Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 51 of 126
Found at i:14797758 original size:24 final size:23
Alignment explanation
Indices: 14797713--14797758 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
14797703 TACCTTTTCA
**
14797713 TTATACTTTATTTTGATTAATTT
1 TTATACTTTATTTTGAAAAATTT
*
14797736 TTATAACTTTATTTTTAAAAATT
1 TTAT-ACTTTATTTTGAAAAATT
14797759 CGATTTTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATACTTTATTTTGAAAAATTT
Found at i:14808064 original size:29 final size:29
Alignment explanation
Indices: 14808022--14808083 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
14808012 AAAGGGAGTT
**
14808022 AATAAAACGGGAAAAAGTTTCAACGAAAA
1 AATAAAACGGGAAAAAGTCACAACGAAAA
* *
14808051 AATAAAACTGGAAAGAGTCACAACGAAAA
1 AATAAAACGGGAAAAAGTCACAACGAAAA
14808080 AATA
1 AATA
14808084 GGTGATGGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.60, C:0.11, G:0.16, T:0.13
Consensus pattern (29 bp):
AATAAAACGGGAAAAAGTCACAACGAAAA
Found at i:14810643 original size:15 final size:15
Alignment explanation
Indices: 14810625--14810664 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
14810615 AAAATACATG
14810625 ATAATAAATATAAGA
1 ATAATAAATATAAGA
14810640 ATAATAGAA-ATAAGA
1 ATAATA-AATATAAGA
*
14810655 ATAACAAATA
1 ATAATAAATA
14810665 AATAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 2 0.09
15 18 0.82
16 2 0.09
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (15 bp):
ATAATAAATATAAGA
Found at i:14810652 original size:24 final size:24
Alignment explanation
Indices: 14810576--14810645 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
14810566 GAGGAATAAA
*
14810576 AATAATAAACATAATGAAACA-A-AT
1 AATAATAAAAATAA-GAAA-ATACAT
*
14810600 AAAAATAAAAATAAGAAAATACAT
1 AATAATAAAAATAAGAAAATACAT
* *
14810624 GATAATAAATATAAGAATAATA
1 AATAATAAAAATAAGAA-AATA
14810646 GAAATAAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.03
23 5 0.13
24 28 0.74
25 4 0.11
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (24 bp):
AATAATAAAAATAAGAAAATACAT
Found at i:14810658 original size:21 final size:19
Alignment explanation
Indices: 14810627--14810689 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 19
14810617 AATACATGAT
*
14810627 AATAAATATAAGAATAATAGA
1 AATAAAAATAA-AATAA-AGA
* *
14810648 AATAAGAATAACAAATAAATA
1 AATAAAAAT-A-AAATAAAGA
*
14810669 AATAAAAATAAAATAAGGA
1 AATAAAAATAAAATAAAGA
14810688 AA
1 AA
14810690 AAGAAGGGGA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 9 0.26
20 1 0.03
21 17 0.50
22 6 0.18
23 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.08, T:0.19
Consensus pattern (19 bp):
AATAAAAATAAAATAAAGA
Found at i:14817786 original size:17 final size:18
Alignment explanation
Indices: 14817753--14817788 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14817743 CCCATTATCT
*
14817753 TTTTTTTCCATTATTTAA
1 TTTTTTTCCACTATTTAA
14817771 TTTTTTTCCACT-TTTAA
1 TTTTTTTCCACTATTTAA
14817788 T
1 T
14817789 CGTAGCTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTTTCCACTATTTAA
Found at i:14829546 original size:25 final size:26
Alignment explanation
Indices: 14829512--14829562 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
14829502 CATTAAAGTT
14829512 AAAAAAGAATTTCAATTA-TCCCAAA
1 AAAAAAGAATTTCAATTATTCCCAAA
14829537 AAAAAAGAATTTCAATTATTCCCAAA
1 AAAAAAGAATTTCAATTATTCCCAAA
14829563 TTTTAATTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.55, C:0.16, G:0.04, T:0.25
Consensus pattern (26 bp):
AAAAAAGAATTTCAATTATTCCCAAA
Found at i:14831723 original size:10 final size:10
Alignment explanation
Indices: 14831704--14831733 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
14831694 AGGTGGTTGG
14831704 TTAGTGGGAT
1 TTAGTGGGAT
*
14831714 TTAGTAGGAT
1 TTAGTGGGAT
14831724 TTAGTGGGAT
1 TTAGTGGGAT
14831734 ATGGGTAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (10 bp):
TTAGTGGGAT
Found at i:14832542 original size:36 final size:36
Alignment explanation
Indices: 14832463--14832561 Score: 117
Period size: 36 Copynumber: 2.8 Consensus size: 36
14832453 GTAAGCTGTG
* * * *
14832463 TGAGGCACACGACCATGTGAAATCATGTAGTCCGTG
1 TGAGGCACACGACCGTGTGAAATCATATAGGCCGTA
*
14832499 TGAGGCACACGACCGTGTGAAATCATATAGGCCTTA
1 TGAGGCACACGACCGTGTGAAATCATATAGGCCGTA
* * **
14832535 TGGGGCACATGGTCGTGTGAAATCATA
1 TGAGGCACACGACCGTGTGAAATCATA
14832562 CAGATCGTGT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (36 bp):
TGAGGCACACGACCGTGTGAAATCATATAGGCCGTA
Found at i:14842449 original size:41 final size:43
Alignment explanation
Indices: 14842342--14842500 Score: 135
Period size: 41 Copynumber: 3.7 Consensus size: 43
14842332 CTATCGAACA
* * * * **
14842342 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAATCAAATATCG
* * *
14842385 ATGCCACTGTCCCGGACAGGGTCTTACACG-AATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAATCAAATATCG
* ** *
14842426 ATGCCAATGTCCTAGACATGGTCTTACACATAATCGCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAAT--CAAATATCG
* *
14842471 ATGCC-ATCATCCCAGACTTGGTCTTACACG
1 ATGCCAAT-GTCCCAGACATGGTCTTACACG
14842501 AGAACACATA
Statistics
Matches: 92, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 27 0.29
42 9 0.10
43 24 0.26
44 7 0.08
45 25 0.27
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGCAATCAAATATCG
Found at i:14842960 original size:106 final size:106
Alignment explanation
Indices: 14842775--14842985 Score: 404
Period size: 106 Copynumber: 2.0 Consensus size: 106
14842765 CTATTTTTTT
14842775 TCCCCGGTCCAAGTCTGATTTCTTTTGTTCTTGATCTATAAAATTTCAAATTAAGCTCATTTAAA
1 TCCCCGGTCCAAGTCTGATTTCTTTTGTTCTTGATCTATAAAATTTCAAATTAAGCTCATTTAAA
14842840 CACAATTTCATTCAATTTAATCCAAAAACACACAAATGATG
66 CACAATTTCATTCAATTTAATCCAAAAACACACAAATGATG
*
14842881 TCCCCGGTCCAAGTCTGATTTCTTTTGTTCTTGATCTATACAATTTCAAATTAAGCTCATTTAAA
1 TCCCCGGTCCAAGTCTGATTTCTTTTGTTCTTGATCTATAAAATTTCAAATTAAGCTCATTTAAA
*
14842946 CACAATTTCATTCAATTTAATCCAAAAACACATAAATGAT
66 CACAATTTCATTCAATTTAATCCAAAAACACACAAATGAT
14842986 CAAATTACTA
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 103 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (106 bp):
TCCCCGGTCCAAGTCTGATTTCTTTTGTTCTTGATCTATAAAATTTCAAATTAAGCTCATTTAAA
CACAATTTCATTCAATTTAATCCAAAAACACACAAATGATG
Found at i:14847097 original size:28 final size:28
Alignment explanation
Indices: 14847057--14847138 Score: 137
Period size: 28 Copynumber: 2.9 Consensus size: 28
14847047 AAAACGTATA
* *
14847057 AAAATGGAAGCCTTTATCGCAATCTATG
1 AAAATGGAAGCCTTTGTGGCAATCTATG
*
14847085 AAAATAGAAGCCTTTGTGGCAATCTATG
1 AAAATGGAAGCCTTTGTGGCAATCTATG
14847113 AAAATGGAAGCCTTTGTGGCAATCTA
1 AAAATGGAAGCCTTTGTGGCAATCTA
14847139 AGGAAAGGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (28 bp):
AAAATGGAAGCCTTTGTGGCAATCTATG
Found at i:14847153 original size:28 final size:28
Alignment explanation
Indices: 14847057--14847154 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
14847047 AAAACGTATA
* * *
14847057 AAAATGGAAGCCTTTATCGCAATCTATG
1 AAAATGGAAGCCTTTGTGGCAATCTAAG
* *
14847085 AAAATAGAAGCCTTTGTGGCAATCTATG
1 AAAATGGAAGCCTTTGTGGCAATCTAAG
14847113 AAAATGGAAGCCTTTGTGGCAATCTAAG
1 AAAATGGAAGCCTTTGTGGCAATCTAAG
*
14847141 GAAA-GGAACGCCTT
1 AAAATGGAA-GCCTT
14847155 CATGGTGCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 4 0.06
28 59 0.94
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (28 bp):
AAAATGGAAGCCTTTGTGGCAATCTAAG
Found at i:14848486 original size:66 final size:66
Alignment explanation
Indices: 14848393--14848524 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
14848383 GATAACTAAA
14848393 AAAATTGGAACAACCTTATGTGTAAATAGGAAACCTATCCTGGCATTATAAAAGTTGAAAATAGA
1 AAAATTGGAACAACCTTATGTGTAAATAGGAAACCTATCCTGGCATTATAAAAGTTGAAAATAGA
14848458 T
66 T
14848459 AAAATTGGAACAACCTTATGTGTAAATAGGAAACCTATCCTGGCATTATAAAAGTTGAAAATAGA
1 AAAATTGGAACAACCTTATGTGTAAATAGGAAACCTATCCTGGCATTATAAAAGTTGAAAATAGA
14848524 T
66 T
14848525 CAATATAGAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (66 bp):
AAAATTGGAACAACCTTATGTGTAAATAGGAAACCTATCCTGGCATTATAAAAGTTGAAAATAGA
T
Found at i:14848777 original size:18 final size:17
Alignment explanation
Indices: 14848737--14848779 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
14848727 AATACTTTAA
*
14848737 ATAT-AAAATTATAAAT
1 ATATAAAAATAATAAAT
*
14848753 GTATAAAAATAATATAAT
1 ATATAAAAATAATA-AAT
14848771 ATATAAAAA
1 ATATAAAAA
14848780 AACTGCCACG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 3 0.14
17 8 0.36
18 11 0.50
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
ATATAAAAATAATAAAT
Found at i:14849498 original size:22 final size:22
Alignment explanation
Indices: 14849465--14849513 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
14849455 AAAGTAATTG
*
14849465 ACTAAAATATAAATGTAAAAAA
1 ACTAAAATATAAATGAAAAAAA
*
14849487 ACTAGAAA-ATAAGTGAAAAAAA
1 ACTA-AAATATAAATGAAAAAAA
14849509 A-TAAA
1 ACTAAA
14849514 CTGAATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 2 0.08
21 2 0.08
22 17 0.71
23 3 0.12
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.18
Consensus pattern (22 bp):
ACTAAAATATAAATGAAAAAAA
Found at i:14867149 original size:16 final size:18
Alignment explanation
Indices: 14867114--14867151 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14867104 ATTCTTATTT
*
14867114 AAATAAAATACATTAGTA
1 AAATAAAATACATAAGTA
14867132 AAATAAAATA-A-AAGTA
