Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 50 of 126
Found at i:14562444 original size:39 final size:39
Alignment explanation
Indices: 14562390--14562526 Score: 193
Period size: 39 Copynumber: 3.5 Consensus size: 39
14562380 ATTTGAAAAT
*
14562390 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCAGGAAA
14562429 TATATCCGGACTTAAAGTCCGCAGGCTATATGCAGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCAGGAAA
* * * ** * *
14562468 TATATTCGGACTTCAGGTCCGCAGGCTACGTACTGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCAGGAAA
*
14562507 TATATCCGGGCTTAAAGTCC
1 TATATCCGGACTTAAAGTCC
14562527 CGAAGGCTTA
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATATGCAGGAAA
Found at i:14566099 original size:27 final size:27
Alignment explanation
Indices: 14566061--14566126 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
14566051 TTACCTAGAC
*
14566061 CCCCTAAT-TGATAAAATGACTATTACG
1 CCCCT-ATGTGATAAAATAACTATTACG
* *
14566088 CCCCTATGTGATAAAATAACTGTTATG
1 CCCCTATGTGATAAAATAACTATTACG
14566115 CCCCTATGTGAT
1 CCCCTATGTGAT
14566127 GGATGACTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (27 bp):
CCCCTATGTGATAAAATAACTATTACG
Found at i:14567786 original size:48 final size:48
Alignment explanation
Indices: 14567688--14567913 Score: 209
Period size: 48 Copynumber: 4.8 Consensus size: 48
14567678 CATGGCAGTA
* * * *
14567688 CATGTGATCCTATATAAGACCATATCTGGGATATGGCA-TCG----A-
1 CATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCAG
*
14567730 CATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCTCATCAG
1 CATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCAG
* * *
14567778 CATGTGATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCGG
1 CATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCAG
* * * * * *
14567826 TATGTGATCCCATGTAAGACCATATCTGGGATATGGAATTGGTATC-G
1 CATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCAG
* **
14567873 ATATGTGATTTCATGTAAGACCATAG-CTGGG-CTATGGCATT
1 -CATGTGATCCCATGTAAGACCAT-GTCTGGGAC-ATGGCATT
14567914 GTGACGACAT
Statistics
Matches: 155, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
42 34 0.22
43 2 0.01
47 2 0.01
48 117 0.75
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (48 bp):
CATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCAG
Found at i:14567879 original size:96 final size:96
Alignment explanation
Indices: 14567721--14567914 Score: 234
Period size: 96 Copynumber: 2.0 Consensus size: 96
14567711 ATCTGGGATA
* *
14567721 TGGCATCGACATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCTCATCAGCATGTGAT
1 TGGCATCGACATGTGATCCCATGTAAGACCATATCTGGGACATGGAATTCTCATCAGCATGTGAT
*
14567786 CCCATGTAAGACTAT-GTCTGGGAC-ATGGCAT
66 CCCATGTAAGACCATAG-CTGGG-CTATGGCAT
** * * *
14567817 TGGCATCGGTATGTGATCCCATGTAAGACCATATCTGGGATATGGAATTGGT-ATC-GATATGTG
1 TGGCATCGACATGTGATCCCATGTAAGACCATATCTGGGACATGGAATT-CTCATCAG-CATGTG
**
14567880 ATTTCATGTAAGACCATAGCTGGGCTATGGCAT
64 ATCCCATGTAAGACCATAGCTGGGCTATGGCAT
14567913 TG
1 TG
14567915 TGACGACATG
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
95 2 0.02
96 80 0.95
97 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (96 bp):
TGGCATCGACATGTGATCCCATGTAAGACCATATCTGGGACATGGAATTCTCATCAGCATGTGAT
CCCATGTAAGACCATAGCTGGGCTATGGCAT
Found at i:14567945 original size:36 final size:37
Alignment explanation
Indices: 14567884--14567953 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 37
14567874 TATGTGATTT
*
14567884 CATGTAAGACCATAGCTGGGCTATGGCATTGTGACGA
1 CATGTAAGACCATAGCTAGGCTATGGCATTGTGACGA
*
14567921 CATGTAA-ACCATAGCTAGGTTATGGCATTGTGA
1 CATGTAAGACCATAGCTAGGCTATGGCATTGTGA
14567954 TATGAGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 24 0.77
37 7 0.23
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (37 bp):
CATGTAAGACCATAGCTAGGCTATGGCATTGTGACGA
Found at i:14569543 original size:46 final size:46
Alignment explanation
Indices: 14569476--14569743 Score: 300
Period size: 46 Copynumber: 5.8 Consensus size: 46
14569466 TGTAACCCGC
14569476 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
14569522 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
*
14569572 -C-TAA-CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
14569615 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * *
14569665 -C-TAA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
14569708 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
14569744 ATGCCCAAAT
Statistics
Matches: 189, Mismatches: 15, Indels: 36
0.79 0.06 0.15
Matches are distributed among these distances:
42 5 0.03
43 6 0.03
44 4 0.02
45 7 0.04
46 90 0.48
47 53 0.28
48 8 0.04
49 4 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:14569596 original size:93 final size:93
Alignment explanation
Indices: 14569484--14569748 Score: 485
Period size: 93 Copynumber: 2.8 Consensus size: 93
14569474 GCCCATAAGT
14569484 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
14569549 CGAGCTCGGATGCCTAGTTACATCTAAC
66 CGAGCTCGGATGCCTAGTTACATCTAAC
14569577 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
14569642 CGAGCTCGGATGCCTAGTTACATCTAAC
66 CGAGCTCGGATGCCTAGTTACATCTAAC
* * * *
14569670 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
14569735 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
14569749 CAAATATCCT
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 167 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTAAC
Found at i:14581516 original size:67 final size:67
Alignment explanation
Indices: 14581408--14581583 Score: 334
Period size: 67 Copynumber: 2.6 Consensus size: 67
14581398 ACAGATATAT
* *
14581408 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGACTAAGTCACTAGAAC
1 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGACTAAGTCACTAGAAC
14581473 AG
66 AG
14581475 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGACTAAGTCACTAGAAC
1 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGACTAAGTCACTAGAAC
14581540 AG
66 AG
14581542 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
1 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
14581584 ACGCTTCCTC
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 107 1.00
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (67 bp):
ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTATGACTAAGTCACTAGAAC
AG
Found at i:14584066 original size:49 final size:48
Alignment explanation
Indices: 14583990--14584215 Score: 146
Period size: 46 Copynumber: 4.7 Consensus size: 48
14583980 TGGGGTAACT
* *
14583990 GCCGATGCCATGTCCCCGACATAGTCTTACACTGGCTAT-CATCACTGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATACATCACTGAG
* * * * *
14584039 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTTTTGCAT-A-TCCAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-TATACATCACT-GAG
** * * * *
14584089 GTTGATGACATGTCCCAGACGTGGTCTTACACTA---ACACATCGCTTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATACATCACTGAG
** * * * *
14584135 GTTGATGCATGTCCCAAACATGTCTTACACTGGCT-TACATC-TTGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATACATCACTGAG
14584181 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
14584216 CACACAAGTG
Statistics
Matches: 140, Mismatches: 28, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
44 10 0.07
45 13 0.09
46 46 0.33
47 1 0.01
48 1 0.01
49 33 0.24
50 33 0.24
51 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATACATCACTGAG
Found at i:14595891 original size:15 final size:14
Alignment explanation
Indices: 14595873--14595923 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
14595863 CATAACAGAG
14595873 AAATCCAGAATATAA
1 AAATCCAGAATA-AA
*
14595888 AAATCCAGCATAAA
1 AAATCCAGAATAAA
* *
14595902 AAATCCAAAACAAGA
1 AAATCCAGAATAA-A
14595917 AAATCCA
1 AAATCCA
14595924 ATCACGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.61, C:0.20, G:0.06, T:0.14
Consensus pattern (14 bp):
AAATCCAGAATAAA
Found at i:14599897 original size:54 final size:54
Alignment explanation
Indices: 14599815--14599944 Score: 206
Period size: 54 Copynumber: 2.4 Consensus size: 54
14599805 CTTACAGTGA
* * *
14599815 GATTACCAGTCTAGGCTAAATCCCCTGTAACATAAACTCATAGGCTATTATCGG
1 GATTACCAGTCCAGGCTAAATCCCCTGTAACATAAACCCATAGGCTATTATCAG
* * *
14599869 GATTACCAGTCCAGGCTAAATCCCCTGTAACATAAACCCATAGGGTATTTTTAG
1 GATTACCAGTCCAGGCTAAATCCCCTGTAACATAAACCCATAGGCTATTATCAG
14599923 GATTACCAGTCCAGGCTAAATC
1 GATTACCAGTCCAGGCTAAATC
14599945 TCCTACAATG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (54 bp):
GATTACCAGTCCAGGCTAAATCCCCTGTAACATAAACCCATAGGCTATTATCAG
Found at i:14602286 original size:42 final size:42
Alignment explanation
Indices: 14602182--14602336 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 42
14602172 TGTGATATCA
* * *
14602182 TGTAAGACCATGTCTGGGACGTTGGCATTG-ACTTTTGTTTTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTA--TTTGATTT-CG
14602226 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTCG
* * * * * * *
14602268 TGTAAGACCCTGTTTGGGACAGTGGCATCAATGTTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-GTATTTGATTTCG
*
14602311 TGTAAGACCATGTCTGGGACGTTGGC
1 TGTAAGACCATGTCTGGGACATTGGC
14602337 GTTGTATATG
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
42 28 0.29
43 38 0.40
44 28 0.29
45 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTCG
Found at i:14606138 original size:44 final size:43
Alignment explanation
Indices: 14606089--14606208 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 43
14606079 GACTATATGA
14606089 GGCACTAAGTGTGCGATACCGATT-TAGCTTCAGTTAATTGAGAT
1 GGCACTAAGTGTGCGA-ACCG-TTCTAGCTTCAGTTAATTGAGAT
* **
14606133 GGCACTAAGTGTGCGGAATCGTTCTAGCTTTGGTTAATTGAGAT
1 GGCACTAAGTGTGC-GAACCGTTCTAGCTTCAGTTAATTGAGAT
**
14606177 GGCACTAAGTGTGCGGAA-TATTCTAGCTTCAG
1 GGCACTAAGTGTGC-GAACCGTTCTAGCTTCAG
14606209 CTAACTGTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
43 12 0.18
44 53 0.79
45 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (43 bp):
GGCACTAAGTGTGCGAACCGTTCTAGCTTCAGTTAATTGAGAT
Found at i:14607690 original size:40 final size:40
Alignment explanation
Indices: 14607645--14607952 Score: 517
Period size: 40 Copynumber: 7.7 Consensus size: 40
14607635 GCAAACACAT
* * *
14607645 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
14607685 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
**
14607725 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
14607765 TTGCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
14607805 TTGCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
*
14607845 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
* *
14607885 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
14607925 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCATAGCCCGGATATAT
14607953 TCCAATGCTC
Statistics
Matches: 258, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 258 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
Found at i:14616311 original size:40 final size:40
Alignment explanation
Indices: 14616266--14616533 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
14616256 GCAAACACAT
* *
14616266 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
14616306 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
*
14616346 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
* *
14616386 TTGCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
*
14616426 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
*
14616466 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
*
14616506 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
14616534 TCCAATGCTC
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
Found at i:14621158 original size:19 final size:19
Alignment explanation
Indices: 14621122--14621160 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14621112 TTTTCATCAT
* *
