Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 61 of 126
Found at i:17761321 original size:37 final size:36
Alignment explanation
Indices: 17761176--17761327 Score: 196
Period size: 37 Copynumber: 4.0 Consensus size: 36
17761166 GTGTTAATTC
* *
17761176 AAGACTTATGTAATGTTTTTTAATTATGTAGTGTTAATTC
1 AAGACTTATGTAATG--TTTTAATTATGTAGTG--ATTTA
* *
17761216 AAGACTTATGTAATGTTTTCAATTATGTAGTGACTCA
1 AAGACTTATGTAATGTTTT-AATTATGTAGTGATTTA
17761253 AAGACTTATGTAATAGTTTTAATTATGTAGTGATTTA
1 AAGACTTATGTAAT-GTTTTAATTATGTAGTGATTTA
*
17761290 AAGATTTATGTAATGCTTTTAATTATGTAGTGATTTA
1 AAGACTTATGTAATG-TTTTAATTATGTAGTGATTTA
17761327 A
1 A
17761328 TTCGAGTAAT
Statistics
Matches: 103, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
36 1 0.01
37 66 0.64
38 9 0.09
39 12 0.12
40 15 0.15
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.46
Consensus pattern (36 bp):
AAGACTTATGTAATGTTTTAATTATGTAGTGATTTA
Found at i:17761345 original size:9 final size:9
Alignment explanation
Indices: 17761333--17761415 Score: 85
Period size: 9 Copynumber: 8.8 Consensus size: 9
17761323 TTTAATTCGA
17761333 GTAATTTGG
1 GTAATTTGG
17761342 GTAATTTTCGG
1 GTAA-TTT-GG
*
17761353 GTAATTCGG
1 GTAATTTGG
17761362 GTAATTTGG
1 GTAATTTGG
17761371 GTAATTTTCGG
1 GTAA-TTT-GG
* *
17761382 ATAATTCGG
1 GTAATTTGG
*
17761391 GTAATTCGG
1 GTAATTTGG
*
17761400 GTAATTCGG
1 GTAATTTGG
17761409 GTAATTT
1 GTAATTT
17761416 TTAACCAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
9 43 0.67
10 10 0.16
11 11 0.17
ACGTcount: A:0.23, C:0.07, G:0.29, T:0.41
Consensus pattern (9 bp):
GTAATTTGG
Found at i:17761367 original size:29 final size:29
Alignment explanation
Indices: 17761325--17761414 Score: 139
Period size: 29 Copynumber: 3.2 Consensus size: 29
17761315 TGTAGTGATT
*
17761325 TAATTCGAGTAATTTGGGTAATTTTCGGG
1 TAATTCGGGTAATTTGGGTAATTTTCGGG
*
17761354 TAATTCGGGTAATTTGGGTAATTTTCGGA
1 TAATTCGGGTAATTTGGGTAATTTTCGGG
*
17761383 TAATTCGGGTAATTCGGGTAA--TTCGGG
1 TAATTCGGGTAATTTGGGTAATTTTCGGG
17761410 TAATT
1 TAATT
17761415 TTTAACCAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 10 0.18
29 47 0.82
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (29 bp):
TAATTCGGGTAATTTGGGTAATTTTCGGG
Found at i:17761375 original size:38 final size:37
Alignment explanation
Indices: 17761325--17761415 Score: 121
Period size: 38 Copynumber: 2.4 Consensus size: 37
17761315 TGTAGTGATT
* *
17761325 TAATTCGAGTAATTT-GGGTAATTTTCGGGTAATTCGGG
1 TAATTCGGGTAATTTCGGATAA--TTCGGGTAATTCGGG
*
17761363 TAATTTGGGTAATTTTCGGATAATTCGGGTAATTCGGG
1 TAATTCGGGTAA-TTTCGGATAATTCGGGTAATTCGGG
17761401 TAATTCGGGTAATTT
1 TAATTCGGGTAATTT
17761416 TTAACCAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
37 3 0.06
38 36 0.77
39 3 0.06
40 5 0.11
ACGTcount: A:0.24, C:0.08, G:0.27, T:0.41
Consensus pattern (37 bp):
TAATTCGGGTAATTTCGGATAATTCGGGTAATTCGGG
Found at i:17761524 original size:28 final size:30
Alignment explanation
Indices: 17761443--17761524 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 30
17761433 ACACATATTT
17761443 TTCGGTTAATTCGGTTAACCAAAAAAATTTCGG
1 TTCGGTTAA-TCGGTTAA--AAAAAAATTTCGG
*** **
17761476 TTCGGTTAATTATTTTTAAAAAAA-TTCGG
1 TTCGGTTAATCGGTTAAAAAAAAATTTCGG
17761505 TTCGGTTAA-CGGTTAAAAAA
1 TTCGGTTAATCGGTTAAAAAA
17761525 TTTGGGAGGT
Statistics
Matches: 39, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
28 6 0.15
29 14 0.36
30 7 0.18
32 3 0.08
33 9 0.23
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (30 bp):
TTCGGTTAATCGGTTAAAAAAAAATTTCGG
Found at i:17763437 original size:98 final size:98
Alignment explanation
Indices: 17763250--17763446 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 98
17763240 GTACAATAAA
*
17763250 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* * * **
17763315 CCTTTAGAATCTCAAATTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
* *
17763348 ACTTTAAAAGAACATCCACTTATTCAAGATTTAAGAAATCATACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
17763413 CCTTTAAAATCCCAAACTCAGAATATTTTCTTT
66 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
17763446 A
1 A
17763447 TTATTTTTAA
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:17765100 original size:17 final size:17
Alignment explanation
Indices: 17765078--17765119 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
17765068 CAAATCTGCT
* * *
17765078 TTTGGGCTTCTGTTTGG
1 TTTGGGCCTCAGTTGGG
17765095 TTTGGGCCTCAGTTGGG
1 TTTGGGCCTCAGTTGGG
17765112 TTTGGGCC
1 TTTGGGCC
17765120 ACATCGGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.17, G:0.38, T:0.43
Consensus pattern (17 bp):
TTTGGGCCTCAGTTGGG
Found at i:17765869 original size:44 final size:44
Alignment explanation
Indices: 17765820--17766362 Score: 209
Period size: 44 Copynumber: 12.5 Consensus size: 44
17765810 GATCTGTTCT
*
17765820 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
17765864 CTGCAACTTCA-AGGAGATAGGAT-TGTCGGCTTTAATCTGCTCTA
1 CTGCAACTTCAGA-GAGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * ** * *
17765908 CTACAACTTCAGGGAGATAAGA-CTTGCCA-CCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATC-TG--AGGTTTTAATCTGCTC-CA
** *
17765953 CTGCAACTTCAG-GAGGATAAGA-CTTG-CTTTGCTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATC-TGAGGTT--TTAATCTGCTCCA
* * *** * *
17765998 CTGTAACTTCA-AGGAGATAAGA-CT-A-GATGCGATCTACT-CT
1 CTGCAACTTCAGA-GAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * **
17766038 CTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
17766082 CTGTAACTTCAGGGAGATAAGAT-TGTCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * * *** * *
17766126 TTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGT-TTTAATCTGCTC-CA
* * * * *
17766171 CTACAACTTCAG-GAGGATAAGA-CT-TGCTTACATATTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTGAGGTT--TTAATCTGCTCCA
* * * * * *** *
17766215 CTGCAACCTCAGGGAGACATGA-CT-A-GATGCGATCTGCT-CT
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* *
17766255 CTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * *
17766299 TTGCAACTTCAG-GAAGATAGGAT-T-ATTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAG-AGATAAGATCTGA--GGTTTTAATCTGCTCCA
* *
17766343 CTGCAACTTTAGGGAGATAA
1 CTGCAACTTCAGAGAGATAA
17766363 AACTCAATTT
Statistics
Matches: 371, Mismatches: 91, Indels: 74
0.69 0.17 0.14
Matches are distributed among these distances:
40 37 0.10
41 16 0.04
42 4 0.01
43 26 0.07
44 190 0.51
45 95 0.26
46 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
Found at i:17765886 original size:217 final size:218
Alignment explanation
Indices: 17765388--17766362 Score: 1425
Period size: 217 Copynumber: 4.5 Consensus size: 218
17765378 TGCTCCACTA
* * * *
17765388 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGTAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17765453 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * * *
17765518 CCGCAGCTTTAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
17765583 AACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
17765606 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAAATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17765671 GTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTTTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * *
17765736 CTGTAACTTCAGGAGGATAAGACTTGC-TTACATATTCGGCTCCACTGCAACCTT-AGGGAGATA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAA-CTTCAGGGAGATA
* **
17765799 TGACTAGATGCGATCTGTTCTCTG
195 AGACTAGATGCGATCTACTCTCTG
* *
17765823 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17765888 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * *
17765953 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
17766018 GACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
17766041 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAAGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* *
17766106 GTCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * *
17766171 CTACAACTTCAGGAGGATAAGACTTGC-TTACATATTCTGCTCCACTGCAACCTCAGGGAGACAT
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
17766235 GACTAGATGCGATCTGCTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
17766258 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCATTGCAACTTCAGGAAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17766323 ATTGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
17766363 AACTCAATTT
Statistics
Matches: 672, Mismatches: 82, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
217 339 0.50
218 333 0.50
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (218 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
GACTAGATGCGATCTACTCTCTG
Found at i:17765962 original size:45 final size:44
Alignment explanation
Indices: 17765426--17766231 Score: 225
Period size: 44 Copynumber: 18.5 Consensus size: 44
17765416 TTAATCCGCT
* * * * *
17765426 TCACTGTAACTTCAGGGAGATAGGA-TTGTC-GACTTTAATCTGC
1 TCACTGCAACTTCAGGGAGATAAGACTTGCCAG-CTTCAGTCTGC
* * * *
17765469 TCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * * **
17765515 TCACCGCAGCTTTA-GGAGGAAAAGACTTGCTTTGCTT-AGTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * *
17765559 TCCACTGCAACTTCAGGGAGATAAAAC-T---AGATGC-GATCTAC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * * **
17765600 TCTCTGCATCTTCAGAGAGATAAGA-TCTG--AGATTTTAATCCAC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCAG-CTTCAGTCTGC
* * * * * * *
17765643 TCCACTGTAACTTCAGGGAAATAGGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* * * *
17765687 TCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTTTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * * *
17765733 TCACTGTAACTTCA-GGAGGATAAGACTTGCTTA-CAT-ATTCGGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * *
17765776 TCCACTGCAACCTT-AGGGAGATATGAC-T---AGATGC-GATCTGT
1 T-CACTGCAA-CTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * *
17765817 TCTCTGCAACTTCAGAGAGATAAGA-TCTG--AGGTTTTAATCCGC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCA-GCTTCAGTCTGC
* * * * * *
17765860 TCCACTGCAACTTCAAGGAGATAGGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* *
17765904 TCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCC
1 TC-ACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
**
17765950 TCACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT-AGTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * * *
17765994 TCCACTGTAACTTCAAGGAGATAAGAC-T---AGATGC-GATCTAC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * * **
17766035 TCTCTGCATCTTCAGAGAGATAAGA-TCTG--AGATTTTAATCCAC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCAG-CTTCAGTCTGC
* * * * *
17766078 TCCACTGTAACTTCAGGGAGATAAGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* * *
17766122 TCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * *
17766168 TCACTACAACTTCA-GGAGGATAAGACTTGCTTA-CAT-ATTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
*
17766211 TCCACTGCAACCTCAGGGAGA
1 T-CACTGCAACTTCAGGGAGA
17766232 CATGACTAGA
Statistics
Matches: 571, Mismatches: 132, Indels: 119
0.69 0.16 0.14
Matches are distributed among these distances:
39 4 0.01
40 62 0.11
41 17 0.03
42 5 0.01
43 31 0.05
44 231 0.40
45 198 0.35
46 23 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
TCACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
Found at i:17766198 original size:435 final size:435
Alignment explanation
Indices: 17765388--17766362 Score: 1628
Period size: 435 Copynumber: 2.2 Consensus size: 435
17765378 TGCTCCACTA
* * * * * *
17765388 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGTAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
* *
17765453 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* * *
17765518 CCGCAGCTTTAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
17765583 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
* *
17765648 TGTAACTTCAGGGAAATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* **
17765713 TTTGCCATCTTCAGTTTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
* * *
17765778 CACTGCAACCTTAGGGAGATATGACTAGATGCGATCTGTTCTCTG
391 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
17765823 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
* *
17765888 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* * *
17765953 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
*
17766018 GACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
* *
17766083 TGTAACTTCAGGGAGATAAGATTGTCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
*
17766148 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCTGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
17766213 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
391 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
* *
17766258 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCATTGCAACTTC-AGGAAGATAGGAT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGG-AGATAGGAT
* * * *
17766322 TATTGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAA
65 TGTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
17766363 AACTCAATTT
Statistics
Matches: 504, Mismatches: 35, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
434 3 0.01
435 501 0.99
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (435 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
Found at i:17778132 original size:133 final size:133
Alignment explanation
Indices: 17777984--17778249 Score: 496
Period size: 133 Copynumber: 2.0 Consensus size: 133
17777974 TCGAGAATTT
* *
17777984 GAAAAAAACATAATCCTTAGCTAAACTTAAAAGGTTACGTATTAAGACCCTTATTATTTTAGAGA
1 GAAAAAAACATAATCCTTAGCAAAACATAAAAGGTTACGTATTAAGACCCTTATTATTTTAGAGA