1 AAATAAAATACATAAGTA
14867148 AAAT
1 AAAT
14867152 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (18 bp):
AAATAAAATACATAAGTA
Found at i:14871099 original size:634 final size:634
Alignment explanation
Indices: 14869891--14871158 Score: 2527
Period size: 634 Copynumber: 2.0 Consensus size: 634
14869881 AGAAGAGAAA
14869891 TTAAACCTCCAAAGAAGTATGTCGAGGCTGATCTAGTTGCTTATACTTTAAATGTAGCTGAAGAT
1 TTAAACCTCCAAAGAAGTATGTCGAGGCTGATCTAGTTGCTTATACTTTAAATGTAGCTGAAGAT
14869956 ATAGATGCAAATCAAGAGCCATCTAATTATTCTGATGCGGTTAGCTGTGAAAACTCAGAAAAGTG
66 ATAGATGCAAATCAAGAGCCATCTAATTATTCTGATGCGGTTAGCTGTGAAAACTCAGAAAAGTG
14870021 GATGTTTGTTATGCAAAAGGAGATGGAATCACTCCGCAAAAACAAAACATGGGATATTGTGAAAC
131 GATGTTTGTTATGCAAAAGGAGATGGAATCACTCCGCAAAAACAAAACATGGGATATTGTGAAAC
14870086 TTCCTAAAGGTAAAAAGGTTGTTCGTTGTAAATGGGTGTTTAAAAAGAAAGAAGTGACTCTAGAA
196 TTCCTAAAGGTAAAAAGGTTGTTCGTTGTAAATGGGTGTTTAAAAAGAAAGAAGTGACTCTAGAA
14870151 TTTGAAAAACCCAGATATAAAGCAAGGCTTGTTGCAAAGGGTTACAATCAAATTCTAGGAGTGGA
261 TTTGAAAAACCCAGATATAAAGCAAGGCTTGTTGCAAAGGGTTACAATCAAATTCTAGGAGTGGA
14870216 CTTCACAGATATGTTTTCCCCAATTGTGAAGCATAGTTCGATTCAAGCTTTTCTTGGTATTGTGG
326 CTTCACAGATATGTTTTCCCCAATTGTGAAGCATAGTTCGATTCAAGCTTTTCTTGGTATTGTGG
14870281 CCATGCATGATTTGGAGCTTGAGTAGTTAGATGTAAAAACTATATTTTTGCATGGAGAACTTAAG
391 CCATGCATGATTTGGAGCTTGAGTAGTTAGATGTAAAAACTATATTTTTGCATGGAGAACTTAAG
14870346 GAGGATATTTACATGTAACAACCAGAGGGTTTTACAGTCTCAAAAAAAGAGGACTATATTTGCTT
456 GAGGATATTTACATGTAACAACCAGAGGGTTTTACAGTCTCAAAAAAAGAGGACTATATTTGCTT
14870411 GCTGAAAAAATCCCTTTATAGTTTGAAACAGTCACTAAGACAGTGGTACAAGAGGTTTGATTCCT
521 GCTGAAAAAATCCCTTTATAGTTTGAAACAGTCACTAAGACAGTGGTACAAGAGGTTTGATTCCT
*
14870476 TTATGGCTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTG
586 TTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTG
14870525 TTAAACCTCCAAAGAAGTATGTCGAGGCTGATCTAGTTGCTTATACTTTAAATGTAGCTGAAGAT
1 TTAAACCTCCAAAGAAGTATGTCGAGGCTGATCTAGTTGCTTATACTTTAAATGTAGCTGAAGAT
14870590 ATAGATGCAAATCAAGAGCCATCTAATTATTCTGATGCGGTTAGCTGTGAAAACTCAGAAAAGTG
66 ATAGATGCAAATCAAGAGCCATCTAATTATTCTGATGCGGTTAGCTGTGAAAACTCAGAAAAGTG
14870655 GATGTTTGTTATGCAAAAGGAGATGGAATCACTCCGCAAAAACAAAACATGGGATATTGTGAAAC
131 GATGTTTGTTATGCAAAAGGAGATGGAATCACTCCGCAAAAACAAAACATGGGATATTGTGAAAC
14870720 TTCCTAAAGGTAAAAAGGTTGTTCGTTGTAAATGGGTGTTTAAAAAGAAAGAAGTGACTCTAGAA
196 TTCCTAAAGGTAAAAAGGTTGTTCGTTGTAAATGGGTGTTTAAAAAGAAAGAAGTGACTCTAGAA
14870785 TTTGAAAAACCCAGATATAAAGCAAGGCTTGTTGCAAAGGGTTACAATCAAATTCTAGGAGTGGA
261 TTTGAAAAACCCAGATATAAAGCAAGGCTTGTTGCAAAGGGTTACAATCAAATTCTAGGAGTGGA
14870850 CTTCACAGATATGTTTTCCCCAATTGTGAAGCATAGTTCGATTCAAGCTTTTCTTGGTATTGTGG
326 CTTCACAGATATGTTTTCCCCAATTGTGAAGCATAGTTCGATTCAAGCTTTTCTTGGTATTGTGG
14870915 CCATGCATGATTTGGAGCTTGAGTAGTTAGATGTAAAAACTATATTTTTGCATGGAGAACTTAAG
391 CCATGCATGATTTGGAGCTTGAGTAGTTAGATGTAAAAACTATATTTTTGCATGGAGAACTTAAG
14870980 GAGGATATTTACATGTAACAACCAGAGGGTTTTACAGTCTCAAAAAAAGAGGACTATATTTGCTT
456 GAGGATATTTACATGTAACAACCAGAGGGTTTTACAGTCTCAAAAAAAGAGGACTATATTTGCTT
14871045 GCTGAAAAAATCCCTTTATAGTTTGAAACAGTCACTAAGACAGTGGTACAAGAGGTTTGATTCCT
521 GCTGAAAAAATCCCTTTATAGTTTGAAACAGTCACTAAGACAGTGGTACAAGAGGTTTGATTCCT
14871110 TTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTG
586 TTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTG
14871159 CTTTAAGAAA
Statistics
Matches: 633, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
634 633 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31
Consensus pattern (634 bp):
TTAAACCTCCAAAGAAGTATGTCGAGGCTGATCTAGTTGCTTATACTTTAAATGTAGCTGAAGAT
ATAGATGCAAATCAAGAGCCATCTAATTATTCTGATGCGGTTAGCTGTGAAAACTCAGAAAAGTG
GATGTTTGTTATGCAAAAGGAGATGGAATCACTCCGCAAAAACAAAACATGGGATATTGTGAAAC
TTCCTAAAGGTAAAAAGGTTGTTCGTTGTAAATGGGTGTTTAAAAAGAAAGAAGTGACTCTAGAA
TTTGAAAAACCCAGATATAAAGCAAGGCTTGTTGCAAAGGGTTACAATCAAATTCTAGGAGTGGA
CTTCACAGATATGTTTTCCCCAATTGTGAAGCATAGTTCGATTCAAGCTTTTCTTGGTATTGTGG
CCATGCATGATTTGGAGCTTGAGTAGTTAGATGTAAAAACTATATTTTTGCATGGAGAACTTAAG
GAGGATATTTACATGTAACAACCAGAGGGTTTTACAGTCTCAAAAAAAGAGGACTATATTTGCTT
GCTGAAAAAATCCCTTTATAGTTTGAAACAGTCACTAAGACAGTGGTACAAGAGGTTTGATTCCT
TTATGACTTCTCATGATTTCAAAAGAAGTAGCTTTGACAGTTGTGTTTG
Found at i:14874370 original size:33 final size:33
Alignment explanation
Indices: 14874328--14874411 Score: 123
Period size: 33 Copynumber: 2.5 Consensus size: 33
14874318 AATCAGCAGG
*
14874328 TTGGGCCTGGTCATGGTGGTACCAGATAACAGA
1 TTGGGCCTGGTCATGGTGGTACCAGACAACAGA
* *
14874361 TTGGGCCTGGTCATGGTGGTACCTGGCAACAGA
1 TTGGGCCTGGTCATGGTGGTACCAGACAACAGA
* *
14874394 TTGGGCCTGCTAATGGTG
1 TTGGGCCTGGTCATGGTG
14874412 CAGTTGGGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.26
Consensus pattern (33 bp):
TTGGGCCTGGTCATGGTGGTACCAGACAACAGA
Found at i:14886357 original size:120 final size:120
Alignment explanation
Indices: 14886144--14886381 Score: 440
Period size: 120 Copynumber: 2.0 Consensus size: 120
14886134 AGACTATTAT
* *
14886144 AGAAATATATTAAATTTTGGTCTAATAATTTTATTTAATTGATAGTTAATTAAGATACAAGTGTA
1 AGAAATATATTAAAGTTTGGTCTAATAATTTTATTTAATTGATAGTTAATAAAGATACAAGTGTA
*
14886209 ATGATCATAAAGTTAGTGATATCGAAAAATACAGTTTTAGAACCCCATTTTCAAA
66 ATGATCATAAAGTTAGTGATATCGAAAAATACAGTTTTAGAACACCATTTTCAAA
*
14886264 AGAAATATATTAAAGTTTGGTCTAATAATTTTATTTAATTGATAGTTAATAAAGGTACAAGTGTA
1 AGAAATATATTAAAGTTTGGTCTAATAATTTTATTTAATTGATAGTTAATAAAGATACAAGTGTA
14886329 ATGATCATAAAGTTAGTGATATCGAAAAATACAGTTTTAGAACACCATTTTCA
66 ATGATCATAAAGTTAGTGATATCGAAAAATACAGTTTTAGAACACCATTTTCA
14886382 TAAACTGAGA
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 114 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (120 bp):
AGAAATATATTAAAGTTTGGTCTAATAATTTTATTTAATTGATAGTTAATAAAGATACAAGTGTA
ATGATCATAAAGTTAGTGATATCGAAAAATACAGTTTTAGAACACCATTTTCAAA
Found at i:14888566 original size:22 final size:22
Alignment explanation
Indices: 14888486--14888568 Score: 71
Period size: 22 Copynumber: 3.8 Consensus size: 22
14888476 AATTGGTTGA
* *
14888486 GTTTGGTTAGTTAATGAACTAT
1 GTTTGTTTAGTTGATGAACTAT
* * *
14888508 GTTTGCTTAGTTGATG-AGTTT
1 GTTTGTTTAGTTGATGAACTAT
**
14888529 GTGTT-TATTAAATGATGAACTAT
1 GT-TTGT-TTAGTTGATGAACTAT
14888552 GTTTGTTTAGTTGATGA
1 GTTTGTTTAGTTGATGA
14888569 GTACATAGGT
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
21 5 0.11
22 35 0.76
23 6 0.13
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (22 bp):
GTTTGTTTAGTTGATGAACTAT
Found at i:14898210 original size:7 final size:7
Alignment explanation
Indices: 14898200--14898257 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
14898190 TTTAAATTAA
14898200 AAATATT
1 AAATATT
14898207 AAAT-TT
1 AAATATT
*
14898213 AAAGTA-A
1 AAA-TATT
14898220 AAATA-T
1 AAATATT
14898226 AAAT-TT
1 AAATATT
14898232 ATAATATT
1 A-AATATT
14898240 AAATATT
1 AAATATT
14898247 AAAATATT
1 -AAATATT
14898255 AAA
1 AAA
14898258 AAAGACTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 13 0.30
7 20 0.47
8 10 0.23
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (7 bp):
AAATATT
Found at i:14898228 original size:19 final size:20
Alignment explanation
Indices: 14898189--14898232 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
14898179 AATTAGGTTT
*
14898189 ATTTAAATTAAAAATATTAA
1 ATTTAAAGTAAAAATATTAA
14898209 ATTTAAAGTAAAAATA-TAA
1 ATTTAAAGTAAAAATATTAA
14898228 ATTTA
1 ATTTA
14898233 TAATATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
ATTTAAAGTAAAAATATTAA
Found at i:14898452 original size:22 final size:22
Alignment explanation
Indices: 14898401--14898464 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
14898391 ATTAATTTTT
*
14898401 AATAAAATTTT-AAAA-TATATA
1 AATAAAATTTTAAAAATTA-AAA
*
14898422 ATTATAAATTTTAAAAATTAAAA
1 AATA-AAATTTTAAAAATTAAAA
* *
14898445 AATAAAATATAAAAAATTAA
1 AATAAAATTTTAAAAATTAA
14898465 TTTAAATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 3 0.09
22 21 0.60
23 9 0.26
24 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AATAAAATTTTAAAAATTAAAA
Found at i:14898491 original size:23 final size:23
Alignment explanation
Indices: 14898452--14898505 Score: 76
Period size: 21 Copynumber: 2.3 Consensus size: 23
14898442 AAAAATAAAA
14898452 TATAAAAAATTAATTTA-AA-TT
1 TATAAAAAATTAATTTAGAATTT
14898473 TATAAAAAATTATATTTTAGAATTT
1 TATAAAAAATTA-A-TTTAGAATTT
14898498 TATAAAAA
1 TATAAAAA
14898506 TATTTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 12 0.41
22 1 0.03
23 4 0.14
24 2 0.07
25 10 0.34
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TATAAAAAATTAATTTAGAATTT
Found at i:14898516 original size:11 final size:11
Alignment explanation
Indices: 14898500--14898528 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14898490 TAGAATTTTA
14898500 TAAAAATATTT
1 TAAAAATATTT
14898511 TAAAAATATTT
1 TAAAAATATTT
14898522 TAAAAAT
1 TAAAAAT
14898529 TTTATATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
TAAAAATATTT
Found at i:14898528 original size:22 final size:21
Alignment explanation
Indices: 14898484--14898528 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
14898474 ATAAAAAATT
*
14898484 ATATTTTAGAATTTTATAAAA
1 ATATTTTAAAATTTTATAAAA
14898505 ATATTTTAAAAATATTT-TAAAA
1 ATATTTT-AAAAT-TTTATAAAA
14898527 AT
1 AT
14898529 TTTATATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 11 0.52
23 3 0.14
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
ATATTTTAAAATTTTATAAAA
Found at i:14903782 original size:8 final size:8