14621122 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
14621141 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
14621160 A
1 A
14621161 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:14625758 original size:34 final size:33
Alignment explanation
Indices: 14625685--14625767 Score: 94
Period size: 34 Copynumber: 2.5 Consensus size: 33
14625675 CTGTATTAAA
* **
14625685 ATGGGCTAAGGCCTACACTGATACTATTACTGT
1 ATGGGCTAAGGCCCACACTGATACTACGACTGT
* *
14625718 ATTGGGCTAAGGCCCACACTGATATTGCGACTGAT
1 A-TGGGCTAAGGCCCACACTGATACTACGACTG-T
*
14625753 ATGGGCTTAGGCCCA
1 ATGGGCTAAGGCCCA
14625768 AACTATTCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
33 1 0.02
34 39 0.93
35 2 0.05
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (33 bp):
ATGGGCTAAGGCCCACACTGATACTACGACTGT
Found at i:14636193 original size:40 final size:40
Alignment explanation
Indices: 14636146--14636290 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
14636136 CTCGCACAAG
* * * * *
14636146 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
14636186 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
14636226 GCCTTC-GGATCTTAGTCCAGATGTAGTCGCTAAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCT-AGCACAAAT
14636267 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
14636291 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.66
41 25 0.28
42 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:14641320 original size:45 final size:45
Alignment explanation
Indices: 14641175--14641387 Score: 179
Period size: 45 Copynumber: 4.9 Consensus size: 45
14641165 TAATTGAACA
* * * * * *
14641175 ATGCCAACGTCCCAGACGTGGTCTTACATGATATCTC--ATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
* * * * *
14641218 AAGCC-ACTATCCCAGACAGGGTCTTACA-GGAATCA-A-ATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAAACACATATATCG
* * * * * *
14641259 ATGTCGATGTCCCAGACATGGTCTTACACGTAACCACATATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
14641304 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
** * *
14641349 ATGCCAACGTCCCAGATGTGGTCATACATGAAAACACAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
14641388 CAGAATCCTA
Statistics
Matches: 137, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
41 22 0.16
42 15 0.11
43 22 0.16
44 3 0.02
45 75 0.55
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (45 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
Found at i:14642288 original size:18 final size:19
Alignment explanation
Indices: 14642246--14642288 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
14642236 TAATATCTAA
*
14642246 TTAACATATATAACCTTATT
1 TTAAAATATATAACC-TATT
*
14642266 ATAAAATATATAACC-ATT
1 TTAAAATATATAACCTATT
14642284 TTAAA
1 TTAAA
14642289 TCATGGCCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.35
20 13 0.65
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAAAATATATAACCTATT
Found at i:14659502 original size:42 final size:41
Alignment explanation
Indices: 14659385--14659503 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 41
14659375 CGAAAAGCTC
* * * *
14659385 ATACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCC-ATGTCCCAGACATGGTCTTACACGAAATCAA
* * *
14659427 ATATTGATGCCACTATCCCAGACA-GAGTCTTACACGAAATCAT
1 ATA-CGATGCCA-TGTCCCAGACATG-GTCTTACACGAAATCAA
*
14659470 ATACGATGCCGATGTCCCAGACATGGTTTTACAC
1 ATACGATGCC-ATGTCCCAGACATGGTCTTACAC
14659504 TTAATCTCGA
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
42 29 0.47
43 33 0.53
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
ATACGATGCCATGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:14660897 original size:47 final size:47
Alignment explanation
Indices: 14660844--14660974 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
14660834 GTGCGAATAA
* * *
14660844 TACCTTGATTTGGCTATGGGCCATGCTATAGGTA-TTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTC-GAGAGAAGT
* * *
14660891 TACCTTGATTTGGTTACGGGCCATGGTATAGGTACTTCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCGAGAGAAGT
* *
14660938 TTCCTTGATTTGGCTACGAGCCATGGTATAGGTACTT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTT
14660975 ATCGATTATA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 71 0.96
48 3 0.04
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCGAGAGAAGT
Found at i:14662669 original size:21 final size:20
Alignment explanation
Indices: 14662621--14662661 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14662611 CTAAACCGAT
*
14662621 CACATATAAAAATTTCTGAA
1 CACATAGAAAAATTTCTGAA
*
14662641 CACTTAGAAAAATTTCATGAA
1 CACATAGAAAAATTTC-TGAA
14662662 ATCATAGATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (20 bp):
CACATAGAAAAATTTCTGAA
Found at i:14665633 original size:23 final size:23
Alignment explanation
Indices: 14665602--14665754 Score: 164
Period size: 23 Copynumber: 6.7 Consensus size: 23
14665592 GGAATCTATA
14665602 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* * * *
14665625 GGCTGCAATATAGTTGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
* *
14665648 GGCTAC-ATCTCAATGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
14665671 GGCTACAATACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
14665694 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* ** *
14665717 AGCTACGTTACAGTGATAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* * *
14665740 GACTATATTACAGTG
1 GGCTACAATACAGTG
14665755 TGGAAATTTG
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
22 2 0.02
23 102 0.96
24 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (23 bp):
GGCTACAATACAGTGGTAGCTTC
Found at i:14665737 original size:69 final size:69
Alignment explanation
Indices: 14665602--14665754 Score: 182
Period size: 69 Copynumber: 2.2 Consensus size: 69
14665592 GGAATCTATA
* * * ** *
14665602 GGCTACAATACAGTGGTAGCTTCGGCTGCAATATAGTTGTAGCTTTGGCTACATCTCAATGGTAG
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCAGCTACATCTCAATGATAG
14665667 CTTC
66 CTTC
* * *
14665671 GGCTACAATACAGTGGTAGCTTTGGCTACAATACAGTGGTAGCTTCAGCTACGT-TACAGTGATA
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCAGCTACATCT-CAATGATA
14665735 GCTTC
65 GCTTC
* * *
14665740 GACTATATTACAGTG
1 GGCTACAATACAGTG
14665755 TGGAAATTTG
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
68 1 0.01
69 70 0.99
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (69 bp):
GGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCAGCTACATCTCAATGATAG
CTTC
Found at i:14668067 original size:27 final size:27
Alignment explanation
Indices: 14668037--14668117 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
14668027 AATCTCATAT
* *
14668037 CTGTAGGCTAGTATTACTGAAACACCC
1 CTGTAGGCTAGAATTACTGAAATACCC
*
14668064 CTGTAGGCTAGAATTACTGAAATGCCC
1 CTGTAGGCTAGAATTACTGAAATACCC
*
14668091 CTGTAAGG-TAGAATTACTAAAATACCC
1 CTGT-AGGCTAGAATTACTGAAATACCC
14668118 TTGCTTTACA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 45 0.94
28 3 0.06
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (27 bp):
CTGTAGGCTAGAATTACTGAAATACCC
Found at i:14668132 original size:27 final size:27
Alignment explanation
Indices: 14668102--14668469 Score: 216
Period size: 27 Copynumber: 13.7 Consensus size: 27
14668092 TGTAAGGTAG
*
14668102 AATTACTAAAATACCCTTGCTTTACAA
1 AATTACTAAAATACCCTTGATTTACAA
* * * *
14668129 AATTACT-GAATAACTTTGGTTTACAA
1 AATTACTAAAATACCCTTGATTTACAA
14668155 AATTACTAAAATA-CCTTCGA-TTAGCAA
1 AATTACTAAAATACCCTT-GATTTA-CAA
* * * **
14668182 AATTGCCAAAATACCCCTG-TTTGTAA
1 AATTACTAAAATACCCTTGATTTACAA
* * * **
14668208 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACTAAAATACCCTTGATTTACAA
* * **
14668235 AATTACT-AAATACCCTTAACTTGTAA
1 AATTACTAAAATACCCTTGATTTACAA
* ** **
14668261 AATTACTGAAATACCCTCAATTTTTAA
1 AATTACTAAAATACCCTTGATTTACAA
* * * **
14668288 AATTACCAAAATACCCCTAATTTGGAA
1 AATTACTAAAATACCCTTGATTTACAA
* *
14668315 AATTACCAAAATACCCTTGATTTAGAA
1 AATTACTAAAATACCCTTGATTTACAA
*
14668342 AATTA-TAGAAATACCCCTGATTTACAA
1 AATTACTA-AAATACCCTTGATTTACAA
14668369 AATTAC-AGAAATACCCTTGACTTT-CAAA
1 AATTACTA-AAATACCCTTGA-TTTAC-AA
* ** *
14668397 AATTACAAAAATACTATTGGTTTGA-AA
1 AATTACTAAAATACCCTTGATTT-ACAA
* **
14668424 AATTA-TCGAAATACCCTTGATTTGTAA
1 AATTACT-AAAATACCCTTGATTTACAA
* * *
14668451 ATTTACCAAAACACCCTTG
1 AATTACTAAAATACCCTTG
14668470 TAAGGTGAAA
Statistics
Matches: 278, Mismatches: 46, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
26 72 0.26
27 182 0.65
28 23 0.08
29 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGATTTACAA
Found at i:14668140 original size:26 final size:27
Alignment explanation
Indices: 14668102--14668171 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 27
14668092 TGTAAGGTAG
*
14668102 AATTACTAAAATACCCTTGCTTTACAA
1 AATTACTAAAATAACCTTGCTTTACAA
* * *
14668129 AATTACT-GAATAACTTTGGTTTACAA
1 AATTACTAAAATAACCTTGCTTTACAA
14668155 AATTACTAAAAT-ACCTT
1 AATTACTAAAATAACCTT
14668172 CGATTAGCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
26 26 0.72
27 10 0.28
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.36
Consensus pattern (27 bp):
AATTACTAAAATAACCTTGCTTTACAA
Found at i:14668210 original size:53 final size:53
Alignment explanation
Indices: 14668153--14668383 Score: 173
Period size: 53 Copynumber: 4.3 Consensus size: 53
14668143 TTTGGTTTAC
* * * *
14668153 AAAATTACTAAAATACCTTCGATTAGCAAAATTGCCAAAATACCCCT-GTTTGT
1 AAAATTACCAAAATACCTTCAATTAGTAAAATT-CCAAAATACCCCTAATTTGT
* * * * * *
14668206 AAAATTACCAAAATACC-CCTAATTTGTAAAATTACTAAATACCCTTAACTTGT
1 AAAATTACCAAAATACCTTC-AATTAGTAAAATTCCAAAATACCCCTAATTTGT
** * ** *
14668259 AAAATTACTGAAATACCCTCAATTTTTAAAATTACCAAAATACCCCTAATTTGG
1 AAAATTACCAAAATACCTTCAATTAGTAAAATT-CCAAAATACCCCTAATTTGT
* * ** * **
14668313 AAAATTACCAAAATACCCTTGATTTAG-AAAATTATAGAAATACCCCTGATTTAC
1 AAAATTACCAAAATA-CCTTCAATTAGTAAAATTCCA-AAATACCCCTAATTTGT
14668367 AAAATTA-CAGAAATACC
1 AAAATTACCA-AAATACC
14668384 CTTGACTTTC
Statistics
Matches: 140, Mismatches: 31, Indels: 14
0.76 0.17 0.08
Matches are distributed among these distances:
52 11 0.08
53 62 0.44
54 61 0.44
55 6 0.04
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCTTCAATTAGTAAAATTCCAAAATACCCCTAATTTGT
Found at i:14668381 original size:81 final size:80
Alignment explanation
Indices: 14668190--14668466 Score: 267
Period size: 82 Copynumber: 3.4 Consensus size: 80
14668180 AAAATTGCCA
* * * *
14668190 AAATACCCCTG-TTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTA-CTAAATACCCTTA
1 AAATACCCCTGATTTATAAAATTACCAAAATACCCCTAATTTGAAAAATTACCAAAATACCCTTG
* *
14668253 ACTTGTAAAATTACTG
66 ATTTGAAAAATTA-TG
* * *
14668269 AAATA-CCCTCAATTTTTAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCTT
1 AAATACCCCT-GATTTATAAAATTACCAAAATACCCCTAATTTGAAAAATTACCAAAATACCCTT
14668333 GATTT-AGAAAATTATAG
65 GATTTGA-AAAATTAT-G
* * * * * **
14668350 AAATACCCCTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCAAAAATTACAAAAATACTAT
1 AAATACCCCTGATTTATAAAATTACCA-AAATACCCCT-AATTTGAAAAATTACCAAAATACCCT
*
14668414 TGGTTTGAAAAATTATCG
64 TGATTTGAAAAATTAT-G
* * * *
14668432 AAATACCCTTGATTTGTAAATTTACCAAAACACCC
1 AAATACCCCTGATTTATAAAATTACCAAAATACCC
14668467 TTGTAAGGTG
Statistics
Matches: 164, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
78 4 0.02
79 5 0.03
80 40 0.24
81 47 0.29
82 65 0.40
83 3 0.02
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (80 bp):
AAATACCCCTGATTTATAAAATTACCAAAATACCCCTAATTTGAAAAATTACCAAAATACCCTTG
ATTTGAAAAATTATG
Found at i:14668467 original size:82 final size:82
Alignment explanation
Indices: 14668153--14668469 Score: 240
Period size: 82 Copynumber: 3.9 Consensus size: 82
14668143 TTTGGTTTAC
* ** * * *
14668153 AAAATTACTAAAATACC-TTCGA-TTAGCAAAATTGCCAAAATACCCCTG-TTTGTAAAATTACC
1 AAAATTACAAAAATACCATT-GATTTAG-AAAATTATCGAAATACCCTTGATTTATAAAATTACC
* **
