Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 62 of 126
Found at i:18053079 original size:46 final size:46
Alignment explanation
Indices: 18053012--18053186 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
18053002 TGTAACCCGC
*
18053012 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
18053058 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
18053108 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
18053151 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
18053187 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:18053127 original size:93 final size:93
Alignment explanation
Indices: 18053019--18053190 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
18053009 CGCCCATAAG
* * * * *
18053019 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTTA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
18053084 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
18053112 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
18053177 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
18053191 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:18053206 original size:46 final size:46
Alignment explanation
Indices: 18053061--18053199 Score: 110
Period size: 47 Copynumber: 3.0 Consensus size: 46
18053051 TTCGCATCCA
* *
18053061 TAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
18053109 TCA-CGAACTC-AGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGA-ACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
18053154 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCTCAACCATC
18053200 CTAGTGACAT
Statistics
Matches: 71, Mismatches: 11, Indels: 20
0.70 0.11 0.20
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 26 0.37
47 28 0.39
48 2 0.03
49 4 0.06
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:18054355 original size:102 final size:102
Alignment explanation
Indices: 18054179--18054381 Score: 397
Period size: 102 Copynumber: 2.0 Consensus size: 102
18054169 CAAAAATTCA
*
18054179 TTCCATGTCCTAATTTTGTCCATGAACTTAAAATTGGTCAAATTTCTATTTAAGACCTCCTCATT
1 TTCCATGTCCTAATTTTGTCCATGAACTTAAAATTGGTCAAATTGCTATTTAAGACCTCCTCATT
18054244 AATATTCCAAATCAATTTCATACTAAAAACTTCTAGC
66 AATATTCCAAATCAATTTCATACTAAAAACTTCTAGC
18054281 TTCCATGTCCTAATTTTGTCCATGAACTTAAAATTGGTCAAATTGCTATTTAAGACCTCCTCATT
1 TTCCATGTCCTAATTTTGTCCATGAACTTAAAATTGGTCAAATTGCTATTTAAGACCTCCTCATT
18054346 AATATTCCAAATCAATTTCATACTAAAAACTTCTAG
66 AATATTCCAAATCAATTTCATACTAAAAACTTCTAG
18054382 AATGCAAGTT
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.38
Consensus pattern (102 bp):
TTCCATGTCCTAATTTTGTCCATGAACTTAAAATTGGTCAAATTGCTATTTAAGACCTCCTCATT
AATATTCCAAATCAATTTCATACTAAAAACTTCTAGC
Found at i:18056470 original size:23 final size:23
Alignment explanation
Indices: 18056439--18056482 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
18056429 TGGATGGGCA
18056439 ACACACCCGTGTCCATGGCCCGC
1 ACACACCCGTGTCCATGGCCCGC
* *
18056462 ACACGCCCGTTTCCATGGCCC
1 ACACACCCGTGTCCATGGCCC
18056483 ATGTCCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.48, G:0.20, T:0.16
Consensus pattern (23 bp):
ACACACCCGTGTCCATGGCCCGC
Found at i:18061736 original size:19 final size:19
Alignment explanation
Indices: 18061712--18061762 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
18061702 TGGACACAGG
18061712 GACACGCCCGTGTGCCCTC
1 GACACGCCCGTGTGCCCTC
18061731 GACACGCCCGTGTGCCCTC
1 GACACGCCCGTGTGCCCTC
18061750 GACACGCCCGTGT
1 GACACGCCCGTGT
18061763 CCTCAGGCCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.12, C:0.45, G:0.27, T:0.16
Consensus pattern (19 bp):
GACACGCCCGTGTGCCCTC
Found at i:18063644 original size:50 final size:48
Alignment explanation
Indices: 18063529--18063842 Score: 172
Period size: 50 Copynumber: 6.6 Consensus size: 48
18063519 GGTAAGGTGC
* *
18063529 CGATGCCATGTCCCGGACATGGTCTTACACTGGCTCACACATCAAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGT
* * * *
18063577 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCGTATATCGAGGAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCAC--ACATCAAAG-T
*
18063628 -GATGCCATGTCCCAGACATGGTCTTACACT-AGCT--CTCATC----T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCACACATCAAAGT
* * * * ** ** *
18063669 -GATGCCATTTCCTAGCCATGGTTTTACACT-AGCTCTTATCTATCAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCACA-C-ATCAAAGT
* * * * * * *
18063718 CAATTCCATGTCCCAGCCATGGTCTTACACT-A-ACACATAT-TAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGT
* * * * *
18063763 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCACACA--TCAAAGT
*
18063813 CGATGCCATGTCCCAAACA-GGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
18063843 AGGTCTCATA
Statistics
Matches: 213, Mismatches: 35, Indels: 35
0.75 0.12 0.12
Matches are distributed among these distances:
41 31 0.15
44 1 0.00
45 34 0.16
46 5 0.02
47 5 0.02
48 38 0.18
49 13 0.06
50 85 0.40
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGT
Found at i:18063689 original size:41 final size:41
Alignment explanation
Indices: 18063627--18063802 Score: 138
Period size: 45 Copynumber: 4.0 Consensus size: 41
18063617 ATATCGAGGA
18063627 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
* * * *
18063668 TGATGCCATTTCCTAGCCATGGTTTTACACTAGCTCTTATCTATC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTC---TC-ATC
* * * *
18063713 AGTGCCAATTCCATGTCCCAGCCATGGTCTTACACTAACACAT-ATTAAGC
1 --TG---ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCA-T---C
*
18063763 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
18063803 ATCTCGAGGC
Statistics
Matches: 106, Mismatches: 15, Indels: 25
0.73 0.10 0.17
Matches are distributed among these distances:
41 32 0.30
44 4 0.04
45 34 0.32
46 1 0.01
47 3 0.03
48 3 0.03
50 29 0.27
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (41 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
Found at i:18085190 original size:29 final size:29
Alignment explanation
Indices: 18085148--18085205 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
18085138 CTTGGTGGAA
*
18085148 CATAGTTGGATCTCTTAGGTTTGATTGCT
1 CATAGTTGCATCTCTTAGGTTTGATTGCT
18085177 CATAGTTGCATCTCTTAGGTTTGATTGCT
1 CATAGTTGCATCTCTTAGGTTTGATTGCT
18085206 TATTAATCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.45
Consensus pattern (29 bp):
CATAGTTGCATCTCTTAGGTTTGATTGCT
Found at i:18088562 original size:38 final size:38
Alignment explanation
Indices: 18088506--18088580 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
18088496 GATGTGTATT
* * *
18088506 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
18088544 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
18088581 TCGGACCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:18100238 original size:40 final size:40
Alignment explanation
Indices: 18100194--18100457 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
18100184 GCTCCTCGTT
* *
18100194 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
18100234 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
18100274 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
18100314 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
18100354 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
18100393 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
18100434 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18100458 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:18102166 original size:43 final size:43
Alignment explanation
Indices: 18102059--18102169 Score: 177
Period size: 43 Copynumber: 2.6 Consensus size: 43
18102049 GGCTGTCACA
* *
18102059 TGCCTAGTAGGCTTAGTGCCGATGATGTGTATTCGGGCCTTCG
1 TGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCG
*
18102102 TGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCG
1 TGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCG
* *
18102145 TGCCTAGCAGGCGTAATGCCGGTGA
1 TGCCTAGCAGGCTTAGTGCCGGTGA
18102170 AATGATATGT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (43 bp):
TGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCG
Found at i:18121164 original size:49 final size:47
Alignment explanation
Indices: 18121049--18121169 Score: 131
Period size: 49 Copynumber: 2.5 Consensus size: 47
18121039 TGCCGATGCC
* *
18121049 ATGTTCCAGATATGGTCTTACACTGACTCATCCATTAAGTCAATGCCA
1 ATGTCCCAGATATGGTCTTACACTGACTCATCCATCAAGTCAA-GCCA
* * *
18121097 A-GTCCCAGACATGGTCTTACACTGACT-ATCGAGATCGAGATCAA-CACA
1 ATGTCCCAGATATGGTCTTACACTGACTCATC--CATCAAG-TCAAGC-CA
18121145 ATGTCCCAGATATGGTCTTACACTG
1 ATGTCCCAGATATGGTCTTACACTG
18121170 GATTTCATCT
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
46 3 0.05
47 25 0.40
48 8 0.13
49 26 0.42
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (47 bp):
ATGTCCCAGATATGGTCTTACACTGACTCATCCATCAAGTCAAGCCA
Found at i:18127508 original size:40 final size:39
Alignment explanation
Indices: 18127477--18127686 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
18127467 GGACTAAGAT
* *
18127477 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
18127517 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
18127557 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
18127597 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
18127637 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
18127676 CCGAAGGCATT
1 CCGAAGGCATT
18127687 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:18127640 original size:120 final size:120
Alignment explanation
Indices: 18127424--18127686 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
18127414 TTGAATGCTG
* *
18127424 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
18127488 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
18127544 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
18127607 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
18127663 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
