAGCA
Found at i:14452504 original size:66 final size:66
Alignment explanation
Indices: 14452375--14452511 Score: 166
Period size: 66 Copynumber: 2.1 Consensus size: 66
14452365 TAATGGACTA
* * * * *
14452375 TCTATTTTATATTTATTGTCTCAATGGACTATCTTTATTCTATGTTTACTATCCCAGTAGACTAT
1 TCTATTTTATATTTATTGTCCCAACGGACTATCTCTATTCTATGTTTACTATCCCAGCAGACTAC
14452440 C
66 C
* * * * * * *
14452441 TCTATTTTGTGTTTATTGTCCCAGCGGACTATCTCTATTCTGTGTTTACTGTCTCAGCGGACTAC
1 TCTATTTTATATTTATTGTCCCAACGGACTATCTCTATTCTATGTTTACTATCCCAGCAGACTAC
14452506 C
66 C
14452507 TCTAT
1 TCTAT
14452512 GGATGCCATG
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (66 bp):
TCTATTTTATATTTATTGTCCCAACGGACTATCTCTATTCTATGTTTACTATCCCAGCAGACTAC
C
Found at i:14454986 original size:27 final size:28
Alignment explanation
Indices: 14454940--14455030 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 28
14454930 GACTTATACC
* *
14454940 GGCAAA-CCCTAGTTCGCCAAACCAACT
1 GGCAAACCCCTAGCTCACCAAACCAACT
14454967 GGCAAACCCCTA-CTCACCAAACCAACT
1 GGCAAACCCCTAGCTCACCAAACCAACT
* * **
14454994 AGCAAA-CCTTAGCTTGCCAAACCAACT
1 GGCAAACCCCTAGCTCACCAAACCAACT
*
14455021 GGCGAACCCC
1 GGCAAACCCC
14455031 ACCTCGCGAA
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
26 4 0.08
27 41 0.79
28 7 0.13
ACGTcount: A:0.34, C:0.40, G:0.13, T:0.13
Consensus pattern (28 bp):
GGCAAACCCCTAGCTCACCAAACCAACT
Found at i:14455042 original size:27 final size:26
Alignment explanation
Indices: 14454953--14455042 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
14454943 AAACCCTAGT
14454953 TCGCCAAACCAACTGGCAAACCCCTAC
1 TCGCCAAACCAACTGGCAAACCCC-AC
* * **
14454980 TCACCAAACCAACTAGCAAACCTTAGC
1 TCGCCAAACCAACTGGCAAACCCCA-C
* *
14455007 TTGCCAAACCAACTGGCGAACCCCACC
1 TCGCCAAACCAACTGGCAAACCCCA-C
*
14455034 TCGCGAAAC
1 TCGCCAAAC
14455043 AATTGGAAAA
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
26 1 0.02
27 48 0.98
ACGTcount: A:0.34, C:0.41, G:0.12, T:0.12
Consensus pattern (26 bp):
TCGCCAAACCAACTGGCAAACCCCAC
Found at i:14456236 original size:17 final size:17
Alignment explanation
Indices: 14456216--14456257 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
14456206 TTAATTGTTT
14456216 AAATAATTTAGAC-ATCCA
1 AAATAATTT-GACAAT-CA
*
14456234 AATTAATTTGACAATCA
1 AAATAATTTGACAATCA
14456251 AAATAAT
1 AAATAAT
14456258 AGCAATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (17 bp):
AAATAATTTGACAATCA
Found at i:14456420 original size:31 final size:32
Alignment explanation
Indices: 14456373--14456445 Score: 121
Period size: 31 Copynumber: 2.3 Consensus size: 32
14456363 TGATTTAAAA
*
14456373 TTTATTTTTAAATATTATATATTCTAATTA-TT
1 TTTA-TTTGAAATATTATATATTCTAATTACTT
14456405 TTTATTTGAAATATTATATATTCTAATTACTT
1 TTTATTTGAAATATTATATATTCTAATTACTT
14456437 TTTATTTGA
1 TTTATTTGA
14456446 GTTAGTATCT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
31 24 0.62
32 15 0.38
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (32 bp):
TTTATTTGAAATATTATATATTCTAATTACTT
Found at i:14456442 original size:16 final size:15
Alignment explanation
Indices: 14456392--14456442 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
14456382 AAATATTATA
14456392 TATTCTAATTATTTT
1 TATTCTAATTATTTT
* *
14456407 TATT-TGAAATATTATA
1 TATTCT-AATTATT-TT
14456423 TATTCTAATTACTTTT
1 TATTCTAATTA-TTTT
14456439 TATT
1 TATT
14456443 TGAGTTAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
14 1 0.04
15 10 0.36
16 14 0.50
17 3 0.11
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTCTAATTATTTT
Found at i:14460423 original size:23 final size:22
Alignment explanation
Indices: 14460371--14460428 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 22
14460361 TGAATAATAT
14460371 AATTCTTTTCTTTTCTTTTTTC
1 AATTCTTTTCTTTTCTTTTTTC
14460393 AACTTTCTTTT-TTTTCTTTATTTTC
1 AA--TTCTTTTCTTTTC-TT-TTTTC
*
14460418 TATTCTTTTCT
1 AATTCTTTTCT
14460429 GCTTCTCCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