Alignment explanation
Indices: 14903769--14903814 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
14903759 TAGTAAAATA
14903769 ATATTTAT
1 ATATTTAT
*
14903777 ATATTTAA
1 ATATTTAT
* *
14903785 AAATAATAT
1 ATAT-TTAT
14903794 ATATTTAT
1 ATATTTAT
14903802 ATATTTAT
1 ATATTTAT
14903810 ATATT
1 ATATT
14903815 CAAACCCCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 26 0.84
9 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
ATATTTAT
Found at i:14909596 original size:11 final size:11
Alignment explanation
Indices: 14909580--14909618 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
14909570 ACTACTATAT
14909580 ATTACTATTAA
1 ATTACTATTAA
*
14909591 ATTACTACTCTAT
1 ATTACTA-T-TAA
14909604 ATTACTATTAA
1 ATTACTATTAA
14909615 ATTA
1 ATTA
14909619 AGTTAGAGCG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 13 0.54
12 2 0.08
13 9 0.38
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (11 bp):
ATTACTATTAA
Found at i:14909604 original size:24 final size:24
Alignment explanation
Indices: 14909569--14909618 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
14909559 GGATCAACCC
14909569 TACTACTATATATTACTATTAAAT
1 TACTACTATATATTACTATTAAAT
*
14909593 TACTACTCTATATTACTATTAAAT
1 TACTACTATATATTACTATTAAAT
14909617 TA
1 TA
14909619 AGTTAGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (24 bp):
TACTACTATATATTACTATTAAAT
Found at i:14909609 original size:13 final size:12
Alignment explanation
Indices: 14909569--14909610 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
14909559 GGATCAACCC
14909569 TACTACTATATAT
1 TACTACT-TATAT
*
14909582 TACTA-TTAAAT
1 TACTACTTATAT
14909593 TACTACTCTATAT
1 TACTACT-TATAT
14909606 TACTA
1 TACTA
14909611 TTAAATTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 9 0.36
12 2 0.08
13 14 0.56
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (12 bp):
TACTACTTATAT
Found at i:14914060 original size:24 final size:24
Alignment explanation
Indices: 14914016--14914065 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
14914006 CGCAATAAAG
*
14914016 AATTTAAAAATTATCAAAAATCAA
1 AATTTAAAAAGTATCAAAAATCAA
* *
14914040 AATTATAAAAAGT-TCATAAATTAA
1 AATT-TAAAAAGTATCAAAAATCAA
14914064 AA
1 AA
14914066 AAAAACATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (24 bp):
AATTTAAAAAGTATCAAAAATCAA
Found at i:14914447 original size:17 final size:17
Alignment explanation
Indices: 14914425--14914467 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
14914415 TGATAAACTT
* *
14914425 AAAAAATTAAGTGCGGA
1 AAAAAATTAAGTACGAA
*
14914442 AAAAAA-TAAGTACTAA
1 AAAAAATTAAGTACGAA
14914458 AAAAAATTAA
1 AAAAAATTAA
14914468 AAGTTGAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.65, C:0.05, G:0.12, T:0.19
Consensus pattern (17 bp):
AAAAAATTAAGTACGAA
Found at i:14917885 original size:20 final size:21
Alignment explanation
Indices: 14917845--14917885 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14917835 AACTTGGTCA
* *
14917845 TTTTCCTATAAAATAAGTTTT
1 TTTTCCTATAAAACAACTTTT
14917866 TTTTCCTAT-AAACAACTTTT
1 TTTTCCTATAAAACAACTTTT
14917886 AAAGCGTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.32, C:0.15, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTTCCTATAAAACAACTTTT
Found at i:14918085 original size:26 final size:26
Alignment explanation
Indices: 14918055--14918124 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 26
14918045 ATACATATCT
14918055 AATTATTTATATTTAGTCA-TATAATA
1 AATTATTTATATTTA-TCATTATAATA
* *
14918081 AATTATTAATATAATTTATTATTTTAATA
1 AATTATT--TAT-ATTTATCATTATAATA
14918110 AATTATTTAATATTT
1 AATTATTT-ATATTT
14918125 CAATTTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
26 7 0.19
27 5 0.14
28 7 0.19
29 18 0.49
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (26 bp):
AATTATTTATATTTATCATTATAATA
Found at i:14918094 original size:16 final size:16
Alignment explanation
Indices: 14918073--14918122 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
14918063 ATATTTAGTC
14918073 ATATAATAAATTATTA
1 ATATAATAAATTATTA
14918089 ATATAAT---TTATTA
1 ATATAATAAATTATTA
* *
14918102 TTTTAATAAATTATTTA
1 ATATAATAAATTA-TTA
14918119 ATAT
1 ATAT
14918123 TTCAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 11 0.42
16 10 0.38
17 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:14918098 original size:29 final size:30
Alignment explanation
Indices: 14918065--14918122 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
14918055 AATTATTTAT
14918065 ATTTAGTCA-TATAATAAATTA-TTAATATA
1 ATTTA-TCATTATAATAAATTATTTAATATA
* *
14918094 ATTTATTATTTTAATAAATTATTTAATAT
1 ATTTATCATTATAATAAATTATTTAATAT
14918123 TTCAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 16 0.64
30 7 0.28
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
ATTTATCATTATAATAAATTATTTAATATA
Found at i:14918474 original size:7 final size:7
Alignment explanation
Indices: 14918462--14918502 Score: 66
Period size: 7 Copynumber: 5.9 Consensus size: 7
14918452 TACGCAAAAA
14918462 AAAATAT
1 AAAATAT
14918469 AAAATAT
1 AAAATAT
14918476 AAAATAT
1 AAAATAT
14918483 AAAAT-T
1 AAAATAT
14918489 ATAAATAT
1 A-AAATAT
14918497 AAAATA
1 AAAATA
14918503 AACTCAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 2 0.06
7 28 0.88
8 2 0.06
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAATAT
Found at i:14930203 original size:25 final size:25
Alignment explanation
Indices: 14930175--14930224 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
14930165 CTCGTTTCCA
*
14930175 TTTCTCTTATTTGCCATTTCAATAT
1 TTTCTCATATTTGCCATTTCAATAT
*
14930200 TTTCTCATCTTTGCCATTTCAATAT
1 TTTCTCATATTTGCCATTTCAATAT
14930225 CAATCACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.22, G:0.04, T:0.54
Consensus pattern (25 bp):
TTTCTCATATTTGCCATTTCAATAT
Found at i:14931330 original size:15 final size:14
Alignment explanation
Indices: 14931310--14931340 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
14931300 TTCCCCTTTC
14931310 TTCTTTCTTTCTCTT
1 TTCTTTCTTT-TCTT
14931325 TTCTTTCTTTTCTT
1 TTCTTTCTTTTCTT
14931339 TT
1 TT
14931341 AAATTTGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTCTTTCTTTTCTT
Found at i:14934039 original size:50 final size:50
Alignment explanation
Indices: 14933964--14934155 Score: 249
Period size: 50 Copynumber: 3.8 Consensus size: 50
14933954 GAAGGAAAAC
*
14933964 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGA
* *
14934014 GAGGTCCCATGTAAGACCATGTCTGGGACATGACGTTGGCACTGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGA
*** * * * *
14934064 GAGGTCCCCCATAAGACCGTGTCTGGGACATGGCATGGGCACCGATATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGA
** * *
14934114 GAACATCCCATGTAAGACCATGTCTGGGACATAGCTTTGGCA
1 G-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
14934156 TGTTATTATC
Statistics
Matches: 120, Mismatches: 21, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
50 89 0.74
51 31 0.26
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGA
Found at i:14934832 original size:12 final size:12
Alignment explanation
Indices: 14934815--14934847 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14934805 TGGCCCGCCC
14934815 ATATTAATTTTT
1 ATATTAATTTTT
14934827 ATATT-ATTTTT
1 ATATTAATTTTT
14934838 ATA-TAATTTT
1 ATATTAATTTT
14934848 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:14935017 original size:30 final size:30
Alignment explanation
Indices: 14934973--14935035 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
14934963 ACTTAACAAG
*
14934973 CAAATGCCTCTAAAATAATGACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
14935003 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
14935033 CAA
1 CAA
14935036 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:14936483 original size:24 final size:26
Alignment explanation
Indices: 14936436--14936485 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14936426 TTTAAAATAC
* *
14936436 TTTAAAAATATTTTTATTTTTTTATT
1 TTTAAAAATATTTTTATGTGTTTATT
14936462 TTTAAAAAT-TTTTT-TGTGTTTATT
1 TTTAAAAATATTTTTATGTGTTTATT
14936486 AAAAATCGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 5 0.23
26 9 0.41
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (26 bp):
TTTAAAAATATTTTTATGTGTTTATT
Found at i:14944229 original size:44 final size:43
Alignment explanation
Indices: 14944142--14944481 Score: 154
Period size: 44 Copynumber: 7.8 Consensus size: 43
14944132 GACTTGATGC
* * * *
14944142 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTT
1 AATCCGCTCCACTACAACTTCAGAGAGATAAGAT-TATGACTTT
* * *
14944186 AATCCGGTCCACTACAACTTCAGGGAGATAGGATTATCGACTTT
1 AATCCGCTCCACTACAACTTCAGAGAGATAAGATTAT-GACTTT
* * *
14944230 AATCTGCTCCACTGCAACCTCAGAGAGATAAGATT-TG-CTTCTT
1 AATCCGCTCCACTACAACTTCAGAGAGATAAGATTATGAC-T-TT
** * * *** * * * **
14944273 CGTTCTGCCCCACTGTGACTTCAGGGGGATAAGACT-TGTTTTCT
1 -AATCCGCTCCACTACAACTTCAGAGAGATAAGATTATGACTT-T
* * * * * * *
14944317 CAGTCTGCTCTACTGCAACCTCAGGGAGATAAGACCTAATG-C---
1 -AATCCGCTCCACTACAACTTCAGAGAGATAAGA--TTATGACTTT
* * * *
14944359 AATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTT
1 AATCCGCTCCACTACAACTTCAGAGAGATAAGAT-TATGACTTT
* * * * * *
14944403 AATCCGCTACACTACAACTTTAGGGAGATAGGATTATCGGCTTC
1 AATCCGCTCCACTACAACTTCAGAGAGATAAGATTAT-GACTTT
* * *
14944447 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 AATCCGCTCCACTACAACTTCAGAGAGATAAGATT