* *
17778049 AAGAGGATACCACACCCAATGCTTTAGGGCACAGCATTCTAATTTTCCCCAAAATGAATTGGGCC
66 AAGAGGATACCACACCCAATGCGTTAGGGCACAACATTCTAATTTTCCCCAAAATGAATTGGGCC
17778114 AAA
131 AAA
17778117 GAAAAAAACATAATCCTTAGCAAAACATAAAAGGTTACGTATTAAGACCCTTATTATTTTAGAGA
1 GAAAAAAACATAATCCTTAGCAAAACATAAAAGGTTACGTATTAAGACCCTTATTATTTTAGAGA
17778182 AAGAGGATACCACACCCAATGCGTTAGGGCACAACATTCTAATTTTCCCCAAAATGAATTGGGCC
66 AAGAGGATACCACACCCAATGCGTTAGGGCACAACATTCTAATTTTCCCCAAAATGAATTGGGCC
17778247 AAA
131 AAA
17778250 ATACTTGTAC
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 129 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (133 bp):
GAAAAAAACATAATCCTTAGCAAAACATAAAAGGTTACGTATTAAGACCCTTATTATTTTAGAGA
AAGAGGATACCACACCCAATGCGTTAGGGCACAACATTCTAATTTTCCCCAAAATGAATTGGGCC
AAA
Found at i:17778452 original size:98 final size:98
Alignment explanation
Indices: 17778266--17778462 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
17778256 GTACAATAAA
*
17778266 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* * * *
17778331 CCTTTAGAATCTCAAATTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
*
17778364 ACTTTAAAAGAACATCCACTTATCTAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
17778429 CCTTTAAAATCCCAAACTCGGAATATTTTCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
17778462 A
1 A
17778463 TTATTTTTAA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:17778594 original size:141 final size:141
Alignment explanation
Indices: 17778340--17778623 Score: 534
Period size: 141 Copynumber: 2.0 Consensus size: 141
17778330 TCCTTTAGAA
17778340 TCTCAAATTTGGAATATTTCCTTTACTTTAAAAGAACATCCACTTATCTAAGATTTAAGAAATCA
1 TCTCAAATTTGGAATATTTCCTTTACTTTAAAAGAACATCCACTTATCTAAGATTTAAGAAATCA
*
17778405 CACCCAATACGTTAGGGCACAATTCCTTTAAAATCCCAAACTCGGAATATTTTCTTTATTATTTT
66 CACCCAATACGTTAGGGCACAATTCCTTTAAAATCCCAAACTCAGAATATTTTCTTTATTATTTT
17778470 TAAAAAAATCT
131 TAAAAAAATCT
17778481 TCTCAAATTTGGAATATTTCCTTTACTTTAAAAGAACATCCACTTAT-TCAAGATTTAAGAAATC
1 TCTCAAATTTGGAATATTTCCTTTACTTTAAAAGAACATCCACTTATCT-AAGATTTAAGAAATC
*
17778545 ATACCCAATACGTTAGGGCACAATTCCTTTAAAATCCCAAACTCAGAATATTTTCTTTATTATTT
65 ACACCCAATACGTTAGGGCACAATTCCTTTAAAATCCCAAACTCAGAATATTTTCTTTATTATTT
17778610 TTAAAAAAATCT
130 TTAAAAAAATCT
17778622 TC
1 TC
17778624 ATTTCGAGAA
Statistics
Matches: 140, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
140 1 0.01
141 139 0.99
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (141 bp):
TCTCAAATTTGGAATATTTCCTTTACTTTAAAAGAACATCCACTTATCTAAGATTTAAGAAATCA
CACCCAATACGTTAGGGCACAATTCCTTTAAAATCCCAAACTCAGAATATTTTCTTTATTATTTT
TAAAAAAATCT
Found at i:17778956 original size:149 final size:150
Alignment explanation
Indices: 17778685--17778985 Score: 577
Period size: 149 Copynumber: 2.0 Consensus size: 150
17778675 AATTCCCAAT
17778685 AATGAACTCTTATTTTGATTAAAAGAATATCCATTTTAAAAAATTTGATTTAAAAAAAATCGAGT
1 AATGAACTCTTATTTTGATTAAAAGAATATCCATTTTAAAAAATTTGATTTAAAAAAAATCGAGT
*
17778750 AAAAAAATGTAATGTTATGCTTCATTGAATATATAATGCAATAATAAATGCTACGATAGCATAGA
66 AAAAAAATGTAATGTTATGCTTCATTGAATATATAATGCAATAATAAATACTACGATAGCATAGA
17778815 AATAATGCAAATATATGAAC
131 AATAATGCAAATATATGAAC
17778835 AATGAACTCTTATTTTGATTAAAAGAATATCCATTTTAAAAAATTTGATTT-AAAAAAATCGAGT
1 AATGAACTCTTATTTTGATTAAAAGAATATCCATTTTAAAAAATTTGATTTAAAAAAAATCGAGT
*
17778899 AAAAAAATGTAATGTTATGCTTCATTGAATATATAATGCAATAATAGATACTACGATAGCATAGA
66 AAAAAAATGTAATGTTATGCTTCATTGAATATATAATGCAATAATAAATACTACGATAGCATAGA
17778964 AATAATGCAAATATATGAAC
131 AATAATGCAAATATATGAAC
17778984 AA
1 AA
17778986 ATAAATAATG
Statistics
Matches: 149, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
149 98 0.66
150 51 0.34
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.33
Consensus pattern (150 bp):
AATGAACTCTTATTTTGATTAAAAGAATATCCATTTTAAAAAATTTGATTTAAAAAAAATCGAGT
AAAAAAATGTAATGTTATGCTTCATTGAATATATAATGCAATAATAAATACTACGATAGCATAGA
AATAATGCAAATATATGAAC
Found at i:17779705 original size:87 final size:87
Alignment explanation
Indices: 17779559--17779727 Score: 275
Period size: 87 Copynumber: 1.9 Consensus size: 87
17779549 GCCAAAAGCG
* *
17779559 TAATTTGCCCCTCTGCTCAAAAACGCGCGGACCCTAGGCCGAATCGGGTCGGACTCGGGTCGACC
1 TAATTTGCCCCTCCGCTCAAAAACGCGCGGACCCTAGGCCGAATCGGGTCGGACTCGGGTCAACC
17779624 CGTGTCCAAAACAACGCCGTTA
66 CGTGTCCAAAACAACGCCGTTA
* * *
17779646 TAATTTGCCCCTCCGTTCAAAAACGCGTGGACCCTAGGCCGGATCGGGTCGGACTCGGGTCAACC
1 TAATTTGCCCCTCCGCTCAAAAACGCGCGGACCCTAGGCCGAATCGGGTCGGACTCGGGTCAACC
* *
17779711 CGTTTCCAAAACGACGC
66 CGTGTCCAAAACAACGC
17779728 TGTTTTGAAG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 75 1.00
ACGTcount: A:0.22, C:0.33, G:0.25, T:0.19
Consensus pattern (87 bp):
TAATTTGCCCCTCCGCTCAAAAACGCGCGGACCCTAGGCCGAATCGGGTCGGACTCGGGTCAACC
CGTGTCCAAAACAACGCCGTTA
Found at i:17781138 original size:17 final size:17
Alignment explanation
Indices: 17781116--17781157 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
17781106 CAAATCTGCT
* * *
17781116 TTTGGGCTTCTGTTTGG
1 TTTGGGCCTCAGTTGGG
17781133 TTTGGGCCTCAGTTGGG
1 TTTGGGCCTCAGTTGGG
17781150 TTTGGGCC
1 TTTGGGCC
17781158 ACATCGGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.17, G:0.38, T:0.43
Consensus pattern (17 bp):
TTTGGGCCTCAGTTGGG
Found at i:17781907 original size:44 final size:44
Alignment explanation
Indices: 17781858--17782400 Score: 209
Period size: 44 Copynumber: 12.5 Consensus size: 44
17781848 GATCTGTTCT
*
17781858 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
17781902 CTGCAACTTCA-AGGAGATAGGAT-TGTCGGCTTTAATCTGCTCTA
1 CTGCAACTTCAGA-GAGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * ** * *
17781946 CTACAACTTCAGGGAGATAAGA-CTTGCCA-CCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATC-TG--AGGTTTTAATCTGCTC-CA
** *
17781991 CTGCAACTTCAG-GAGGATAAGA-CTTG-CTTTGCTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATC-TGAGGTT--TTAATCTGCTCCA
* * *** * *
17782036 CTGTAACTTCA-AGGAGATAAGA-CT-A-GATGCGATCTACT-CT
1 CTGCAACTTCAGA-GAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * **
17782076 CTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
17782120 CTGTAACTTCAGGGAGATAAGAT-TGTCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * * *** * *
17782164 TTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGT-TTTAATCTGCTC-CA
* * * * *
17782209 CTACAACTTCAG-GAGGATAAGA-CT-TGCTTACATATTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTGAGGTT--TTAATCTGCTCCA
* * * * * *** *
17782253 CTGCAACCTCAGGGAGACATGA-CT-A-GATGCGATCTGCT-CT
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* *
17782293 CTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * *
17782337 TTGCAACTTCAG-GAAGATAGGAT-T-ATTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAG-AGATAAGATCTGA--GGTTTTAATCTGCTCCA
* *
17782381 CTGCAACTTTAGGGAGATAA
1 CTGCAACTTCAGAGAGATAA
17782401 AACTCAATTT
Statistics
Matches: 371, Mismatches: 91, Indels: 74
0.69 0.17 0.14
Matches are distributed among these distances:
40 37 0.10
41 16 0.04
42 4 0.01
43 26 0.07
44 190 0.51
45 95 0.26
46 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
Found at i:17781924 original size:217 final size:218
Alignment explanation
Indices: 17781426--17782400 Score: 1425
Period size: 217 Copynumber: 4.5 Consensus size: 218
17781416 TGCTCCACTA
* * * *
17781426 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGTAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17781491 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * * *
17781556 CCGCAGCTTTAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
17781621 AACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
17781644 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAAATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17781709 GTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTTTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * *
17781774 CTGTAACTTCAGGAGGATAAGACTTGC-TTACATATTCGGCTCCACTGCAACCTT-AGGGAGATA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAA-CTTCAGGGAGATA
* **
17781837 TGACTAGATGCGATCTGTTCTCTG
195 AGACTAGATGCGATCTACTCTCTG
* *
17781861 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17781926 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * *
17781991 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
17782056 GACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
17782079 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAAGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* *
17782144 GTCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * *
17782209 CTACAACTTCAGGAGGATAAGACTTGC-TTACATATTCTGCTCCACTGCAACCTCAGGGAGACAT
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
17782273 GACTAGATGCGATCTGCTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
17782296 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCATTGCAACTTCAGGAAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
* * *
17782361 ATTGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
17782401 AACTCAATTT
Statistics
Matches: 672, Mismatches: 82, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
217 339 0.50
218 333 0.50
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (218 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
GACTAGATGCGATCTACTCTCTG
Found at i:17782000 original size:45 final size:44
Alignment explanation
Indices: 17781464--17782269 Score: 225
Period size: 44 Copynumber: 18.5 Consensus size: 44
17781454 TTAATCCGCT
* * * * *
17781464 TCACTGTAACTTCAGGGAGATAGGA-TTGTC-GACTTTAATCTGC
1 TCACTGCAACTTCAGGGAGATAAGACTTGCCAG-CTTCAGTCTGC
* * * *
17781507 TCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * * **
17781553 TCACCGCAGCTTTA-GGAGGAAAAGACTTGCTTTGCTT-AGTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * *
17781597 TCCACTGCAACTTCAGGGAGATAAAAC-T---AGATGC-GATCTAC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * * **
17781638 TCTCTGCATCTTCAGAGAGATAAGA-TCTG--AGATTTTAATCCAC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCAG-CTTCAGTCTGC
* * * * * * *
17781681 TCCACTGTAACTTCAGGGAAATAGGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* * * *
17781725 TCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTTTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * * *
17781771 TCACTGTAACTTCA-GGAGGATAAGACTTGCTTA-CAT-ATTCGGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * *
17781814 TCCACTGCAACCTT-AGGGAGATATGAC-T---AGATGC-GATCTGT
1 T-CACTGCAA-CTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * *
17781855 TCTCTGCAACTTCAGAGAGATAAGA-TCTG--AGGTTTTAATCCGC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCA-GCTTCAGTCTGC
* * * * * *
17781898 TCCACTGCAACTTCAAGGAGATAGGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* *
17781942 TCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCC
1 TC-ACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
**
17781988 TCACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT-AGTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
* * * * *
17782032 TCCACTGTAACTTCAAGGAGATAAGAC-T---AGATGC-GATCTAC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGC
* * * * * * **
17782073 TCTCTGCATCTTCAGAGAGATAAGA-TCTG--AGATTTTAATCCAC
1 TCACTGCAACTTCAGGGAGATAAGACT-TGCCAG-CTTCAGTCTGC
* * * * *
17782116 TCCACTGTAACTTCAGGGAGATAAGA-TTGTCGGCTTTAATCTGC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
* * *
17782160 TCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCC
1 T-CACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTG-C
* * * *
17782206 TCACTACAACTTCA-GGAGGATAAGACTTGCTTA-CAT-ATTCTGC
1 TCACTGCAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGC
*
17782249 TCCACTGCAACCTCAGGGAGA
1 T-CACTGCAACTTCAGGGAGA
17782270 CATGACTAGA
Statistics
Matches: 571, Mismatches: 132, Indels: 119
0.69 0.16 0.14
Matches are distributed among these distances:
39 4 0.01
40 62 0.11
41 17 0.03
42 5 0.01
43 31 0.05
44 231 0.40
45 198 0.35
46 23 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
TCACTGCAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGC
Found at i:17782236 original size:435 final size:435
Alignment explanation
Indices: 17781426--17782400 Score: 1628
Period size: 435 Copynumber: 2.2 Consensus size: 435
17781416 TGCTCCACTA
* * * * * *
17781426 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGTAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
* *
17781491 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* * *
17781556 CCGCAGCTTTAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
17781621 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
* *
17781686 TGTAACTTCAGGGAAATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* **
17781751 TTTGCCATCTTCAGTTTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
* * *
17781816 CACTGCAACCTTAGGGAGATATGACTAGATGCGATCTGTTCTCTG
391 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
17781861 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
* *
17781926 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* * *
17781991 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
*
17782056 GACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
* *
17782121 TGTAACTTCAGGGAGATAAGATTGTCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
*
17782186 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCTGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
17782251 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
391 CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
* *
17782296 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCATTGCAACTTC-AGGAAGATAGGAT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGG-AGATAGGAT