22 2 0.07
23 12 0.40
24 10 0.33
25 6 0.20
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.72
Consensus pattern (22 bp):
AATTCTTTTCTTTTCTTTTTTC
Found at i:14460549 original size:5 final size:6
Alignment explanation
Indices: 14460537--14460570 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
14460527 AATAATTTAA
14460537 TTATTT TTATTT TTATTT TTATTTCT TTATTT TT
1 TTATTT TTATTT TTATTT TTA-TT-T TTATTT TT
14460571 TAAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 18 0.69
7 4 0.15
8 4 0.15
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:14461123 original size:28 final size:28
Alignment explanation
Indices: 14461092--14461147 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
14461082 GTAAAGGGAT
14461092 TAGTTTTAACAAATGGAAAACATAGAAA
1 TAGTTTTAACAAATGGAAAACATAGAAA
14461120 TAGTTTTAACAAATGGAAAACATAGAAA
1 TAGTTTTAACAAATGGAAAACATAGAAA
14461148 AACTATGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (28 bp):
TAGTTTTAACAAATGGAAAACATAGAAA
Found at i:14461166 original size:30 final size:28
Alignment explanation
Indices: 14461095--14461166 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
14461085 AAGGGATTAG
* *
14461095 TTTTAACAAATGGAAAACATAGAAATAG
1 TTTTAACAAATGGAAAACATAGAAAAAC
14461123 TTTTAACAAATGGAAAACATAGAAAAAC
1 TTTTAACAAATGGAAAACATAGAAAAAC
*
14461151 TATGTTAAGAAATGGA
1 T-T-TTAACAAATGGA
14461167 GAAGGAAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 27 0.69
29 1 0.03
30 11 0.28
ACGTcount: A:0.53, C:0.07, G:0.15, T:0.25
Consensus pattern (28 bp):
TTTTAACAAATGGAAAACATAGAAAAAC
Found at i:14464351 original size:21 final size:20
Alignment explanation
Indices: 14464327--14464366 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14464317 ATATAACTTT
14464327 TAATTCTTTAATAAAATCATA
1 TAATT-TTTAATAAAATCATA
* *
14464348 TAATTTTTCATTAAATCAT
1 TAATTTTTAATAAAATCAT
14464367 TTTGCATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATTTTTAATAAAATCATA
Found at i:14465865 original size:12 final size:12
Alignment explanation
Indices: 14465848--14465875 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14465838 GTTAGAAGTT
14465848 CCACTATTATAA
1 CCACTATTATAA
14465860 CCACTATTATAA
1 CCACTATTATAA
14465872 CCAC
1 CCAC
14465876 CATGATAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (12 bp):
CCACTATTATAA
Found at i:14468252 original size:39 final size:40
Alignment explanation
Indices: 14468175--14468264 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 40
14468165 TCCACGTAAG
* * *
14468175 CGCGATTTGCTTCCACGTCAGTAAATCGCGCTTACGTGGA
1 CGCGATTTGCTTCCACGTAAGTAAATCGAGCTGACGTGGA
14468215 CGCGATTTG-TTGCCACGTAAGT-AATCGAGCTGACGTGGA
1 CGCGATTTGCTT-CCACGTAAGTAAATCGAGCTGACGTGGA
*
14468254 TGCGATTTGCT
1 CGCGATTTGCT
14468265 AACACGTCCC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
39 25 0.57
40 19 0.43
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (40 bp):
CGCGATTTGCTTCCACGTAAGTAAATCGAGCTGACGTGGA
Found at i:14468947 original size:23 final size:24
Alignment explanation
Indices: 14468913--14468972 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
14468903 CGTTTATTTA
14468913 ATGTTCACGAACAT-TAAATGAAC
1 ATGTTCACGAACATATAAATGAAC
* *
14468936 ATGTTCATGAACATATAATTGAAC
1 ATGTTCACGAACATATAAATGAAC
*
14468960 ATATTCACGAACA
1 ATGTTCACGAACA
14468973 ATGTTAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 13 0.41
24 19 0.59
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (24 bp):
ATGTTCACGAACATATAAATGAAC
Found at i:14476353 original size:12 final size:10
Alignment explanation
Indices: 14476317--14476363 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
14476307 GAATCTATCA
*
14476317 AAAATT-ATC
1 AAAATTAATT
*
14476326 AAAATTAATC
1 AAAATTAATT
14476336 AAAATTAACTAT
1 AAAATTAA-T-T
14476348 AAAATTAATT
1 AAAATTAATT
14476358 AAAATT
1 AAAATT
14476364 CTTCATCTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 6 0.18