18127687 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:18127706 original size:79 final size:80
Alignment explanation
Indices: 18127477--18127721 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
18127467 GGACTAAGAT
* * * * * * * ** *
18127477 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
18127540 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
18127557 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
18127622 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
18127637 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
18127701 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
18127715 CCGAAGG
1 CCGAAGG
18127722 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:18135458 original size:40 final size:39
Alignment explanation
Indices: 18135427--18135636 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
18135417 GGACTAAGAT
* *
18135427 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
18135467 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
18135507 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
18135547 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
18135587 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
18135626 CCGAAGGCATT
1 CCGAAGGCATT
18135637 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:18135590 original size:120 final size:120
Alignment explanation
Indices: 18135374--18135636 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
18135364 TTGAATGCTG
* *
18135374 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
18135438 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
18135494 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
18135557 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
18135613 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
18135637 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:18135656 original size:79 final size:80
Alignment explanation
Indices: 18135427--18135671 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
18135417 GGACTAAGAT
* * * * * * * ** *
18135427 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
18135490 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
18135507 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
18135572 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
18135587 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
18135651 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
18135665 CCGAAGG
1 CCGAAGG
18135672 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:18137688 original size:17 final size:17
Alignment explanation
Indices: 18137647--18137688 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
18137637 TTTGAGTCCA
18137647 TTTATTTTCACTTTGTT
1 TTTATTTTCACTTTGTT
**
18137664 TTGCTTTTC-CTTTTGTT
1 TTTATTTTCAC-TTTGTT
18137681 TTTATTTT
1 TTTATTTT
18137689 AAAAGTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.74
Consensus pattern (17 bp):
TTTATTTTCACTTTGTT
Found at i:18139754 original size:60 final size:60
Alignment explanation
Indices: 18139625--18139744 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
18139615 GGTTTCTTTT
18139625 GATATGATATGATCAATGAATGATGTGTAAATACTTGCTAGTGATTAGCTAATAGAGTGG
1 GATATGATATGATCAATGAATGATGTGTAAATACTTGCTAGTGATTAGCTAATAGAGTGG
*
18139685 GATATGATATGATCAATGAATGATGTGTAAATACTTTCTAGTGATTAGCTAATAGAGTGG
1 GATATGATATGATCAATGAATGATGTGTAAATACTTGCTAGTGATTAGCTAATAGAGTGG
18139745 CTGATGATAT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.34
Consensus pattern (60 bp):
GATATGATATGATCAATGAATGATGTGTAAATACTTGCTAGTGATTAGCTAATAGAGTGG
Found at i:18158436 original size:11 final size:11
Alignment explanation
Indices: 18158420--18158448 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
18158410 TATAAAATTT
18158420 TTCTATTAAAA
1 TTCTATTAAAA
18158431 TTCTATTAAAA
1 TTCTATTAAAA
18158442 TTC-ATTA
1 TTCTATTA
18158449 TCAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:18162642 original size:18 final size:19
Alignment explanation
Indices: 18162619--18162660 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
18162609 GAGAAGAAGA
18162619 GGGAA-TTTGGGAGTGAGC
1 GGGAATTTTGGGAGTGAGC
18162637 GGGAATTTTTTGGGAGTGAGC
1 GGGAA--TTTTGGGAGTGAGC
18162658 GGG
1 GGG
18162661 TAAGCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
21 16 0.76
ACGTcount: A:0.19, C:0.05, G:0.50, T:0.26
Consensus pattern (19 bp):
GGGAATTTTGGGAGTGAGC
Found at i:18162962 original size:7 final size:7
Alignment explanation
Indices: 18162952--18162998 Score: 85
Period size: 7 Copynumber: 6.6 Consensus size: 7
18162942 TTTTTTTATT
18162952 TTTTAAA
1 TTTTAAA
18162959 TTTTAAA
1 TTTTAAA
18162966 TTTTAAA
1 TTTTAAA
18162973 TTTTAAA
1 TTTTAAA
18162980 TTTTAAA
1 TTTTAAA
18162987 TTTTAAAA
1 TTTT-AAA
18162995 TTTT
1 TTTT
18162999 TTTGAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
7 32 0.82
8 7 0.18
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTTTAAA
Found at i:18163018 original size:9 final size:8
Alignment explanation