14944482 TGCCATATTC
Statistics
Matches: 225, Mismatches: 56, Indels: 30
0.72 0.18 0.10
Matches are distributed among these distances:
39 1 0.00
40 2 0.01
41 30 0.13
42 2 0.01
43 10 0.04
44 178 0.79
47 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
AATCCGCTCCACTACAACTTCAGAGAGATAAGATTATGACTTT
Found at i:14944631 original size:128 final size:127
Alignment explanation
Indices: 14944472--14945008 Score: 758
Period size: 128 Copynumber: 4.2 Consensus size: 127
14944462 AACTTCAGGG
** *
14944472 AGATAAGATTTGCCATATTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCA
1 AGATAAGATTTGCC-GCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
* ** * * **
14944537 ACCTATTCCACAACTGACCAGGGATATACGACTTGTGGCTTAAATCTGCTTTTTTACACTTGA
65 ACCTACTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
* * *
14944600 AGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATTTGTAATTTCTA
1 AGATAAGATTTGCCG-CTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
* *
14944665 ACCTACTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATTTACTTCCTTACACTTGA
65 ACCTACTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
*
14944728 AGATAAGATTTGCCGCTTTCGATCTACTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
1 AGATAAGATTTGCCGC-TTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
* * * *
14944793 A-CT--T-CATTGCTGACCAGGGACATAGGACTTGAGGCTTAAATTTGCTTTCTTACACTTGA
65 ACCTACTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
* * *
14944852 AGATAAGATTTGCCGCTTTCGATCTACTCCGTTACCGCTTAGGGAGACAAGATCTGTAATTTCCA
1 AGATAAGATTTGCCGC-TTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
* * *
14944917 ACCTACTCCACTGCTAACCAGGGACATAGGACTTGTAGCTTGAATCTGCTTCCTTACACTTGA
65 ACCTACTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
*
14944980 AGATAAGATTTGTCGCTTCCGATCTGCTC
1 AGATAAGATTTGCCGCTT-CGATCTGCTC
14945009 TGTAATTTCC
Statistics
Matches: 368, Mismatches: 34, Indels: 14
0.88 0.08 0.03
Matches are distributed among these distances:
124 115 0.31
125 3 0.01
127 6 0.02
128 244 0.66
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (127 bp):
AGATAAGATTTGCCGCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAA
CCTACTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
Found at i:14944922 original size:252 final size:255
Alignment explanation
Indices: 14944472--14945004 Score: 788
Period size: 252 Copynumber: 2.1 Consensus size: 255
14944462 AACTTCAGGG
* * *
14944472 AGATAAGATTTGCC-ATATTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCC
1 AGATAAGATTTGCCGCT-TTCGATCTACTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCC
* * *
14944536 AACCTATTCCACAACTGACCAGGGATATACGACTTGTGGCTTAAATCTGCTTTTTTACACTTGAA
65 AACC-ATTCCACAACTGACCAGGGACATACGACTTGAGGCTTAAATCTGCTTTCTTACACTTGAA
* * * *
14944601 GATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATTTGTAATTTCTAA
129 GATAAGATTCGCCGTCTTCGATCTACTCCGCTACCGCTTAGGGAGACAAGATCTGTAATTTCCAA
* * *
14944666 CCTACTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATTTACTTCCTTACACTTGA
194 CCTACTCCACTGCTAACCAGGGACATAGGACTTGTAGCTTAAATCTACTTCCTTACACTTGA
14944728 AGATAAGATTTGCCGCTTTCGATCTACTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
1 AGATAAGATTTGCCGCTTTCGATCTACTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
*** * *
14944793 A-C-TT-CATTGCTGACCAGGGACATAGGACTTGAGGCTTAAATTTGCTTTCTTACACTTGAAGA
66 ACCATTCCACAACTGACCAGGGACATACGACTTGAGGCTTAAATCTGCTTTCTTACACTTGAAGA
* *
14944855 TAAGATTTGCCG-CTTTCGATCTACTCCGTTACCGCTTAGGGAGACAAGATCTGTAATTTCCAAC
131 TAAGATTCGCCGTC-TTCGATCTACTCCGCTACCGCTTAGGGAGACAAGATCTGTAATTTCCAAC
* *
14944919 CTACTCCACTGCTAACCAGGGACATAGGACTTGTAGCTTGAATCTGCTTCCTTACACTTGA
195 CTACTCCACTGCTAACCAGGGACATAGGACTTGTAGCTTAAATCTACTTCCTTACACTTGA
* *
14944980 AGATAAGATTTGTCGCTTCCGATCT
1 AGATAAGATTTGCCGCTTTCGATCT
14945005 GCTCTGTAAT
Statistics
Matches: 251, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
251 1 0.00
252 185 0.74
253 2 0.01
255 1 0.00
256 61 0.24
257 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (255 bp):
AGATAAGATTTGCCGCTTTCGATCTACTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCA
ACCATTCCACAACTGACCAGGGACATACGACTTGAGGCTTAAATCTGCTTTCTTACACTTGAAGA
TAAGATTCGCCGTCTTCGATCTACTCCGCTACCGCTTAGGGAGACAAGATCTGTAATTTCCAACC
TACTCCACTGCTAACCAGGGACATAGGACTTGTAGCTTAAATCTACTTCCTTACACTTGA
Found at i:14945083 original size:103 final size:103
Alignment explanation
Indices: 14944904--14945092 Score: 351
Period size: 103 Copynumber: 1.8 Consensus size: 103
14944894 GGAGACAAGA
*
14944904 TCTGTAATTTCCAACCTACTCCACTGCTAACCAGGGACATAGGACTTGTAGCTTGAATCTGCTTC
1 TCTGTAATTTCCAACCTACTCCACTACTAACCAGGGACATAGGACTTGTAGCTTGAATCTGCTTC
14944969 CTTACACTTGAAGATAAGATTTGTCGCTTCCGATCTGC
66 CTTACACTTGAAGATAAGATTTGTCGCTTCCGATCTGC
*
14945007 TCTGTAATTTCCAACCTACTCCACTACTAACCAGGGACATAGGACTTGTGGCTTGAATCTGCTTC
1 TCTGTAATTTCCAACCTACTCCACTACTAACCAGGGACATAGGACTTGTAGCTTGAATCTGCTTC
*
14945072 CTTACACTTGAAGGTAAGATT
66 CTTACACTTGAAGATAAGATT
14945093 CACCGTCTTT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 83 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (103 bp):
TCTGTAATTTCCAACCTACTCCACTACTAACCAGGGACATAGGACTTGTAGCTTGAATCTGCTTC
CTTACACTTGAAGATAAGATTTGTCGCTTCCGATCTGC
Found at i:14946475 original size:7 final size:7
Alignment explanation
Indices: 14946456--14946519 Score: 87
Period size: 7 Copynumber: 9.0 Consensus size: 7
14946446 TTAGCCTCTC
14946456 CATTTTT
1 CATTTTT
14946463 -ACTTTTT
1 CA-TTTTT
14946470 CATTTTTT
1 CA-TTTTT
14946478 CATTTTT
1 CATTTTT
14946485 CATTTTT
1 CATTTTT
14946492 CA-TTTT
1 CATTTTT
14946498 CATTTTT
1 CATTTTT
14946505 CATTTTT
1 CATTTTT
14946512 CATATTTT
1 CAT-TTTT
14946520 TTTGACTTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
6 7 0.13
7 33 0.63
8 12 0.23
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:14946490 original size:13 final size:13
Alignment explanation
Indices: 14946456--14946510 Score: 74
Period size: 13 Copynumber: 4.0 Consensus size: 13
14946446 TTAGCCTCTC
*
14946456 CATTTTTACTTTTT
1 CATTTTT-CATTTT
14946470 CATTTTTTCATTTTT
1 CA-TTTTTCA-TTTT
14946485 CATTTTTCATTTT
1 CATTTTTCATTTT
14946498 CATTTTTCATTTT
1 CATTTTTCATTTT
14946511 TCATATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
13 17 0.45
14 10 0.26
15 11 0.29
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:14946499 original size:20 final size:20
Alignment explanation
Indices: 14946456--14946514 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 20
14946446 TTAGCCTCTC
14946456 CATTTTT-ACTTTTTCATTTTTT
1 CATTTTTCA-TTTTTCA--TTTT
14946478 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTTT
14946498 CATTTTTCATTTTTCAT
1 CATTTTTCATTTTTCAT
14946515 ATTTTTTTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 21 0.58
22 14 0.39
23 1 0.03
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (20 bp):
CATTTTTCATTTTTCATTTT
Found at i:14947420 original size:6 final size:6
Alignment explanation
Indices: 14947392--14947437 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
14947382 CTTCTCTCTT
* * * *
14947392 TTTTCA TTTTCA TTTTGG CTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
14947438 TCTTTTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67
Consensus pattern (6 bp):
TTTTGA
Found at i:14947453 original size:16 final size:17
Alignment explanation
Indices: 14947428--14947465 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
14947418 TTGATTTTGA
14947428 TTTTGATTTT-TCTTTT
1 TTTTGATTTTATCTTTT
*
14947444 TTTTGTTTTTGATCTTTT
1 TTTTGATTTT-ATCTTTT
14947462 TTTT
1 TTTT
14947466 TGGATTGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
18 10 0.53
ACGTcount: A:0.05, C:0.05, G:0.08, T:0.82
Consensus pattern (17 bp):
TTTTGATTTTATCTTTT
Found at i:14947453 original size:22 final size:21
Alignment explanation
Indices: 14947422--14947466 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
14947412 TTGATTTTGA
*
14947422 TTTTGATTTTGATTTTTCTTTT
1 TTTTGATTTTGATCTTT-TTTT
*
14947444 TTTTGTTTTTGATCTTTTTTT
1 TTTTGATTTTGATCTTTTTTT
14947465 TT
1 TT
14947467 GGATTGGATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.07, C:0.04, G:0.09, T:0.80
Consensus pattern (21 bp):
TTTTGATTTTGATCTTTTTTT
Found at i:14961639 original size:3 final size:3
Alignment explanation
Indices: 14961631--14961655 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14961621 TCGTTGCATC
14961631 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
14961656 TGTAGTGTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:14964395 original size:3 final size:3
Alignment explanation
Indices: 14964387--14964437 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
14964377 AGTCCCCATT
*
14964387 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14964435 TTA
1 TTA
14964438 CTACTACTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:14964646 original size:12 final size:12
Alignment explanation
Indices: 14964629--14964657 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14964619 TATGCATACC
14964629 TACATATTTTAA
1 TACATATTTTAA
14964641 TACATATTTTAA
1 TACATATTTTAA
14964653 TACAT
1 TACAT
14964658 TCATTTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (12 bp):
TACATATTTTAA
Found at i:14965300 original size:110 final size:110
Alignment explanation
Indices: 14965107--14965398 Score: 566