14668215 AAAATACCCCT-AATTTGT
64 AAAATACCCTTGAATTTCA
* * * * ** *
14668233 AAAATTAC-TAAATACCCTTAACTT-GTAAAATTA-CTGAAATACCCTCAATTTTTAAAATTACC
1 AAAATTACAAAAATACCATTGATTTAG-AAAATTATC-GAAATACCCTTGATTTATAAAATTACC
* **
14668295 AAAATACCCCT-AATTTGG
64 AAAATACCCTTGAATTTCA
* * * * *
14668313 AAAATTACCAAAATACCCTTGATTTAGAAAATTATAGAAATACCCCTGATTTACAAAATTA-CAG
1 AAAATTACAAAAATACCATTGATTTAGAAAATTATCGAAATACCCTTGATTTATAAAATTACCA-
*
14668377 AAATACCCTTGACTTTCA
65 AAATACCCTTGAATTTCA
* * * *
14668395 AAAATTACAAAAATACTATTGGTTT-GAAAAATTATCGAAATACCCTTGATTTGTAAATTTACCA
1 AAAATTACAAAAATACCATTGATTTAG-AAAATTATCGAAATACCCTTGATTTATAAAATTACCA
*
14668459 AAACACCCTTG
65 AAATACCCTTG
14668470 TAAGGTGAAA
Statistics
Matches: 193, Mismatches: 33, Indels: 20
0.78 0.13 0.08
Matches are distributed among these distances:
78 1 0.01
79 23 0.12
80 52 0.27
81 50 0.26
82 65 0.34
83 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (82 bp):
AAAATTACAAAAATACCATTGATTTAGAAAATTATCGAAATACCCTTGATTTATAAAATTACCAA
AATACCCTTGAATTTCA
Found at i:14668752 original size:41 final size:41
Alignment explanation
Indices: 14668707--14668829 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
14668697 GGAGGAAGAA
14668707 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
14668748 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * * *
14668789 ATTAAGGATTGCATGGTTGCTTGATGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
14668830 GTGGCTTTTA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:14671041 original size:8 final size:8
Alignment explanation
Indices: 14671032--14671075 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
14671022 GGCAAATCCT
*
14671032 GAAATGCT
1 GAAATGCC
*
14671040 GAAAAGCC
1 GAAATGCC
*
14671048 AAAATGCC
1 GAAATGCC
*
14671056 GAAAAGCC
1 GAAATGCC
14671064 GAAATGCC
1 GAAATGCC
14671072 GAAA
1 GAAA
14671076 AGCCAAAAGT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.48, C:0.20, G:0.23, T:0.09
Consensus pattern (8 bp):
GAAATGCC
Found at i:14671054 original size:16 final size:16
Alignment explanation
Indices: 14671033--14671083 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
14671023 GCAAATCCTG
*
14671033 AAATGCTGAAAAGCCA
1 AAATGCCGAAAAGCCA
*
14671049 AAATGCCGAAAAGCCG
1 AAATGCCGAAAAGCCA
14671065 AAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCCA
14671081 AAA
1 AAA
14671084 GTTTGTCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.51, C:0.22, G:0.20, T:0.08
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:14671336 original size:29 final size:29
Alignment explanation
Indices: 14671294--14671418 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
14671284 GAAAGCATGT
14671294 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
14671323 ATATGAAAGTGATTTGGGCCTAATGAGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
14671352 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
14671381 ATATGAATGAGA-TTAGGCCTAGTGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
14671409 ATATGCATGT
1 ATATGAATGT
14671419 ATGTAGACTT
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.25
29 63 0.75
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:14672704 original size:26 final size:25
Alignment explanation
Indices: 14672675--14672765 Score: 92
Period size: 27 Copynumber: 3.4 Consensus size: 25
14672665 ATTACCAAAG
* *
14672675 TACCCTCGATTATAGAATTATCGTTT
1 TACCCTCGATTACAAAATTA-CGTTT
* *
14672701 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGA-TTACAAAATTA-CGTTT
*
14672728 TACCCTCAGTTTACAAAATTACTGTTT
1 TACCCTC-GATTACAAAATTAC-GTTT
14672755 TACCCTCGATT
1 TACCCTCGATT
14672766 GTGAAATTAC
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
26 12 0.23
27 40 0.75
28 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.41
Consensus pattern (25 bp):
TACCCTCGATTACAAAATTACGTTT
Found at i:14672787 original size:27 final size:27
Alignment explanation
Indices: 14672764--14672923 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
14672754 TTACCCTCGA
**
14672764 TTGTGAAATTACTGAAATACCCCTA-T
1 TTGTGAAATTACCAAAATACCCCTAGT
** *
14672790 AGGATAGAA-TTACCAAAATACCCTTAGT
1 TTG-T-GAAATTACCAAAATACCCCTAGT
*
14672818 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAGT
* * *
14672845 TTGTAAAATTACCGAAATACCACTAGT
1 TTGTGAAATTACCAAAATACCCCTAGT
*
14672872 TTGTGAAATTA-CATAAATA-CCCTCAAT
1 TTGTGAAATTACCA-AAATACCCCT-AGT
* *
14672899 TTGTAAAATTATCAAAATACCCCTA
1 TTGTGAAATTACCAAAATACCCCTA
14672924 ATTTACAAAA
Statistics
Matches: 110, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
26 7 0.06
27 92 0.84
28 11 0.10
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
TTGTGAAATTACCAAAATACCCCTAGT
Found at i:14672890 original size:81 final size:81
Alignment explanation
Indices: 14672797--14672946 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
14672787 TATAGGATAG
* * * ** *
14672797 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
14672862 TACCACTAGTTTGTGA
66 TACCACTAGTTTGTGA
*
14672878 AATTA-CATAAATACCCTCAATTTGTAAAATTATCAAAATACCCCTAATTTACAAAATTACAGAA
1 AATTACCA-AAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAA
14672942 ATACC
65 ATACC
14672947 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 59 0.97
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
TACCACTAGTTTGTGA
Found at i:14672926 original size:27 final size:27
Alignment explanation
Indices: 14672797--14672947 Score: 173
Period size: 27 Copynumber: 5.6 Consensus size: 27
14672787 TATAGGATAG
*
14672797 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
14672824 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
14672851 AATTACCGAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
14672878 AATTA-CATAAATA-CCCTCAATTTGTAA
1 AATTACCA-AAATACCCCT-AGTTTGTAA
* * **
14672905 AATTATCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
14672932 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
14672948 TTGACTTTCT
Statistics
Matches: 109, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.06
27 97 0.89
28 6 0.06
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:14672998 original size:27 final size:28
Alignment explanation
Indices: 14672925--14673002 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
14672915 ATACCCCTAA
* *
14672925 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCATTGAC
*
14672953 TTT-CTAAAAATTA-TAGAAATACCATTG-G
1 TTTAC--AAAATTACT-GAAATACCATTGAC
14672981 TTTACAAAATTACTGAAATACC
1 TTTACAAAATTACTGAAATACC
14673003 CTTAGGTTGT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
27 16 0.38
28 7 0.17
29 19 0.45
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.32
Consensus pattern (28 bp):
TTTACAAAATTACTGAAATACCATTGAC
Found at i:14673094 original size:27 final size:27
Alignment explanation
Indices: 14673051--14673124 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
14673041 AAATGACTAA
*
14673051 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
14673078 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
14673105 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
14673125 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:14673128 original size:27 final size:27
Alignment explanation
Indices: 14673064--14673128 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
14673054 ACCCCTAATA
*
14673064 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
14673091 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
14673118 GGTAAAATGAC
1 GGTAAAATGAC
14673129 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:14673977 original size:25 final size:24
Alignment explanation
Indices: 14673937--14674006 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
14673927 AGGAAGTGCT
* * *
14673937 AAAAGGGCTCTACCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTCACC
*
14673961 GAAAAGGGCTTTGCCCCAGTTCATC
1 -AAAAGGGCTTTGCCCCAGTTCACC
14673986 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
14674007 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTCACC
Found at i:14674213 original size:42 final size:42
Alignment explanation
Indices: 14674154--14674245 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
14674144 TAGTCTCCCC
* *
14674154 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTAAATGTGATATTG
14674196 AAATGGGCTTGCATACATCCATTGACATTAAATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTAAATGTGATATTG
14674238 AAATGGGC
1 AAATGGGC
14674246 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTAAATGTGATATTG
Found at i:14674340 original size:76 final size:76
Alignment explanation
Indices: 14674214--14674366 Score: 306
Period size: 76 Copynumber: 2.0 Consensus size: 76
14674204 TTGCATACAT
14674214 CCATTGACATTAAATGTGATATTGAAATGGGCCTAAGGGCCATACCGTTTACAGTAAAGGCTTCG
1 CCATTGACATTAAATGTGATATTGAAATGGGCCTAAGGGCCATACCGTTTACAGTAAAGGCTTCG
14674279 GCCCAATGATA
66 GCCCAATGATA
14674290 CCATTGACATTAAATGTGATATTGAAATGGGCCTAAGGGCCATACCGTTTACAGTAAAGGCTTCG
1 CCATTGACATTAAATGTGATATTGAAATGGGCCTAAGGGCCATACCGTTTACAGTAAAGGCTTCG
14674355 GCCCAATGATA
66 GCCCAATGATA
14674366 C
1 C
14674367 GATTTATAAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (76 bp):
CCATTGACATTAAATGTGATATTGAAATGGGCCTAAGGGCCATACCGTTTACAGTAAAGGCTTCG
GCCCAATGATA
Found at i:14674380 original size:31 final size:31
Alignment explanation
Indices: 14674345--14674451 Score: 153
Period size: 31 Copynumber: 3.5 Consensus size: 31
14674335 CGTTTACAGT
* * *
14674345 AAAGGCTTCGGCCCAATGATACGATTTATAA
1 AAAGGCTTCGGCCCAGTGATAAGATTTATGA
*
14674376 AAAGGCTTCAGCCCAGTGATAAGATTTATGA
1 AAAGGCTTCGGCCCAGTGATAAGATTTATGA
*
14674407 AAAGGCTTCGGCCCAGTGATATA-ATTTATGG
1 AAAGGCTTCGGCCCAGTGATA-AGATTTATGA
14674438 AAAGGCTTCGGCCC
1 AAAGGCTTCGGCCC
14674452 GGTATATGTC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
31 68 0.99
32 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATAAGATTTATGA
Found at i:14678928 original size:19 final size:18
Alignment explanation
Indices: 14678891--14678934 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
14678881 ATACATACAG
14678891 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
14678908 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
14678927 TACTAATT
1 TAATAATT
14678935 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:14679958 original size:17 final size:18
Alignment explanation
Indices: 14679925--14679958 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14679915 TATAAGGAAG
14679925 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
14679943 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
14679959 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:14681752 original size:17 final size:17
Alignment explanation
Indices: 14681727--14681761 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14681717 GAGTTGTAAC
*
14681727 ACCCCAAAAATCCCGAA
1 ACCCAAAAAATCCCGAA
14681744 ACCCAAAAAATCCCGAA
1 ACCCAAAAAATCCCGAA
14681761 A
1 A
14681762 TCTCAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.37, G:0.06, T:0.06
Consensus pattern (17 bp):
ACCCAAAAAATCCCGAA
Found at i:14683022 original size:16 final size:16
Alignment explanation
Indices: 14682999--14683051 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
14682989 CGGTAAATCT
14682999 CGAAATGCCAAAAA-A
1 CGAAATGCCAAAAAGA
*
14683014 CGAAAATGCCAAAAAGT
1 CG-AAATGCCAAAAAGA
*
14683031 CGAAATGCCAAAAAGC
1 CGAAATGCCAAAAAGA
14683047 CGAAA
1 CGAAA
14683052 GTTTGGCTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 2 0.06
16 30 0.88
17 2 0.06
ACGTcount: A:0.55, C:0.21, G:0.17, T:0.08
Consensus pattern (16 bp):
CGAAATGCCAAAAAGA
Found at i:14683316 original size:28 final size:29
Alignment explanation
Indices: 14683265--14683320 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
14683255 AGCATGTATA
*
14683265 TGAATGTGATTTGGGCCTAATGGGCCATG