Indices: 18162951--18163025 Score: 68
Period size: 7 Copynumber: 9.2 Consensus size: 8
18162941 GTTTTTTTAT
18162951 TTTTTAAA
1 TTTTTAAA
18162959 -TTTTAAA
1 TTTTTAAA
18162966 -TTTTAAA
1 TTTTTAAA
18162973 -TTTTAAA
1 TTTTTAAA
18162980 -TTTTAAA
1 TTTTTAAA
*
18162987 TTTTAAAA
1 TTTTTAAA
18162995 TTTTTTTGAAGA
1 --TTTTT-AA-A
18163007 TTTTTATAA
1 TTTTTA-AA
18163016 TTTTTAAA
1 TTTTTAAA
18163024 TT
1 TT
18163026 ATCGTATAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
7 28 0.47
8 10 0.17
9 8 0.14
10 10 0.17
11 2 0.03
12 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (8 bp):
TTTTTAAA
Found at i:18163837 original size:18 final size:16
Alignment explanation
Indices: 18163814--18163855 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
18163804 TTTCTCTTAA
18163814 ATAATTTAAACTATATT
1 ATAATTTAAA-TATATT
*
18163831 CATAATTTTAATATATT
1 -ATAATTTAAATATATT
18163848 A-AATTTAA
1 ATAATTTAA
18163856 TATTATCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 1 0.05
17 6 0.27
18 9 0.41
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTTAAATATATT
Found at i:18163935 original size:14 final size:14
Alignment explanation
Indices: 18163918--18163979 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 14
18163908 ACTAATTAAT
18163918 CTAAACCCTAACCC
1 CTAAACCCTAACCC
* *
18163932 CTAACCCCTAACCT
1 CTAAACCCTAACCC
*
18163946 CTAAACCCTAAGCC
1 CTAAACCCTAACCC
* * * *
18163960 ATAAAACATAAACC
1 CTAAACCCTAACCC
18163974 CTAAAC
1 CTAAAC
18163980 TTCTACCCCT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (14 bp):
CTAAACCCTAACCC
Found at i:18163978 original size:7 final size:7
Alignment explanation
Indices: 18163918--18163979 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
18163908 ACTAATTAAT
18163918 CTAAACC
1 CTAAACC
*
18163925 CTAACCC
1 CTAAACC
*
18163932 CTAACCC
1 CTAAACC
18163939 CT-AACC
1 CTAAACC
18163945 TCTAAACC
1 -CTAAACC
*
18163953 CTAAGCC
1 CTAAACC
* *
18163960 ATAAAAC
1 CTAAACC
*
18163967 ATAAACC
1 CTAAACC
18163974 CTAAAC
1 CTAAAC
18163980 TTCTACCCCT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
6 3 0.07
7 38 0.84
8 4 0.09
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:18164087 original size:14 final size:14
Alignment explanation
Indices: 18164065--18164132 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 14
18164055 TTAAATCATG
18164065 ACCATTAAACCTTAA
1 ACCA-TAAACCTTAA
*
18164080 ACCATAAAACCCTAA
1 ACCAT-AAACCTTAA
*
18164095 ACCATAGACCTTAA
1 ACCATAAACCTTAA
* * **
18164109 TCCTTAAATATTAA
1 ACCATAAACCTTAA
*
18164123 ACCCTAAACC
1 ACCATAAACC
18164133 CAAAAATAAA
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
14 23 0.57
15 17 0.43
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (14 bp):
ACCATAAACCTTAA
Found at i:18164089 original size:15 final size:15
Alignment explanation
Indices: 18164065--18164100 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
18164055 TTAAATCATG
* *
18164065 ACCATTAAACCTTAA
1 ACCATAAAACCCTAA
18164080 ACCATAAAACCCTAA
1 ACCATAAAACCCTAA
18164095 ACCATA
1 ACCATA
18164101 GACCTTAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (15 bp):
ACCATAAAACCCTAA
Found at i:18164289 original size:48 final size:47
Alignment explanation
Indices: 18164248--18164361 Score: 155
Period size: 48 Copynumber: 2.4 Consensus size: 47
18164238 TTTTTAGGGT
18164248 TTAGGGTTTTAGAGGTTATAGATTAGTGTTTAGTG-TTTTTTTAGGGT
1 TTAGGGTTTTAGAGGTTATAGATTAGTGTTTA-TGATTTTTTTAGGGT
18164295 TTAGGGGTTTTA-AGGGTTATAGATTAGTGTTTATGAATTTTTTT-GGGT
1 TTA-GGGTTTTAGA-GGTTATAGATTAGTGTTTATG-ATTTTTTTAGGGT
*
18164343 TTA-GGTTTTAGGGGTTATA
1 TTAGGGTTTTAGAGGTTATA
18164362 TGACTTTTTG
Statistics
Matches: 61, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
46 14 0.23
47 6 0.10
48 34 0.56
49 7 0.11
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (47 bp):
TTAGGGTTTTAGAGGTTATAGATTAGTGTTTATGATTTTTTTAGGGT
Found at i:18164417 original size:42 final size:41
Alignment explanation
Indices: 18164366--18164534 Score: 223
Period size: 41 Copynumber: 4.1 Consensus size: 41
18164356 GTTATATGAC
*
18164366 TTTTT-GCAGCGTTTTGAGAAAAAACGCCGCTATTGCTCTAT
1 TTTTTAGCAGCG-TTTGACAAAAAACGCCGCTATTGCTCTAT
*
18164407 TTTTTAGCAGCGTTTGACCAAAAACGCCGCTATTGCTCTAT
1 TTTTTAGCAGCGTTTGACAAAAAACGCCGCTATTGCTCTAT
* * * *
18164448 TTTTTAGCTGCGTCTGACCAAAAACGCCGCTATTGCTCTGT
1 TTTTTAGCAGCGTTTGACAAAAAACGCCGCTATTGCTCTAT
* * * *
18164489 TTTTTAGCTGCGTTTTACCAGAAAACGCTGCTATTGCTCTAT
1 TTTTTAGCAGCGTTTGA-CAAAAAACGCCGCTATTGCTCTAT
18164531 TTTT
1 TTTT
18164535 AGGGACGTTT
Statistics
Matches: 115, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
41 85 0.74
42 30 0.26
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (41 bp):
TTTTTAGCAGCGTTTGACAAAAAACGCCGCTATTGCTCTAT
Found at i:18164536 original size:41 final size:41
Alignment explanation
Indices: 18164385--18164534 Score: 246
Period size: 41 Copynumber: 3.6 Consensus size: 41
18164375 CGTTTTGAGA
*
18164385 AAAAACGCCGCTATTGCTCTATTTTTTAGCAGCGTTTGACC