Period size: 110 Copynumber: 2.7 Consensus size: 110
14965097 GGAAATTGAG
* *
14965107 CCCTAACGTATTGAGTTCTGATTTTCTTTGTCAATCTTAAAAGGCCGAGAATATTCTTTATTCAA
1 CCCTAACGCATTGGGTTCTGATTTTCTTTGTCAATCTTAAAAGGCCGAGAATATTCTTTATTCAA
14965172 AATGCATAAGTATAAAAATCATTTTTGGGAACTTAACTTGTTGCA
66 AATGCATAAGTATAAAAATCATTTTTGGGAACTTAACTTGTTGCA
14965217 CCCTAACGCATTGGGTTCTGATTTTCTTTGTCAATCTTAAAAGGCCGAGAATATTCTTTATTCAA
1 CCCTAACGCATTGGGTTCTGATTTTCTTTGTCAATCTTAAAAGGCCGAGAATATTCTTTATTCAA
14965282 AATGCATAAGTATAAAAATCATTTTTGGGAACTTAACTTGTTGCA
66 AATGCATAAGTATAAAAATCATTTTTGGGAACTTAACTTGTTGCA
14965327 CCCTAACGCATTGGGTTCTGATTTTCTTTGTCAATCTTAAAAGGCCGAGAATATTCTTTATTCAA
1 CCCTAACGCATTGGGTTCTGATTTTCTTTGTCAATCTTAAAAGGCCGAGAATATTCTTTATTCAA
14965392 AATGCAT
66 AATGCAT
14965399 GATTTTCGCA
Statistics
Matches: 180, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 180 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (110 bp):
CCCTAACGCATTGGGTTCTGATTTTCTTTGTCAATCTTAAAAGGCCGAGAATATTCTTTATTCAA
AATGCATAAGTATAAAAATCATTTTTGGGAACTTAACTTGTTGCA
Found at i:14966162 original size:39 final size:41
Alignment explanation
Indices: 14966061--14966164 Score: 99
Period size: 44 Copynumber: 2.5 Consensus size: 41
14966051 GGTTCGCTGT
*
14966061 AATGGAATAGA-GGTGTAATAGTAATTCAATTGTTTGGTTG
1 AATGGAATAGATGCTGTAATAGTAATTCAATTGTTTGGTTG
* *
14966101 AATGGAATGGAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTG
1 AATGGAATAG-AT-G--CTGTAATAGTAATTCAAT-TGTTTGGTTG
*
14966145 AATGGAAT-GATGTTGTAATA
1 AATGGAATAGATGCTGTAATA
14966165 ACATAAGGAA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
39 7 0.13
40 9 0.17
41 2 0.04
42 2 0.04
43 3 0.06
44 22 0.41
45 9 0.17
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.38
Consensus pattern (41 bp):
AATGGAATAGATGCTGTAATAGTAATTCAATTGTTTGGTTG
Found at i:14966470 original size:59 final size:59
Alignment explanation
Indices: 14966275--14966472 Score: 185
Period size: 59 Copynumber: 3.4 Consensus size: 59
14966265 TATTAATATA
* * *
14966275 AATAATAAATAATTTAAT--CATAT--TTTAACATAATTATTATTAAATATAATTTAAT
1 AATAATATATAATTTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
* * * * * * **
14966330 AAAAATATATAATTTAATAAAATTCTTAATATT-AAAT-ATTCTTATATGAATTTACTAAAAT
1 AATAATATATAATTTAATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAAT
* *
14966391 CATAATATATAATACT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
1 AATAATATATAAT-TTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
14966450 AATAATATATAATTTAATAAAAT
1 AATAATATATAATTTAATAAAAT
14966473 TCAATATAAT
Statistics
Matches: 108, Mismatches: 23, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
55 16 0.15
57 1 0.01
58 4 0.04
59 38 0.35
60 15 0.14
61 31 0.29
62 3 0.03
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.43
Consensus pattern (59 bp):
AATAATATATAATTTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
Found at i:14966553 original size:117 final size:119
Alignment explanation
Indices: 14966304--14966538 Score: 384
Period size: 117 Copynumber: 2.0 Consensus size: 119
14966294 ATATTTTAAC
*
14966304 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
1 ATAACTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC-TAATATTAAATAT
* *
14966369 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAA
65 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAAATAATGTAAA
* * *
14966424 ATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTC-AATA-TAATTATT
1 ATAACTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTAATATTAAATATT
*
14966487 CTTATATGAATTTACTAAAGTCATAATATATAATACTATAAAAAATAATGTA
66 CTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAAATAATGTA
14966539 TAATCTACTT
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
117 56 0.51
118 4 0.04
120 50 0.45
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (119 bp):
ATAACTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTAATATTAAATATT
CTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAAATAATGTAAA
Found at i:14966555 original size:120 final size:119
Alignment explanation
Indices: 14966298--14966535 Score: 408
Period size: 120 Copynumber: 2.0 Consensus size: 119
14966288 TTAATCATAT
*
14966298 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC-TAATATT
*
14966363 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAAATAA
*
14966418 TTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTC-AATA-TA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTAATATTA
* *
14966481 ATTATTCTTATATGAATTTACTAAAGTCATAATATATAATACTATAAAAAATAA
66 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAAATAA
14966535 T
1 T
14966536 GTATAATCTA
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
117 54 0.48
118 4 0.04
120 55 0.49
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (119 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTAATATTA
AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAAATAA
Found at i:14967997 original size:49 final size:49
Alignment explanation
Indices: 14967925--14968028 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
14967915 AGAAAAAAAC
* * *
14967925 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
14967974 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
*
14968023 ATATTA
1 AAATTA
14968029 TAACACATGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.33
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
Found at i:14977936 original size:87 final size:88
Alignment explanation
Indices: 14977761--14977936 Score: 309
Period size: 87 Copynumber: 2.0 Consensus size: 88
14977751 AGCGCTATCG
*
14977761 TGCGTTGAGAAAAATTCCTAACCATCAATGCAAATGCTCTTTTTTTTTTAGTCTACCATCTTCAG
1 TGCGTTGAGAAAAATTCCTAACCATCAATGCAAATGCTCTATTTTTTTTAGTCTACCATCTTCAG
14977826 TTCGATTAGAATGGGTGAGAAGA
66 TTCGATTAGAATGGGTGAGAAGA
* *
14977849 TGCGTTGAGCAAAATTCCTAACCATCAATGCAAATGCTC-ATTTTTTTTAGTCTACCTTCTTCAG
1 TGCGTTGAGAAAAATTCCTAACCATCAATGCAAATGCTCTATTTTTTTTAGTCTACCATCTTCAG
*
14977913 TTCGATTGGAATGGGTGAGAAGA
66 TTCGATTAGAATGGGTGAGAAGA
14977936 T
1 T
14977937 TTCTTTTTGA
Statistics
Matches: 84, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
87 46 0.55
88 38 0.45
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (88 bp):
TGCGTTGAGAAAAATTCCTAACCATCAATGCAAATGCTCTATTTTTTTTAGTCTACCATCTTCAG
TTCGATTAGAATGGGTGAGAAGA
Found at i:14979663 original size:16 final size:16
Alignment explanation
Indices: 14979639--14979689 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
14979629 TGAATTACTA
14979639 ATTATAGCTCTATTCC
1 ATTATAGCTCTATTCC
* * *
14979655 ATTACAGCTTTATTAC
1 ATTATAGCTCTATTCC
*
14979671 ATTATAACTCTATTCC
1 ATTATAGCTCTATTCC
14979687 ATT
1 ATT
14979690 CTCCCTAACC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.45
Consensus pattern (16 bp):
ATTATAGCTCTATTCC
Found at i:14979757 original size:16 final size:16
Alignment explanation
Indices: 14979733--14979768 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14979723 TGGTTCACTA
* *
14979733 TAATGGAATAGAGTTG
1 TAATAGAATAGAGCTG
14979749 TAATAGAATAGAGCTG
1 TAATAGAATAGAGCTG
14979765 TAAT
1 TAAT
14979769 CAGTAATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (16 bp):
TAATAGAATAGAGCTG
Found at i:14979968 original size:14 final size:14
Alignment explanation
Indices: 14979949--14979977 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14979939 GGATTATTAT
14979949 TAAAAATAATTTAA
1 TAAAAATAATTTAA
14979963 TAAAAATAATTTAA
1 TAAAAATAATTTAA
14979977 T
1 T
14979978 CATATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAAAATAATTTAA
Found at i:14980380 original size:26 final size:27
Alignment explanation
Indices: 14980344--14980407 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
14980334 GGCCGGGCCC
* * *
14980344 ATTTTTAAAAT-AAATATTAAAAAATT
1 ATTTTAAAAATAAAAAATAAAAAAATT
14980370 ATTTTAAAAATAAAAAAAATAAAAAAATT
1 ATTTTAAAAAT--AAAAAATAAAAAAATT
14980399 ATTTTAAAA
1 ATTTTAAAA
14980408 GTATTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 10 0.31
29 22 0.69
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (27 bp):
ATTTTAAAAATAAAAAATAAAAAAATT
Found at i:14991993 original size:11 final size:11
Alignment explanation
Indices: 14991977--14992007 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
14991967 AAGTATGGGT
14991977 AGGTATGGGAA
1 AGGTATGGGAA
*
14991988 AGGTATGGGCA
1 AGGTATGGGAA
14991999 AGGTATGGG
1 AGGTATGGG
14992008 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:14995425 original size:11 final size:11
Alignment explanation
Indices: 14995398--14995440 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
14995388 TGACCTTTTC
14995398 AAGGTATGGG-
1 AAGGTATGGGA
*
14995408 TAGGTATGGGA
1 AAGGTATGGGA
*
14995419 AAGGTATGGGC
1 AAGGTATGGGA
14995430 AAGGTATGGGA
1 AAGGTATGGGA
14995441 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:14995437 original size:22 final size:21
Alignment explanation
Indices: 14995398--14995440 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14995388 TGACCTTTTC
*
14995398 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
14995419 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
14995441 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:15005399 original size:17 final size:18
Alignment explanation
Indices: 15005330--15005399 Score: 54