10 18 0.53
11 2 0.06
12 8 0.24
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATTAATT
Found at i:14478473 original size:62 final size:59
Alignment explanation
Indices: 14478373--14478486 Score: 156
Period size: 62 Copynumber: 1.9 Consensus size: 59
14478363 ATCACTTTAA
* * *
14478373 TATTAAATTAATATAATATTTGTCCAGATAAATATTATATTAAACTTAATATAAAATAT
1 TATTAAATTAATAGAATATTTATCCAGATAAACATTATATTAAACTTAATATAAAATAT
* *
14478432 TATTAAATTAATAGAATGTTTATCTACAAGATAAACATTATATTAAATTTAATAT
1 TATTAAATTAATAGAATATTTATC--C-AGATAAACATTATATTAAACTTAATAT
14478487 TAAGATAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
59 21 0.45
61 1 0.02
62 25 0.53
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.42
Consensus pattern (59 bp):
TATTAAATTAATAGAATATTTATCCAGATAAACATTATATTAAACTTAATATAAAATAT
Found at i:14480244 original size:14 final size:14
Alignment explanation
Indices: 14480225--14480252 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14480215 TTATATTGGG
14480225 TTAAATAATTATGA
1 TTAAATAATTATGA
14480239 TTAAATAATTATGA
1 TTAAATAATTATGA
14480253 CAAGAGGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
TTAAATAATTATGA
Found at i:14482458 original size:4 final size:4
Alignment explanation
Indices: 14482449--14482475 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
14482439 TTTTTTCCTT
14482449 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
14482476 TTTTGATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:14497850 original size:335 final size:335
Alignment explanation
Indices: 14497240--14497913 Score: 1348
Period size: 335 Copynumber: 2.0 Consensus size: 335
14497230 AAGGAATAAT
14497240 AAAAGAAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGTTGATACCCGGAAACCCG
1 AAAAGAAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGTTGATACCCGGAAACCCG
14497305 AAAAAATTGCGCAGTAACTTGACAACTTCGTTCGAGGTGTTTCCGATCTCCAAAAATCATGAAAT
66 AAAAAATTGCGCAGTAACTTGACAACTTCGTTCGAGGTGTTTCCGATCTCCAAAAATCATGAAAT
14497370 TTAAACTAGAATGTCCTTAAATATTTTATATTTGATCTAGAAAGTTTCGGCACTAAACTCAACCC
131 TTAAACTAGAATGTCCTTAAATATTTTATATTTGATCTAGAAAGTTTCGGCACTAAACTCAACCC
14497435 GCTGAATATTTGTTTTAATTTTTACTTGATTTCATCTTTTTCAATTTTTTGACTTTTTCTACTGA
196 GCTGAATATTTGTTTTAATTTTTACTTGATTTCATCTTTTTCAATTTTTTGACTTTTTCTACTGA
14497500 TTTTTTTGCGGGAAATATTTTTTTATATTCTATCACAATGCCACAAATATACATGAAAAATTTTA
261 TTTTTTTGCGGGAAATATTTTTTTATATTCTATCACAATGCCACAAATATACATGAAAAATTTTA
14497565 GACCAATCGG
326 GACCAATCGG
14497575 AAAAGAAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGTTGATACCCGGAAACCCG
1 AAAAGAAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGTTGATACCCGGAAACCCG
14497640 AAAAAATTGCGCAGTAACTTGACAACTTCGTTCGAGGTGTTTCCGATCTCCAAAAATCATGAAAT
66 AAAAAATTGCGCAGTAACTTGACAACTTCGTTCGAGGTGTTTCCGATCTCCAAAAATCATGAAAT
14497705 TTAAACTAGAATGTCCTTAAATATTTTATATTTGATCTAGAAAGTTTCGGCACTAAACTCAACCC
131 TTAAACTAGAATGTCCTTAAATATTTTATATTTGATCTAGAAAGTTTCGGCACTAAACTCAACCC
14497770 GCTGAATATTTGTTTTAATTTTTACTTGATTTCATCTTTTTCAATTTTTTGACTTTTTCTACTGA
196 GCTGAATATTTGTTTTAATTTTTACTTGATTTCATCTTTTTCAATTTTTTGACTTTTTCTACTGA
14497835 TTTTTTTGCGGGAAATATTTTTTTATATTCTATCACAATGCCACAAATATACATGAAAAATTTTA
261 TTTTTTTGCGGGAAATATTTTTTTATATTCTATCACAATGCCACAAATATACATGAAAAATTTTA
14497900 GACCAATCGG
326 GACCAATCGG
14497910 AAAA
1 AAAA
14497914 TGTTTACCCA
Statistics
Matches: 339, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
335 339 1.00
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (335 bp):
AAAAGAAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGTTGATACCCGGAAACCCG
AAAAAATTGCGCAGTAACTTGACAACTTCGTTCGAGGTGTTTCCGATCTCCAAAAATCATGAAAT
TTAAACTAGAATGTCCTTAAATATTTTATATTTGATCTAGAAAGTTTCGGCACTAAACTCAACCC
GCTGAATATTTGTTTTAATTTTTACTTGATTTCATCTTTTTCAATTTTTTGACTTTTTCTACTGA
TTTTTTTGCGGGAAATATTTTTTTATATTCTATCACAATGCCACAAATATACATGAAAAATTTTA
GACCAATCGG
Found at i:14500041 original size:553 final size:553
Alignment explanation