1 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
*
18164426 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTCTGACC
1 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
* *
18164467 AAAAACGCCGCTATTGCTCTGTTTTTTAGCTGCGTTTTACC
1 AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
*
18164508 AGAAAACGCTGCTATTGCTCTATTTTT
1 A-AAAACGCCGCTATTGCTCTATTTTT
18164535 AGGGACGTTT
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 78 0.77
42 23 0.23
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (41 bp):
AAAAACGCCGCTATTGCTCTATTTTTTAGCTGCGTTTGACC
Found at i:18164946 original size:19 final size:20
Alignment explanation
Indices: 18164919--18164963 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
18164909 ATAAAGTACA
* *
18164919 TTCTCTATTGC-TTCTTATT
1 TTCTTTATTGCTTTCATATT
18164938 TTCTTTATTGCTTTCATATT
1 TTCTTTATTGCTTTCATATT
18164958 TTCTTT
1 TTCTTT
18164964 GTTCTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.67
Consensus pattern (20 bp):
TTCTTTATTGCTTTCATATT
Found at i:18167848 original size:28 final size:28
Alignment explanation
Indices: 18167824--18167908 Score: 125
Period size: 28 Copynumber: 3.0 Consensus size: 28
18167814 CTTATATATG
18167824 TGCAAAAATACAAACTTTGTAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
* * *
18167852 TTCAAAAATATAAACTTTGAAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
**
18167880 TGCAAAAATACAAAAGTTGTAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
18167908 T
1 T
18167909 TAAATTCATT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.29
Consensus pattern (28 bp):
TGCAAAAATACAAACTTTGTAATATAAA
Found at i:18170358 original size:48 final size:48
Alignment explanation
Indices: 18170229--18170360 Score: 142
Period size: 48 Copynumber: 2.8 Consensus size: 48
18170219 CATGATTAAT
*
18170229 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAC
1 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
* * * * * *
18170277 GAGATCACGTGTAAGACCATAT-TCGAGATATGGC-TTCGGCATTGTTAA
1 GAGATCTCGTGTAAGACCATGTCT-GGGACATGGCATT-GGCATCGATAA
* * *
18170325 GTGATTTCGTATAAGACCATGTCTGGGACATGGCAT
1 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCAT
18170361 CGAAATAAGG
Statistics
Matches: 66, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
47 3 0.05
48 61 0.92
49 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
Found at i:18170406 original size:90 final size:90
Alignment explanation
Indices: 18170288--18170453 Score: 217
Period size: 90 Copynumber: 1.8 Consensus size: 90
18170278 AGATCACGTG
* * * * * * *
18170288 TAAGACCATATTCGAGATATGGCTTCGGCATTG-TTAAGTGATTTCGTATAAGACCATGTCTGGG
1 TAAGACCATATTCGAGACATGGCGTCGGCACTGATT-AGAGACTTCGTATAAGACCATATCTAGG
18170352 ACATGGCATCGAAATAAGGTGCCGTA
65 ACATGGCATCGAAATAAGGTGCCGTA
* * *
18170378 TAAGACCATGTTTGAGACATGGCGTCGGCACTGATTCGAGACTTCGTATAAGACCATATCTAGGA
1 TAAGACCATATTCGAGACATGGCGTCGGCACTGATTAGAGACTTCGTATAAGACCATATCTAGGA
*
18170443 TATGGCATCGA
66 CATGGCATCGA
18170454 TGTGTGGTCC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 62 0.97
91 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (90 bp):
TAAGACCATATTCGAGACATGGCGTCGGCACTGATTAGAGACTTCGTATAAGACCATATCTAGGA
CATGGCATCGAAATAAGGTGCCGTA
Found at i:18170472 original size:90 final size:90
Alignment explanation
Indices: 18170286--18170477 Score: 206
Period size: 90 Copynumber: 2.1 Consensus size: 90
18170276 CGAGATCACG
* * * * * * * *
18170286 TGTAAGACCATATTCGAGATATGGCTTCGGCATTGTTAAGTGATTTCGTATAAGACCATGTCTGG
1 TGTAAGACCATGTTCGAGACATGGCGTCGGCACTGTTAAGAGACTTCGTATAAGACCATATCTAG
* *
18170351 GACATGGCATCGAAATAAGGTGCCG
66 GACATGGCATCGAAATAAGGTCCCA
* * *
18170376 TATAAGACCATGTTTGAGACATGGCGTCGGCACTGATT-CGAGACTTCGTATAAGACCATATCTA
1 TGTAAGACCATGTTCGAGACATGGCGTCGGCACTG-TTAAGAGACTTCGTATAAGACCATATCTA
* ** **
18170440 GGATATGGCATCGATGTGTGGTCCCA
65 GGACATGGCATCGAAATAAGGTCCCA
18170466 TGTAAGACCATG
1 TGTAAGACCATG
18170478 CCTAGGACAT
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
90 80 0.98
91 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (90 bp):
TGTAAGACCATGTTCGAGACATGGCGTCGGCACTGTTAAGAGACTTCGTATAAGACCATATCTAG
GACATGGCATCGAAATAAGGTCCCA
Found at i:18170879 original size:44 final size:44
Alignment explanation
Indices: 18170816--18170903 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
18170806 TTTATTAGTT
*
18170816 ACATACAACTTACTAAGCTTTATGCTTACCCCCTCTCTCTTTCC
1 ACATACAACTTACTAAGCTTTATGCTTACCCCCTCTCGCTTTCC
18170860 ACATACAACTTACTAAGCTTTATGCTTACCCCCTCTCGCTTTCC
1 ACATACAACTTACTAAGCTTTATGCTTACCCCCTCTCGCTTTCC
18170904 CTTTTTCTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.23, C:0.36, G:0.06, T:0.35
Consensus pattern (44 bp):
ACATACAACTTACTAAGCTTTATGCTTACCCCCTCTCGCTTTCC
Found at i:18183996 original size:42 final size:42
Alignment explanation
Indices: 18183885--18184046 Score: 216
Period size: 42 Copynumber: 3.8 Consensus size: 42
18183875 TACCGTACCA
* * * **