1 TGAATGAGATTTGGGCCTAATGGGCCATG
*
14683294 TGAATGAGA-TTGGGCCTAGTGGGCCAT
1 TGAATGAGATTTGGGCCTAATGGGCCAT
14683321 ATGCATGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (29 bp):
TGAATGAGATTTGGGCCTAATGGGCCATG
Found at i:14692123 original size:93 final size:93
Alignment explanation
Indices: 14692010--14692181 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
14692000 GCCCATAAGT
*
14692010 GAACTAGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTAGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
14692074 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
* *
14692103 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14692168 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
14692182 CAAATATCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTAGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:14692172 original size:46 final size:46
Alignment explanation
Indices: 14692002--14692177 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
14691992 TGTAACCTGC
* *
14692002 CCATAAGTGAACTAGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCAT
* *
14692048 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* * *
14692098 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
14692141 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14692178 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 66 0.59
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:14692196 original size:46 final size:45
Alignment explanation
Indices: 14692053--14692196 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
14692043 CGCATCCATA
* * *
14692053 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
14692101 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
14692146 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
14692192 AGTGA
1 AGTGA
14692197 CATGTCACTT
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.48
47 30 0.39
48 5 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:14694607 original size:30 final size:30
Alignment explanation
Indices: 14694563--14694651 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
14694553 CAAAGATAAC
*
14694563 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
14694592 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
14694622 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
14694652 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:14694611 original size:15 final size:14
Alignment explanation
Indices: 14694563--14694645 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
14694553 CAAAGATAAC
*
14694563 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
14694577 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
14694592 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
14694607 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
14694622 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
14694637 AAGAAACCC
1 AAGAAACCC
14694646 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:14694651 original size:15 final size:15
Alignment explanation
Indices: 14694574--14694651 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
14694564 AGAAAACCGA
14694574 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
14694589 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
14694603 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
14694618 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
14694634 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
14694649 ATA
1 ATA
14694652 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:14696737 original size:40 final size:40
Alignment explanation
Indices: 14696636--14696780 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
14696626 TACTCGAATG
* *
14696636 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
14696677 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
14696717 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
14696757 ATATCCGGGTTAAGACCCAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
14696781 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.67
41 27 0.31
42 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:14700962 original size:93 final size:93
Alignment explanation
Indices: 14700803--14700974 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
14700793 GCCCATAAGT
* *
14700803 GAACTAGGACTCAACCCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACCCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14700868 CGAGCTCGGATGCCTACTTACATCTCAC
66 CGAGCTCGGATGCCTACTTACATCTCAC
* * *
14700896 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACCCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14700961 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
14700975 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (93 bp):
GAACTAGGACTCAACCCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTACTTACATCTCAC
Found at i:14700970 original size:46 final size:46
Alignment explanation
Indices: 14700795--14700970 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
14700785 TGTAACCTGC
* * * *
14700795 CCATAAGTGAACTAGGACTCAACCCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
14700841 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTACTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CT-C--GCAT
* * *
14700891 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
14700934 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14700971 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 66 0.60
47 30 0.27
48 3 0.03
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:14707009 original size:33 final size:34
Alignment explanation
Indices: 14706972--14707038 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
14706962 GTTTCAATTA
*
14706972 GGATTTAGCCTGGACCGATAATCCTAA-TTGACT
1 GGATTTAGCCTGGACCGATAATCCAAATTTGACT
* *
14707005 GGATTTAGCCTGGACTGGTAATCCAAATTTGACT
1 GGATTTAGCCTGGACCGATAATCCAAATTTGACT
14707039 CTATAGCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (34 bp):
GGATTTAGCCTGGACCGATAATCCAAATTTGACT
Found at i:14711458 original size:68 final size:64
Alignment explanation
Indices: 14711266--14711473 Score: 192
Period size: 67 Copynumber: 3.2 Consensus size: 64
14711256 TCTTTTACAT
* * * *
14711266 ATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTAGCTCTCTTGTTTAC
1 ATGGTGTACACATAGTATCA-CCATGAGACCTAGCTACCTCTATTCTCGTAGCTCTCTTGTCTAC
* * * * *
14711329 ATGGTGTCCTTCACCTAGAACCACACATGCA-ACCTAGCTACATCTA-TCTCGTAGCTCTCTTGT
1 ATGGTG---TACACATAGTATCAC-CATG-AGACCTAGCTACCTCTATTCTCGTAGCTCTCTTGT
14711392 CTAC
61 CTAC
14711396 ATGGTGTACACATAGTATCATCCATGAGACCTAGCTACCTCATAATGTCTCGTAGCTCTCTTGTA
1 ATGGTGTACACATAGTATCA-CCATGAGACCTAGCTACCTC-T-AT-TCTCGTAGCTCTCTTGT-
14711461 C-AC
61 CTAC
*
14711464 ATGGTATACA
1 ATGGTGTACA
14711474 TCCCGTATTA
Statistics
Matches: 117, Mismatches: 15, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
63 7 0.06
64 26 0.22
65 3 0.03
66 23 0.20
67 29 0.25
68 28 0.24
69 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (64 bp):
ATGGTGTACACATAGTATCACCATGAGACCTAGCTACCTCTATTCTCGTAGCTCTCTTGTCTAC
Found at i:14712012 original size:29 final size:29
Alignment explanation
Indices: 14711965--14712023 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
14711955 GTCCTTAACT
*
14711965 CAAACTTTGGCAAAATTACAATTTTTCCC
1 CAAACTTTGGCAAAATTACAATTTTGCCC
* * * *
14711994 CAAACTTTTGCATATTTACACTTTTGCCC
1 CAAACTTTGGCAAAATTACAATTTTGCCC
14712023 C
1 C
14712024 TAGGCTCGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (29 bp):
CAAACTTTGGCAAAATTACAATTTTGCCC
Found at i:14715740 original size:25 final size:25
Alignment explanation
Indices: 14715691--14715783 Score: 98
Period size: 26 Copynumber: 3.7 Consensus size: 25
14715681 GAAGTGCAAT
* *
14715691 AGGGCTATGCCCCAG-TTACAGAAA
1 AGGGCTTTGCCCCAGTTTACCGAAA
*
14715715 AGGGCTTTGCCCTAGTTTACCGAAA
1 AGGGCTTTGCCCCAGTTTACCGAAA
* * *
14715740 AGGGCTTTCACCCCAGTTTATCAAAA
1 AGGGCTTT-GCCCCAGTTTACCGAAA
*
14715766 AAGGCTTTTGCCCCAGTT
1 AGGGC-TTTGCCCCAGTT
14715784 ATTAAAAGAG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
24 13 0.23
25 16 0.28
26 25 0.44
27 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (25 bp):
AGGGCTTTGCCCCAGTTTACCGAAA
Found at i:14715785 original size:25 final size:26
Alignment explanation
Indices: 14715698--14715796 Score: 80
Period size: 26 Copynumber: 3.9 Consensus size: 26
14715688 AATAGGGCTA
*
14715698 TGCCCCAG-TTA-CAGAAAAGGGC-TT
1 TGCCCCAGTTTATCA-AAAAAGGCTTT
* * * *
14715722 TGCCCTAGTTTACCGAAAAGGGCTTT
1 TGCCCCAGTTTATCAAAAAAGGCTTT
**
14715748 CACCCCAGTTTATCAAAAAAGGCTTT
1 TGCCCCAGTTTATCAAAAAAGGCTTT
* *
14715774 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAAAGGCT
14715797 AGGCCTCCAG
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
24 7 0.12
25 24 0.40
26 29 0.48
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (26 bp):
TGCCCCAGTTTATCAAAAAAGGCTTT
Found at i:14716042 original size:31 final size:31
Alignment explanation
Indices: 14716004--14716105 Score: 177
Period size: 31 Copynumber: 3.3 Consensus size: 31
14715994 GTTTACAGTA
14716004 AAAGGCTTCAGCCCAGTGACATGAATAATGC
1 AAAGGCTTCAGCCCAGTGACATGAATAATGC
* *
14716035 AAAGGCTTCGGCCCAGTGACATGAACAATGC
1 AAAGGCTTCAGCCCAGTGACATGAATAATGC
*
14716066 AAAGGCTTCAGCCCAGTAACATGAATAATGC
1 AAAGGCTTCAGCCCAGTGACATGAATAATGC
14716097 AAAGGCTTC
1 AAAGGCTTC
14716106 GGCGCAGTAT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 66 1.00
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.19
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGACATGAATAATGC
Found at i:14718107 original size:12 final size:12
Alignment explanation
Indices: 14718090--14718114 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14718080 TATGTATGTT
14718090 TGAAAATTTTTA
1 TGAAAATTTTTA
14718102 TGAAAATTTTTA
1 TGAAAATTTTTA
14718114 T
1 T
14718115 TATTTGCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:14720184 original size:25 final size:25
Alignment explanation
Indices: 14720155--14720202 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14720145 TTATAATATG
** *
14720155 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
14720180 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
14720203 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:14720307 original size:20 final size:20
Alignment explanation
Indices: 14720284--14720325 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14720274 TATATGATTT
*
14720284 ATATATACGATATGCACATG
1 ATATATACGATAAGCACATG
* *
14720304 ATATGTATGATAAGCACATG
1 ATATATACGATAAGCACATG
14720324 AT
1 AT
14720326 GTATTCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (20 bp):
ATATATACGATAAGCACATG
Found at i:14720329 original size:18 final size:19
Alignment explanation
Indices: 14720292--14720329 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
14720282 TTATATATAC
*
14720292 GATATGCACATGATATGTAT
1 GATAAGCACATGA-ATGTAT
14720312 GATAAGCACATG-ATGTAT
1 GATAAGCACATGAATGTAT
14720330 TCATTTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (19 bp):
GATAAGCACATGAATGTAT
Found at i:14720440 original size:26 final size:25
Alignment explanation
Indices: 14720372--14720466 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
14720362 GAGGAAGTGC
*
14720372 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
14720396 GAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * * *
14720421 AAAAGGGATTTTGTCCCAGTTTATCA
1 AAAAGGG-CTTTGCCCCAGTTTACCG
*
14720447 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
14720467 ATTAAAAGAG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
24 16 0.27
25 22 0.37
26 21 0.36
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:14722056 original size:40 final size:40
Alignment explanation