Indices: 14498995--14500100 Score: 2212
Period size: 553 Copynumber: 2.0 Consensus size: 553
14498985 TTAACAAATT
14498995 GGGCCACTTTGACAAGTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCTTGATTGGGCTTG
1 GGGCCACTTTGACAAGTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCTTGATTGGGCTTG
14499060 GAACATCCTATTGGGTCATTTCTTCAAGCATTTGGGCTTGTAATCCGTTCTCTCCCAAAATTGGT
66 GAACATCCTATTGGGTCATTTCTTCAAGCATTTGGGCTTGTAATCCGTTCTCTCCCAAAATTGGT
14499125 TCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTACAAGATTTGGTTTCTTGGACCAAGA
131 TCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTACAAGATTTGGTTTCTTGGACCAAGA
14499190 TTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGACC
196 TTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGACC
14499255 AAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCCTTTTCCTTCGTG
261 AAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCCTTTTCCTTCGTG
14499320 TATGCATCTAAGGCCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAATGCATTTGTCT
326 TATGCATCTAAGGCCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAATGCATTTGTCT
14499385 TGCCTTTAACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCTATCACGTCCTTGAACTTGAATTG
391 TGCCTTTAACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCTATCACGTCCTTGAACTTGAATTG
14499450 GGCCTTTGTGACTCGTATCATGTTCTTTACCCAAATTTCTTGGATTATTGCTCGGCAAGGTTCCT
456 GGCCTTTGTGACTCGTATCATGTTCTTTACCCAAATTTCTTGGATTATTGCTCGGCAAGGTTCCT
14499515 TGCGGTCTATTATTTAGCTCCATAGCTAACTGG
521 TGCGGTCTATTATTTAGCTCCATAGCTAACTGG
14499548 GGGCCACTTTGACAAGTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCTTGATTGGGCTTG
1 GGGCCACTTTGACAAGTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCTTGATTGGGCTTG
14499613 GAACATCCTATTGGGTCATTTCTTCAAGCATTTGGGCTTGTAATCCGTTCTCTCCCAAAATTGGT
66 GAACATCCTATTGGGTCATTTCTTCAAGCATTTGGGCTTGTAATCCGTTCTCTCCCAAAATTGGT
14499678 TCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTACAAGATTTGGTTTCTTGGACCAAGA
131 TCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTACAAGATTTGGTTTCTTGGACCAAGA
14499743 TTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGACC
196 TTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGACC
14499808 AAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCCTTTTCCTTCGTG
261 AAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCCTTTTCCTTCGTG
14499873 TATGCATCTAAGGCCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAATGCATTTGTCT
326 TATGCATCTAAGGCCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAATGCATTTGTCT
14499938 TGCCTTTAACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCTATCACGTCCTTGAACTTGAATTG
391 TGCCTTTAACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCTATCACGTCCTTGAACTTGAATTG
14500003 GGCCTTTGTGACTCGTATCATGTTCTTTACCCAAATTTCTTGGATTATTGCTCGGCAAGGTTCCT
456 GGCCTTTGTGACTCGTATCATGTTCTTTACCCAAATTTCTTGGATTATTGCTCGGCAAGGTTCCT
14500068 TGCGGTCTATTATTTAGCTCCATAGCTAACTGG
521 TGCGGTCTATTATTTAGCTCCATAGCTAACTGG
14500101 CCCATTTGGT
Statistics
Matches: 553, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
553 553 1.00
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (553 bp):
GGGCCACTTTGACAAGTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTCTTGATTGGGCTTG
GAACATCCTATTGGGTCATTTCTTCAAGCATTTGGGCTTGTAATCCGTTCTCTCCCAAAATTGGT
TCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTACAAGATTTGGTTTCTTGGACCAAGA
TTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGACC
AAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCCTTTTCCTTCGTG
TATGCATCTAAGGCCTTGCTAATAAATTCTTGAATGGTTCCATTTAGTTTTGAATGCATTTGTCT
TGCCTTTAACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCTATCACGTCCTTGAACTTGAATTG
GGCCTTTGTGACTCGTATCATGTTCTTTACCCAAATTTCTTGGATTATTGCTCGGCAAGGTTCCT
TGCGGTCTATTATTTAGCTCCATAGCTAACTGG
Found at i:14502703 original size:11 final size:11
Alignment explanation
Indices: 14502676--14502706 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