Period size: 20 Copynumber: 3.8 Consensus size: 18
15005320 AAAAATTAAA
15005330 AAAAATATTCTTTAAAAAAT
1 AAAAATA-T-TTTAAAAAAT
*
15005350 AAAAAAATTTATGAAAAAAT
1 AAAAATATTT-T-AAAAAAT
* * *
15005370 AAAACT-CTGT-AAAAAT
1 AAAAATATTTTAAAAAAT
15005386 AAAAATATTTTAAA
1 AAAAATATTTTAAA
15005400 TATATAAACA
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
16 11 0.29
17 2 0.05
18 5 0.13
19 3 0.08
20 17 0.45
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (18 bp):
AAAAATATTTTAAAAAAT
Found at i:15005878 original size:31 final size:31
Alignment explanation
Indices: 15005829--15005902 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
15005819 ATTTAAACAA
* * *
15005829 AAAACATAAAAATTTAAAAATTATAATT-TTT
1 AAAATATAAAAA-TTAAAAATAAAAATTCTTT
15005860 AAAATATATAAAATTAAAAATAAAAATTCTTT
1 AAAATATA-AAAATTAAAAATAAAAATTCTTT
15005892 AAAAT-TAAAAA
1 AAAATATAAAAA
15005903 AATAAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
30 4 0.11
31 22 0.58
32 12 0.32
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAATATAAAAATTAAAAATAAAAATTCTTT
Found at i:15017146 original size:24 final size:25
Alignment explanation
Indices: 15017113--15017167 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
15017103 AACTGAAATA
*
15017113 AAAATTTAAAACCTAGA-AAAAGAG
1 AAAATCTAAAACCTAGACAAAAGAG
* *
15017137 AAAATCTAAAGCCTAGATCGAAAGAG
1 AAAATCTAAAACCTAGA-CAAAAGAG
15017163 AAAAT
1 AAAAT
15017168 TATACATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 15 0.58
26 11 0.42
ACGTcount: A:0.58, C:0.11, G:0.15, T:0.16
Consensus pattern (25 bp):
AAAATCTAAAACCTAGACAAAAGAG
Found at i:15020621 original size:23 final size:23
Alignment explanation
Indices: 15020595--15020640 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
15020585 ACAAACAACA
*
15020595 AATAATTTACTATTACTCCTACT
1 AATAATCTACTATTACTCCTACT
15020618 AATAATCTACTATTACTCCTACT
1 AATAATCTACTATTACTCCTACT
15020641 TCTAACAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (23 bp):
AATAATCTACTATTACTCCTACT
Found at i:15021938 original size:24 final size:24
Alignment explanation
Indices: 15021908--15021955 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
15021898 GGTAAGCACT
15021908 TTGTGCTTAGTAAGCTCGTGTAAC
1 TTGTGCTTAGTAAGCTCGTGTAAC
*
15021932 TTGTGCTTAGTAAGCTTGTGTAAC
1 TTGTGCTTAGTAAGCTCGTGTAAC
15021956 AAGAATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.40
Consensus pattern (24 bp):
TTGTGCTTAGTAAGCTCGTGTAAC
Found at i:15025162 original size:17 final size:16
Alignment explanation
Indices: 15025130--15025169 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
15025120 ACAAAAGAAG
15025130 ATTTAG-GTTCTAAAA
1 ATTTAGAGTTCTAAAA
*
15025145 AGTTTAGAGTTTTAAAA
1 A-TTTAGAGTTCTAAAA
15025162 ATTTAGAG
1 ATTTAGAG
15025170 GATTTTGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 12 0.55
17 9 0.41
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (16 bp):
ATTTAGAGTTCTAAAA
Found at i:15033744 original size:22 final size:22
Alignment explanation
Indices: 15033718--15033772 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
15033708 TACATAGGTG
15033718 ATGTCGAGACACACCAGGTCCT
1 ATGTCGAGACACACCAGGTCCT
*
15033740 GTGTC-ATGACACACCAGGTCCT
1 ATGTCGA-GACACACCAGGTCCT
*
15033762 ATGTCGCGACA
1 ATGTCGAGACA
15033773 TCGATGGCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (22 bp):
ATGTCGAGACACACCAGGTCCT
Found at i:15037061 original size:18 final size:17
Alignment explanation
Indices: 15037038--15037072 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
15037028 TAAGATACTT
15037038 TTTTAAAAAAATTTTTAA
1 TTTT-AAAAAATTTTTAA
*
15037056 TTTTAAAATATTTTTAA
1 TTTTAAAAAATTTTTAA
15037073 AATACTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTAAAAAATTTTTAA
Found at i:15037084 original size:31 final size:31
Alignment explanation
Indices: 15037049--15037107 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
15037039 TTTAAAAAAA
15037049 TTTTTAA-TTTTAAAATATTTTTAAAATACTT
1 TTTTTAATTTTTAAAA-ATTTTTAAAATACTT
*
15037080 TTTTTAATTTTTTAAAATTTTTAAAATA
1 TTTTTAATTTTTAAAAATTTTTAAAATA
15037108 AAAATGGGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 19 0.73
32 7 0.27
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (31 bp):
TTTTTAATTTTTAAAAATTTTTAAAATACTT
Found at i:15040429 original size:19 final size:19
Alignment explanation
Indices: 15040407--15040476 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
15040397 CTTCTATATA
*
15040407 TTTTATAATCTTTTACTAT
1 TTTTATAATCTTTTACAAT
**
15040426 TTTTATAAAATTTTACAAT
1 TTTTATAATCTTTTACAAT
* * *
15040445 TTTTATATTTTTTTACGA-
1 TTTTATAATCTTTTACAAT
15040463 TTTTATAATCTTTT
1 TTTTATAATCTTTT
15040477 TCTAATTATT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
18 12 0.29
19 30 0.71
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTTATAATCTTTTACAAT
Found at i:15040534 original size:19 final size:19
Alignment explanation
Indices: 15040501--15040566 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
15040491 AAAATTAAAT
15040501 ATTTCTTATATTTTTTATTA
1 ATTT-TTATATTTTTTATTA
* * *
15040521 AATTTTATAATTTTTATTG
1 ATTTTTATATTTTTTATTA
* *
15040540 ATTTTTATTTTTTTTATCA
1 ATTTTTATATTTTTTATTA
15040559 ATTTTTAT
1 ATTTTTAT
15040567 CACATGTCAC
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 35 0.92
20 3 0.08
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.70
Consensus pattern (19 bp):
ATTTTTATATTTTTTATTA
Found at i:15040568 original size:10 final size:9
Alignment explanation
Indices: 15040407--15040566 Score: 56
Period size: 10 Copynumber: 16.7 Consensus size: 9
15040397 CTTCTATATA
15040407 TTTTATAAT
1 TTTTATAAT
15040416 CTTTTACT-AT
1 -TTTTA-TAAT
*
15040426 TTTTATAAAA
1 TTTTAT-AAT
*
15040436 TTTTACAAT
1 TTTTATAAT
15040445 TTTTAT-AT
1 TTTTATAAT
*
15040453 TTTTTTACGA-
1 TTTTATA--AT
15040463 TTTTATAATCT
1 TTTTATAA--T
*
15040474 TTTTCTAAT
1 TTTTATAAT
* *
15040483 TATTAATAAA
1 T-TTTATAAT
** *
15040493 AATTAAATAT
1 TTTTATA-AT
*
15040503 TTCTTATATT
1 TT-TTATAAT
*
15040513 TTTTATTAAA
1 TTTTA-TAAT
15040523 TTTTATAAT
1 TTTTATAAT
*
15040532 TTTTATTGAT
1 TTTTA-TAAT
**
15040542 TTTTATTTT
1 TTTTATAAT
15040551 TTTTATCAAT
1 TTTTAT-AAT
15040561 TTTTAT
1 TTTTAT
15040567 CACATGTCAC
Statistics
Matches: 108, Mismatches: 27, Indels: 30
0.65 0.16 0.18
Matches are distributed among these distances:
8 9 0.08
9 36 0.33
10 50 0.46
11 13 0.12
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:15043368 original size:15 final size:15
Alignment explanation
Indices: 15043350--15043414 Score: 60
Period size: 15 Copynumber: 4.1 Consensus size: 15
15043340 TAATTTTTTG
15043350 AAAATTAATTTTACAAA
1 AAAATTAATTTT--AAA
*
15043367 AATAATT-ATTTGAAA
1 AA-AATTAATTTTAAA
*
15043382 AAAATTATTTTTAAA
1 AAAATTAATTTTAAA
*
15043397 AAAATTATTTTTTAAA
1 AAAATTA-ATTTTAAA
15043413 AA
1 AA
15043415 GTAAATAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
14 4 0.10
15 18 0.43
16 10 0.24
17 6 0.14
18 4 0.10
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AAAATTAATTTTAAA
Found at i:15043373 original size:29 final size:29
Alignment explanation
Indices: 15043340--15043414 Score: 78
Period size: 32 Copynumber: 2.5 Consensus size: 29
15043330 CCAATTCGAC
*
15043340 TAATTTTTTGAAAATTAATTTTACAAAAA
1 TAATTTTTTGAAAATTAATTTTAAAAAAA
* *
15043369 TAATTATTTGAAAAAAATTATTTTTAAAAAAA
1 TAATTTTTTG---AAAATTAATTTTAAAAAAA
* *
15043401 TTATTTTTTAAAAA
1 TAATTTTTTGAAAA
15043415 GTAAATAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
29 13 0.35
32 24 0.65
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (29 bp):
TAATTTTTTGAAAATTAATTTTAAAAAAA
Found at i:15043394 original size:32 final size:31
Alignment explanation
Indices: 15043350--15043414 Score: 85
Period size: 32 Copynumber: 2.1 Consensus size: 31
15043340 TAATTTTTTG
*
15043350 AAAATTAATTTTACAAAAATAATTATTTGAAA
1 AAAATTAATTTTAAAAAAATAATT-TTTGAAA
* * *
15043382 AAAATTATTTTTAAAAAAATTATTTTTTAAA
1 AAAATTAATTTTAAAAAAATAATTTTTGAAA
15043413 AA
1 AA
15043415 GTAAATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 8 0.28
32 21 0.72
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (31 bp):
AAAATTAATTTTAAAAAAATAATTTTTGAAA
Found at i:15043407 original size:14 final size:14
Alignment explanation
Indices: 15043350--15043407 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 14
15043340 TAATTTTTTG
15043350 AAAATTAATTTTACAAA
1 AAAATT-ATTTT--AAA
*
15043367 AATAATTATTTGAAA
1 AA-AATTATTTTAAA
15043382 AAAATTATTTTTAAA
1 AAAATTA-TTTTAAA
15043397 AAAATTATTTT
1 AAAATTATTTT
15043408 TTAAAAAGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
14 9 0.24
15 18 0.49
17 6 0.16
18 4 0.11
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (14 bp):
AAAATTATTTTAAA
Found at i:15048208 original size:18 final size:18
Alignment explanation
Indices: 15048187--15048253 Score: 89
Period size: 18 Copynumber: 3.6 Consensus size: 18
15048177 TAAAAATTAT
*
15048187 AAAAAATTTTATTTTTTA
1 AAAAAATTATATTTTTTA
15048205 AAAAAATTATATTTTTTTA
1 AAAAAATTATA-TTTTTTA
*
15048224 TTAAAAATTATATTTTTTA
1 -AAAAAATTATATTTTTTA
*
15048243 AAAATATTATA
1 AAAAAATTATA
15048254 AATTTTTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.44
19 14 0.33
20 10 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
AAAAAATTATATTTTTTA
Found at i:15048230 original size:38 final size:38
Alignment explanation
Indices: 15048165--15048268 Score: 129