Indices: 14722019--14722203 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
14722009 GCTACTCGTT
*
14722019 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
14722059 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
14722099 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAGCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
14722138 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14722179 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14722204 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14722139 original size:79 final size:81
Alignment explanation
Indices: 14722021--14722203 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
14722011 TACTCGTTCA
* *
14722021 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
14722084 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* * **
14722101 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAGCTTGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
14722164 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
14722180 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
14722204 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:14723826 original size:30 final size:31
Alignment explanation
Indices: 14723745--14723827 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
14723735 TCAGTCTCGA
14723745 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
14723775 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
14723806 CATATCACT-GGCCAAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
14723828 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 17 0.33
31 34 0.67
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:14724099 original size:25 final size:25
Alignment explanation
Indices: 14724047--14724116 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
14724037 ATCTTTTAAT
* *
14724047 AACT-GGGCCAAAGCCCTTTTTGATA
1 AACTAGGG-CAAAGCCCTTTTCGACA
*
14724072 AACTAGGGCAAAGCCCTTTTCGGCA
1 AACTAGGGCAAAGCCCTTTTCGACA
*
14724097 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
14724117 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 37 0.93
26 3 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGACA
Found at i:14724971 original size:27 final size:27
Alignment explanation
Indices: 14724931--14725003 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
14724921 TATTCGTCAT
* *
14724931 TTTACCATACAGGGGTATTACGGCCAC
1 TTTACCCTATAGGGGTATTACGGCCAC
* **
14724958 TTTACCCTATAGGGGCT-TTACGGTCTT
1 TTTACCCTATAGGGG-TATTACGGCCAC
14724985 TTTA-CCTATTAGGGGTATT
1 TTTACCCTA-TAGGGGTATT
14725004 TTACTCATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 5 0.13
27 32 0.84
28 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTACGGCCAC
Found at i:14725074 original size:27 final size:27
Alignment explanation
Indices: 14725044--14725141 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
14725034 GTAAATCTAC
14725044 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
14725071 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
*
14725097 AGAAAGCCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* *
14725127 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
14725142 TGATAATTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 12
0.78 0.06 0.16
Matches are distributed among these distances:
26 1 0.02
27 32 0.53
28 7 0.12
29 19 0.32
30 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:14725148 original size:27 final size:27
Alignment explanation
Indices: 14725107--14725230 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
14725097 AGAAAGCCAA
**
14725107 GGGTATTTCTG-TAATTTTGTAAA-TCAG
1 GGGTATTT-TGATAATTTTACAAACT-AG
*
14725134 GGGTATTTTGATAATTTTACAAA-TTG
1 GGGTATTTTGATAATTTTACAAACTAG
* *
14725160 AGGGTATTTCGATAATTTCACAAACTAG
1 -GGGTATTTTGATAATTTTACAAACTAG
* *
14725188 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTACAAACTAG
*
14725215 GGGTATTTTGGTAATT
1 GGGTATTTTGATAATT
14725231 CTACCCTATA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.04
27 78 0.94
28 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACAAACTAG
Found at i:14725282 original size:26 final size:26
Alignment explanation
Indices: 14725253--14725336 Score: 100
Period size: 26 Copynumber: 3.2 Consensus size: 26
14725243 GGTATTTCAA
14725253 TAATTTCACAATCGAGGGTAAAACTG
1 TAATTTCACAATCGAGGGTAAAACTG
14725279 TAATTTCACAATCGAGGGTAAAA-TAG
1 TAATTTCACAATCGAGGGTAAAACT-G
* * *
14725305 TAATTCTGTA-AATCAAGGGTAAAACAG
1 TAATT-T-CACAATCGAGGGTAAAACTG
14725332 TAATT
1 TAATT
14725337 CTATAAATCG
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 29 0.57
27 20 0.39
28 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.29
Consensus pattern (26 bp):
TAATTTCACAATCGAGGGTAAAACTG
Found at i:14725326 original size:27 final size:27
Alignment explanation
Indices: 14725262--14725352 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
14725252 ATAATTTCAC
* *
14725262 AATCGAGGGTAAAACTGTAATT-TCA-C
1 AATCGAGGGTAAAACAGTAATTCT-ATA
* *
14725288 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
14725315 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
14725342 AATCGAGGGTA
1 AATCGAGGGTA
14725353 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 20 0.36
27 35 0.64
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:14725961 original size:54 final size:54
Alignment explanation
Indices: 14725879--14725989 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
14725869 TGTTGTCGCC
14725879 CCCTGTTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCCATGCCT
1 CCCTGTTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCCATGCCT
14725933 CCCTGTTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCCATGCCT
1 CCCTGTTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCCATGCCT
14725987 CCC
1 CCC
14725990 CTCAGATGCT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (54 bp):
CCCTGTTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCCATGCCT
Found at i:14726683 original size:31 final size:31
Alignment explanation
Indices: 14726648--14726727 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
14726638 CGTTTACAGT
*
14726648 AAAAGGCTTCGGCCCAGTGAGATGAATAATG
1 AAAAGGCTTCGGCCCAGTGACATGAATAATG
*
14726679 AAAAGGCTTCAGCCCAGTGACATGAATAATG
1 AAAAGGCTTCGGCCCAGTGACATGAATAATG
*
14726710 CAAAGGCTTCGGCCCAGT
1 AAAAGGCTTCGGCCCAGT
14726728 ATATGTTGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTGACATGAATAATG
Found at i:14728365 original size:64 final size:64
Alignment explanation
Indices: 14728240--14728423 Score: 244
Period size: 64 Copynumber: 2.8 Consensus size: 64
14728230 TAATACGGGA
* * * *
14728240 TGTATACCATGT-GTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCGTGGGTGATAC
1 TGTACACCATGTAG-ACAAGAGAGCTACG-G-GA-TAT-ATGTAGCTAGGTCGCATGGGTGATAC
14728304 TATG
61 TATG
14728308 TGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATG
1 TGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATG
* * * *
14728372 TGTACACCATGTAGACAAGACAGCTACGAGATAAATGTAGCTAGGTTGCATG
1 TGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATG
14728424 TGTAGTTCCA
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
64 76 0.71
65 3 0.03
66 1 0.01
67 1 0.01
68 25 0.23
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
TGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATG
Found at i:14728464 original size:67 final size:64
Alignment explanation
Indices: 14728245--14728473 Score: 219
Period size: 64 Copynumber: 3.5 Consensus size: 64
14728235 CGGGATGTAT
* * * * *
14728245 ACCATGT-GTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCGTGGGTGATACTATGT
1 ACCATGTAG-ACAAGAGAGCTACGAG--A-TA-AATGTAGCTAGGTCGCATGGGTGATACCATGA
*
14728309 GTAC
61 GGAC
* * * * *
14728313 ACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTAC
1 ACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGATACCATGAGGAC
* * * *
14728377 ACCATGTAGACAAGACAGCTACGAGATAAATGTAGCTAGGTTGCATGTGT-AGTTCCAGGTGAAG
1 ACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGA-TACCA--TG-AG
14728441 GAC
62 GAC
*
14728444 ACCATGTAAACAAGAGAGCTACGAGATAAA
1 ACCATGTAGACAAGAGAGCTACGAGATAAA
14728474 GTGGCTAAGT
Statistics
Matches: 141, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
63 1 0.01
64 81 0.57
65 2 0.01
66 3 0.02
67 31 0.22
68 22 0.16
69 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (64 bp):
ACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGATACCATGAGGAC
Found at i:14735961 original size:33 final size:33
Alignment explanation
Indices: 14735924--14736013 Score: 135
Period size: 33 Copynumber: 2.7 Consensus size: 33
14735914 GTTTCAATTA
*
14735924 GGATTTAGCCTGGACTGGTAATCCTAATTGACT
1 GGATTTAGCCTGGACTGGTAATCCTAATCGACT
* *
14735957 GGATTTAGCCTGGACTGGAAATCCTAATCGATT
1 GGATTTAGCCTGGACTGGTAATCCTAATCGACT
* *
14735990 GAATTTAGCCTGGACTAGTAATCC
1 GGATTTAGCCTGGACTGGTAATCC
14736014 AGATTTGACT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (33 bp):
GGATTTAGCCTGGACTGGTAATCCTAATCGACT
Found at i:14748062 original size:29 final size:28
Alignment explanation
Indices: 14748026--14748103 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
14748016 TCATGAGATT
14748026 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
14748056 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
14748083 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
14748104 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:14748323 original size:145 final size:145
Alignment explanation
Indices: 14748081--14748386 Score: 567
Period size: 145 Copynumber: 2.1 Consensus size: 145
14748071 GTTTAAAGTA
* *
14748081 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAATCCAATATATATTTTTT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
14748146 ATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGATTTTGGACAGCCGAAAAGGTAAGTG
66 ATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGATTTTGGACAGCCGAAAAGGTAAGTG
14748211 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
*
14748226 CATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* *
14748291 ATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGATTTTGGACAGCCGAAAAGGTAAGTG
14748356 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
14748371 CATGGCACTAAGTGTG
1 CATGGCACTAAGTGTG
14748387 TGAGTTTAAA
Statistics
Matches: 156, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 156 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGATTTTGGACAGCCGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:14748416 original size:174 final size:174
Alignment explanation
Indices: 14748224--14748560 Score: 647
Period size: 174 Copynumber: 1.9 Consensus size: 174
14748214 GAACTTGAAA
*
14748224 TGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATGTGTGCGAACCCAATATATATTTT
1 TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
14748289 CTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAG
66 CTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAG
*
14748354 TGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAG
131 GGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAG
14748398 TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
1 TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
*
14748463 CTATAAATTATTTACATTAAGGGTGTGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAG
66 CTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAG
14748528 GGTGCGAACTTGAAATGCATGGCACTAAGTGTG
131 GGTGCGAACTTGAAATGCATGGCACTAAGTGTG
14748561 CGCGGTTGAT
Statistics
Matches: 160, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 160 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (174 bp):
TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
CTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAG
GGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAG
Found at i:14748610 original size:319 final size:319
Alignment explanation
Indices: 14748056--14748673 Score: 1128
Period size: 319 Copynumber: 1.9 Consensus size: 319
14748046 AAATTGTACA
14748056 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
14748121 TGTGCGAATCCAATATATATTTTTTATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGA
*
14748186 TTTTGGACAGCCGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGCGCGGTTGA
131 TTTTGGACAGCCGAAAAGGTAAGGGTGCGAACTTGAAATGCATGGCACTAAGTGTGCGCGGTTGA
* *
14748251 TTATTGAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCG
196 TTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCG
*
14748316 ACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
261 ACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
14748375 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
14748440 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGTGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGA
*
14748505 TTTTGGACAGCGGAAAAGGTAAGGGTGCGAACTTGAAATGCATGGCACTAAGTGTGCGCGGTTGA
131 TTTTGGACAGCCGAAAAGGTAAGGGTGCGAACTTGAAATGCATGGCACTAAGTGTGCGCGGTTGA
*
14748570 TTATTAAGCACTATGTGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCG
196 TTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCG
14748635 ACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
261 ACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
14748674 ACCTTGAGTT
Statistics
Matches: 287, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
319 287 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (319 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGA
TTTTGGACAGCCGAAAAGGTAAGGGTGCGAACTTGAAATGCATGGCACTAAGTGTGCGCGGTTGA
TTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCG
ACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:14748661 original size:145 final size:145
Alignment explanation
Indices: 14748398--14748672 Score: 514
Period size: 145 Copynumber: 1.9 Consensus size: 145
14748388 GAGTTTAAAG
14748398 TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
1 TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
* * *
14748463 CTATAAATTATTTACATTAAGGGTGTGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAG
66 CTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAG
14748528 GGTGCGAACTTGAAA
131 GGTGCGAACTTGAAA
*
14748543 TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACTCAATATATATTTT
1 TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
14748608 CTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAG
66 CTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAG
14748673 TACCTTGAGT
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 126 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
TGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTT
CTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAG
GGTGCGAACTTGAAA
Found at i:14752157 original size:9 final size:9
Alignment explanation
Indices: 14752143--14752169 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
14752133 GGCACCAACC
14752143 GAGTTAAAA
1 GAGTTAAAA
14752152 GAGTTAAAA
1 GAGTTAAAA
14752161 GAGTTAAAA
1 GAGTTAAAA
14752170 TCTCAGTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (9 bp):
GAGTTAAAA
Found at i:14754574 original size:1 final size:1
Alignment explanation
Indices: 14754568--14755648 Score: 2153
Period size: 1 Copynumber: 1081.0 Consensus size: 1
14754558 CCGTGAATTG
14754568 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14754633 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14754698 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14754763 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14754828 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14754893 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14754958 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755023 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755088 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755153 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755218 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755283 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755348 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755413 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755478 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755543 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
14755608 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14755649 GGGCTAGTTG
Statistics
Matches: 1078, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 1078 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14756946 original size:40 final size:40
Alignment explanation
Indices: 14756889--14757188 Score: 236
Period size: 40 Copynumber: 7.5 Consensus size: 40
14756879 TAATTATTGA
* *
14756889 TGATTGCACATACGTGCCCCTATTTTTACTTCGGTACCCT
1 TGATTGCACATACGTGCCCTTATTTGTACTTCGGTACCCT
* * *
14756929 TGATTGCACATATGTGCCCTTGTTTGTACTTCAGTA-CCT
1 TGATTGCACATACGTGCCCTTATTTGTACTTCGGTACCCT
* ** ** * * *
14756968 CTGGTTGTGCAGGCATGCCCTTATTTATACTAT-GGTATGCC-
1 -TGATTGCACATACGTGCCCTTATTTGTACT-TCGGTA-CCCT
* * *
14757009 TGATTGCACATACGTGCCCCTGTTTGTACGTT-GATACCCT
1 TGATTGCACATACGTGCCCTTATTTGTAC-TTCGGTACCCT
* *
14757049 TGATTGCACATACGTACCCTTATTTGTACTAT-GGTATGCC-
1 TGATTGCACATACGTGCCCTTATTTGTACT-TCGGTA-CCCT
* * * *
14757089 TAATTGCACATATGTGCCCTTGTTTGTACGTCGGTACCCT
1 TGATTGCACATACGTGCCCTTATTTGTACTTCGGTACCCT
* * * *
14757129 TGATTGCACATACATGCCCCTATTTGTACTTCGATCCCCT
1 TGATTGCACATACGTGCCCTTATTTGTACTTCGGTACCCT
* **
14757169 T-AATGCAGTTACGTGCCCTT
1 TGATTGCACATACGTGCCCTT
14757189 GTTTAGACTC
Statistics
Matches: 200, Mismatches: 50, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
39 23 0.12
40 171 0.86
41 4 0.02
42 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCTTATTTGTACTTCGGTACCCT
Found at i:14757026 original size:80 final size:80
Alignment explanation
Indices: 14756929--14757158 Score: 266
Period size: 80 Copynumber: 2.9 Consensus size: 80
14756919 TCGGTACCCT
* ** * *
14756929 TGATTGCACATATGTGCCCTTGTTTGTACTTCAGTA-CCTCTGGTTGTGCAGGCATGCCCTTATT
1 TGATTGCACATATGTGCCCTTGTTTGTACTTCAGTACCCT-TGATTGCACAGACATACCCTTATT
14756993 TATACTATGGTATGCC
65 TATACTATGGTATGCC
* * * * *
14757009 TGATTGCACATACGTGCCCCTGTTTGTACGTTGA-TACCCTTGATTGCACATACGTACCCTTATT
1 TGATTGCACATATGTGCCCTTGTTTGTAC-TTCAGTACCCTTGATTGCACAGACATACCCTTATT
*
14757073 TGTACTATGGTATGCC
65 TATACTATGGTATGCC
* * * * * *
14757089 TAATTGCACATATGTGCCCTTGTTTGTACGTCGGTACCCTTGATTGCACATACATGCCCCTATTT
1 TGATTGCACATATGTGCCCTTGTTTGTACTTCAGTACCCTTGATTGCACAGACATACCCTTATTT
*
14757154 GTACT
66 ATACT
14757159 TCGATCCCCT
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 120 0.94
81 6 0.05
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (80 bp):
TGATTGCACATATGTGCCCTTGTTTGTACTTCAGTACCCTTGATTGCACAGACATACCCTTATTT
ATACTATGGTATGCC
Found at i:14757208 original size:80 final size:80
Alignment explanation
Indices: 14756889--14757192 Score: 260
Period size: 80 Copynumber: 3.8 Consensus size: 80
14756879 TAATTATTGA
* * * * *
14756889 TGATTGCACATACGTGCCCCTATTTTTACT-TCGGTA-CCCTTGATTGCACATATGTGCCCTTGT
1 TGATTGCACATACATACCCCTATTTGTACTATC-GTATCCC-TAATTGCACATACGTGCCCTTGT
* *
14756952 TTGTACTTCAGTA-CCT
64 TTGTACGTCGGTACCCT
* ** ** * * * * * * *
14756968 CTGGTTGTGCAGGCATGCCCTTATTTATACTATGGTATGCCTGATTGCACATACGTGCCCCTGTT
1 -TGATTGCACATACATACCCCTATTTGTACTATCGTATCCCTAATTGCACATACGTGCCCTTGTT
* *
14757033 TGTACGTTGATACCCT
65 TGTACGTCGGTACCCT
* * * * *
14757049 TGATTGCACATACGTACCCTTATTTGTACTATGGTATGCCTAATTGCACATATGTGCCCTTGTTT
1 TGATTGCACATACATACCCCTATTTGTACTATCGTATCCCTAATTGCACATACGTGCCCTTGTTT
14757114 GTACGTCGGTACCCT
66 GTACGTCGGTACCCT
* **
14757129 TGATTGCACATACATGCCCCTATTTGTACT-TCG-ATCCCCTTAA-TGCAGTTACGTGCCCTTGT
1 TGATTGCACATACATACCCCTATTTGTACTATCGTAT-CCC-TAATTGCACATACGTGCCCTTGT
14757191 TT
64 TT
14757193 AGACTCTGGT
Statistics
Matches: 182, Mismatches: 37, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
78 2 0.01
79 22 0.12
80 152 0.84
81 6 0.03
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (80 bp):
TGATTGCACATACATACCCCTATTTGTACTATCGTATCCCTAATTGCACATACGTGCCCTTGTTT
GTACGTCGGTACCCT
Found at i:14760511 original size:20 final size:20
Alignment explanation
Indices: 14760488--14760530 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
14760478 TAAATGTTAC
14760488 ATTGAATTATGAAATATGAT
1 ATTGAATTATGAAATATGAT
* *
14760508 ATTGAGTTATGAAATGTGAT
1 ATTGAATTATGAAATATGAT
14760528 ATT
1 ATT
14760531 ATGGATTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.42
Consensus pattern (20 bp):
ATTGAATTATGAAATATGAT
Found at i:14760825 original size:35 final size:34
Alignment explanation
Indices: 14760577--14760825 Score: 104
Period size: 35 Copynumber: 7.2 Consensus size: 34
14760567 TCTGAATAGC
* *
14760577 GCTGGGCGTAAAAAATTTTCGATTATTCGACTAGT
1 GCTGGGCG-AAAACATTATCGATTATTCGACTAGT
* * *
14760612 GCTAGG-G-ACACTATTCATCGATT-TATCTGACTAGC
1 GCTGGGCGAAAAC-ATT-ATCGATTAT-TC-GACTAGT
* * *
14760647 GATGGGCGCAAAACATTATCAATTATTCAACTAGT
1 GCTGGGCG-AAAACATTATCGATTATTCGACTAGT
* * * *
14760682 GC-GGG-GCACACTATTCGTCAGTTTATTCGACTAGT
1 GCTGGGCGAAAAC-ATT-ATC-GATTATTCGACTAGT
* * ** *
14760717 GCTGGGTGCAAAACATTGTTAATTATACGACTAGT
1 GCTGGGCG-AAAACATTATCGATTATTCGACTAGT
* * * *
14760752 GCT--G-G-ACACACTACTCAGTTTA-TCAGACTAGC
1 GCTGGGCGAAAACATTA-TC-GATTATTC-GACTAGT
*
14760784 GTTGGGCGTAAAACATTATCGATTATTCGACTAGT
1 GCTGGGCG-AAAACATTATCGATTATTCGACTAGT
14760819 GCTGGGC
1 GCTGGGC
14760826 ACACTACTCC
Statistics
Matches: 153, Mismatches: 38, Indels: 46
0.65 0.16 0.19
Matches are distributed among these distances:
30 5 0.03
31 2 0.01
32 17 0.11
33 9 0.06
34 15 0.10
35 67 0.44
36 18 0.12
37 14 0.09
38 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (34 bp):
GCTGGGCGAAAACATTATCGATTATTCGACTAGT
Found at i:14760844 original size:137 final size:139
Alignment explanation
Indices: 14760598--14760852 Score: 340
Period size: 137 Copynumber: 1.8 Consensus size: 139
14760588 AAAATTTTCG
* * * *
14760598 ATTATTCGACTAGTGCTAGGGACACTATTCATCGATTTATCTGACTAGCGATGGGCGCAAAACAT
1 ATTATACGACTAGTGCTAGGCACACTACTCA-CGATTTATCAGACTAGCGATGGGCGCAAAACAT
* *
14760663 TATCAATTATTCAACTAGTGCGGGGCACACTATTCGTCAGTTTAT-TCGACTAGTGCTGGGTGCA
65 TATCAATTATTCAACTAGTGCGGGGCACACTACTCCTCAGTTTATCT-GACTAGTGCTGGGTGCA
14760727 AAACATTGTTA
129 AAACATTGTTA
* *
14760738 ATTATACGACTAGTGCT-GGACACACTACTCA-G-TTTATCAGACTAGCGTTGGGCGTAAAACAT
1 ATTATACGACTAGTGCTAGG-CACACTACTCACGATTTATCAGACTAGCGATGGGCGCAAAACAT
* * *
14760800 TATCGATTATTCGACTAGTGCTGGGCACACTACTCCTC-GATTTATCTGACTAG
65 TATCAATTATTCAACTAGTGCGGGGCACACTACTCCTCAG-TTTATCTGACTAG
14760853 CACCTAGCGC
Statistics
Matches: 101, Mismatches: 11, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
136 1 0.01
137 71 0.70
138 2 0.02
139 2 0.02
140 25 0.25
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (139 bp):
ATTATACGACTAGTGCTAGGCACACTACTCACGATTTATCAGACTAGCGATGGGCGCAAAACATT
ATCAATTATTCAACTAGTGCGGGGCACACTACTCCTCAGTTTATCTGACTAGTGCTGGGTGCAAA
ACATTGTTA
Found at i:14760885 original size:137 final size:139
Alignment explanation
Indices: 14760586--14760886 Score: 326
Period size: 137 Copynumber: 2.2 Consensus size: 139
14760576 CGCTGGGCGT
* * * * *
14760586 AAAAAATTTTCGATTATTCGACTAGTGCTAGGGACACTATTCATCGATTTATCTGACTAGCGATG
1 AAAACATTATCGATTATTCGACTAGTGCTAGGCACACTACTCA-CGATTTATCAGACTAGCGATG
* *
14760651 GGCGCAAAACATTATCAATTATTCAACTAGTGCGGGGCACACTATTCGTCAGTTTATTCGACTAG
65 GGCGCAAAACATTATCAATTATTCAACTAGTGCGGGGCACACTACTCCTCAGTTTATTCGACTAG
** * *
14760716 TGCTGGGTGC
130 ACCTGAGCGC
* ** * *
14760726 AAAACATTGTTAATTATACGACTAGTGCT-GGACACACTACTCA-G-TTTATCAGACTAGCGTTG
1 AAAACATTATCGATTATTCGACTAGTGCTAGG-CACACTACTCACGATTTATCAGACTAGCGATG
* * * *
14760788 GGCGTAAAACATTATCGATTATTCGACTAGTGCTGGGCACACTACTCCTC-GATTTA-TCTGACT