* * * *
17782360 TATTGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAA
65 TGTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
17782401 AACTCAATTT
Statistics
Matches: 504, Mismatches: 35, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
434 3 0.01
435 501 0.99
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (435 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATT
GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
CCGCAACTTCAGGAGGAAAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
CACTGCAACCTCAGGGAGACATGACTAGATGCGATCTGCTCTCTG
Found at i:17795058 original size:21 final size:21
Alignment explanation
Indices: 17795032--17795075 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
17795022 TTATGAAATG
17795032 AAAGGATAAAGAATGAATACA
1 AAAGGATAAAGAATGAATACA
17795053 AAAGGATAAAGAATGAATACA
1 AAAGGATAAAGAATGAATACA
17795074 AA
1 AA
17795076 CACTAAGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.64, C:0.05, G:0.18, T:0.14
Consensus pattern (21 bp):
AAAGGATAAAGAATGAATACA
Found at i:17795868 original size:11 final size:11
Alignment explanation
Indices: 17795848--17795890 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
17795838 AGATAAATGT
*
17795848 TATTTAATTAA
1 TATTTTATTAA
17795859 TATTTTATTAA
1 TATTTTATTAA
* *
17795870 TATTTTTAGTAT
1 TA-TTTTATTAA
17795882 TATTTTATT
1 TATTTTATT
17795891 GTTAAATGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:17798340 original size:21 final size:21
Alignment explanation
Indices: 17798281--17798340 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
17798271 AAATTATGGT
17798281 TATTATGTTATCTTTAAATCA
1 TATTATGTTATCTTTAAATCA
** **
17798302 TA-TAACTTATACAATAAATCA
1 TATTATGTTAT-CTTTAAATCA
17798323 TATTATGTTATCTTTAAA
1 TATTATGTTATCTTTAAA
17798341 GTACCATAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
20 6 0.21
21 17 0.59
22 6 0.21
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (21 bp):
TATTATGTTATCTTTAAATCA
Found at i:17799720 original size:40 final size:40
Alignment explanation
Indices: 17799675--17799764 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
17799665 TAAGAAACTT
* * * *
17799675 ATTTGGGAATAGAATAACTTGGGGGAAATTGGG-GAAAATA
1 ATTTGGGAA-ACAATAAATTGAGGGAAATTGGGAGAAAAGA
*
17799715 ATTTGGGGAACAATAAATTGAGGGAAATTGGGAGAAAAGA
1 ATTTGGGAAACAATAAATTGAGGGAAATTGGGAGAAAAGA
*
17799755 AGTTGGGAAA
1 ATTTGGGAAA
17799765 TTGGGTAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 20 0.48
40 22 0.52
ACGTcount: A:0.42, C:0.02, G:0.33, T:0.22
Consensus pattern (40 bp):
ATTTGGGAAACAATAAATTGAGGGAAATTGGGAGAAAAGA
Found at i:17799739 original size:16 final size:14
Alignment explanation
Indices: 17799700--17799741 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
17799690 AACTTGGGGG
17799700 AAATTGGGGAAAAT
1 AAATTGGGGAAAAT
*
17799714 AATTTGGGGAACAAT
1 AAATTGGGGAA-AAT
17799729 AAATTGAGGGAAA
1 AAATTG-GGGAAA
17799742 TTGGGAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 10 0.42
15 9 0.38
16 5 0.21
ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21
Consensus pattern (14 bp):
AAATTGGGGAAAAT
Found at i:17800763 original size:7 final size:7
Alignment explanation
Indices: 17800751--17800956 Score: 78
Period size: 7 Copynumber: 28.9 Consensus size: 7
17800741 ACTAATTAAT
17800751 CTAAACC
1 CTAAACC
17800758 CTAAACCC
1 CTAAA-CC
17800766 CTAAACC
1 CTAAACC
*
17800773 CT-ATCC
1 CTAAACC
*
17800779 TTTAAACC
1 -CTAAACC
* *
17800787 CTGAATC
1 CTAAACC
* *
17800794 ATAAAAC
1 CTAAACC
*
17800801 ATAAACC
1 CTAAACC
*
17800808 ATAAACC
1 CTAAACC
*
17800815 CTAAATCT
1 CTAAA-CC
17800823 CT-AACC
1 CTAAACC
17800829 CTTAAACC
1 C-TAAACC
*
17800837 TTAAACC
1 CTAAACC
* **
17800844 CCAATGC
1 CTAAACC
*
17800851 TTAAACC
1 CTAAACC
*
17800858 ATAAACC
1 CTAAACC
*
17800865 ATAAACC
1 CTAAACC
* *
17800872 ATAATCC
1 CTAAACC
17800879 CTAAACC
1 CTAAACC
*
17800886 CATAATCC
1 C-TAAACC
* *
17800894 ATAAACT
1 CTAAACC
*
17800901 TTAAA--
1 CTAAACC
*
17800906 ATAGTAACTC
1 CTA--AAC-C
17800916 CTAAACC
1 CTAAACC
*
17800923 TTAAACC
1 CTAAACC
*
17800930 TTAAACC
1 CTAAACC
17800937 CTAAACC
1 CTAAACC
*
17800944 ATAAACC
1 CTAAACC
17800951 CTAAAC
1 CTAAAC
17800957 TATAATGATA
Statistics
Matches: 150, Mismatches: 37, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
5 2 0.01
6 5 0.03
7 116 0.77
8 25 0.17
10 2 0.01
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:17800819 original size:57 final size:58
Alignment explanation
Indices: 17800752--17800886 Score: 154
Period size: 57 Copynumber: 2.4 Consensus size: 58
17800742 CTAATTAATC
* * *
17800752 TAAACCCTAAACCCCTAAACCC-T-ATCCTTTAAACCCTGAAT-CATAAAACATAAACCA
1 TAAACCCTAAATCCCTAAACCCTTAAACC-TTAAACCC-CAATGCATAAAACATAAACCA
* * *
17800809 TAAACCCTAAATCTCT-AACCCTTAAACCTTAAACCCCAATGCTTAAACCATAAACCA
1 TAAACCCTAAATCCCTAAACCCTTAAACCTTAAACCCCAATGCATAAAACATAAACCA
*
17800866 TAAACCAT-AATCCCTAAACCC
1 TAAACCCTAAATCCCTAAACCC
17800887 ATAATCCATA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
56 14 0.21
57 49 0.74
58 3 0.05
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.21
Consensus pattern (58 bp):
TAAACCCTAAATCCCTAAACCCTTAAACCTTAAACCCCAATGCATAAAACATAAACCA
Found at i:17801350 original size:40 final size:40
Alignment explanation
Indices: 17801292--17801413 Score: 149
Period size: 40 Copynumber: 3.0 Consensus size: 40
17801282 CGGCATTAAA
*
17801292 GCTCGATCTATAGAGGCATTTTACAAAGAGCGCCGCTAAT
1 GCTCGATCTATAGAGGCATTTTTCAAAGAGCGCCGCTAAT
* *
17801332 TCTCGATCTATAGCGGCATTTTTC-AAGTAGCGCCGCTAAT
1 GCTCGATCTATAGAGGCATTTTTCAAAG-AGCGCCGCTAAT
* * * *
17801372 GCTCGACCTACA-ATGGCATTTTTCAAAAAGCACCGCTAAT
1 GCTCGATCTATAGA-GGCATTTTTCAAAGAGCGCCGCTAAT
17801412 GC
1 GC
17801414 CACTAGTGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.04
40 65 0.93
41 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
GCTCGATCTATAGAGGCATTTTTCAAAGAGCGCCGCTAAT
Found at i:17801523 original size:40 final size:40
Alignment explanation
Indices: 17801461--17801566 Score: 149
Period size: 40 Copynumber: 2.6 Consensus size: 40
17801451 TTTTTTGTGG
*
17801461 CATTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGA
1 CATTTTTCAAAAAGCGCTGCTAATGCTCGACCTATAGCGA
* * * *
17801501 CGTTTTTCAAAAAGCGCAGCTAATGCTCGATCTATAGCGG
1 CATTTTTCAAAAAGCGCTGCTAATGCTCGACCTATAGCGA
* *
17801541 TATTTTTCAAAAAGCGTTGCTAATGC
1 CATTTTTCAAAAAGCGCTGCTAATGC
17801567 CACAAAAGCT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (40 bp):
CATTTTTCAAAAAGCGCTGCTAATGCTCGACCTATAGCGA
Found at i:17801609 original size:153 final size:153
Alignment explanation
Indices: 17801306--17801720 Score: 499
Period size: 154 Copynumber: 2.7 Consensus size: 153
17801296 GATCTATAGA
* * * * * * ** *
17801306 GGCATTTTACAAAGAGCGCCGCTAATTCTCGATCTATAGCGGCATTTTTCAAGTAGCGCCGCTAA
1 GGCATTTTTCAAAAAGCGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
* * ** * **
17801371 TGCTCGACCTACAATGGCATTTTTCAAAAAGCACCGCTAATGCCACTAGTGCTCAACATAAAACG
66 TGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCGCTAATGCCACAAAAGCTCAACATAAAACG
** *
17801436 AGGTATTGTGCTTAATTTTTTGT
131 AGACATTGTACTTAATTTTTTGT
* *
17801459 GGCATTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGACGTTTTTCAAAAAGCGCAGCTAA
1 GGCATTTTTCAAAAAGCGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
* *** * *
17801524 TGCTCGATCTATAGCGGTATTTTTCAAAAAGCGTTGCTAATGCCACAAAAGCTCAACATATAATG
66 TGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCGCTAATGCCACAAAAGCTCAACATAAAACG
17801589 ACGACATTGTACTTAATTTTTTGT
131 A-GACATTGTACTTAATTTTTTGT
* * * *
17801613 GACATTTTTCAAAAAGAGCTGCTAATTGTTGACCTATAGCGGCGCTTTTCAAAAAGCGCAGCTAA
1 GGCATTTTTCAAAAAGCGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
* * *
17801678 TGCTCGATCTATAGCGACGTTTTTCGAAAAG-AGCCGCTAATGC
66 TGCTCGATCTATAGCGGCATTTTTCAAAAAGCA-CCGCTAATGC
17801721 TCAATCTATA
Statistics
Matches: 220, Mismatches: 40, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
153 107 0.49
154 113 0.51
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (153 bp):
GGCATTTTTCAAAAAGCGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
TGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCGCTAATGCCACAAAAGCTCAACATAAAACG
AGACATTGTACTTAATTTTTTGT
Found at i:17801662 original size:40 final size:41
Alignment explanation
Indices: 17801618--17801748 Score: 124
Period size: 40 Copynumber: 3.3 Consensus size: 41
17801608 TTTGTGACAT
* * *
17801618 TTTTCAAAAAGAGCTGCTAATTG-TTGACCTATAGCGGCGC
1 TTTTCAAAAAGAGCAGCTAATTGCTCGACCTATAGCGACGC
* * *
17801658 TTTTCAAAAAGCGCAGCTAA-TGCTCGATCTATAGCGACGT
1 TTTTCAAAAAGAGCAGCTAATTGCTCGACCTATAGCGACGC
* * * * * *
17801698 TTTTCGAAAAGAGCCGCTAA-TGCTCAATCTATAGCGGCGT
1 TTTTCAAAAAGAGCAGCTAATTGCTCGACCTATAGCGACGC
*
17801738 TTTTCAGAAAG
1 TTTTCAAAAAG
17801749 CGCCGTTAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.03
40 75 0.97
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (41 bp):
TTTTCAAAAAGAGCAGCTAATTGCTCGACCTATAGCGACGC
Found at i:17801768 original size:40 final size:40
Alignment explanation
Indices: 17801646--17801772 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 40
17801636 AATTGTTGAC
* * *
17801646 CTATAGCGGCGCTTTTCAAAAAGCGCAGCTAATGCTCGAT
1 CTATAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCTCGAT
* * *
17801686 CTATAGCGACGTTTTTC-GAAAAGAGCCGCTAATGCTCAAT
1 CTATAGCGGCGTTTTTCAG-AAAGCGCCGCTAATGCTCGAT
* * *
17801726 CTATAGCGGCGTTTTTCAGAAAGCGCCGTTAATGTTTGAT
1 CTATAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCTCGAT
17801766 CTATAGC
1 CTATAGC
17801773 AATATTTTTT
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
40 72 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (40 bp):
CTATAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCTCGAT
Found at i:17810650 original size:24 final size:24
Alignment explanation
Indices: 17810623--17810671 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
17810613 ATTGGAAATA
*
17810623 TATCAATGAGGAATGAGATGCCCT
1 TATCAAGGAGGAATGAGATGCCCT
*
17810647 TATCAAGGAGGAATGAGATTCCCT
1 TATCAAGGAGGAATGAGATGCCCT
17810671 T
1 T
17810672 GACAAACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (24 bp):
TATCAAGGAGGAATGAGATGCCCT
Found at i:17810951 original size:61 final size:61
Alignment explanation
Indices: 17810856--17810977 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
17810846 TAAGCATGTG
*
17810856 TTTACACGATTTGGGGCACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTGTGAACA
1 TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTGTGAACA
17810917 TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTGTGAACA
1 TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTGTGAACA
17810978 AATGGCTTAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (61 bp):
TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTGTGAACA
Found at i:17824909 original size:68 final size:69
Alignment explanation
Indices: 17824782--17824914 Score: 164
Period size: 68 Copynumber: 1.9 Consensus size: 69
17824772 CATTTAATTT
* *
17824782 CACATTGACTAGAGAATACTCTCACAACTCACTTCTACTATTTTCATTAAAAAAGTTAAT-TTTA
1 CACATTCACTAGAGAATACTCTCACAACTCACTTCTACTATTTACATTAAAAAAGTTAATCTTTA
17824846 ATCA
66 ATCA
* * * * *
17824850 CACATTCATTAGAGAATACTCTCATAGCTCACATTTTCGCTATTTACATT-AAAAA-TTAATCTT
1 CACATTCACTAGAGAATACTCTCACAACTCAC-TTCT-ACTATTTACATTAAAAAAGTTAATCTT
17824913 TA
64 TA
17824915 TCCATTAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
68 33 0.60
69 12 0.22
70 10 0.18
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (69 bp):
CACATTCACTAGAGAATACTCTCACAACTCACTTCTACTATTTACATTAAAAAAGTTAATCTTTA
ATCA
Found at i:17824920 original size:21 final size:21
Alignment explanation
Indices: 17824896--17824937 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
17824886 TCGCTATTTA
17824896 CATTAAAAATTAATCTTTATC
1 CATTAAAAATTAATCTTTATC
*
17824917 CATTAAAAATTAATTTTTATC
1 CATTAAAAATTAATCTTTATC
17824938 TCACATTAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (21 bp):
CATTAAAAATTAATCTTTATC
Found at i:17825157 original size:94 final size:92
Alignment explanation
Indices: 17824818--17825157 Score: 263
Period size: 94 Copynumber: 3.7 Consensus size: 92
17824808 ACTCACTTCT
* * *
17824818 ACTATTTTCATTAAAAAAGTTAATTTTAATCACACATTCATTAGAGAATACTCTCATAGCTCACA
1 ACTATTTTCATT-AAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACA
* ** * * *
17824883 TTTTCGCTATTTACA--TTAAAA-ATTAA
65 TTTAC-CTATAAAAAGGTCAAAATTTTAA
* * * *
17824909 TCT-TTATCCATTAAAAA-TTAATTTTTATCTCACATT-AGCT-G-TAATACAGT-TCCAT-GCT
1 ACTATT-TTCATTAAAAAGTTAATTTTAATCTCACATTGA-CTAGAGAATAC--TCT-CATAGCT
* * *
17824967 CACACTTACCCTATAAATAAGTGTCAAATTTTTTAT
61 CACATTTA-CCTATAAA-AAG-GTCAAA-ATTTTAA
* * * * * *
17825003 A-TATTTTAATT-AAAAGTTAATTTTAATCTCACATTGACTCGAGAACACCCCCATATCTCACAT
1 ACTATTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACAT
*
17825066 TTACCATATAAAAAGGTGAAAATCTTTAA
66 TTACC-TATAAAAAGGTCAAAAT-TTTAA
*
17825095 ACTATTTTTATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCAC
1 ACTATTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCAC
17825158 GTATTCATTA
Statistics
Matches: 192, Mismatches: 34, Indels: 43
0.71 0.13 0.16
Matches are distributed among these distances:
87 5 0.03
88 17 0.09
89 24 0.12
90 7 0.04
91 8 0.04
92 18 0.09
93 42 0.22
94 67 0.35
95 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.38
Consensus pattern (92 bp):
ACTATTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACAT
TTACCTATAAAAAGGTCAAAATTTTAA
Found at i:17825191 original size:70 final size:70
Alignment explanation
Indices: 17825095--17825257 Score: 206
Period size: 70 Copynumber: 2.4 Consensus size: 70
17825085 AAATCTTTAA