18183885 ATGCCATATCCCAGACATGGTCTTACATGTACTCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
18183927 ATGCCAATAGCCCAGCTATGGTCTTACATGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
18183970 ATGCCATATCCCAGGTATGGTCTTACATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
18184012 ATGCCATATCCCAGATATGGTCTTATATGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCT
18184047 TAGTAACCCT
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 71 0.67
43 35 0.33
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:18189696 original size:29 final size:30
Alignment explanation
Indices: 18189625--18189698 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
18189615 GTCATGAGAT
* *
18189625 TGGCACTAAGTGTACGGGTTTAAATTGTACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTACA
18189656 --GCACTAAGTGTGCGAGTTTAAA-GTACA
1 TGGCACTAAGTGTGCGAGTTTAAATGTACA
18189683 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
18189699 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:18189921 original size:174 final size:174
Alignment explanation
Indices: 18189656--18190157 Score: 941
Period size: 174 Copynumber: 2.9 Consensus size: 174
18189646 AAATTGTACA
18189656 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
*
18189721 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTACGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
*
18189786 TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
18189830 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
18189895 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
18189960 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
18190004 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
* * *
18190069 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
18190134 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
18190158 ACCTTGAGTT
Statistics
Matches: 321, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 321 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:18193588 original size:12 final size:12
Alignment explanation
Indices: 18193571--18193598 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
18193561 ATCCAAAGCT
18193571 AGAGCACCGGCC
1 AGAGCACCGGCC
18193583 AGAGCACCGGCC
1 AGAGCACCGGCC
18193595 AGAG
1 AGAG
18193599 GTTACACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.36, G:0.36, T:0.00
Consensus pattern (12 bp):
AGAGCACCGGCC
Found at i:18201904 original size:40 final size:40
Alignment explanation
Indices: 18201859--18202730 Score: 360
Period size: 40 Copynumber: 21.8 Consensus size: 40
18201849 ATAACCACAA
* *
18201859 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
18201899 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * *
18201939 GCACAAATGCCTTCGGGTCTTAGCCTGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18201979 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202019 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202059 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202099 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202139 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202179 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202219 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202259 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202299 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202339 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202379 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202419 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202459 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202499 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202539 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202579 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202619 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
18202659 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
18202699 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
18202731 CATTCAAATG
Statistics
Matches: 820, Mismatches: 11, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
39 1 0.00
40 815 0.99
41 4 0.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:18201943 original size:80 final size:80
Alignment explanation
Indices: 18201903--18202729 Score: 1584
Period size: 80 Copynumber: 10.3 Consensus size: 80
18201893 CAACTCGCAC
* * * * * *
18201903 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCTGG
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGG
18201967 ATAAAATCACTAGCAT
65 ATAAAATCACTAGCAT