65 GGCGCAAAACATTATCAATTATTCAACTAGTGCGGGGCACACTACTCCTCAG-TTTATTC-GACT
14760851 AGCACCT-AGCGC
128 AG-ACCTGAGCGC
*
14760863 AAAACATTATCGACTATTCGACTA
1 AAAACATTATCGATTATTCGACTA
14760887 ATATGGGGAA
Statistics
Matches: 133, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
136 3 0.02
137 92 0.69
138 3 0.02
139 2 0.02
140 33 0.25
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (139 bp):
AAAACATTATCGATTATTCGACTAGTGCTAGGCACACTACTCACGATTTATCAGACTAGCGATGG
GCGCAAAACATTATCAATTATTCAACTAGTGCGGGGCACACTACTCCTCAGTTTATTCGACTAGA
CCTGAGCGC
Found at i:14760934 original size:207 final size:207
Alignment explanation
Indices: 14760564--14760956 Score: 524
Period size: 207 Copynumber: 1.9 Consensus size: 207
14760554 ATATTTTCGG
* * *
14760564 TTATCTGAATAGCGCTGGGCGTAAAAAATTTTCGATTATTCGACTAGTGCTAGGGACACTATTCA
1 TTATCAGAATAGCGCTGGGCGTAAAAAATTATCGATTATTCGACTAGTGCTAGGGACACTACTCA
* * * * *
14760629 TCGATTTATCTGACTAGCGATGGGCGCAAAACATTATCAATTATTCAACTAGTGCGGGGCACACT
66 TCGATTTATCTGACTAGCGATGAGCGCAAAACATTATCAACTATTCAACTAATACGGGGAACACT
* * * *
14760694 ATTCGTCAGTTTATTCGACTAGTGCTGGGTGCAAAACATTGTTAATTATACGACTAGTGCTGGAC
131 ATTCGTCAGTTTATCCGACAAGCGCTGGGTGCAAAACATTGTGAATTATACGACTAGTGCTGGAC
14760759 ACACTACTCAGT
196 ACACTACTCAGT
* * *
14760771 TTATCAGACTAGCGTTGGGCGTAAAACATTATCGATTATTCGACTAGTGCT-GGGCACACTACTC
1 TTATCAGAATAGCGCTGGGCGTAAAAAATTATCGATTATTCGACTAGTGCTAGGG-ACACTACTC
* * * *
14760835 CTCGATTTATCTGACTAGC-ACCT-AGCGCAAAACATTATCGACTATTCGACTAATATGGGGAAC
65 ATCGATTTATCTGACTAGCGA--TGAGCGCAAAACATTATCAACTATTCAACTAATACGGGGAAC
* * *
14760898 ATTATTCGTC-GATTTATCCGACAAGCGCTGGGTGCAAAACATTGTGGATTATTCGACTA
128 ACTATTCGTCAG-TTTATCCGACAAGCGCTGGGTGCAAAACATTGTGAATTATACGACTA
14760957 ATGTTGTACA
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
206 5 0.03
207 154 0.96
208 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (207 bp):
TTATCAGAATAGCGCTGGGCGTAAAAAATTATCGATTATTCGACTAGTGCTAGGGACACTACTCA
TCGATTTATCTGACTAGCGATGAGCGCAAAACATTATCAACTATTCAACTAATACGGGGAACACT
ATTCGTCAGTTTATCCGACAAGCGCTGGGTGCAAAACATTGTGAATTATACGACTAGTGCTGGAC
ACACTACTCAGT
Found at i:14760970 original size:70 final size:70
Alignment explanation
Indices: 14760564--14761000 Score: 343
Period size: 70 Copynumber: 6.3 Consensus size: 70
14760554 ATATTTTCGG
* * * * * *
14760564 TTATCTGAATAGCGCTGGGCGTAAAAAATTTTCGATTATTCGACTAGTGCTAGG-GACACTATTC
1 TTATCCGACTAGCGCTGGGCGCAAAACATTATCGATTATTCGACTAGTGCT-GGACACACTATTC
*
14760628 ATCGAT
65 GTCGAT
* * * * * *
14760634 TTATCTGACTAGCGATGGGCGCAAAACATTATCAATTATTCAACTAGTGCGGGGCACACTATTCG
1 TTATCCGACTAGCGCTGGGCGCAAAACATTATCGATTATTCGACTAGTGCTGGACACACTATTCG
14760699 TC-AGT
66 TCGA-T
* * * * ** *
14760704 TTATTCGACTAGTGCTGGGTGCAAAACATTGTTAATTATACGACTAGTGCTGGACACACTA--C-
1 TTATCCGACTAGCGCTGGGCGCAAAACATTATCGATTATTCGACTAGTGCTGGACACACTATTCG
14760766 TC-AGT
66 TCGA-T
* * * * * *
14760771 TTATCAGACTAGCGTTGGGCGTAAAACATTATCGATTATTCGACTAGTGCTGGGCACACTACTCC
1 TTATCCGACTAGCGCTGGGCGCAAAACATTATCGATTATTCGACTAGTGCTGGACACACTATTCG
14760836 TCGAT
66 TCGAT
* * * * * * *
14760841 TTATCTGACTAGCACCT-AGCGCAAAACATTATCGACTATTCGACTAATATG-GGGA-ACATTAT
1 TTATCCGACTAGC-GCTGGGCGCAAAACATTATCGATTATTCGACT-A-GTGCTGGACACACTAT
14760903 TCGTCGAT
63 TCGTCGAT
* * * * * * * *
14760911 TTATCCGACAAGCGCTGGGTGCAAAACATTGTGGATTATTCGACTAATGTTGTACACATTATTCG
1 TTATCCGACTAGCGCTGGGCGCAAAACATTATCGATTATTCGACTAGTGCTGGACACACTATTCG
* *
14760976 TTGGT
66 TCGAT
* * *
14760981 CTATCCAAGTAGCGCTGGGC
1 TTATCCGACTAGCGCTGGGC
14761001 ACAGAAAGAT
Statistics
Matches: 294, Mismatches: 61, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
67 55 0.19
68 4 0.01
69 9 0.03
70 219 0.74
71 5 0.02
72 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (70 bp):
TTATCCGACTAGCGCTGGGCGCAAAACATTATCGATTATTCGACTAGTGCTGGACACACTATTCG
TCGAT
Found at i:14765488 original size:26 final size:26
Alignment explanation
Indices: 14765417--14765481 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
14765407 ATCGCAGCAT
*
14765417 AGCTGCCAGTAGTAATAATGTAGTAG
1 AGCTGCCAGTAGTAATAATGCAGTAG
* *
14765443 AGCTCCCAATAGTAATAATGCAGTAG
1 AGCTGCCAGTAGTAATAATGCAGTAG
14765469 AGCTGCCAGTAGT
1 AGCTGCCAGTAGT
14765482 CAAAATGGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (26 bp):
AGCTGCCAGTAGTAATAATGCAGTAG
Found at i:14765608 original size:32 final size:31
Alignment explanation
Indices: 14765538--14765806 Score: 254
Period size: 32 Copynumber: 8.4 Consensus size: 31
14765528 GATTGGCTAC
* * *
14765538 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACAGT-ATATGATCGGCACA
*
14765569 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGT-ATATGATCGGCACA
** * *
14765601 CAA-CCATCAGTAATGGTAACATGATCGGTACA
1 -AAGCCATCAGTAACAGT-ATATGATCGGCACA
* *
14765633 AAGCCATCAGTAGCAGTGATATGATCGACACA
1 AAGCCATCAGTAACAGT-ATATGATCGGCACA
*
14765665 CAGCCATCAGTAACAGTGAAATATGATCGGCACA
1 AAGCCATCAGTAACAGT---ATATGATCGGCACA
* *
14765699 AAACCATCAGTAACGGTACTATGATCGGCACA
1 AAGCCATCAGTAACAGTA-TATGATCGGCACA
* * *
14765731 AAGCCATTAGTAACTGTACTATGATCGGTACA
1 AAGCCATCAGTAACAGTA-TATGATCGGCACA
* * *
14765763 AAACCATCAATAACAGTACTATGATCGACACA
1 AAGCCATCAGTAACAGTA-TATGATCGGCACA
14765795 AAGCCATCAGTA
1 AAGCCATCAGTA
14765807 GCATCGCAGC
Statistics
Matches: 195, Mismatches: 37, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
31 13 0.07
32 153 0.78
33 2 0.01
34 27 0.14
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.20
Consensus pattern (31 bp):
AAGCCATCAGTAACAGTATATGATCGGCACA
Found at i:14765800 original size:130 final size:128
Alignment explanation
Indices: 14765538--14765806 Score: 334
Period size: 130 Copynumber: 2.1 Consensus size: 128
14765528 GATTGGCTAC
* * * * *
14765538 AAGCCATAAGT-ACAGTAATGTGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACAC
1 AAGCCATCAGTAACAGTAATATGATCGGCACAAAACCATCAGTAACAGTGATATGATCGGCACAC
* * *
14765602 AACCATCAGTAATGGTAACATGATCGGTACAAAGCCATCAGTAGCAGTGATATGATCGACACA
66 AACCATCAGTAATGGTAACATGATCGGTACAAAACCATCAATAACAGTGATATGATCGACACA
* *
14765665 CAGCCATCAGTAACAGTGAAATATGATCGGCACAAAACCATCAGTAACGGT-ACTATGATCGGCA
1 AAGCCATCAGTAACAGT--AATATGATCGGCACAAAACCATCAGTAACAGTGA-TATGATCGGCA
*
14765729 CA-AAGCCATTAGTAACT-GT-ACTATGATCGGTACAAAACCATCAATAACAGT-ACTATGATCG
63 CACAA-CCATCAGTAA-TGGTAAC-ATGATCGGTACAAAACCATCAATAACAGTGA-TATGATCG
14765790 ACACA
124 ACACA
14765795 AAGCCATCAGTA
1 AAGCCATCAGTA
14765807 GCATCGCAGC
Statistics
Matches: 122, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
127 9 0.07
128 5 0.04
129 6 0.05
130 101 0.83
131 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.20
Consensus pattern (128 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACAAAACCATCAGTAACAGTGATATGATCGGCACAC
AACCATCAGTAATGGTAACATGATCGGTACAAAACCATCAATAACAGTGATATGATCGACACA
Found at i:14765826 original size:26 final size:26
Alignment explanation
Indices: 14765805--14765859 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
14765795 AAGCCATCAG
14765805 TAGCATCGCAGCAAAGCTGCCAGCAA
1 TAGCATCGCAGCAAAGCTGCCAGCAA
* * * *
14765831 TAGTATTGTAGCAAAGCTGCCAGTAA
1 TAGCATCGCAGCAAAGCTGCCAGCAA
14765857 TAG
1 TAG
14765860 TATATGTGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (26 bp):
TAGCATCGCAGCAAAGCTGCCAGCAA
Found at i:14765883 original size:27 final size:27
Alignment explanation
Indices: 14765853--14765904 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
14765843 AAAGCTGCCA
14765853 GTAATAGT-ATATGTGGGCA-AGCCACTG
1 GTAATAGTGAT-TGT-GGCAGAGCCACTG
14765880 GTAATAGTGATTGTGGCAGAGCCAC
1 GTAATAGTGATTGTGGCAGAGCCAC
14765905 CAGTACAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 4 0.17
27 17 0.74
28 2 0.09
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (27 bp):
GTAATAGTGATTGTGGCAGAGCCACTG
Found at i:14766056 original size:23 final size:23
Alignment explanation
Indices: 14766021--14766064 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
14766011 TACCAAACAA
14766021 AGACAAATCAATCATTTAACCAC
1 AGACAAATCAATCATTTAACCAC
14766044 AGACAAAAT-AATCATTTAACC
1 AGAC-AAATCAATCATTTAACC
14766065 TCGAGGGGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.23
Consensus pattern (23 bp):
AGACAAATCAATCATTTAACCAC
Found at i:14766137 original size:27 final size:28
Alignment explanation
Indices: 14766104--14766590 Score: 408
Period size: 27 Copynumber: 18.0 Consensus size: 28
14766094 CAGCGCATTA
*
14766104 CGATCATTTTACCCTA-C-AGGGGTATTA
1 CGATCATTTTACCCTATCGA-GGGTATTT
* * * *
14766131 CGGTCATTTTATCTTAT-GAGGGGATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* * *
14766158 -TAGT-ATTCTACCCTA-CGGGGGTATTT
1 CGA-TCATTTTACCCTATCGAGGGTATTT
* *
14766184 CGGTCATTTTACCTTATCGAGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* * *
14766212 TGGTCATTTAACCCT-TCGAGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* * *
14766239 CGGTCATTTTATCC-ATTTG-GGGTATTT
1 CGATCATTTTACCCTA-TCGAGGGTATTT
* *
14766266 CGATCATTTTACTCT-TCGGGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* * *
14766293 CAATTATTTTAGCC-ATCGAGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
14766320 CGATCATTTTACCC-ATCGAGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* *
14766347 CGATCATTTTACTCT-TCGGGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* * *
14766374 CAATTATTTTAGCC-ATCGAGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
14766401 CGATCATTTTACCC-ATCGAGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
*
14766428 CGATCATTTTATCC-ATCGAGGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* * * *
14766455 TGGTTATTTTA-CCTAT-TAGGGGTATTT
1 CGATCATTTTACCCTATCGA-GGGTATTT
* *
14766482 CGGTCATTTTACCCT-TCGAGAGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* *
14766509 CGATCATTTTA-CCTTTCGAGAGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
* *
14766536 TGGTCATTTTACCC-ATC-AGGGGTATTT
1 CGATCATTTTACCCTATCGA-GGGTATTT
* * *
14766563 CGGTCATTTTACCCTTTAG-GGGTATTT
1 CGATCATTTTACCCTATCGAGGGTATTT
14766590 C
1 C
14766591 AGTCCAAATA
Statistics
Matches: 374, Mismatches: 63, Indels: 46
0.77 0.13 0.10
Matches are distributed among these distances:
26 26 0.07
27 316 0.84
28 32 0.09
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.42
Consensus pattern (28 bp):
CGATCATTTTACCCTATCGAGGGTATTT
Found at i:14766170 original size:53 final size:53
Alignment explanation
Indices: 14766111--14766251 Score: 178
Period size: 53 Copynumber: 2.6 Consensus size: 53
14766101 TTACGATCAT
*
14766111 TTTACCCTACAGGGGTATTACGGTCATTTTATCTTAT-GAGGGGATTTTAGT-A
1 TTTACCCTAC-GGGGTATTTCGGTCATTTTATCTTATCGAGGGGATTTTAGTCA
* * *
14766163 TTCTACCCTACGGGGGTATTTCGGTCATTTTACCTTATCGAGGGTATTTTGGTCA
1 TT-TACCCTAC-GGGGTATTTCGGTCATTTTATCTTATCGAGGGGATTTTAGTCA
*
14766218 TTTAACCCTTCGAGGGTATTTCGGTCATTTTATC
1 TTT-ACCCTACG-GGGTATTTCGGTCATTTTATC
14766252 CATTTGGGGT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
52 2 0.03
53 32 0.42
54 14 0.18
55 29 0.38
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.41
Consensus pattern (53 bp):
TTTACCCTACGGGGTATTTCGGTCATTTTATCTTATCGAGGGGATTTTAGTCA
Found at i:14766590 original size:81 final size:81
Alignment explanation
Indices: 14766166--14766578 Score: 469
Period size: 81 Copynumber: 5.1 Consensus size: 81
14766156 TTTAGTATTC
* * * * * *
14766166 TACCCTACGGGGGTATTTCGGTCATTTTACCTTATCGAGGGTATTTTGGTCATTTAACCCTTCGA
1 TACCCTTCGAGGGTATTTCGATCATTTTACCTT-TCGAGGGTATTTTGGTTATTTTACCCATCGA
14766231 GGGTATTTCGGTCATTT
65 GGGTATTTCGGTCATTT
* * * *** *
14766248 TATCCATTTG-GGGTATTTCGATCATTTTA-CTCTTCGGGGGTATTTCAATTATTTTAGCCATCG
1 TA-CCCTTCGAGGGTATTTCGATCATTTTACCT-TTCGAGGGTATTTTGGTTATTTTACCCATCG
*
14766311 AGGGTATTTCGATCATTT
64 AGGGTATTTCGGTCATTT
* * *** *
14766329 TACCCATCGAGGGTATTTCGATCATTTTA-CTCTTCGGGGGTATTTCAATTATTTTAGCCATCGA
1 TACCCTTCGAGGGTATTTCGATCATTTTACCT-TTCGAGGGTATTTTGGTTATTTTACCCATCGA
*
14766393 GGGTATTTCGATCATTT