* * * * * *
17825095 ACTATTTTTATT-AAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACG
1 ACTATTTTAATTAAAAAAGTTAATTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACG
17825159 TATTC
66 TATTC
* * *
17825164 ATTATTTTAATTAAAAAAGTTAGTTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACT
1 ACTATTTTAATTAAAAAAGTTAATTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACG
17825229 TATTC
66 TATTC
* *
17825234 GCTATTTTCATT-AAAAA-TTAATTT
1 ACTATTTTAATTAAAAAAGTTAATTT
17825258 GAATCCTTCA
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
68 6 0.08
69 15 0.19
70 59 0.74
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.40
Consensus pattern (70 bp):
ACTATTTTAATTAAAAAAGTTAATTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACG
TATTC
Found at i:17825778 original size:93 final size:93
Alignment explanation
Indices: 17825658--17825868 Score: 334
Period size: 93 Copynumber: 2.3 Consensus size: 93
17825648 TTAGCCCCTT
*
17825658 AAAAAGTTAATTTTTTTCCCACTTTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAAT
1 AAAAAGTTAATTTTTTTCCCACATTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAAT
*
17825723 ACGTGTCAATTTCTTCTCTATTTTTATC
66 ACGTGCCAATTTCTTCTCTATTTTTATC
* *
17825751 AAAAAGTTAATTTTTATT-CCACATTGGCTAGAATACACTTCCATGCTCACACATACCTTATAAA
1 AAAAAGTTAATTTTT-TTCCCACATTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAA
*
17825815 TACGTGCCAATTTCTTCTCTATTTTTATT
65 TACGTGCCAATTTCTTCTCTATTTTTATC
* **
17825844 AAAAATTTAATTTTAGTCCCACATT
1 AAAAAGTTAATTTTTTTCCCACATT
17825869 AACTACAAAA
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
92 1 0.01
93 105 0.97
94 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.39
Consensus pattern (93 bp):
AAAAAGTTAATTTTTTTCCCACATTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAAT
ACGTGCCAATTTCTTCTCTATTTTTATC
Found at i:17830060 original size:63 final size:63
Alignment explanation
Indices: 17829936--17830061 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
17829926 TTCTCCCCCA
**
17829936 CCCCCACCCCCAACCCCACCAATGCCTTCCTTCAAATCATTCCAACAACCCTGCCCCTTAAGT
1 CCCCCACCCCCAACCCCACCAATGCCTTCCTTCAAATCATTCCAACAACCCTGCCAATTAAGT
*
17829999 CCCCCACCCCCACCCCCACCAATGCCTTCCTTCAAATCATTCCAACAACCCTGCCAATTAAGT
1 CCCCCACCCCCAACCCCACCAATGCCTTCCTTCAAATCATTCCAACAACCCTGCCAATTAAGT
17830062 TGTAATTGTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.26, C:0.50, G:0.05, T:0.19
Consensus pattern (63 bp):
CCCCCACCCCCAACCCCACCAATGCCTTCCTTCAAATCATTCCAACAACCCTGCCAATTAAGT
Found at i:17830329 original size:23 final size:25
Alignment explanation
Indices: 17830303--17830352 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
17830293 GAATTAATGG
*
17830303 TTGAATTATTTT-T-ATTTTATTTT
1 TTGAATAATTTTATAATTTTATTTT
17830326 TTGAATAATTTTATAATTTTATTTT
1 TTGAATAATTTTATAATTTTATTTT
17830351 TT
1 TT
17830353 TATTCAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 11 0.46
24 1 0.04
25 12 0.50
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (25 bp):
TTGAATAATTTTATAATTTTATTTT
Found at i:17837663 original size:25 final size:23
Alignment explanation
Indices: 17837625--17837670 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
17837615 ATCTTCTTTC
17837625 GTAAAAAGTCAATTACTATCAAATA
1 GTAAAAAGTCAATT--TATCAAATA
17837650 GTAATAAAGT-AATTTATCAAA
1 GTAA-AAAGTCAATTTATCAAA
17837671 AAAAAATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 7 0.35
25 8 0.40
26 5 0.25
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (23 bp):
GTAAAAAGTCAATTTATCAAATA
Found at i:17841685 original size:18 final size:18
Alignment explanation
Indices: 17841664--17841712 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
17841654 TTTGCATAAA
17841664 TAACACAGTTCACCAAAT
1 TAACACAGTTCACCAAAT
* * *
17841682 TAACATAGTTCGCGAAAT
1 TAACACAGTTCACCAAAT
*
17841700 TAACACAATTCAC
1 TAACACAGTTCAC
17841713 ATTATTATAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.24
Consensus pattern (18 bp):
TAACACAGTTCACCAAAT
Found at i:17848663 original size:26 final size:26
Alignment explanation
Indices: 17848627--17848679 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17848617 TATATACTAC
17848627 ACTCGTGAGAGGGAAAGAATGATGTA
1 ACTCGTGAGAGGGAAAGAATGATGTA
17848653 ACTCGTGAGAGGGAAAGAATGATGTA
1 ACTCGTGAGAGGGAAAGAATGATGTA
17848679 A
1 A
17848680 ACAATACTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.34, T:0.19
Consensus pattern (26 bp):
ACTCGTGAGAGGGAAAGAATGATGTA
Found at i:17851495 original size:14 final size:11
Alignment explanation
Indices: 17851464--17851488 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
17851454 GGGGAGGGCA
17851464 AGAAAGGTAGT
1 AGAAAGGTAGT
17851475 AGAAAGGTAGT
1 AGAAAGGTAGT
17851486 AGA
1 AGA
17851489 TCAAAGGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (11 bp):
AGAAAGGTAGT
Found at i:17861711 original size:22 final size:22
Alignment explanation
Indices: 17861683--17861730 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
17861673 TGATTGATTA
*
17861683 GGATATTCTATAGG-GTTTTAAG
1 GGATATTCTAT-GGTATTTTAAG
*
17861705 GGATATTTTATGGTATTTTAAG
1 GGATATTCTATGGTATTTTAAG
17861727 GGAT
1 GGAT
17861731 TGATTAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (22 bp):
GGATATTCTATGGTATTTTAAG
Found at i:17861735 original size:54 final size:52
Alignment explanation
Indices: 17861612--17861740 Score: 150
Period size: 54 Copynumber: 2.4 Consensus size: 52
17861602 TTCAAAGCTC
* * *
17861612 TATTTTTAGAGATTGATTAGGATATTTTATAGGATTTATGACATATTTATGG
1 TATTTTAAGAGATTGATTAGGATATTCTATAGGATTTAAGACATATTTATGG
* ** * **
17861664 GATTTTAATTGATTGATTAGGATATTCTATAGGGTTTTAAGGGATATTTTATGG
1 TATTTTAAGAGATTGATTAGGATATTCTATA-GGATTTAAGACATA-TTTATGG
*
17861718 TATTTTAAGGGATTGATTAGGAT
1 TATTTTAAGAGATTGATTAGGAT
17861741 TTTATGGGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
52 26 0.41
53 10 0.16
54 27 0.43
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.47
Consensus pattern (52 bp):
TATTTTAAGAGATTGATTAGGATATTCTATAGGATTTAAGACATATTTATGG
Found at i:17888021 original size:47 final size:48
Alignment explanation
Indices: 17887935--17888027 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 48
17887925 CATCTTATTA
* *
17887935 GGAATAGAAAACCCAAAATGATCTTTTCTAATGGCCTTGTTTAACTAG
1 GGAATAGAAAACCCAAAATAATCTTTCCTAATGGCCTTGTTTAACTAG
* ** *
17887983 GGAA-AGAAAACCCAGAATAATCTTTCCTGGTGGTCTTGTTTAACT
1 GGAATAGAAAACCCAAAATAATCTTTCCTAATGGCCTTGTTTAACT
17888028 TCCTGTAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 35 0.90
48 4 0.10
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Consensus pattern (48 bp):
GGAATAGAAAACCCAAAATAATCTTTCCTAATGGCCTTGTTTAACTAG
Found at i:17891953 original size:22 final size:22
Alignment explanation
Indices: 17891919--17891962 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
17891909 CAAATTTATG
* *
17891919 AAAATTTATTATAAAAATAATT
1 AAAATTCAATATAAAAATAATT
**
17891941 AAAATTCAATATATTAATAATT
1 AAAATTCAATATAAAAATAATT
17891963 TAAGTGGAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTCAATATAAAAATAATT
Found at i:17896409 original size:26 final size:25
Alignment explanation
Indices: 17896356--17896416 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
17896346 CAATAATTTT
**
17896356 ATATATTATATAATAAAACCCATGC
1 ATATATTATATAATAAAACCCACAC
* *
17896381 ATATATGTATATAGTAAGACCCACAC
1 ATATAT-TATATAATAAAACCCACAC
*
17896407 ATATAATATA
1 ATATATTATA
17896417 ATTTATGTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.31
Consensus pattern (25 bp):
ATATATTATATAATAAAACCCACAC
Found at i:17897753 original size:13 final size:13
Alignment explanation
Indices: 17897735--17897785 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 13
17897725 ATTAATACCA
17897735 TAATTATTTATTT
1 TAATTATTTATTT
17897748 TAATTA-TTATTT
1 TAATTATTTATTT
* *
17897760 TTACTATTT-TTAAT
1 TAATTATTTATT--T
17897774 TAATTATTTATT
1 TAATTATTTATT
17897786 GTATCCTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
12 12 0.40
13 8 0.27
14 8 0.27
15 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (13 bp):
TAATTATTTATTT
Found at i:17898278 original size:31 final size:31
Alignment explanation
Indices: 17898242--17898308 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
17898232 GACGATTTTC
*
17898242 CTTTTCCTTCAAAGTATTTCTTTAGTTCTTT
1 CTTTTCCTTCAAAGTATTTCTTTAATTCTTT
*
17898273 GTTTTCCTTCAAAGTATTTCTTTAATTCTTT
1 CTTTTCCTTCAAAGTATTTCTTTAATTCTTT
17898304 CTTTT
1 CTTTT
17898309 TCTTAAGTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.16, C:0.18, G:0.06, T:0.60
Consensus pattern (31 bp):
CTTTTCCTTCAAAGTATTTCTTTAATTCTTT
Found at i:17899286 original size:22 final size:22
Alignment explanation
Indices: 17899228--17899335 Score: 80
Period size: 22 Copynumber: 5.0 Consensus size: 22
17899218 TACTCTAATT
*
17899228 TGGCCTTTAAGGCACATTTTGTTA
1 TGGCCTTTATGG--CATTTTGTTA
*
17899252 --GTCTTTATGGCATTTTGTTA
1 TGGCCTTTATGGCATTTTGTTA
*
17899272 TGGCCTTTATGGCATTCTGTTA
1 TGGCCTTTATGGCATTTTGTTA
* * ** *
17899294 --ACCTTTGTAACATTTTGATA
1 TGGCCTTTATGGCATTTTGTTA
* *
17899314 TGGCCTTTATGGAATTATGTTA
1 TGGCCTTTATGGCATTTTGTTA
17899336 AATTTGTGGC
Statistics
Matches: 63, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
20 24 0.38
22 39 0.62
ACGTcount: A:0.20, C:0.14, G:0.19, T:0.46
Consensus pattern (22 bp):
TGGCCTTTATGGCATTTTGTTA
Found at i:17905871 original size:67 final size:67
Alignment explanation
Indices: 17905799--17905931 Score: 248
Period size: 67 Copynumber: 2.0 Consensus size: 67
17905789 GTTTTAAACA
*
17905799 ATTAATATAATATTAAAATTAATTAAATAAATTAAACATGTGTATATAAAATATAAGTATGCGAA
1 ATTAATATAATATTAAAATTAATTAAATAAATTAAACATGTATATATAAAATATAAGTATGCGAA
17905864 AG
66 AG
*
17905866 ATTAATATAATTTTAAAATTAATTAAATAAATTAAACATGTATATATAAAATATAAGTATGCGAA
1 ATTAATATAATATTAAAATTAATTAAATAAATTAAACATGTATATATAAAATATAAGTATGCGAA
17905931 A
66 A
17905932 ATTTTAGTAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (67 bp):
ATTAATATAATATTAAAATTAATTAAATAAATTAAACATGTATATATAAAATATAAGTATGCGAA
AG
Found at i:17906585 original size:22 final size:21
Alignment explanation
Indices: 17906550--17906626 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 21
17906540 AAAGGGTATC
* *
17906550 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
17906571 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
17906594 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
17906613 TATATATCATATCT
1 TACAAATCATATCT
17906627 AAGACTGCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
19 16 0.36
21 4 0.09
22 15 0.34
23 9 0.20
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:17906612 original size:19 final size:19
Alignment explanation
Indices: 17906588--17906696 Score: 155
Period size: 19 Copynumber: 5.7 Consensus size: 19
17906578 TCATATCTTT
17906588 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
**
17906607 TAAGATTATATATCATATC
1 TAAGATTGCATATCATATC
* *
17906626 TAAGACTGCATATTATATC
1 TAAGATTGCATATCATATC
** *
17906645 TAAGATTATATATTATATC
1 TAAGATTGCATATCATATC
17906664 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
17906683 TAAGATTGCATATC
1 TAAGATTGCATATC
17906697 CCTGAAGATT
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 78 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:17906636 original size:38 final size:38
Alignment explanation
Indices: 17906588--17906689 Score: 177
Period size: 38 Copynumber: 2.7 Consensus size: 38
17906578 TCATATCTTT
17906588 TAAGATTGCATATCATATCTAAGATTATATATCATATC
1 TAAGATTGCATATCATATCTAAGATTATATATCATATC
* * *
17906626 TAAGACTGCATATTATATCTAAGATTATATATTATATC
1 TAAGATTGCATATCATATCTAAGATTATATATCATATC
17906664 TAAGATTGCATATCATATCTAAGATT
1 TAAGATTGCATATCATATCTAAGATT
17906690 GCATATCCCT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (38 bp):
TAAGATTGCATATCATATCTAAGATTATATATCATATC
Found at i:17907248 original size:132 final size:131
Alignment explanation
Indices: 17907023--17908311 Score: 1994
Period size: 132 Copynumber: 9.8 Consensus size: 131
17907013 TAGGACTTAC
17907023 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
17907088 AACCACAGAGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAG-GAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
17907153 GA
130 GA
*
17907155 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* * * *
17907220 AACCACAGGAAGGTAAAATCCG-CGATCTTTGATCTGCTCCACTATTGCTTAGGGAAATAAGACC
66 AACCACAGG-AGGTAAAATCCGTC-ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
17907284 TGA
129 TGA
* * *
17907287 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATTTACTGCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* *
17907352 AACCACATGGAGGTAAAATCCGTCATTTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCT
66 AACCACA-GGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
17907417 GA
130 GA
* * * * *
17907419 ATTCTTCAATCTATTCCACGGTTG-CCTAGGGAAGTAGAATTACTGGCTTCAATTTACTGCACTG
1 AATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
* *
17907483 TAACCACATGGAGGTAAAATCCGTCATTTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATC
65 TAACCACA-GGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
17907548 TGA
129 TGA
* * * * *
17907551 ATTCTTCAATCTATTCCACGGTTG-CCTAGGGAAGTAGAATTACTGGCTTCAATTTACTGCACTG
1 AATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
* *
17907615 TAACCACATGGAGGTAAAATCCGTCATTTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATC
65 TAACCACA-GGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
17907680 TGA
129 TGA
* * * * *
17907683 ATTCTTCAATCTATTCCACGGTTG-CCTAGGGAAGTAGAATTACTGGCTTCAATTTACTGCACTG
1 AATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
* *