Period size: 38 Copynumber: 2.8 Consensus size: 38
15048155 AAAAATTATA
* ** * *
15048165 TTAAAAAAATCATAAA-AATTATAAAAAATTTTATTTT
1 TTAAAAAAATTATAAATTTTTATTAAAAATTATATTTT
**
15048202 TTAAAAAAATTATATTTTTTTATTAAAAATTATATTTT
1 TTAAAAAAATTATAAATTTTTATTAAAAATTATATTTT
*
15048240 TTAAAAATATTATAAATTTTTATTAAAAA
1 TTAAAAAAATTATAAATTTTTATTAAAAA
15048269 ATATCAATAC
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
37 13 0.23
38 43 0.77
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (38 bp):
TTAAAAAAATTATAAATTTTTATTAAAAATTATATTTT
Found at i:15048258 original size:20 final size:18
Alignment explanation
Indices: 15048186--15048261 Score: 75
Period size: 19 Copynumber: 4.1 Consensus size: 18
15048176 ATAAAAATTA
*
15048186 TAAAAAATT-TTATTTTT
1 TAAAAAATTATAATTTTT
*
15048203 TAAAAAAATTATATTTTTT
1 T-AAAAAATTATAATTTTT
15048222 TATTAAAAATTAT-ATTTTT
1 TA--AAAAATTATAATTTTT
*
15048241 TAAAAATATTATAAATTTT
1 TAAAAA-ATTATAATTTTT
15048260 TA
1 TA
15048262 TTAAAAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
17 5 0.10
18 14 0.29
19 21 0.43
20 9 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAAAAAATTATAATTTTT
Found at i:15053985 original size:25 final size:25
Alignment explanation
Indices: 15053957--15054015 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
15053947 TTACCCCCAA
*
15053957 TAAAATTTGACAATTTTACCCTTGG
1 TAAAATTTGACAATTTTACCATTGG
** * *
15053982 TAAAATCTTGATGATTTTTCTATTGG
1 TAAAAT-TTGACAATTTTACCATTGG
15054008 TAAAATTT
1 TAAAATTT
15054016 CAAGAAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (25 bp):
TAAAATTTGACAATTTTACCATTGG
Found at i:15058976 original size:26 final size:26
Alignment explanation
Indices: 15058947--15059008 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
15058937 TATCCCCAAC
*
15058947 AAAATTTTGACAATTTTACCCTTGAT
1 AAAATTTTGACAATTTTACCCCTGAT
* * * *
15058973 AAAATTTTAACGATTTTGCCCCTGGT
1 AAAATTTTGACAATTTTACCCCTGAT
15058999 AAAATTTTGA
1 AAAATTTTGA
15059009 GAAAATATGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (26 bp):
AAAATTTTGACAATTTTACCCCTGAT
Found at i:15060140 original size:31 final size:30
Alignment explanation
Indices: 15060105--15060169 Score: 89
Period size: 28 Copynumber: 2.2 Consensus size: 30
15060095 TTATTTAATA
15060105 CATTAAAGAAAGTGAGTTTATGATAATTATT
1 CATTAAA-AAAGTGAGTTTATGATAATTATT
* *
15060136 CATT--AATATTGAGTTTATGATAATTATT
1 CATTAAAAAAGTGAGTTTATGATAATTATT
15060164 CATTAA
1 CATTAA
15060170 TATTAAATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 25 0.83
29 1 0.03
31 4 0.13
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (30 bp):
CATTAAAAAAGTGAGTTTATGATAATTATT
Found at i:15060148 original size:28 final size:28
Alignment explanation
Indices: 15060117--15060173 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
15060107 TTAAAGAAAG
15060117 TGAGTTTATGATAATTATTCATTAATAT
1 TGAGTTTATGATAATTATTCATTAATAT
15060145 TGAGTTTATGATAATTATTCATTAATAT
1 TGAGTTTATGATAATTATTCATTAATAT
15060173 T
1 T
15060174 AAATGTCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.51
Consensus pattern (28 bp):
TGAGTTTATGATAATTATTCATTAATAT
Found at i:15060997 original size:30 final size:29
Alignment explanation
Indices: 15060954--15061035 Score: 119
Period size: 30 Copynumber: 2.8 Consensus size: 29
15060944 TAGGGTCTAG
* *
15060954 GGGTTCTAAAAAAATAATATTGATGAGTT
1 GGGTTCTAAAAAAATAATTTTGATGAGAT
*
15060983 GGGTTCTGAAAAAAATAATTTTTATGAGAT
1 GGGTTCT-AAAAAAATAATTTTGATGAGAT
*
15061013 GGGTTCTAAAGAAATAATTTTGA
1 GGGTTCTAAAAAAATAATTTTGA
15061036 AGAAAAAACA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 21 0.45
30 26 0.55
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (29 bp):
GGGTTCTAAAAAAATAATTTTGATGAGAT
Found at i:15067479 original size:25 final size:25
Alignment explanation
Indices: 15067451--15067519 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
15067441 GAGCTTTTCA
15067451 TTATACAGCTCACATGAGCTTCCCG-
1 TTATA-AGCTCACATGAGCTTCCCGT
* *
15067476 TTATATGGCTCGA-AAGAGCTTCCCGT
1 TTATA-AGCTC-ACATGAGCTTCCCGT
*
15067502 TTATATGCTCACATGAGC
1 TTATAAGCTCACATGAGC
15067520 ATTTTTAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
24 1 0.03
25 29 0.81
26 6 0.17
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (25 bp):
TTATAAGCTCACATGAGCTTCCCGT
Found at i:15067710 original size:62 final size:62
Alignment explanation
Indices: 15067639--15067768 Score: 260
Period size: 62 Copynumber: 2.1 Consensus size: 62
15067629 TAGGAGTACG
15067639 AAATGAATTATTACCCGTATAAGCCTGAAATACATGAAAATGATGTTACTTGACATATTGAA
1 AAATGAATTATTACCCGTATAAGCCTGAAATACATGAAAATGATGTTACTTGACATATTGAA
15067701 AAATGAATTATTACCCGTATAAGCCTGAAATACATGAAAATGATGTTACTTGACATATTGAA
1 AAATGAATTATTACCCGTATAAGCCTGAAATACATGAAAATGATGTTACTTGACATATTGAA
15067763 AAATGA
1 AAATGA
15067769 GATGAAAGAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 68 1.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (62 bp):
AAATGAATTATTACCCGTATAAGCCTGAAATACATGAAAATGATGTTACTTGACATATTGAA
Found at i:15072528 original size:19 final size:18
Alignment explanation
Indices: 15072486--15072521 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
15072476 CGAATTGTAT
*
15072486 ATTTTTTCTCTTATTTTC
1 ATTTTTTCTATTATTTTC
15072504 ATTTTTATCTATTATTTT
1 ATTTTT-TCTATTATTTT
15072522 GTTTTTTCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTTTTCTATTATTTTC
Found at i:15073351 original size:18 final size:18
Alignment explanation
Indices: 15073311--15073351 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
15073301 ATTAGTTTAA
* *
15073311 TATTTTCATTATTATTAT
1 TATTATCATTATCATTAT
15073329 TATTATCATTATCATTAT
1 TATTATCATTATCATTAT
15073347 TATTA
1 TATTA
15073352 CTACTACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTATCATTATCATTAT
Found at i:15073370 original size:3 final size:3
Alignment explanation
Indices: 15073286--15073351 Score: 55
Period size: 3 Copynumber: 22.0 Consensus size: 3
15073276 CCTTTTTGTG
* * *
15073286 TTA TTT TTA TTA TTAA TTA GT- TTA ATA TT- TTCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
* *
15073331 TTA TCA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
15073352 CTACTACTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
2 3 0.06
3 41 0.84
4 5 0.10
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:15077956 original size:25 final size:25
Alignment explanation
Indices: 15077934--15077990 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
15077924 ATTGGCTCGT
15077934 AAGAGCTTCCCGTTATACAGCTCAC
1 AAGAGCTTCCCGTTATACAGCTCAC
* * ** *
15077959 ATGAGTTTCCCGTTATATGGCTCAA
1 AAGAGCTTCCCGTTATACAGCTCAC
15077984 AAGAGCT
1 AAGAGCT
15077991 ACTCGTTTCT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (25 bp):
AAGAGCTTCCCGTTATACAGCTCAC
Found at i:15079473 original size:25 final size:24
Alignment explanation
Indices: 15079408--15079505 Score: 90
Period size: 24 Copynumber: 4.0 Consensus size: 24
15079398 AGCGTCTAGT
* *
15079408 TATTAGCTCTCATGAGCATCCCGA
1 TATTGGCTCTCATGAGCTTCCCGA
* *
15079432 TATTGGCTCTCTTGAGCTTCCTGA
1 TATTGGCTCTCATGAGCTTCCCGA
*
15079456 TATTTGGCTCTCACGAGCTTCCC-A
1 TA-TTGGCTCTCATGAGCTTCCCGA
* * * *
15079480 TTAATAGCTCTTATGAGCATCCCGA
1 -TATTGGCTCTCATGAGCTTCCCGA
15079505 T
1 T
15079506 TGGTCGTGAT
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
24 39 0.66
25 20 0.34
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (24 bp):
TATTGGCTCTCATGAGCTTCCCGA
Found at i:15079575 original size:24 final size:23
Alignment explanation
Indices: 15079545--15079592 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
15079535 CACCGCAGCT
15079545 TTTATGAGCGTCCTAATATTTGGC
1 TTTATGAGCGTCCTAA-ATTTGGC
* *
15079569 TTTATGAGCTTCCTGAATTTGGC
1 TTTATGAGCGTCCTAAATTTGGC
15079592 T
1 T
15079593 CTCTTGAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (23 bp):
TTTATGAGCGTCCTAAATTTGGC
Found at i:15079623 original size:48 final size:50
Alignment explanation
Indices: 15079571--15079679 Score: 132
Period size: 49 Copynumber: 2.2 Consensus size: 50
15079561 TATTTGGCTT
* * * ** * * *
15079571 TATGAGCTTCCTGA-ATTTGGCTCTCTTGAGCTTTCTGTT-TATGGCTCG
1 TATGAGCTTCCTGATAATTAGCTCACAAGAGCTTCCTGTTATATAGCTCA
15079619 TATGAGCTTCCTGATAATTAGCTCACAAGAGCTTCCTGTTATATAGCTCA
1 TATGAGCTTCCTGATAATTAGCTCACAAGAGCTTCCTGTTATATAGCTCA
15079669 TATGAGCTTCC
1 TATGAGCTTCC
15079680 CGTTTTATGG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 14 0.27
49 19 0.37
50 18 0.35
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (50 bp):
TATGAGCTTCCTGATAATTAGCTCACAAGAGCTTCCTGTTATATAGCTCA
Found at i:15079692 original size:25 final size:25
Alignment explanation
Indices: 15079571--15079692 Score: 83
Period size: 25 Copynumber: 5.0 Consensus size: 25
15079561 TATTTGGCTT
**
15079571 TATGAGCTTCCTGAATT-TGGCTC-
1 TATGAGCTTCCTGTTTTATGGCTCA
* * *
15079594 TCTTGAGCTTTCTG-TTTATGGCTCG
1 T-ATGAGCTTCCTGTTTTATGGCTCA
*
15079619 TATGAGCTTCCTGATAATTA--GCTCA
1 TATGAGCTTCCTG-T-TTTATGGCTCA
* * * *
15079644 CAAGAGCTTCCTGTTATATAGCTCA
1 TATGAGCTTCCTGTTTTATGGCTCA
*
15079669 TATGAGCTTCCCGTTTTATGGCTC
1 TATGAGCTTCCTGTTTTATGGCTC
15079693 GAAAGAGTTA
Statistics
Matches: 75, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
23 5 0.07
24 27 0.36
25 40 0.53
27 3 0.04
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (25 bp):
TATGAGCTTCCTGTTTTATGGCTCA
Found at i:15083913 original size:76 final size:76