18201983 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202048 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202063 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202128 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202143 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202208 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202223 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202288 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202303 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202368 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202383 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202448 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202463 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202528 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202543 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202608 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202623 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202688 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
18202703 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
18202730 TCATTCAAAT
Statistics
Matches: 740, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
80 736 0.99
81 4 0.01
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
TAAAATCACTAGCAT
Found at i:18202067 original size:120 final size:120
Alignment explanation
Indices: 18201903--18202729 Score: 1584
Period size: 120 Copynumber: 6.9 Consensus size: 120
18201893 CAACTCGCAC
* * * * * *
18201903 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCTGG
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGG
18201967 ATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
65 ATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
18202023 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202088 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
18202143 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202208 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
18202263 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202328 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
18202383 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202448 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
18202503 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202568 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
18202623 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
18202688 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
18202730 TCATTCAAAT
Statistics
Matches: 700, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
120 696 0.99
121 4 0.01
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (120 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGA
TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:18223902 original size:13 final size:13
Alignment explanation
Indices: 18223884--18223908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18223874 TCGAGCACAC
18223884 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
18223897 GCCCGTGTCCCT
1 GCCCGTGTCCCT
18223909 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:18228329 original size:26 final size:26
Alignment explanation
Indices: 18228300--18228351 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18228290 CACAGAGGAA
18228300 GAGCAAGAAGACGATACTTCA-ACCAC
1 GAGCAAGAAGACGATAC-TCACACCAC
*
18228326 GAGCAAGAGGACGATACTCACACCAC
1 GAGCAAGAAGACGATACTCACACCAC
18228352 AACCGAGGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.40, C:0.29, G:0.21, T:0.10
Consensus pattern (26 bp):
GAGCAAGAAGACGATACTCACACCAC
Found at i:18234719 original size:13 final size:13
Alignment explanation
Indices: 18234701--18234726 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18234691 ATATTATAAT
18234701 TATTTTATGTTAA
1 TATTTTATGTTAA
18234714 TATTTTATGTTAA
1 TATTTTATGTTAA
18234727 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:18236135 original size:40 final size:39
Alignment explanation
Indices: 18236075--18236182 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 39
18236065 CGGATGATAA
*
18236075 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATAT
*
18236115 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTC-CGAAGGCATTTGTGCTAGTGACTATAT
18236155 CCGGGCTAAGTCCCGAAGGCATTTGTGC
1 CCGGGCTAAGT-CCGAAGGCATTTGTGC
18236183 GAGTTGTTAT
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
39 2 0.03
40 61 0.95
41 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:18236194 original size:40 final size:40
Alignment explanation
Indices: 18236087--18236212 Score: 175
Period size: 40 Copynumber: 3.2 Consensus size: 40
18236077 GGACTAAGAT
18236087 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTG-CTATATCCGGGCTAAGTC
* *
18236127 TCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
* * * *
18236167 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GACTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
18236206 CCGAAGG
1 CCGAAGG
18236213 TACTTGGGTT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 14 0.18
40 62 0.81
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
Found at i:18243920 original size:33 final size:33
Alignment explanation
Indices: 18243878--18243946 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
18243868 AATGAAATGA