17907747 TAACCACATGGAGGTAAAATCCGTCATTTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATC
65 TAACCACA-GGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
17907812 TGA
129 TGA
* *
17907815 ATTCTTCAATCTATTCCACGGTTG-CCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
1 AATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
* *
17907879 TAACCACAGGGAGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
65 TAACCACA-GGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
17907944 TGA
129 TGA
*
17907947 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGACTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* **
17908012 AACCATAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACA-GGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
17908077 GA
130 GA
*
17908079 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGACTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* **
17908144 AACCATAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACA-GGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
17908209 GA
130 GA
*
17908211 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGACTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
**
17908276 AACCACAGGGAGGTAAAATCCACCATCTTCGATCTG
66 AACCACA-GGAGGTAAAATCCGTCATCTTCGATCTG
17908312 TTTCGCTGTC
Statistics
Matches: 1121, Mismatches: 30, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
131 4 0.00
132 1112 0.99
133 5 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (131 bp):
AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
AACCACAGGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
A
Found at i:17907952 original size:44 final size:44
Alignment explanation
Indices: 17907904--17908230 Score: 137
Period size: 44 Copynumber: 7.4 Consensus size: 44
17907894 AAAATTCGCC
* *
17907904 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* ** *
17907948 ATCTTCAATCTATTCCACTGTTG-TCCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCT-TAGGGAGA-TAAG-A-T-CTGAA
* * * * * * *
17907992 A-CTTCAATGTACTCCACTA-TAACCATAGGGAGGTAAAATC-CACC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGA-A
* *
17908036 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* ** *
17908080 ATCTTCAATCTATTCCACTGTTG-TCCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCT-TAGGGAGA-TAAG-A-T-CTGAA
* * * * * * *
17908124 A-CTTCAATGTACTCCACTA-TAACCATAGGGAGGTAAAATC-CACC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGA-A
* *
17908168 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
*
17908212 ATCTTCAATCTATTCCACT
1 ATCTTCAATCTACTCCACT
17908231 GTTGTCCAGG
Statistics
Matches: 200, Mismatches: 51, Indels: 64
0.63 0.16 0.20
Matches are distributed among these distances:
42 4 0.02
43 40 0.20
44 112 0.56
45 36 0.18
46 8 0.04
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
Found at i:17914665 original size:98 final size:98
Alignment explanation
Indices: 17914449--17914643 Score: 381
Period size: 98 Copynumber: 2.0 Consensus size: 98
17914439 AATATACTTG
17914449 TACACATAAAAAAATACATAAGTTTTAAACAATTAATATAATTTTAAAATTAATTAAATAAATTA
1 TACACATAAAAAAATACATAAGTTTTAAACAATTAATATAATTTTAAAATTAATTAAATAAATTA
17914514 AACATGTATATATAAAATATAAGTATGCGAAAA
66 AACATGTATATATAAAATATAAGTATGCGAAAA
17914547 TACACATAAAAAAATACATAAGTTTTAAACAATTAATATAATTTTAAAATTAATTAAATAAATTA
1 TACACATAAAAAAATACATAAGTTTTAAACAATTAATATAATTTTAAAATTAATTAAATAAATTA
*
17914612 AACATGTGTATATAAAATATAAGTATGCGAAA
66 AACATGTATATATAAAATATAAGTATGCGAAA
17914644 GTTTTAGTAT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (98 bp):
TACACATAAAAAAATACATAAGTTTTAAACAATTAATATAATTTTAAAATTAATTAAATAAATTA
AACATGTATATATAAAATATAAGTATGCGAAAA
Found at i:17915298 original size:22 final size:21
Alignment explanation
Indices: 17915263--17915358 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 21
17915253 AAAGGGTATC
* *
17915263 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
17915284 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
17915307 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
17915326 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
17915345 TGCATATCATATCT
1 TACAAATCATATCT
17915359 AAGATTGCAT
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
17 2 0.03
19 26 0.43
21 7 0.12
22 15 0.25
23 10 0.17
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:17915306 original size:23 final size:22
Alignment explanation
Indices: 17915263--17915320 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
17915253 AAAGGGTATC
* *
17915263 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
17915284 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
17915307 TGCATATCATATCT
1 TACAAATCATATCT
17915321 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:17915323 original size:19 final size:19
Alignment explanation
Indices: 17915299--17915371 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
17915289 AATCATATCT
17915299 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
17915318 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
17915337 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
17915356 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
17915372 CCTGAAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:17916878 original size:3 final size:3
Alignment explanation
Indices: 17916870--17916921 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
17916860 AAAACAATTA
*
17916870 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
17916918 TCT T
1 TCT T
17916922 TCTTTTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:17918470 original size:22 final size:22
Alignment explanation
Indices: 17918431--17918516 Score: 93
Period size: 22 Copynumber: 3.8 Consensus size: 22
17918421 TTCTTCTTTC
*
17918431 AGAGAATATTCACTGTTCAAGCT
1 AGAGAAT-TTTACTGTTCAAGCT
*
17918454 AGATAATTTTACTGTTCAAGCT
1 AGAGAATTTTACTGTTCAAGCT
* *
17918476 AGAGAATTTTATTGTTCATCGC-
1 AGAGAATTTTACTGTTCA-AGCT
*
17918498 AGAGAATCTTCACTGTTCA
1 AGAGAAT-TTTACTGTTCA
17918517 TTCTCATTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
22 37 0.69
23 17 0.31
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (22 bp):
AGAGAATTTTACTGTTCAAGCT
Found at i:17929337 original size:105 final size:108
Alignment explanation
Indices: 17929144--17929340 Score: 301
Period size: 105 Copynumber: 1.9 Consensus size: 108
17929134 AAAAATAATA
* * *
17929144 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATTTGCTGGGTTTCGATTTTTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATATTTC
*
17929209 TCGTTCAACCAAATAGCCGAATATCCTTCCAAAAATTCCAAAT
66 TCGTTCAACCAAATAGCCAAATATCCTTCCAAAAATTCCAAAT
* *
17929252 AAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTTC-A-ATTTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATATTTC
* *
17929314 TCGTTTAACTAAATAGCCAAATATCCT
66 TCGTTCAACCAAATAGCCAAATATCCT
17929341 CTTGAATTTC
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
105 28 0.35
106 1 0.01
107 24 0.30
108 28 0.35
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (108 bp):
AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATATTTC
TCGTTCAACCAAATAGCCAAATATCCTTCCAAAAATTCCAAAT
Found at i:17935168 original size:86 final size:87
Alignment explanation
Indices: 17934987--17935688 Score: 797
Period size: 86 Copynumber: 8.1 Consensus size: 87
17934977 GATCAGTGAG
* * * * *
17934987 GATC-AAAGACAAAGCCTTGCCTCCATCGATCGCAGTGGAGCTGGTTGAAGATAGTAGATCTTGC
1 GATCGAAA-ACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTGC
17935051 CTTCCTGCGTTAACAGCGAAGCA
65 CTTCCTGCGTTAACAGCGAAGCA
* * *
17935074 GATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGA-ACCTGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTGCC
* * *
17935138 TTCCTACATTAACAGAGAAGCA
66 TTCCTGCGTTAACAGCGAAGCA
* * * * * *
17935160 GATCGAAAACAAAGCCTTGCCTCCCTCGGTCGCAGTCGAGCTAGTTGAAGATAGCAGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTGCC
* * *
17935225 TTACTGTGTTAACAGCGAAACA
66 TTCCTGCGTTAACAGCGAAGCA
*
17935247 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTGCC
** *
17935311 TTCCTATGTTAACAGCGAAGAA
66 TTCCTGCGTTAACAGCGAAGCA
* * * *
17935333 GATCGAAAATAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGGTCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTGCC
17935397 TTCCTGCGTTAACAGCGAAGCA
66 TTCCTGCGTTAACAGCGAAGCA
* * * *
17935419 GATCAAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTGCC
* * *
17935484 TTCCTGCCTTGACAACGAAGCA
66 TTCCTGCGTTAACAGCGAAGCA
* ** * * *
17935506 GATCGAAGACACAAA-CCTTGCCTCTC-TCGGTTGTAGCAGAGCTGGTTGAAGACAACATATCTT
1 GATCGAA-A-ACAAAGCCTTGCCTC-CATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTT
* * *
17935569 GCCTTCCTGCATTGACAGTGAAGCA
63 GCCTTCCTGCGTTAACAGCGAAGCA
* * * * * * * * *
17935594 TATCGAAGACACAAA-ACTTTCCTCCCTCAGTTGTAGTGGAGCTGGTTGAGGACAACAGATCTTG
1 GATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTG
* * *
17935658 CCTTCCTGCATTGACAGCGAAGTA
64 CCTTCCTGCGTTAACAGCGAAGCA
17935682 GATCGAA
1 GATCGAA
17935689 GTTACAAATC
Statistics
Matches: 538, Mismatches: 70, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
86 230 0.43
87 152 0.28
88 150 0.28
89 6 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (87 bp):
GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGACAGCAGATCTTGCC
TTCCTGCGTTAACAGCGAAGCA
Found at i:17935286 original size:173 final size:175
Alignment explanation
Indices: 17934987--17935688 Score: 814
Period size: 173 Copynumber: 4.0 Consensus size: 175
17934977 GATCAGTGAG
* * * *
17934987 GATC-AAAGACAAAGCCTTGCCTCCATCGATCGCAGTGGAGCTGGTTGAAGATAGTAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
*
17935051 CTTCCTGCGTTAACAGCGAAGCAGATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
* *
17935116 GGTTAAAGA-ACCTGATCTTGCCTTCCTACATTAACAGAGAAGCA
131 GGTTAAAGACAACAGATCTTGCCTTCCTACATTAACAGAGAAGCA
* *
17935160 GATCGAAA-ACAAAGCCTTGCCTCCCTCGGTCGCAGTCGAGCTAGTTGAAGATAGCAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
* * * *
17935224 CTTACTGTGTTAACAGCGAAACAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
* ** * *
17935289 GGTTAAAGA-AGCAGATCTTGCCTTCCTATGTTAACAGCGAAGAA
131 GGTTAAAGACAACAGATCTTGCCTTCCTACATTAACAGAGAAGCA
* * * * * * *
17935333 GATCGAAA-ATAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGGTCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
* *
17935396 CTTCCTGCGTTAACAGCGAAGCAGATCAAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
* * * *
17935461 GGTTGAAGACAACAGATCTTGCCTTCCTGCCTTGACA-ACGAAGCA
131 GGTTAAAGACAACAGATCTTGCCTTCCTACATTAACAGA-GAAGCA
* * * * *
17935506 GATCGAAGACACAAA-CCTTGCCTCTC-TCGGTTGTAG-CAGAGCTGGTTGAAGACAACATATCT
1 GATCGAA-ACACAAAGCCTTGCCTC-CATCGGTCGCAGTC-GAGCTGGTTGAAGATAGCAGATCT
* * * * * * * * *
17935568 TGCCTTCCTGCATTGACAGTGAAGCATATCGAAGACACAAA-ACTTTCCTCCCTCAGTTGTAGTG
63 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGCAGTG
* * * * * *
17935632 GAGCTGGTTGAGGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGTA
126 GAGCTGGTTAAAGACAACAGATCTTGCCTTCCTACATTAACAGAGAAGCA
17935682 GATCGAA
1 GATCGAA
17935689 GTTACAAATC
Statistics
Matches: 458, Mismatches: 60, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
172 78 0.17
173 230 0.50
174 35 0.08
175 39 0.09
176 71 0.16
177 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (175 bp):
GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
GGTTAAAGACAACAGATCTTGCCTTCCTACATTAACAGAGAAGCA
Found at i:17935309 original size:43 final size:42
Alignment explanation
Indices: 17935262--17935397 Score: 102
Period size: 43 Copynumber: 3.2 Consensus size: 42
17935252 AAAACAAAGC
17935262 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGAT
1 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAG-T
** * * * * *
17935305 CTTGCCTTCCTAT--GTTAACAGCGAAGAAGATCG-AAAATAA--AGT
1 CTTGCC-TCC-ATCGGTT-GTAGTG--G-AGCTGGTTAAAGAAGCAGT
17935348 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGGT
1 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCA-GT
17935391 CTTGCCT
1 CTTGCCT
17935398 TCCTGCGTTA
Statistics
Matches: 67, Mismatches: 14, Indels: 24
0.64 0.13 0.23
Matches are distributed among these distances:
39 4 0.06
40 6 0.09
41 2 0.03
42 7 0.10
43 28 0.42
44 8 0.12
45 2 0.03
46 6 0.09
47 4 0.06
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (42 bp):
CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGT
Found at i:17935468 original size:259 final size:261
Alignment explanation
Indices: 17934987--17935685 Score: 852
Period size: 259 Copynumber: 2.7 Consensus size: 261
17934977 GATCAGTGAG
* * * * * *
17934987 GATC-AAAGACAAAGCCTTGCCTCCATCGATCGCAGTGGAGCTGGTTGAAGATAGTAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGC
* * *
17935051 CTTCCTGCGTTAACAGCGAAGCAGATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGACTTGCCTCCATCGGTTGTAGTGGAGCT
* * * * * *
17935116 GGTTAAAGAACCTGATCTTGCCTTCCTACATTAACAGAGAAGCAGATCGAAAACAAAGCCTTGCC
131 GGTTAAAGAAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCAAAAACAAAACCTTGCC
* * * ** *
17935181 TCCCTCGGTCGCAGTCGAGCTAGTTGAAGATAGCAGATCTTGCCTTACTGTGTTAACAGCGAAAC
196 TCCATCGGTCGCAGTCGAGCTAGTTGAAGACAACAGATCTTGCCTTACTGCCTTAACAACGAAAC
17935246 A
261 A
*
17935247 GATCGAAA-ACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGC
** * * *
17935310 CTTCCTATGTTAACAGCGAAGAAGATCGAAAATAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGACTTGCCTCCATCGGTTGTAGTGGAGCT
* * *
17935375 GGTTAAAGAAGCAGGTCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAAACAAAACCTTGCC
131 GGTTAAAGAAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCAAAAACAAAACCTTGCC
* * * * * *
17935440 TCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCCTTGACAACGAAGC
196 TCCATCGGTCGCAGTCGAGCTAGTTGAAGACAACAGATCTTGCCTTACTGCCTTAACAACGAAAC
17935505 A
261 A
** * *
17935506 GATCGAAGACACAAA-CCTTGCCTCTC-TCGGTTGTAGCAGAGCTGGTTGAAGACAACATATCTT
1 GATCGAA-ACACAAAGCCTTGCCTC-CATCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTT
* * * * * * *
17935569 GCCTTCCTGCATTGACAGTGAAGCATATCGAAGACACAAA-ACTTTCCTCCCTCAGTTGTAGTGG
64 GCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-ACAAAGACTTGCCTCCATCGGTTGTAGTGG
* * * *
17935633 AGCTGGTTGAGGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATC
127 AGCTGGTTAAAGA-AACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATC
17935686 GAAGTTACAA
Statistics
Matches: 375, Mismatches: 56, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
259 187 0.50
260 76 0.20
261 42 0.11
262 32 0.09
263 38 0.10
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (261 bp):
GATCGAAACACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGACTTGCCTCCATCGGTTGTAGTGGAGCT
GGTTAAAGAAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCAAAAACAAAACCTTGCC
TCCATCGGTCGCAGTCGAGCTAGTTGAAGACAACAGATCTTGCCTTACTGCCTTAACAACGAAAC
A
Found at i:17935840 original size:132 final size:131
Alignment explanation
Indices: 17935697--17936064 Score: 472
Period size: 132 Copynumber: 2.8 Consensus size: 131
17935687 AAGTTACAAA
* * * * *
17935697 TCCTATCTCCCTGGCCAGCAGTGGAATAGGTTGGAA-ATTGTAGGTCTTGTCTCCCTAAGTAGTA
1 TCCTATCTCCCTAG-TAGTAGTGGAATAGGTT-GAAGATTGTAGATCTTGTCTCCCTAAGCAGTA
* * *
17935761 GCGGAGCAGATCGAAGATGTTGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGTCAT
64 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCAT
17935826 TAG
129 TAG
** * * *
17935829 TTTTATCTCCCTTAGTAGTAGTGGAGTAGGTTGAAGATTGCAGAATC-TGTCACCCTAAGCAGTA
1 TCCTATCTCCC-TAGTAGTAGTGGAATAGGTTGAAGATTGTAG-ATCTTGTCTCCCTAAGCAGTA
*
17935893 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGTAGATTTAAGCCAT
64 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCAT
17935958 TAG
129 TAG
* ** *
17935961 TCCTATCTCCCTAAGTAGTAGTGGAATATGTCAAAGATTGTAGAT-TCTGTATCCCTAAGCAGTA
1 TCCTATCTCCCT-AGTAGTAGTGGAATAGGTTGAAGATTGTAGATCT-TGTCTCCCTAAGCAGTA
* * *
17936025 GTGGAGCAGAACAAAGACGGTGAATCTTATCTTCCCAAGA
64 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGA
17936065 TAGTAGGGAA
Statistics
Matches: 204, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
131 6 0.03
132 194 0.95
133 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (131 bp):
TCCTATCTCCCTAGTAGTAGTGGAATAGGTTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTA
G
Found at i:17936076 original size:132 final size:133
Alignment explanation
Indices: 17935744--17936084 Score: 474
Period size: 132 Copynumber: 2.6 Consensus size: 133
17935734 TTGTAGGTCT
* * *
17935744 TGTC-TCCCTAAGTAGTAGCGGAGCAGATCGAAGATGTTGAATCTTATCTTCCCAAGACAGTGGA
1 TGTCATCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGA
* * ** * * **
17935808 GAAGCAGATTTAAGTCATTAGTTTTATCTCCCTTAGTAGTAGTGGAGTAGGTTGAAGATTGCAGA
66 GAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAATAGGTCAAAGATTGCAGA
17935873 ATC
131 ATC
17935876 TGTCA-CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGA
1 TGTCATCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGA
* *
17935940 GAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAATATGTCAAAGATTGTAGA
66 GAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAATAGGTCAAAGATTGCAGA
*
17936005 TTC
131 ATC
* * * *
17936008 TGT-ATCCCTAAGCAGTAGTGGAGCAGAACAAAGACGGTGAATCTTATCTTCCCAAGATAGTAGG
1 TGTCATCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGT-GG
*
17936072 -GAAGTAAATTTAA
65 AGAAGTAGATTTAA
17936085 ACTACAAACA
Statistics
Matches: 187, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
131 1 0.01
132 184 0.98
133 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (133 bp):
TGTCATCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGA
GAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAATAGGTCAAAGATTGCAGA
ATC
Found at i:17938343 original size:107 final size:106
Alignment explanation
Indices: 17938116--17938313 Score: 301
Period size: 105 Copynumber: 1.9 Consensus size: 106
17938106 AAAAATAATA
* * *
17938116 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTC
1 AAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA-TTTTC
*
17938181 TCATTCAACCAAATAGCCGAATATCCTGCCAAAAATTTCAAAT
65 TCATTCAACCAAATAGCCAAATATCCT-CCAAAAATTTCAAAT
*
17938224 AAGGCAATGTTTTACGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTTCGA-TTTCT
1 AAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
* *
17938287 CGTTTAACCAAATAGCCAAATATCCTC
66 CATTCAACCAAATAGCCAAATATCCTC
17938314 TTGAATTTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
104 1 0.01
105 28 0.34
107 27 0.33
108 27 0.33
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (106 bp):
AAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
CATTCAACCAAATAGCCAAATATCCTCCAAAAATTTCAAAT
Found at i:17948617 original size:18 final size:18
Alignment explanation
Indices: 17948594--17948633 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
17948584 CTCACAATAC
17948594 ACAGTTTGACAAATTAAT
1 ACAGTTTGACAAATTAAT
* *
17948612 ACAGTTTGCCATATTAAT
1 ACAGTTTGACAAATTAAT
17948630 ACAG
1 ACAG
17948634 ATCACCGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (18 bp):
ACAGTTTGACAAATTAAT
Found at i:17952292 original size:43 final size:42
Alignment explanation
Indices: 17952237--17952347 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 42
17952227 TTTTAGAAAT
* * *
17952237 AAACGCCTCTAAAGGTCATGACTTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGGACATGACTTTTAGCGACGCTTTTT-CAC
* * *
17952280 AAACGCCGCTAAAGGCCAGGACCTTTAGCGACGCTTTTTCAC
1 AAACGCCGCTAAAGGACATGACTTTTAGCGACGCTTTTTCAC
*
17952322 AAACGCCGCTAAA-AACATGACTTTTA
1 AAACGCCGCTAAAGGACATGACTTTTA
17952348 AAAAAATTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 9 0.15
42 16 0.27
43 34 0.58
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (42 bp):
AAACGCCGCTAAAGGACATGACTTTTAGCGACGCTTTTTCAC
Found at i:17956162 original size:21 final size:21
Alignment explanation
Indices: 17956138--17956183 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
17956128 CCTTAAATCA
* * * *
17956138 TTAACTCTTAATCTCTAACCT
1 TTAACCCTTAACCCCTAACCC
17956159 TTAACCCTTAACCCCTAACCC
1 TTAACCCTTAACCCCTAACCC
17956180 TTAA
1 TTAA
17956184 ACATTATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.35, G:0.00, T:0.35
Consensus pattern (21 bp):
TTAACCCTTAACCCCTAACCC
Found at i:17956258 original size:130 final size:132
Alignment explanation
Indices: 17956064--17956310 Score: 293
Period size: 130 Copynumber: 1.9 Consensus size: 132
17956054 CTTAATTGAT
* * * * * * *
17956064 ATATAAATTAAAAAATACTAACTAATTTAAAGCTTAAACCTTAACCTGACCCCGAATCTCTAAAC
1 ATATAAATTAAAAAACACTAACTAATCTAAACCCTAAACCCTAACCTGACACCAAATCTCTAAAC
* * * **
17956129 CTTAAA-TCAT-TAACTCTTAATCTCTAACCTTTAACCCTTAACCCCTAACCCTTAAACATTATT
66 CCTAAATTAATCTAACTCTTAATCCCTAACCCCTAACCCTTAACCCCTAACCCTTAAACATTATT
17956192 TA
131 TA
* * * *
17956194 ATATAAATTAAAACACATTAATTAATCTAAACCCTAAACCCTAACTTGACACCAAATC-CATAAA
1 ATATAAATTAAAAAACACTAACTAATCTAAACCCTAAACCCTAACCTGACACCAAATCTC-TAAA
*
17956258 CCCTAAATTAATCCCTAACTCTTAATCCCTAACCCCTAACCCTTACCCCCTAA
65 CCCTAAATTAAT--CTAACTCTTAATCCCTAACCCCTAACCCTTAACCCCTAA
17956311 ATTACAACCC
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
129 1 0.01
130 57 0.60
131 3 0.03
134 34 0.36
ACGTcount: A:0.40, C:0.29, G:0.02, T:0.29
Consensus pattern (132 bp):
ATATAAATTAAAAAACACTAACTAATCTAAACCCTAAACCCTAACCTGACACCAAATCTCTAAAC
CCTAAATTAATCTAACTCTTAATCCCTAACCCCTAACCCTTAACCCCTAACCCTTAAACATTATT
TA
Found at i:17956308 original size:21 final size:21
Alignment explanation
Indices: 17956270--17956310 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
17956260 CTAAATTAAT
* *
17956270 CCCTAACTCTTAATCCCTAAC
1 CCCTAACCCTTAACCCCTAAC
*
17956291 CCCTAACCCTTACCCCCTAA
1 CCCTAACCCTTAACCCCTAA
17956311 ATTACAACCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.49, G:0.00, T:0.24
Consensus pattern (21 bp):
CCCTAACCCTTAACCCCTAAC
Found at i:17956910 original size:41 final size:41
Alignment explanation
Indices: 17956759--17956911 Score: 164
Period size: 41 Copynumber: 3.7 Consensus size: 41
17956749 AAATGTTTTT
* * * **
17956759 GCGGCGCTTTTTCAAAAGCGCCGCTAAATC-CCGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCTTTGAGCATTA
* * * **
17956799 GCAGCGCTTTTCCAAAAAACGCCACTAAAGCTTTAAGCGCTA
1 GCGGCGCTTTTCC-AAAAACGCCGCTAAAGCTTTGAGCATTA
* *
17956841 GCGACGCTTTTCCAAAAACGCTGCTAAAGCTTTGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCTTTGAGCATTA
* *
17956882 GCGGCGCTTTTTCAAAAACGCCGTTAAAGC
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGC
17956912 CTCGAAAGGT
Statistics
Matches: 90, Mismatches: 21, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
40 11 0.12
41 63 0.70
42 16 0.18
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAGCTTTGAGCATTA
Found at i:17957043 original size:40 final size:40
Alignment explanation
Indices: 17956949--17957078 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
17956939 TGGGCTTAGG
* * *
17956949 TTTTTTGCGGCGCTTTTCTAAACAA-CGCTGCTAATGCTC--
1 TTTTTAGCGGCGTTTTTC-AAA-AAGCGCCGCTAATGCTCGA
17956988 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
* * ** * *
17957028 TCTTTAGCGGTGTTTTTTGAAAAGCGCCTCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
17957068 TTTTTAGCGGC
1 TTTTTAGCGGC
17957079 AATTTTTATC
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
37 2 0.03
38 16 0.21
39 16 0.21
40 43 0.56
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
Found at i:17959332 original size:20 final size:20
Alignment explanation
Indices: 17959288--17959359 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
17959278 CTTTTATGGC
* * *
17959288 GCATTTTGTTAGCCTTTTTT
1 GCATTTTATTAGCCTTTGTG
*
17959308 TCATTTTATTAGCCTTTGTG
1 GCATTTTATTAGCCTTTGTG
*
17959328 GCATTTTGGATGA-CCTTTGTG
1 GCATTTT--ATTAGCCTTTGTG
*
17959349 GCATTCTATTA
1 GCATTTTATTA
17959360 AAATTTTGTG
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
19 3 0.07
20 22 0.52
21 14 0.33
22 3 0.07
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.51
Consensus pattern (20 bp):
GCATTTTATTAGCCTTTGTG
Found at i:17961949 original size:28 final size:28
Alignment explanation
Indices: 17961918--17961973 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
17961908 ATTCCAAAAG
17961918 AACACTATTAGGATAACATTAGATTTAT
1 AACACTATTAGGATAACATTAGATTTAT
17961946 AACACTATTAGGATAACATTAGATTTAT
1 AACACTATTAGGATAACATTAGATTTAT
17961974 GTAATTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.36
Consensus pattern (28 bp):
AACACTATTAGGATAACATTAGATTTAT
Found at i:17962519 original size:14 final size:14
Alignment explanation
Indices: 17962500--17962547 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
17962490 TAAGTTAAAA
17962500 ATAATATAAAATTT
1 ATAATATAAAATTT
*
17962514 ATAATATATAACCTTT
1 ATAATATA-AA-ATTT
* *
17962530 ATAAAAAAAAATTT
1 ATAATATAAAATTT
17962544 ATAA
1 ATAA
17962548 AGTGTCCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 15 0.54
15 4 0.14
16 9 0.32
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAATATAAAATTT
Found at i:17962524 original size:16 final size:15
Alignment explanation
Indices: 17962502--17962548 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
17962492 AGTTAAAAAT
17962502 AATATAAAATTTATA
1 AATATAAAATTTATA
**
17962517 ATATATAACCTTTATA
1 A-ATATAAAATTTATA
*
17962533 AA-AAAAAATTTATA
1 AATATAAAATTTATA
17962547 AA
1 AA
17962549 GTGTCCAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
14 11 0.42
15 2 0.08
16 13 0.50
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (15 bp):
AATATAAAATTTATA
Found at i:17963175 original size:4 final size:4
Alignment explanation
Indices: 17963161--17963190 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
17963151 ATTTTAAAAT
17963161 ATTA TATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA -ATTA ATTA ATTA ATTA ATTA ATTA A
17963191 CGAGAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:17969901 original size:12 final size:12
Alignment explanation
Indices: 17969884--17969908 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17969874 CAAATTTTAG
17969884 ATTTTAAAATTT
1 ATTTTAAAATTT
17969896 ATTTTAAAATTT
1 ATTTTAAAATTT
17969908 A
1 A
17969909 GAATTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTTAAAATTT
Found at i:17974057 original size:6 final size:6
Alignment explanation
Indices: 17974043--17974102 Score: 102
Period size: 6 Copynumber: 10.0 Consensus size: 6
17974033 GCAAATGGAT
*
17974043 CATTTC CATTCC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
*
17974091 CATCTC CATTTC
1 CATTTC CATTTC
17974103 AGAGAAAACC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.47
Consensus pattern (6 bp):
CATTTC
Found at i:17974483 original size:6 final size:6
Alignment explanation
Indices: 17974469--17974504 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
17974459 GCAAATGGAT
*
17974469 CATTTC CATTCC CATTTC CATTTC CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
17974505 AAAATGATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.36, G:0.00, T:0.47
Consensus pattern (6 bp):
CATTTC
Found at i:17974680 original size:426 final size:426
Alignment explanation
Indices: 17973887--17974954 Score: 2023
Period size: 426 Copynumber: 2.5 Consensus size: 426
17973877 TGAGGGCCTG
*
17973887 GTAAAATTTCAAGAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAACCAAATGGTT
1 GTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAACCAAATGGTT
17973952 TATTTTCATTTTCGAGCTTCAAAATAGTCCAAGAACTTAAACCTATTCTTTCTATCATTTTTAAG