14502666 TGAGAATGAA
*
14502676 TGAGGAATGTT
1 TGAGGGATGTT
14502687 TGAGGGATGTT
1 TGAGGGATGTT
14502698 TGAGGGATG
1 TGAGGGATG
14502707 ATGAATGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.45, T:0.32
Consensus pattern (11 bp):
TGAGGGATGTT
Found at i:14506395 original size:50 final size:50
Alignment explanation
Indices: 14506320--14506563 Score: 290
Period size: 50 Copynumber: 4.9 Consensus size: 50
14506310 CATTGAGATT
*
14506320 ATGAAAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
* * *
14506370 ATGAGAGGTCCCATGTAAGATCATGTCTAGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
*
14506420 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCAAG
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
** * ** * * * *
14506470 ATGAGAGGTCCCCCGTAAGACCATGTCTCAGACATGGCATGGGCACCTAT
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
* ** * * * * *
14506520 ATTAGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGC
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGC
14506564 GGTACAAGAA
Statistics
Matches: 166, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 166 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
Found at i:14512998 original size:17 final size:17
Alignment explanation
Indices: 14512976--14513014 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
14512966 CGCTCAATGC
*
14512976 TCAGTGCACTATTTCCA
1 TCAGTGCAATATTTCCA
14512993 TCAGTGCAATATTTCCA
1 TCAGTGCAATATTTCCA
14513010 TCAGT
1 TCAGT
14513015 ACAAAACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (17 bp):
TCAGTGCAATATTTCCA
Found at i:14514471 original size:12 final size:12
Alignment explanation
Indices: 14514415--14514473 Score: 50
Period size: 12 Copynumber: 4.8 Consensus size: 12
14514405 GATTATTCCC
*
14514415 TAAATAAATA-A
1 TAAATAAAAATA
14514426 TAAAT-AAAATA
1 TAAATAAAAATA
14514437 TAACTATAAATAATA
1 TAA--ATAAA-AATA
**
14514452 TATTTAAAAATA
1 TAAATAAAAATA
14514464 TAAATAAAAA
1 TAAATAAAAA
14514474 ATTCAAGAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
10 3 0.08
11 9 0.24
12 12 0.32
13 6 0.16
14 2 0.05
15 6 0.16
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAATAAAAATA
Found at i:14516497 original size:20 final size:19
Alignment explanation
Indices: 14516472--14516528 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
14516462 GATTGGATTA
14516472 TAATTTAGCTTAATTAACCT
1 TAATTTA-CTTAATTAACCT
14516492 TAATTTTA-TTAATTAAACCT
1 TAA-TTTACTTAATT-AACCT
*
14516512 TATTTTACTTAAGTTAA
1 TAATTTACTTAA-TTAA
14516529 TGGTCCCCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
19 10 0.31
20 16 0.50
21 6 0.19
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.49
Consensus pattern (19 bp):
TAATTTACTTAATTAACCT
Found at i:14516505 original size:19 final size:19
Alignment explanation
Indices: 14516475--14516528 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 19
14516465 TGGATTATAA
14516475 TTTAGCTTAATTAACCTTAAT
1 TTTA-CTTAATTAACCTT-AT
14516496 TTTA-TTAATTAAACCTTAT
1 TTTACTTAATT-AACCTTAT
14516515 TTTACTTAAGTTAA
1 TTTACTTAA-TTAA
14516529 TGGTCCCCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
19 12 0.40
20 12 0.40
21 6 0.20
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.50
Consensus pattern (19 bp):
TTTACTTAATTAACCTTAT
Found at i:14518943 original size:213 final size:213
Alignment explanation
Indices: 14518576--14519001 Score: 843
Period size: 213 Copynumber: 2.0 Consensus size: 213
14518566 CTGAATTGAA
14518576 GTGAATTCAATGATAGAGTTAATTGGTTCAAGAATGCCAAGAGACTTGAACTTTATTTTAGCGTT
1 GTGAATTCAATGATAGAGTTAATTGGTTCAAGAATGCCAAGAGACTTGAACTTTATTTTAGCGTT
14518641 TAATTAGCACACTAAGATCAATGCTTGTGACTATTCGGCTACTCTATTCTAGCACTATAAATAGG
66 TAATTAGCACACTAAGATCAATGCTTGTGACTATTCGGCTACTCTATTCTAGCACTATAAATAGG
14518706 TGAAATTAAACTTTGTAATAGAAATGATAAGATCCAACCTCGTGTTTGATTTCAAGTCATATTTG
131 TGAAATTAAACTTTGTAATAGAAATGATAAGATCCAACCTCGTGTTTGATTTCAAGTCATATTTG