Alignment explanation
Indices: 15083812--15084058 Score: 314
Period size: 76 Copynumber: 3.2 Consensus size: 76
15083802 AGGACGTATA
* * *
15083812 CACACATTTAATATTGTCAGTTTATCCGACTAGTGTTGGACACAAATCTTTATCGGTTAATCCGA
1 CACACATTTAATATCGTCGGTTTATCCGACTAGTGTTGGGCACAAATCTTTATCGGTTAATCCGA
*
15083877 CTAGTGTTGGG
66 CTAGTGCTGGG
* * * ** *
15083888 CACATATTTAATATCGTCGGTTTATCCGATTAGTGTTGGGCATAAATCTTTATTAGTTAATCCGG
1 CACACATTTAATATCGTCGGTTTATCCGACTAGTGTTGGGCACAAATCTTTATCGGTTAATCCGA
* *
15083953 CTAGTACTAGG
66 CTAGTGCTGGG
* * * * * *
15083964 CGCACATTTAATATCGTCGGTTTATCTGACTAGTGCTGGGCGCAAATCTTTGTCGGTTAATTCGA
1 CACACATTTAATATCGTCGGTTTATCCGACTAGTGTTGGGCACAAATCTTTATCGGTTAATCCGA
15084029 CTAGTGCTGGG
66 CTAGTGCTGGG
* *
15084040 TACACATTTAGTATCGTCG
1 CACACATTTAATATCGTCG
15084059 ATTGATCTGA
Statistics
Matches: 142, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
76 142 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (76 bp):
CACACATTTAATATCGTCGGTTTATCCGACTAGTGTTGGGCACAAATCTTTATCGGTTAATCCGA
CTAGTGCTGGG
Found at i:15083922 original size:40 final size:39
Alignment explanation
Indices: 15083812--15084058 Score: 138
Period size: 36 Copynumber: 6.5 Consensus size: 39
15083802 AGGACGTATA
* * *
15083812 CACACATTTAATATTGTCAGTTTATCCGACTAGTGTTGGA
1 CACAAATTTAATA-TGTCGGTTTATCCGACTAGTGTTGGG
*
15083852 CACAAATCTT--TA--TCGGTTAATCCGACTAGTGTTGGG
1 CACAAAT-TTAATATGTCGGTTTATCCGACTAGTGTTGGG
* *
15083888 CACATATTTAATATCGTCGGTTTATCCGATTAGTGTTGGG
1 CACAAATTTAATAT-GTCGGTTTATCCGACTAGTGTTGGG
* * * * ** *
15083928 CATAAATCTT--TAT-T-AGTTAATCCGGCTAGTACTAGG
1 CACAAAT-TTAATATGTCGGTTTATCCGACTAGTGTTGGG
* * * *
15083964 CGCACATTTAATATCGTCGGTTTATCTGACTAGTGCTGGG
1 CACAAATTTAATAT-GTCGGTTTATCCGACTAGTGTTGGG
* * * * *
15084004 CGCAAATCT--T-TGTCGGTTAATTCGACTAGTGCTGGG
1 CACAAATTTAATATGTCGGTTTATCCGACTAGTGTTGGG
* * *
15084040 TACACATTTAGTATCGTCG
1 CACAAATTTAATAT-GTCG
15084059 ATTGATCTGA
Statistics
Matches: 157, Mismatches: 34, Indels: 32
0.70 0.15 0.14
Matches are distributed among these distances:
35 4 0.03
36 73 0.46
37 7 0.04
38 2 0.01
39 7 0.04
40 60 0.38
41 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (39 bp):
CACAAATTTAATATGTCGGTTTATCCGACTAGTGTTGGG
Found at i:15085590 original size:17 final size:17
Alignment explanation
Indices: 15085570--15085604 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15085560 GTAAAAAAAT
* *
15085570 GATAAAAGTATAATTTA
1 GATAAAAATAGAATTTA
15085587 GATAAAAATAGAATTTA
1 GATAAAAATAGAATTTA
15085604 G
1 G
15085605 GAAAAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.31
Consensus pattern (17 bp):
GATAAAAATAGAATTTA
Found at i:15085693 original size:13 final size:13
Alignment explanation
Indices: 15085677--15085703 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15085667 AGCAGAGAAT
15085677 TGTGAGAAATGTG
1 TGTGAGAAATGTG
15085690 TGTGAGAAATGTG
1 TGTGAGAAATGTG
15085703 T
1 T
15085704 TGGGGGTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (13 bp):
TGTGAGAAATGTG
Found at i:15091015 original size:20 final size:21
Alignment explanation
Indices: 15090990--15091028 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15090980 AAACTGACTT
*
15090990 TTGAAAAGCT-TTTGTTTGGC
1 TTGAAAAACTATTTGTTTGGC
15091010 TTGAAAAACTATTTGTTTG
1 TTGAAAAACTATTTGTTTG
15091029 CAATTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (21 bp):
TTGAAAAACTATTTGTTTGGC
Found at i:15097040 original size:31 final size:31
Alignment explanation
Indices: 15097005--15097064 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
15096995 GTTTTTTGAA
*
15097005 CTATTCAAAAATTTTTATTTAAGTCACTGAG
1 CTATTCAAAAATTTTTATTTAAATCACTGAG
**
15097036 CTATTCAAATGTTTTTATTTAAATCACTG
1 CTATTCAAAAATTTTTATTTAAATCACTG
15097065 GGTTGTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.45
Consensus pattern (31 bp):
CTATTCAAAAATTTTTATTTAAATCACTGAG
Found at i:15097788 original size:6 final size:6
Alignment explanation
Indices: 15097777--15097830 Score: 99
Period size: 6 Copynumber: 9.0 Consensus size: 6
15097767 AATTCAAAGC
15097777 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
15097825 ATAATA
1 AAAATA
15097831 TATTAGTATG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:15097960 original size:20 final size:19
Alignment explanation
Indices: 15097915--15097959 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
15097905 TATTCTTTAA
*
15097915 AATTTTTATAAATATTTTG
1 AATTTTTAAAAATATTTTG
15097934 AATTTTTAAAAATTATTTT-
1 AATTTTTAAAAA-TATTTTG
15097953 AATTTTT
1 AATTTTT
15097960 TTATTGTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
AATTTTTAAAAATATTTTG
Found at i:15100651 original size:18 final size:18
Alignment explanation
Indices: 15100594--15100651 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 18
15100584 AGTTTTTTAA
15100594 TGTTTTTTGCTTAGAAAAT
1 TGTTTTTT-CTTAGAAAAT
*
15100613 TGTTTTTTTATTCAAAGAAAAT
1 TG-TTTTTTCTT---AGAAAAT
15100635 TGTTTTTTCTTAGAAAA
1 TGTTTTTTCTTAGAAAA
15100652 GATGTTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
18 6 0.18
19 4 0.12
20 6 0.18
21 8 0.24
22 9 0.27
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (18 bp):
TGTTTTTTCTTAGAAAAT
Found at i:15101107 original size:33 final size:33
Alignment explanation
Indices: 15101043--15101118 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
15101033 TGACTATTGA
* * * **
15101043 GGAGGGTGATGTTGAAGGGGTGGAAGTTGATGG
1 GGAGGGTGATGATGAAGGAGTAGAAACTGATGG
15101076 GGAGGGTGATGATGAAGGAGTAGAAACTGATGG
1 GGAGGGTGATGATGAAGGAGTAGAAACTGATGG
* *
15101109 TGATGGTGAT
1 GGAGGGTGAT
15101119 CTAGAAAAGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.26, C:0.01, G:0.49, T:0.24
Consensus pattern (33 bp):
GGAGGGTGATGATGAAGGAGTAGAAACTGATGG
Found at i:15104212 original size:16 final size:16
Alignment explanation
Indices: 15104191--15104229 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
15104181 GTTTTTGGCT
15104191 TGTATAGGGTGAATGG
1 TGTATAGGGTGAATGG
15104207 TGTATAGGGTGAATGG
1 TGTATAGGGTGAATGG
15104223 TGTATAG
1 TGTATAG
15104230 ACTAATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.33
Consensus pattern (16 bp):
TGTATAGGGTGAATGG
Found at i:15104618 original size:211 final size:210
Alignment explanation
Indices: 15104253--15104667 Score: 663
Period size: 211 Copynumber: 2.0 Consensus size: 210
15104243 TTTTGTAAAG
* * *
15104253 TACATTTATCCAAATTGCAAAGGGGAAATCATATGCTTAAATGATCAAATTTGTCTTTTTAGTCT
1 TACATTTATCCAAATCGCAAAGGGGAAATCATATGCTTAAATGATCAAAGTTGTCCTTTTAGTCT
* *
15104318 TATGTTTATTGTCACTGCATTATTTATTAAACTAAATTAAATTAGGCATAAACAATAAATATTAG
66 TATGTTTATTGTCACTGCATTATTTACTAAACTAAATTAAATTAGGCATAAACAACAAATATTAG
* *
15104383 CCATTACTTCCAAGCATTATGTTAAATTACATAAAAAAACAACCAATATTAGTTAATCAACATTT
131 CCATTACTTCCAAGCATAATGTTAAATTACAT-AAAAAACAACCAATATTAGTCAATCAACATTT
15104448 GCAACTGCTAGCTGCA
195 GCAACTGCTAGCTGCA
*
15104464 TACATTTATCTAAATCGCAATA-GGGAAATCATATGCTTAAATGATCAAAGTTGTCCTTTTAGTC
1 TACATTTATCCAAATCGCAA-AGGGGAAATCATATGCTTAAATGATCAAAGTTGTCCTTTTAGTC
* *
15104528 TTATGTTTATTGTTACTGCATTATTTACTAAGCTAAATTAAATTAGGCATAAACAACAAATATT-
65 TTATGTTTATTGTCACTGCATTATTTACTAAACTAAATTAAATTAGGCATAAACAACAAATATTA
* *
15104592 GATCATTACTTCCAAGCATAATGTTAAATTACATAAAAAACAACCAATATTTGTCAATCAACATT
130 G-CCATTACTTCCAAGCATAATGTTAAATTACATAAAAAACAACCAATATTAGTCAATCAACATT
* *
15104657 TGTAATTGCTA
194 TGCAACTGCTA
15104668 ATTGCATATG
Statistics
Matches: 188, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
210 39 0.21
211 148 0.79
212 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (210 bp):
TACATTTATCCAAATCGCAAAGGGGAAATCATATGCTTAAATGATCAAAGTTGTCCTTTTAGTCT
TATGTTTATTGTCACTGCATTATTTACTAAACTAAATTAAATTAGGCATAAACAACAAATATTAG
CCATTACTTCCAAGCATAATGTTAAATTACATAAAAAACAACCAATATTAGTCAATCAACATTTG
CAACTGCTAGCTGCA
Found at i:15107284 original size:31 final size:32
Alignment explanation
Indices: 15107246--15107307 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 32
15107236 GGCAAATTTA
15107246 AAGAGTAATTGAATCCTAAT-AAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTC
15107277 AAGAGTAATTGAATCCTAATAAAAACTCTTT
1 AAGAGTAATTGAATCCTAATAAAAACTCTTT
15107308 AAAATTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 20 0.67
32 10 0.33
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.32
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTC
Found at i:15111991 original size:21 final size:21
Alignment explanation
Indices: 15111966--15112012 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
15111956 CAACTTTTTT
15111966 TTTTTGCAGTTTTTTTTGCGC
1 TTTTTGCAGTTTTTTTTGCGC
** *
15111987 TTTTTGCTTTTTTTTTTGCGG
1 TTTTTGCAGTTTTTTTTGCGC
15112008 TTTTT
1 TTTTT
15112013 TTTGCGCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.11, G:0.17, T:0.70
Consensus pattern (21 bp):
TTTTTGCAGTTTTTTTTGCGC
Found at i:15112002 original size:33 final size:33
Alignment explanation
Indices: 15111961--15112036 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
15111951 GTAGGCAACT
15111961 TTTTTTTTTTGCAGTTTTTTTTGCGCTTTTTGC
1 TTTTTTTTTTGCAGTTTTTTTTGCGCTTTTTGC
*
15111994 TTTTTTTTTTGCGGTTTTTTTTGCGCTTTTTGC
1 TTTTTTTTTTGCAGTTTTTTTTGCGCTTTTTGC
15112027 TTTTTTTTTT
1 TTTTTTTTTT
15112037 AAGAATAAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.01, C:0.11, G:0.14, T:0.74
Consensus pattern (33 bp):
TTTTTTTTTTGCAGTTTTTTTTGCGCTTTTTGC
Done.