66 TATTTTCATTTTCGAGCTTCAAAATAGTCCAAGAACTTAAACCTATTCTTTCTATCATTTTTAAG
* *
17974017 TAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCATTTCCATTTCCAT
131 TAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAA
*
17974082 TTCCATTTCCATCTCCATTTCAGAGAAAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTT
196 ATCCATTTCCATCTCCATTTCAGAGAAAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTT
17974147 CCTGTTCATTTCATTCATTTCTATTTAAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAAT
261 CCTGTTCATTTCATTCATTTCTATTTAAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAAT
17974212 AAACTTTAATATTTATATATAAAACAATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAAT
326 AAACTTTAATATTTATATATAAAACAATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAAT
17974277 TTTACCCTTAGTAAAATTTTGACGATTTTACCTCTA
391 TTTACCCTTAGTAAAATTTTGACGATTTTACCTCTA
17974313 GTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAACCAAATGGTT
1 GTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAACCAAATGGTT
17974378 TATTTTCATTTTCGAGCTTCAAAATAGTCCAAGAACTTAAACCTATTCTTTCTATCATTTTTAAG
66 TATTTTCATTTTCGAGCTTCAAAATAGTCCAAGAACTTAAACCTATTCTTTCTATCATTTTTAAG
17974443 TAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAA
131 TAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAA
*
17974508 AT-GA-TTCCATTTCTCCATTTCAGAGAAAACCATAATAACTCCTAAATGTTTCTCATTTCCCTT
196 ATCCATTTCCA--TCTCCATTTCAGAGAAAACCATAATAACTCCTAAATGTTTCTCATTTCCCTT
17974571 TTCCTGTTCATTTCATTCATTTCTATTTAAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAA
259 TTCCTGTTCATTTCATTCATTTCTATTTAAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAA
17974636 ATAAACTTTAATATTTATATATAAAACAATTTTCATCCCTATTTTACCCTAACAAAATTTTAATA
324 ATAAACTTTAATATTTATATATAAAACAATTTTCATCCCTATTTTACCCTAACAAAATTTTAATA
17974701 ATTTTACCCTTAGTAAAATTTTGACGATTTTACCTCTA
389 ATTTTACCCTTAGTAAAATTTTGACGATTTTACCTCTA
17974739 GTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAACCAAATGGTT
1 GTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAACCAAATGGTT
17974804 TATTTTCATTTTCGAGCTTCAAAATAGTCCAAGAACTTAAACCTATTCTTTCTATCATTTTTAAG
66 TATTTTCATTTTCGAGCTTCAAAATAGTCCAAGAACTTAAACCTATTCTTTCTATCATTTTTAAG
* *
17974869 TAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCATTTCCATTTCCAT
131 TAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAA
* *
17974934 TTCCATTTCCATTTCCATTTC
196 ATCCATTTCCATCTCCATTTC
17974955 CATTTCCATT
Statistics
Matches: 628, Mismatches: 10, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
424 5 0.01
425 1 0.00
426 616 0.98
427 1 0.00
428 5 0.01
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (426 bp):
GTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAACCAAATGGTT
TATTTTCATTTTCGAGCTTCAAAATAGTCCAAGAACTTAAACCTATTCTTTCTATCATTTTTAAG
TAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAA
ATCCATTTCCATCTCCATTTCAGAGAAAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTT
CCTGTTCATTTCATTCATTTCTATTTAAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAAT
AAACTTTAATATTTATATATAAAACAATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAAT
TTTACCCTTAGTAAAATTTTGACGATTTTACCTCTA
Found at i:17974909 original size:6 final size:6
Alignment explanation
Indices: 17974895--17974972 Score: 147
Period size: 6 Copynumber: 13.0 Consensus size: 6
17974885 GCAAATGGAT
*
17974895 CATTTC CATTCC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
17974943 CATTTC CATTTC CATTTC CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC
17974973 AAAATGATTC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.17, C:0.35, G:0.00, T:0.49
Consensus pattern (6 bp):
CATTTC
Found at i:17974980 original size:468 final size:469
Alignment explanation
Indices: 17974469--17975395 Score: 1680
Period size: 468 Copynumber: 2.0 Consensus size: 469
17974459 GCAAATGGAT
17974469 CATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAAATGATTCCATTTCTCCATTTCAGAGA
1 CATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAAATGATTCCATTTCTCCATTTCAGAGA
17974534 AAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTTCCTGTTCATTTCATTCATTTCTATTT
66 AAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTTCCTGTTCATTTCATTCATTTCTATTT
17974599 AAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAATAAACTTTAATATTTATATATAAAACA
131 AAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAATAAACTTTAATATTTATATATAAAACA
17974664 ATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAATTTTACCCTTAGTAAAATTTTGACGAT
196 ATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAATTTTACCCTTAGTAAAATTTTGACGAT
* *
17974729 TTTACCTCTAGTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAATATGTTCACTATAA
261 TTTACCTCTAGTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAACATATTCACTATAA
* * *
17974794 CCAAATGGTTTATTTTCATTTTCGA-GCTTCAAAATAGTCCAAGAACTTAAAC-CTATTCTTTCT
326 CCAAATGGTTTATTTTCATTTT-GAGGCTTCAAAATAGTCCAAAAACATAAACTC-ATTCTTCCT
* *
17974857 ATCA-TTTTTAAGTAATCCATATAGGATTGCAAATGGATCATTTCCATTCCCATTTCCATTTCCA
389 ATCATTTTTTAAGTAATCCATATAGGATTGCAAATGAATAATTTCCATTCCCATTTCCATTTCCA
17974921 TTTCCATTTCCATTTC
454 TTTCCATTTCCATTTC
*
17974937 CATTTCCATTTCCATTTCCATTTCCATTTCCATTTCAAAATGATTCCATTTCTCCATTTCAGAGA
1 CATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAAATGATTCCATTTCTCCATTTCAGAGA
17975002 AAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTTCCTGTTCATTTCATTCATTTCTATTT
66 AAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTTCCTGTTCATTTCATTCATTTCTATTT
17975067 AAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAATAAACTTTAATATTTATATATAAAACA
131 AAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAATAAACTTTAATATTTATATATAAAACA
17975132 ATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAATTTTACCCTTAGTAAAATTTTGACGAT
196 ATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAATTTTACCCTTAGTAAAATTTTGACGAT
17975197 TTTACCTCTAGTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAACATATTCACTATAA
261 TTTACCTCTAGTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAACATATTCACTATAA
** *
17975262 CTGAATGGTTTATTTTCATTTTTAGGCTTCAAAATAGTCCAAAAACATAAACTCATTCTTCCTAT
326 CCAAATGGTTTATTTTCATTTTGAGGCTTCAAAATAGTCCAAAAACATAAACTCATTCTTCCTAT
** * *
17975327 CATTTTTTAAGTAATCCATATAGGATTGCAAATGAATAATTTCCATTTTCATTTTCATTTTCATT
391 CATTTTTTAAGTAATCCATATAGGATTGCAAATGAATAATTTCCATTCCCATTTCCATTTCCATT
17975392 TCCA
456 TCCA
17975396 AATGATTTCA
Statistics
Matches: 441, Mismatches: 15, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
467 1 0.00
468 379 0.86
469 61 0.14
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (469 bp):
CATTTCCATTCCCATTTCCATTTCCATTTCCATTTCAAAATGATTCCATTTCTCCATTTCAGAGA
AAACCATAATAACTCCTAAATGTTTCTCATTTCCCTTTTCCTGTTCATTTCATTCATTTCTATTT
AAGTTCACAATTTATTTTTGTTTTTCTATTTCCTAAAATAAACTTTAATATTTATATATAAAACA
ATTTTCATCCCTATTTTACCCTAACAAAATTTTAATAATTTTACCCTTAGTAAAATTTTGACGAT
TTTACCTCTAGTAAAATTTCAAAAAAATATGTTCAATATTTCACAACTCAACATATTCACTATAA
CCAAATGGTTTATTTTCATTTTGAGGCTTCAAAATAGTCCAAAAACATAAACTCATTCTTCCTAT
CATTTTTTAAGTAATCCATATAGGATTGCAAATGAATAATTTCCATTCCCATTTCCATTTCCATT
TCCATTTCCATTTC
Found at i:17975385 original size:12 final size:12
Alignment explanation
Indices: 17975365--17975395 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
17975355 CAAATGAATA
17975365 ATTTCCATTTTC
1 ATTTCCATTTTC
*
17975377 ATTTTCATTTTC
1 ATTTCCATTTTC
17975389 ATTTCCA
1 ATTTCCA
17975396 AATGATTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTTCCATTTTC
Found at i:17979217 original size:22 final size:21
Alignment explanation
Indices: 17979190--17979230 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
17979180 ATTGTTATTG
*
17979190 TTATTAAATTTTAATATAATTA
1 TTATTAAATTATAA-ATAATTA
17979212 TTATTAAATTATAAATAAT
1 TTATTAAATTATAAATAAT
17979231 AAATAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTATTAAATTATAAATAATTA
Found at i:17986921 original size:22 final size:22
Alignment explanation
Indices: 17986893--17986940 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
17986883 TGATTGATTA
*
17986893 GGATATTCTATAGG-GTTTTAAG
1 GGATATTCTAT-GGTATTTTAAG
*
17986915 GGATATTTTATGGTATTTTAAG
1 GGATATTCTATGGTATTTTAAG
17986937 GGAT
1 GGAT
17986941 TGATTAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (22 bp):
GGATATTCTATGGTATTTTAAG
Found at i:17986945 original size:54 final size:52
Alignment explanation
Indices: 17986822--17986950 Score: 150
Period size: 54 Copynumber: 2.4 Consensus size: 52
17986812 TTCAAAGCTC
* * *
17986822 TATTTTTAGAGATTGATTAGGATATTTTATAGGATTTATGACATATTTATGG
1 TATTTTAAGAGATTGATTAGGATATTCTATAGGATTTAAGACATATTTATGG
* ** * **
17986874 GATTTTAATTGATTGATTAGGATATTCTATAGGGTTTTAAGGGATATTTTATGG
1 TATTTTAAGAGATTGATTAGGATATTCTATA-GGATTTAAGACATA-TTTATGG
*
17986928 TATTTTAAGGGATTGATTAGGAT
1 TATTTTAAGAGATTGATTAGGAT
17986951 TTTATGGGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
52 26 0.41
53 10 0.16
54 27 0.43
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.47
Consensus pattern (52 bp):
TATTTTAAGAGATTGATTAGGATATTCTATAGGATTTAAGACATATTTATGG
Found at i:17999971 original size:55 final size:53
Alignment explanation
Indices: 17999835--18000033 Score: 213
Period size: 55 Copynumber: 3.7 Consensus size: 53
17999825 TTTCCTTTTT
* * * *
17999835 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGT-GGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATAGG-A-CCTTGCCTTATA
* * *
17999888 GAACTCACCAATGCCATACCTTGGCATGGACTTACATAGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATAGGACC-TTGCCTTATA
* * ***
17999942 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACAT-AGGACCTTGCCTTATA
* *
17999997 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACAT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACAT
18000034 GATATCCTTA
Statistics
Matches: 122, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 40 0.33
54 35 0.29
55 42 0.34
56 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATAGGACCTTGCCTTATA
Found at i:18000075 original size:47 final size:47
Alignment explanation
Indices: 18000021--18000138 Score: 209
Period size: 47 Copynumber: 2.5 Consensus size: 47
18000011 CATGCCTTGG
* *
18000021 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
18000068 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
18000115 CATGGTCTTACATGGTATCCTTAT
1 CATGGTCTTACATGGTATCCTTAT
18000139 ATTAGTGCCA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:18000184 original size:48 final size:47
Alignment explanation
Indices: 18000114--18000278 Score: 133
Period size: 47 Copynumber: 3.5 Consensus size: 47
18000104 CATGTTCCAA
*
18000114 ACATGGTCTTACATGGTATCCTTATATTAGTGCCAATACCACATCTTG
1 ACATGGTCTTACATGGTATCCTTA-ATTAATGCCAATACCACATCTTG
** * * **
18000162 ATGTGGTCTTACATGG-AGTCCTTAATTAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGTA-TCCTTAATTAATGCCAATACCACATCTTG
* ** * **
18000209 ACATGGTCTTACACAGG-ATCCTTGCCTT-A--CCAATGCCATGTCTTG
1 ACATGGTCTTACA-TGGTATCCTT-AATTAATGCCAATACCACATCTTG
*
18000254 ACATGGTCTTACATAGTATCCTTAA
1 ACATGGTCTTACATGGTATCCTTAA
18000279 CCGTCAATTC
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
44 1 0.01
45 34 0.35
47 36 0.38
48 25 0.26
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTAATTAATGCCAATACCACATCTTG
Found at i:18000231 original size:47 final size:46
Alignment explanation
Indices: 18000114--18000278 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 46
18000104 CATGTTCCAA
* * * **
18000114 ACATGGTCTTACATGGTATCCTTATATTAGTGCCAATACCACATCTTG
1 ACATGGTCTTACAAGG-ATCCTTA-ATTAATGCCAATGCCATGTCTTG
** * *
18000162 ATGTGGTCTTACATGGAGTCCTTAATTAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACAAGGA-TCCTTAATTAATGCCAATGCCATGTCTTG
**
18000209 ACATGGTCTTACACAGGATCCTTGCCTT-A--CCAATGCCATGTCTTG
1 ACATGGTCTTACA-AGGATCCTT-AATTAATGCCAATGCCATGTCTTG
*
18000254 ACATGGTCTTACATAGTATCCTTAA
1 ACATGGTCTTACA-AGGATCCTTAA
18000279 CCGTCAATTC
Statistics
Matches: 97, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 36 0.37
47 36 0.37
48 25 0.26
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (46 bp):
ACATGGTCTTACAAGGATCCTTAATTAATGCCAATGCCATGTCTTG
Found at i:18006513 original size:194 final size:194
Alignment explanation
Indices: 18006184--18006566 Score: 730
Period size: 194 Copynumber: 2.0 Consensus size: 194
18006174 CATTCAAAAG
18006184 ATGCCATTTTCGCATGGCTTATATACATTAACCAAAAATATTCTTCCGCCACTAGCCTATTCTAT
1 ATGCCATTTTCGCATGGCTTATATACATTAACCAAAAATATTCTTCCGCCACTAGCCTATTCTAT
* *
18006249 ACATGCCATAAAATAATTCTAAACATACCAGTACCAAGCAGTGGATAGTGATAGTGTGACTAGTT
66 ACATGCCATAAAATAATTCTAAACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTT
18006314 GCTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGATCTATAAAACAAAGAAAACAAAGTAAAT
131 GCTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGATCTATAAAACAAAGAAAACAAAGTAAAT
*
18006378 ATGCCATTTTCGCATGGCTTATATACATTAACCAAAAATATTCTTCCGCCACTAGTCTATTCTAT
1 ATGCCATTTTCGCATGGCTTATATACATTAACCAAAAATATTCTTCCGCCACTAGCCTATTCTAT
18006443 ACATGCCATAAAATAATTCTAAACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTT
66 ACATGCCATAAAATAATTCTAAACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTT
*
18006508 GCTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGATCTATAAAACAGAGAAAACAAAG
131 GCTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGATCTATAAAACAAAGAAAACAAAG
18006567 CAAACGGAGT
Statistics
Matches: 185, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
194 185 1.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (194 bp):
ATGCCATTTTCGCATGGCTTATATACATTAACCAAAAATATTCTTCCGCCACTAGCCTATTCTAT
ACATGCCATAAAATAATTCTAAACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTT
GCTGACGATCCCCGAGCCTGTAGCTTCGCAATGAGATCTATAAAACAAAGAAAACAAAGTAAAT
Found at i:18006838 original size:56 final size:56
Alignment explanation
Indices: 18006752--18006863 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
18006742 GTGAGCTCAA
18006752 GTGACATAGATATATTGTATGATTTCACATAACCACCCACACTGATCCGATATCAC
1 GTGACATAGATATATTGTATGATTTCACATAACCACCCACACTGATCCGATATCAC
* * *
18006808 GTGACATAGATATATTGTATGATTTCACATAACCTCTCACACTGATCCGATGTCAC
1 GTGACATAGATATATTGTATGATTTCACATAACCACCCACACTGATCCGATATCAC
18006864 ATAATCATGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (56 bp):
GTGACATAGATATATTGTATGATTTCACATAACCACCCACACTGATCCGATATCAC
Found at i:18007217 original size:37 final size:37
Alignment explanation
Indices: 18007070--18007219 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
18007060 GCTCAGACGA
* * * * *
18007070 AATCTCCACACGAAGTTATCGGGTCTTACCTGGAAAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
18007107 AATCTCCAGACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
18007144 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
18007181 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
18007218 AA
1 AA
18007220 GAGACCTTTA
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:18007298 original size:37 final size:37
Alignment explanation
Indices: 18007239--18007310 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
18007229 AGCTCAGACG
*
18007239 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
18007276 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
18007311 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:18007525 original size:47 final size:47
Alignment explanation
Indices: 18007473--18007752 Score: 407
Period size: 47 Copynumber: 6.0 Consensus size: 47
18007463 TTTCACACTA
* * * *
18007473 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
18007520 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
18007567 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
18007614 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACGTTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
18007661 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCATATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
18007708 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
18007753 AAAATCCTAA
Statistics
Matches: 207, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 207 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:18008670 original size:25 final size:25
Alignment explanation
Indices: 18008642--18008709 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
18008632 CTCCATAGCA
*
18008642 TGTGAGAGCATACCGATTTATAACT
1 TGTGAGAGCATACCGATTTACAACT
* * *
18008667 TGTGAGAGCATACTGATCTACAGCT
1 TGTGAGAGCATACCGATTTACAACT
* *
18008692 TGAGTGAGCATACCGATT
1 TGTGAGAGCATACCGATT
18008710 CACAGCTCGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
TGTGAGAGCATACCGATTTACAACT
Found at i:18011028 original size:40 final size:40
Alignment explanation
Indices: 18010996--18012107 Score: 2010
Period size: 40 Copynumber: 27.8 Consensus size: 40
18010986 CCAGCATGAT
* * * *
18010996 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
18011036 TACTCTTCAGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTC-GGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
18011076 TGCTCTTCGGAACTTTGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
18011116 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
18011156 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
18011196 TGCTCTTCGGGACTTAGCCTGGATACATCGCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
18011236 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011276 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011316 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011356 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011396 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011436 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011476 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011516 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011556 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011596 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011636 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011676 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011716 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011756 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011796 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011836 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011876 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011916 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
18011956 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18011996 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
18012036 TGCTCTTCAGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
18012076 TGCTCTTCGGGACTTAGTCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
18012108 CTCAATTCTC
Statistics
Matches: 1040, Mismatches: 30, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
39 2 0.00
40 1035 1.00
41 3 0.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:18013391 original size:37 final size:37
Alignment explanation
Indices: 18013333--18013477 Score: 263
Period size: 37 Copynumber: 3.9 Consensus size: 37
18013323 GCTCAGACGG
* * *
18013333 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
18013370 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
18013407 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
18013444 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
18013478 ATATATTTCC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:18013678 original size:48 final size:48
Alignment explanation
Indices: 18013624--18013758 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
18013614 GCACATCGCC
18013624 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* *
18013672 TACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
*
18013720 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
18013759 TGCATGTTCA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
Found at i:18013800 original size:25 final size:24
Alignment explanation
Indices: 18013776--18013851 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
18013766 TCATATTCAC
18013776 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
* ** *
18013800 CATATAT-G-CA-T-GTTCATATTCA
1 CACAT-TGGCCATTCGGCCTTA-TCA
18013822 CCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
18013847 CACAT
1 CACAT
18013852 ATGCATGTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 4 0.11
22 5 0.14
23 7 0.19
24 12 0.32
25 5 0.14
26 4 0.11
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:18013802 original size:47 final size:47
Alignment explanation
Indices: 18013729--18013968 Score: 363
Period size: 47 Copynumber: 5.1 Consensus size: 47
18013719 ATACATATTT
* * * *
18013729 CACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
*
18013776 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* *
18013823 CACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
*
18013870 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* * ** *
18013917 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
18013964 CACAT
1 CACAT
18013969 AAAATCCTAA
Statistics
Matches: 182, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
Found at i:18013895 original size:22 final size:22
Alignment explanation
Indices: 18013868--18013939 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
18013858 GTTCACATTC
18013868 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
18013890 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
18013914 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
18013937 ATC
1 ATC
18013940 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:18015461 original size:85 final size:85
Alignment explanation
Indices: 18015332--18015765 Score: 859
Period size: 85 Copynumber: 5.1 Consensus size: 85
18015322 TATTTTATTG
*
18015332 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
18015397 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
18015417 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
18015482 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
18015502 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
18015567 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
18015587 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
18015652 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
18015672 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
18015737 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
18015757 CCCATGCTC
1 CCCATGCTC
18015766 ATGGCCGGCC
Statistics
Matches: 348, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 348 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:18024291 original size:22 final size:21
Alignment explanation
Indices: 18024265--18024307 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
18024255 GGGTAGAATT
*
18024265 GTAAATTAATAATAAAACTAAA
1 GTAAATTAATAAGAAAA-TAAA
18024287 GTAAATTAATAAGAAAATAAA
1 GTAAATTAATAAGAAAATAAA
18024308 CATTTTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
GTAAATTAATAAGAAAATAAA
Found at i:18025320 original size:20 final size:20
Alignment explanation
Indices: 18025295--18025334 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
18025285 GCTTGTACGG
*
18025295 GTTTGCACTTTGGTGCCTCT
1 GTTTGCACTTCGGTGCCTCT
18025315 GTTTGCACTTCGGTGCCTCT
1 GTTTGCACTTCGGTGCCTCT
18025335 CATCACACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.28, G:0.25, T:0.42
Consensus pattern (20 bp):
GTTTGCACTTCGGTGCCTCT
Found at i:18038146 original size:69 final size:70
Alignment explanation
Indices: 18037957--18038148 Score: 253
Period size: 70 Copynumber: 2.8 Consensus size: 70
18037947 TCATCAAAAA
* * * * *
18037957 CTCAAATGGTTAACGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTTGCAGGTTCAATACCA
1 CTCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTTTCATTCTAAGGCTCGCAAGTTCAATACCA
18038022 CAACC
66 CAACC
* * *
18038027 CTCAAACAGTTAGCAAGAGTTAAAAGCTCCCAACTATT-ATTCTAATGCTCGCAAGTTCAATACC
1 CTCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACT-TTCATTCTAAGGCTCGCAAGTTCAATACC
* *
18038091 GCAGCC
65 ACAACC
* *
18038097 C-CAAATAGTTAGCGATAGTTAAAAGCTCCCAACTTTCATTTTAAGGCTCGCA
1 CTCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTTTCATTCTAAGGCTCGCA
18038149 GGTTTAACAT
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
68 2 0.02
69 43 0.41
70 59 0.56
71 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (70 bp):
CTCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTTTCATTCTAAGGCTCGCAAGTTCAATACCA
CAACC
Found at i:18044784 original size:23 final size:22
Alignment explanation
Indices: 18044749--18044815 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
18044739 AGTATTATTA
* *
18044749 AAAATATATATATTTAAAATTT
1 AAAATAAAAATATTTAAAATTT
*
18044771 AAGAATAAAAATA-TTACAATATT
1 AA-AATAAAAATATTTAAAAT-TT
* * *
18044794 AATATAAAAACATTTAATATTT
1 AAAATAAAAATATTTAAAATTT
18044816 TTTTAACCAC
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
22 18 0.51
23 17 0.49
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (22 bp):
AAAATAAAAATATTTAAAATTT
Found at i:18049329 original size:37 final size:37
Alignment explanation
Indices: 18049279--18049357 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
18049269 TTATTACGAA
* * *
18049279 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
18049316 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
18049353 GTCTT
1 GTCTT
18049358 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:18049651 original size:49 final size:49
Alignment explanation
Indices: 18049476--18049992 Score: 786
Period size: 49 Copynumber: 10.8 Consensus size: 49
18049466 CCCTTCGGGA
* * * * *
18049476 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18049523 CCTGTCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
18049570 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18049617 CTTATCACATGTATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18049666 CTTATCACATGTATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18049715 CTTATCACATGTATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18049764 CTTATCACATGTATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18049813 CTTATCACATGTATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18049862 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18049911 CTTATCACA--TATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
18049958 CTTATCTCA--TATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATGTATATACACT-TTCACATTCATCACAT
18049993 AGAATCCTAA
Statistics
Matches: 448, Mismatches: 18, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
46 2 0.00
47 158 0.35
49 288 0.64
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18050487 original size:53 final size:52
Alignment explanation
Indices: 18050425--18050529 Score: 183
Period size: 53 Copynumber: 2.0 Consensus size: 52
18050415 ACTCTTCACT
*
18050425 ACGAATCAAATTTATCATTTTACAGAATTCAAAATGTGTTGTATTTTATTTCA
1 ACGAATCAAATTTATCATTTTACAGAATTC-AAATGTGTTGTATTTGATTTCA
*
18050478 ACGAATCAAATTTCTCATTTTACAGAATTCAAATGTGTTGTATTTGATTTCA
1 ACGAATCAAATTTATCATTTTACAGAATTCAAATGTGTTGTATTTGATTTCA
18050530 TTTGAAACTA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 21 0.42
53 29 0.58
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.43
Consensus pattern (52 bp):
ACGAATCAAATTTATCATTTTACAGAATTCAAATGTGTTGTATTTGATTTCA
Done.