14518771 CGTGCGCGATCGTCGACG
196 CGTGCGCGATCGTCGACG
14518789 GTGAATTCAATGATAGAGTTAATTGGTTCAAGAATGCCAAGAGACTTGAACTTTATTTTAGCGTT
1 GTGAATTCAATGATAGAGTTAATTGGTTCAAGAATGCCAAGAGACTTGAACTTTATTTTAGCGTT
14518854 TAATTAGCACACTAAGATCAATGCTTGTGACTATTCGGCTACTCTATTCTAGCACTATAAATAGG
66 TAATTAGCACACTAAGATCAATGCTTGTGACTATTCGGCTACTCTATTCTAGCACTATAAATAGG
*
14518919 TGAAATTAAACTTTGTAATAGAAATGATAAGATCCAACCTCGTGTTTGATTTCAAGTCGTATTTG
131 TGAAATTAAACTTTGTAATAGAAATGATAAGATCCAACCTCGTGTTTGATTTCAAGTCATATTTG
14518984 CGTGCGCGATCGTCGACG
196 CGTGCGCGATCGTCGACG
14519002 AGAAAGTATC
Statistics
Matches: 212, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 212 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (213 bp):
GTGAATTCAATGATAGAGTTAATTGGTTCAAGAATGCCAAGAGACTTGAACTTTATTTTAGCGTT
TAATTAGCACACTAAGATCAATGCTTGTGACTATTCGGCTACTCTATTCTAGCACTATAAATAGG
TGAAATTAAACTTTGTAATAGAAATGATAAGATCCAACCTCGTGTTTGATTTCAAGTCATATTTG
CGTGCGCGATCGTCGACG
Found at i:14521776 original size:13 final size:13
Alignment explanation
Indices: 14521758--14521782 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14521748 TAATTTATAT
14521758 GTGTGAAAATTTC
1 GTGTGAAAATTTC
14521771 GTGTGAAAATTT
1 GTGTGAAAATTT
14521783 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:14523697 original size:27 final size:27
Alignment explanation
Indices: 14523678--14523942 Score: 368
Period size: 27 Copynumber: 9.8 Consensus size: 27
14523668 ATTACCAAAG
*
14523678 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
14523705 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
14523732 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
14523759 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
14523786 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
14523813 TACCCTCGACTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
14523840 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
14523867 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
14523894 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
14523921 TACTCTCGATTTATAAAATTAC
1 TACCCTCGATTTACAGAATTAC
14523943 TGAAATACCC
Statistics
Matches: 216, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 216 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:14523769 original size:81 final size:81
Alignment explanation
Indices: 14523678--14523942 Score: 422
Period size: 81 Copynumber: 3.3 Consensus size: 81
14523668 ATTACCAAAG
* *
14523678 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCATCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
14523743 TATAGAATTACCGTTT
66 TATAGAATTACCGTTT
*
14523759 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGACT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
14523824 TATAGAATTACCGTTT
66 TATAGAATTACCGTTT
* ** *
14523840 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
* *
14523905 TACAGAATTACCATTT
66 TATAGAATTACCGTTT
* * *
14523921 TACTCTCGATTTATAAAATTAC
1 TACCCTCGATTTACAGAATTAC
14523943 TGAAATACCC
Statistics
Matches: 171, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 171 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TATAGAATTACCGTTT
Found at i:14523960 original size:27 final size:27
Alignment explanation
Indices: 14523934--14524140 Score: 281
Period size: 27 Copynumber: 7.7 Consensus size: 27
14523924 TCTCGATTTA
** * * *
14523934 TAAAATTACTGAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTAGTTTG
* * ***
14523961 CAAAATTACCAAAATA-CCCTCGATCAA
1 TAAAATTACCAAAATACCCCTAG-TTTG
14523988 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
14524015 TAAAATTACTAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
14524042 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
14524069 TAAAATTACTAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
14524096 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
14524123 TAAAATTACCAAATTACC
1 TAAAATTACCAAAATACC