65 GGGTATTTCGGTCATTT
* * * *
14766410 TACCCATCGAGGGTATTTCGATCATTTTATCC-ATCGAGGGTATTTTGGTTATTTTACCTAT-TA
1 TACCCTTCGAGGGTATTTCGATCATTTTA-CCTTTCGAGGGTATTTTGGTTATTTTACCCATCGA
14766473 GGGGTATTTCGGTCATTT
65 -GGGTATTTCGGTCATTT
* * *
14766491 TACCCTTCGAGAGTATTTCGATCATTTTACCTTTCGAGAGTATTTTGGTCATTTTACCCATC-AG
1 TACCCTTCGAGGGTATTTCGATCATTTTACCTTTCGAGGGTATTTTGGTTATTTTACCCATCGA-
14766555 GGGTATTTCGGTCATTT
65 GGGTATTTCGGTCATTT
14766572 TACCCTT
1 TACCCTT
14766579 TAGGGGTATT
Statistics
Matches: 292, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
80 7 0.02
81 259 0.89
82 21 0.07
83 5 0.02
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.42
Consensus pattern (81 bp):
TACCCTTCGAGGGTATTTCGATCATTTTACCTTTCGAGGGTATTTTGGTTATTTTACCCATCGAG
GGTATTTCGGTCATTT
Found at i:14771403 original size:20 final size:20
Alignment explanation
Indices: 14771378--14771424 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
14771368 AGTGAATATG
14771378 TGATATTCAATTATGAAATA
1 TGATATTCAATTATGAAATA
* *
14771398 TGATATTGAATTATGAAATG
1 TGATATTCAATTATGAAATA
14771418 TGATATT
1 TGATATT
14771425 ATGGATTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.43
Consensus pattern (20 bp):
TGATATTCAATTATGAAATA
Found at i:14771573 original size:70 final size:71
Alignment explanation
Indices: 14771494--14771766 Score: 270
Period size: 70 Copynumber: 3.9 Consensus size: 71
14771484 ATTTTTGATA
* * * *
14771494 ATTCGACTAGTGCT-GGTCACACTATTCATCGGTTTATCCGACTAACGCTGCGCACAAAACATTG
1 ATTCGACTAGTGCTAGGGCACACTATTCATCGGTTTATCCGACTAGCGCTGGGCGCAAAACATTG
14771558 TTAATT
66 TTAATT
* * ** * * * * *
14771564 ATTCCACTAGTG-TGGGGCACACTATTTGTCGGTTGATCCGACTAGCACTAGGTGCCAAACATTG
1 ATTCGACTAGTGCTAGGGCACACTATTCATCGGTTTATCCGACTAGCGCTGGGCGCAAAACATTG
**
14771628 TTGGTT
66 TTAATT
* * * ** *
14771634 ATTCGACTAGTGCTA-GGCACAGTATTCGTCGTTTTATTTGACTAGCGCTGGGTGCAAAACATT-
1 ATTCGACTAGTGCTAGGGCACACTATTCATCGGTTTATCCGACTAGCGCTGGGCGCAAAACATTG
14771697 TTCAATT
66 TT-AATT
* * *
14771704 ATTCGACTAGTGCT-GGGCACACTATT-AGTCGGTTTTTTCGACTAGCGTTGGGCGCAAAACATT
1 ATTCGACTAGTGCTAGGGCACACTATTCA-TCGGTTTATCCGACTAGCGCTGGGCGCAAAACATT
14771767 ATCGATTTTT
Statistics
Matches: 164, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
69 3 0.02
70 160 0.98
71 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (71 bp):
ATTCGACTAGTGCTAGGGCACACTATTCATCGGTTTATCCGACTAGCGCTGGGCGCAAAACATTG
TTAATT
Found at i:14771677 original size:140 final size:138
Alignment explanation
Indices: 14771451--14771737 Score: 337
Period size: 140 Copynumber: 2.1 Consensus size: 138
14771441 GTAATTGATA
* *
14771451 TTGTCGGTTATCCAACTAGCACTAGAACAAAATATTTTTGATAATTCGACTAGTGCTGGTCACAC
1 TTGTCGGTTATCCAACTAGCACTAGAACAAAACATTGTTGATAATTCGACTAGTGCTGGTCACAC
14771516 TATTCATCGGTTTATCCGACTAACGCTGCGCACAAAACATTGTT-AATTATTCCACTAGTG-TGG
66 TATTCATCGGTTTATCCGACTAACGCTGCGCACAAAACATT-TTCAATTATTCCACTAGTGCT-G
14771579 GGCACACTAT
129 GGCACACTAT
* ** * * *
14771589 TTGTCGGTTGATCCGACTAGCACTAGGTGCCAAACATTGTTGGTTATTCGACTAGTGCTAGG-CA
1 TTGTCGGTT-ATCCAACTAGCACTA-GAACAAAACATTGTTGATAATTCGACTAGTGCT-GGTCA
* * * ** * * ** *
14771653 CAGTATTCGTCGTTTTATTTGACTAGCGCTGGGTGCAAAACATTTTCAATTATTCGACTAGTGCT
63 CACTATTCATCGGTTTATCCGACTAACGCTGCGCACAAAACATTTTCAATTATTCCACTAGTGCT
14771718 GGGCACACTAT
128 GGGCACACTAT
*
14771729 TAGTCGGTT
1 TTGTCGGTT
14771738 TTTTCGACTA
Statistics
Matches: 125, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
138 9 0.07
139 16 0.13
140 97 0.78
141 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (138 bp):
TTGTCGGTTATCCAACTAGCACTAGAACAAAACATTGTTGATAATTCGACTAGTGCTGGTCACAC
TATTCATCGGTTTATCCGACTAACGCTGCGCACAAAACATTTTCAATTATTCCACTAGTGCTGGG
CACACTAT
Found at i:14771798 original size:70 final size:71
Alignment explanation
Indices: 14771494--14771808 Score: 221
Period size: 70 Copynumber: 4.5 Consensus size: 71
14771484 ATTTTTGATA
* * * * * * * *
14771494 ATTCGACTAGTGCTGGTCACACTATTCATCGG-TTTATCCGACTAACGCTGCGCACAAAACATTG
1 ATTCGACTACTGCTGGACACACTATTCGTCGGTTTTATTCGACTAGCGCTGGGCGCAAAACATTA
*
14771558 TTAATT
66 TCAATT
* * * * * * * * * *
14771564 ATTCCACTAGTG-TGGGGCACACTATTTGTCGG-TTGATCCGACTAGCACTAGGTGCCAAACATT
1 ATTCGACTACTGCT-GGACACACTATTCGTCGGTTTTATTCGACTAGCGCTGGGCGCAAAACATT
* ***
14771627 GTTGGTT
65 ATCAATT
* * * *
14771634 ATTCGACTAGTGCTAGG-CACAGTATTCGTC-GTTTTATTTGACTAGCGCTGGGTGCAAAACATT
1 ATTCGACTACTGCT-GGACACACTATTCGTCGGTTTTATTCGACTAGCGCTGGGCGCAAAACATT
*
14771697 TTCAATT
65 ATCAATT
* * * *
14771704 ATTCGACTAGTGCTGGGCACACTATTAGTCGGTTTT-TTCGACTAGCGTTGGGCGCAAAACATTA
1 ATTCGACTACTGCTGGACACACTATTCGTCGGTTTTATTCGACTAGCGCTGGGCGCAAAACATTA
*
14771768 TCGATT
66 TCAATT
* * * *
14771774 TTTCGGCTACTGC-GAGACATACTATTCGACGGTTT
1 ATTCGACTACTGCTG-GACACACTATTCGTCGGTTT
14771809 ATCCAATTAG
Statistics
Matches: 197, Mismatches: 42, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
69 5 0.03
70 184 0.93
71 8 0.04
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (71 bp):
ATTCGACTACTGCTGGACACACTATTCGTCGGTTTTATTCGACTAGCGCTGGGCGCAAAACATTA
TCAATT
Found at i:14771800 original size:140 final size:140
Alignment explanation
Indices: 14771449--14771810 Score: 306
Period size: 140 Copynumber: 2.6 Consensus size: 140
14771439 GTGTAATTGA
* ** * * * * *
14771449 TATT-GTCGGTT-ATCCAACTAGCACTA-GAACAAAATATTTTTGATAATTCGACTAGTGCTG-G
1 TATTAGTCGGTTGATCCGACTAGCACTAGGCGCAAAACATTATCGATTATTCGACTACTGC-GAG
* ** * * **
14771510 TCACACTATTC-ATCGGTTTATCCGACTAACGCTGCGCACAAAACATTGTTAATTATTCCACTAG
65 ACACACTATTCGA-CGGTTTATTTGACTAGCGCTGGGTGCAAAACATTGTTAATTATTCCACTAG
14771574 TGTGGGGCACAC
129 TGTGGGGCACAC
* * * * * * * * *
14771586 TATTTGTCGGTTGATCCGACTAGCACTAGGTGCCAAACATTGTTGGTTATTCGACTAGTGCTAGG
1 TATTAGTCGGTTGATCCGACTAGCACTAGGCGCAAAACATTATCGATTATTCGACTACTGCGAGA
* * * *
14771651 CACAGTATTCGTCGTTTTATTTGACTAGCGCTGGGTGCAAAACATT-TTCAATTATTCGACTAGT
66 CACACTATTCGACGGTTTATTTGACTAGCGCTGGGTGCAAAACATTGTT-AATTATTCCACTAGT
14771715 GCT-GGGCACAC
130 G-TGGGGCACAC
** * ** * * *
14771726 TATTAGTCGGTTTTTTCGACTAGCGTTGGGCGCAAAACATTATCGATTTTTCGGCTACTGCGAGA
1 TATTAGTCGGTTGATCCGACTAGCACTAGGCGCAAAACATTATCGATTATTCGACTACTGCGAGA
*
14771791 CATACTATTCGACGGTTTAT
66 CACACTATTCGACGGTTTAT
14771811 CCAATTAGCG
Statistics
Matches: 177, Mismatches: 41, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
137 4 0.02
138 7 0.04
139 16 0.09
140 149 0.84
141 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (140 bp):
TATTAGTCGGTTGATCCGACTAGCACTAGGCGCAAAACATTATCGATTATTCGACTACTGCGAGA
CACACTATTCGACGGTTTATTTGACTAGCGCTGGGTGCAAAACATTGTTAATTATTCCACTAGTG
TGGGGCACAC
Found at i:14788372 original size:21 final size:21
Alignment explanation
Indices: 14788348--14788394 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
14788338 ACACATCACA
14788348 TCCTCTAGCTCCCACGTGGCC
1 TCCTCTAGCTCCCACGTGGCC
*
14788369 TCCTCTGGCTCCCACGTGGCC
1 TCCTCTAGCTCCCACGTGGCC
14788390 TCCTC
1 TCCTC
14788395 AGTGTTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.06, C:0.49, G:0.19, T:0.26
Consensus pattern (21 bp):
TCCTCTAGCTCCCACGTGGCC
Found at i:14790096 original size:40 final size:40
Alignment explanation
Indices: 14789998--14791020 Score: 1836
Period size: 40 Copynumber: 25.6 Consensus size: 40
14789988 TCCTCGTTCA
* * * * *
14789998 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
14790037 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790077 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790117 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790157 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790197 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790237 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790277 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790317 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790357 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790397 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790437 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790477 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790517 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790557 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790597 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790637 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790677 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790717 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790757 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790797 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790837 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14790877 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14790917 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
14790957 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
14790997 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14791021 CAGCATTCAA
Statistics
Matches: 960, Mismatches: 20, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
39 37 0.04
40 915 0.95
41 8 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14791029 original size:41 final size:41
Alignment explanation
Indices: 14790952--14791029 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
14790942 TTAGTATCTC
* * *
14790952 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
14790993 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
14791030 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:14791960 original size:12 final size:13
Alignment explanation
Indices: 14791934--14791962 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
14791924 TGCGAAATTC
14791934 AAATAGTGAAATG
1 AAATAGTGAAATG
14791947 AAATAGTG-AATG
1 AAATAGTGAAATG
14791959 AAAT
1 AAAT
14791963 TATATTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (13 bp):
AAATAGTGAAATG
Found at i:14794593 original size:289 final size:289
Alignment explanation
Indices: 14794074--14794652 Score: 1158
Period size: 289 Copynumber: 2.0 Consensus size: 289
14794064 CAAAAATTGC
14794074 TGAGGAGGAGAGACACACACACATTAGCTTAATTTAGGTTTAGTTTTCTCTAGTTTTCTCTACAC
1 TGAGGAGGAGAGACACACACACATTAGCTTAATTTAGGTTTAGTTTTCTCTAGTTTTCTCTACAC
14794139 TTTTTCTAGGATTCTATTTTTCTCTTCTTCTACTTTAGATTAGAGTTTATTTTTCTGCATTTAAC
66 TTTTTCTAGGATTCTATTTTTCTCTTCTTCTACTTTAGATTAGAGTTTATTTTTCTGCATTTAAC
14794204 TCTTGTTCTTGTTGTTCTTTATGTTAGTTAAGTTGGTTAACACTATAGCTAAATTTTATTTATAT
131 TCTTGTTCTTGTTGTTCTTTATGTTAGTTAAGTTGGTTAACACTATAGCTAAATTTTATTTATAT
14794269 TTTCAGTCCCTGTACTTCTCTTTCAAGACTCTTTAAGCTATAGTTTAGTATATTTTAGTTTATTT
196 TTTCAGTCCCTGTACTTCTCTTTCAAGACTCTTTAAGCTATAGTTTAGTATATTTTAGTTTATTT
14794334 TACTTTAAATATGTCAAAGCTTTTTATTT
261 TACTTTAAATATGTCAAAGCTTTTTATTT
14794363 TGAGGAGGAGAGACACACACACATTAGCTTAATTTAGGTTTAGTTTTCTCTAGTTTTCTCTACAC
1 TGAGGAGGAGAGACACACACACATTAGCTTAATTTAGGTTTAGTTTTCTCTAGTTTTCTCTACAC
14794428 TTTTTCTAGGATTCTATTTTTCTCTTCTTCTACTTTAGATTAGAGTTTATTTTTCTGCATTTAAC
66 TTTTTCTAGGATTCTATTTTTCTCTTCTTCTACTTTAGATTAGAGTTTATTTTTCTGCATTTAAC
14794493 TCTTGTTCTTGTTGTTCTTTATGTTAGTTAAGTTGGTTAACACTATAGCTAAATTTTATTTATAT
131 TCTTGTTCTTGTTGTTCTTTATGTTAGTTAAGTTGGTTAACACTATAGCTAAATTTTATTTATAT
14794558 TTTCAGTCCCTGTACTTCTCTTTCAAGACTCTTTAAGCTATAGTTTAGTATATTTTAGTTTATTT
196 TTTCAGTCCCTGTACTTCTCTTTCAAGACTCTTTAAGCTATAGTTTAGTATATTTTAGTTTATTT
14794623 TACTTTAAATATGTCAAAGCTTTTTATTT
261 TACTTTAAATATGTCAAAGCTTTTTATTT
14794652 T
1 T
14794653 TTTCTTGCTT
Statistics
Matches: 290, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
289 290 1.00
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.50
Consensus pattern (289 bp):
TGAGGAGGAGAGACACACACACATTAGCTTAATTTAGGTTTAGTTTTCTCTAGTTTTCTCTACAC
TTTTTCTAGGATTCTATTTTTCTCTTCTTCTACTTTAGATTAGAGTTTATTTTTCTGCATTTAAC
TCTTGTTCTTGTTGTTCTTTATGTTAGTTAAGTTGGTTAACACTATAGCTAAATTTTATTTATAT
TTTCAGTCCCTGTACTTCTCTTTCAAGACTCTTTAAGCTATAGTTTAGTATATTTTAGTTTATTT
TACTTTAAATATGTCAAAGCTTTTTATTT
Done.