14524141 AATTTGCGAA
Statistics
Matches: 161, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
26 4 0.02
27 152 0.94
28 5 0.03
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:14524220 original size:27 final size:27
Alignment explanation
Indices: 14524182--14524398 Score: 292
Period size: 27 Copynumber: 8.0 Consensus size: 27
14524172 TGTAAAATAT
*
14524182 CGAAATACCCCTGTAGGATAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
14524209 CGAAGTACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
14524236 TGAAATACCCCTGTATGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
14524263 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
14524290 TGAAATATCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
14524317 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
14524344 CGAAATACCCCTATAGGGTAGAACTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
14524371 CGAGAA-ACCCTTGTGGGGTAAAATTAC
1 CGA-AATACCCCTGTAGGGTAGAATTAC
14524398 C
1 C
14524399 ATTTTGCCCC
Statistics
Matches: 166, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 164 0.99
28 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:14524658 original size:24 final size:25
Alignment explanation
Indices: 14524601--14524669 Score: 113
Period size: 24 Copynumber: 2.8 Consensus size: 25
14524591 AGGAAGTGCT
* *
14524601 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTC
14524626 AAAAGGGCTTTGCCCCAGTTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTACTC
14524650 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
14524670 ATTAAAAAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 21 0.50
25 21 0.50
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTC
Found at i:14524677 original size:24 final size:24
Alignment explanation
Indices: 14524601--14524682 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
14524591 AGGAAGTGCT
* * *
14524601 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAG-TTATTA
*
14524626 AAAAGGGCTTTGCCCCAGTT-TATC
1 AAAAGGGCTTTGCCCCAGTTAT-TA
14524650 AAAAGGGCTTTGCCCCAGTTATTA
1 AAAAGGGCTTTGCCCCAGTTATTA
*
14524674 AAAAAGGCT
1 AAAAGGGCT
14524683 AGGTCTCCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
24 32 0.64
25 18 0.36
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATTA
Found at i:14525793 original size:43 final size:43
Alignment explanation
Indices: 14525631--14525793 Score: 120
Period size: 43 Copynumber: 3.8 Consensus size: 43
14525621 CATAGGATTC
* * * * * *
14525631 CGATAGGTGA-TTTCATGTAAGACTACGTTTGAGACGTTGGCAT
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGAAG-TGGCAT
* * * *
14525674 CGATTTGTGATTTACATGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGA-AGTGGCAT
* ** *
14525718 C-ATATATGAGTT-TGTGTAAGACC-CTGTCTGGGATAGAGGCAT
1 CGATATGTGAGTTACATGTAAGACCAC-GTCTGGGA-AGTGGCAT
*
14525760 CGATATGTGA-TTACATGTAAGACCACGTTTGGGA
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGA
14525794 CATTAGCGTT
Statistics
Matches: 92, Mismatches: 22, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
42 26 0.28
43 39 0.42
44 27 0.29
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (43 bp):
CGATATGTGAGTTACATGTAAGACCACGTCTGGGAAGTGGCAT
Found at i:14526492 original size:13 final size:13
Alignment explanation
Indices: 14526474--14526503 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14526464 TTGGGTAAGT
14526474 TTGATACATGTGG
1 TTGATACATGTGG
*
14526487 TTGATACATGTGT
1 TTGATACATGTGG
14526500 TTGA
1 TTGA
14526504 GATATGGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (13 bp):
TTGATACATGTGG
Found at i:14528553 original size:48 final size:48
Alignment explanation
Indices: 14528478--14528594 Score: 128
Period size: 48 Copynumber: 2.4 Consensus size: 48
14528468 GTACCTATAC
* * * * * *
14528478 CATGGCTCGAAGCCAAATCAAGGTAACTTATATCCAAAGTACTGATAT
1 CATGGCCCGAAGCCAAATCAAGATAACTCACACCCAAAGTACTAATAT
* * *
14528526 CATGGCCCGAAGCCAAATC-AGTATAACTCGCACCCGAAGTGCTAATAT
1 CATGGCCCGAAGCCAAATCAAG-ATAACTCACACCCAAAGTACTAATAT
*
14528574 CATGGCCCGAAGCCAACTCAA
1 CATGGCCCGAAGCCAAATCAA
14528595 TGTATCCCCT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
47 2 0.04
48 54 0.95
49 1 0.02
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (48 bp):
CATGGCCCGAAGCCAAATCAAGATAACTCACACCCAAAGTACTAATAT
Found at i:14536990 original size:40 final size:40
Alignment explanation
Indices: 14536931--14537038 Score: 198
Period size: 40 Copynumber: 2.7 Consensus size: 40
14536921 GAGCATTGGA
*
14536931 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
14536971 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
14537011 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
14537039 ATGTGTTTGC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:14546925 original size:44 final size:44
Alignment explanation
Indices: 14546861--14547021 Score: 247
Period size: 44 Copynumber: 3.7 Consensus size: 44
14546851 CAGTTAGCTG
14546861 AAGCTAGAAT-ATTCCGCACACTTAGTGCCATCTCAATTAACCA
1 AAGCTAGAATGATTCCGCACACTTAGTGCCATCTCAATTAACCA
14546904 AAGCTAGAATGATTCCGCACACTTAGTGCCATCTCAATTAACCA
1 AAGCTAGAATGATTCCGCACACTTAGTGCCATCTCAATTAACCA
* **
14546948 AAGCTAGAACGATTCCGCACACTTAGTGCCATCTCAATTAACTG
1 AAGCTAGAATGATTCCGCACACTTAGTGCCATCTCAATTAACCA
*
14546992 AAGCTA-AATCGGTAT-CGCACACTTAGTGCC
1 AAGCTAGAAT-GAT-TCCGCACACTTAGTGCC
14547022 TCATATAGTC
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
43 12 0.11
44 97 0.88
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (44 bp):
AAGCTAGAATGATTCCGCACACTTAGTGCCATCTCAATTAACCA
Found at i:14550913 original size:44 final size:43
Alignment explanation
Indices: 14550774--14550928 Score: 183
Period size: 43 Copynumber: 3.6 Consensus size: 43
14550764 CATATACAAC
* *
14550774 GCCAACGTCCCAGACATGGTCTTACATGT-AATCAAACATTGAT
1 GCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATCGAT
* *
14550817 GCC-ACTGTCCCAAACAGGGTCTTACACG-AAATC-AAATACGAT
1 GCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAAT-CGAT
* * *
14550859 GCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAAGTCAAT
1 GCCAACGTCCCAGACATGGTCTTACACGTAAATCAAAA-TCGAT
14550903 GCCAACGTCCCAGACATGGTCTTACA
1 GCCAACGTCCCAGACATGGTCTTACA
14550929 TGATATCACA
Statistics
Matches: 95, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 31 0.33
44 31 0.33
45 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (43 bp):
GCCAACGTCCCAGACATGGTCTTACACGTAAATCAAAATCGAT
Found at i:14556225 original size:18 final size:18
Alignment explanation
Indices: 14556159--14556225 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
14556149 CTTGGCCAAT
*
14556159 TGCAGTAACAATAA-ACAG
1 TGCAGTAACAGTAATA-AG
* *
14556177 TGCAGTAATAGTAATCAG
1 TGCAGTAACAGTAATAAG
* * *
14556195 TGCAGCAATAGTAATAAA
1 TGCAGTAACAGTAATAAG
14556213 TGCAGTAACAGTA
1 TGCAGTAACAGTA
14556226 TACAAGTCCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAGTAATAAG
Found at i:14556604 original size:27 final size:27
Alignment explanation
Indices: 14556542--14556611 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
14556532 CCTTACATAG
* *
14556542 GGGCAAAACAGTCATCTTACCATACAA
1 GGGCAAAATAGTCATTTTACCATACAA
*
14556569 GGGCAAAATAGTCATTTTACCATATAA
1 GGGCAAAATAGTCATTTTACCATACAA
*
14556596 GGGCAAAATAGCCATT
1 GGGCAAAATAGTCATT
14556612 CTATCGATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCATACAA
Found at i:14561786 original size:19 final size:18
Alignment explanation
Indices: 14561745--14561793 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
14561735 GTTTGAAATG
14561745 ATTCATA-ATAAGTTGAT
1 ATTCATATATAAGTTGAT
14561762 ATTCATATATATATGTTGA-
1 ATTCATATATA-A-GTTGAT
*
14561781 ATTCATGTATAAG
1 ATTCATATATAAG
14561794 GTAGCATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 8 0.29
18 4 0.14
19 11 0.39
20 5 0.18
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (18 bp):
ATTCATATATAAGTTGAT
Done.