18243878 GATAAAAGATTATATCGTAATAAGCTCATCTAT
1 GATAAAAGATTATATCGTAATAAGCTCATCTAT
*
18243911 GATAAAAGATTATATCGTAATGAGCTCATCTAT
1 GATAAAAGATTATATCGTAATAAGCTCATCTAT
18243944 GAT
1 GAT
18243947 TGATTTATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (33 bp):
GATAAAAGATTATATCGTAATAAGCTCATCTAT
Found at i:18244374 original size:21 final size:21
Alignment explanation
Indices: 18244345--18244388 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
18244335 TTGTGAAAAT
18244345 GTTACTATGATGATGACATA-GC
1 GTTACTATGAT-ATG-CATATGC
18244367 GTTA-TATGATATGCATATGC
1 GTTACTATGATATGCATATGC
18244387 GT
1 GT
18244389 ATGAGAGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.19
20 7 0.33
21 6 0.29
22 4 0.19
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (21 bp):
GTTACTATGATATGCATATGC
Found at i:18245942 original size:50 final size:48
Alignment explanation
Indices: 18245838--18246061 Score: 212
Period size: 47 Copynumber: 4.7 Consensus size: 48
18245828 TTATTTGTGT
* *
18245838 GCTAGTGTAAGA-CATGTCTGGGATAT-GCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
* *
18245884 GCTAGTGTAAGACCATGTCTTGGACATGGCATC-GGCACGAATATGCAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-AATATG--AGA
* * * * *
18245934 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATAT-GAGA
*
18245983 G-TCAGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAAT-AT-GA-GA
* *
18246030 GCCAGTGTAAGACCATGGCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
18246062 GGGCATTCTA
Statistics
Matches: 148, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 16 0.11
47 46 0.31
48 11 0.07
49 33 0.22
50 38 0.26
51 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGA
Found at i:18246003 original size:49 final size:47
Alignment explanation
Indices: 18245882--18246061 Score: 182
Period size: 50 Copynumber: 3.7 Consensus size: 47
18245872 CACATTATGA
* * ** * * *
18245882 GAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGCACGAATATGCAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCG-AT-CG-AT
*
18245932 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAA-CTCGA--TCGAT
* * * *
18245982 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATCGAT
*
18246028 GAGCCAGTGTAAGACCATGGCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
18246062 GGGCATTCTA
Statistics
Matches: 113, Mismatches: 13, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
46 4 0.04
47 31 0.27
48 4 0.04
49 33 0.29
50 36 0.32
51 4 0.04
52 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATCGAT
Found at i:18250983 original size:30 final size:30
Alignment explanation
Indices: 18250925--18250983 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
18250915 TTTACAAGCC
* * *
18250925 TAGGGGTCAAAGTGTAAATAAGTGAAAGTT
1 TAGGGGTCAAAATGCAAATAAGTAAAAGTT
**
18250955 TAGGGGTCAAAATGCAAATTTGTAAAAGT
1 TAGGGGTCAAAATGCAAATAAGTAAAAGT
18250984 ATGATTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGTCAAAATGCAAATAAGTAAAAGTT
Found at i:18256309 original size:25 final size:25
Alignment explanation
Indices: 18256255--18256309 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
18256245 CAATAATACA
* * *
18256255 AATTCTTTGCCACTTATTCTTTGAG
1 AATTGTTTCCCACTTAATCTTTGAG
18256280 AATTGTTTCCCACTTAATCTTTGAG
1 AATTGTTTCCCACTTAATCTTTGAG
18256305 AATTG
1 AATTG
18256310 CCACAACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (25 bp):
AATTGTTTCCCACTTAATCTTTGAG
Found at i:18256327 original size:17 final size:17
Alignment explanation
Indices: 18256305--18256338 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18256295 AATCTTTGAG
18256305 AATTGCCACAACATTTT
1 AATTGCCACAACATTTT
**
18256322 AATTGCCTTAACATTTT
1 AATTGCCACAACATTTT
18256339 TCATTCATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (17 bp):
AATTGCCACAACATTTT
Found at i:18258622 original size:24 final size:24
Alignment explanation
Indices: 18258589--18258637 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
18258579 AGTCTGTCAA
**
18258589 ATAGGATTTAGGAGTTGATAAGGG
1 ATAGGATTTAGGAGCAGATAAGGG
*
18258613 ATAGGTTTTAGGAGCAGATAAGGG
1 ATAGGATTTAGGAGCAGATAAGGG
18258637 A
1 A
18258638 GGAAATCTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.02, G:0.37, T:0.27
Consensus pattern (24 bp):
ATAGGATTTAGGAGCAGATAAGGG
Found at i:18260121 original size:27 final size:26
Alignment explanation
Indices: 18260056--18260167 Score: 91
Period size: 27 Copynumber: 4.2 Consensus size: 26
18260046 AGGAAGCGTC
* * *
18260056 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCAC-ATTATCTGTT
*
18260083 CCGAGTG-CTCTGCCACATATATCTGTT
1 CTG-GTGACTCTGCCACAT-TATCTGTT
** *
18260110 CTGGTGGTTCTGCCATGATTATCTGTAT
1 CTGGTGACTCTGCCA-CATTATCTGT-T
* *
18260138 CTGGTGACTCTGTCACATTATCTCTT
1 CTGGTGACTCTGCCACATTATCTGTT
18260164 CTGG
1 CTGG
18260168 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
26 10 0.14
27 41 0.59
28 18 0.26
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGTT
Found at i:18262521 original size:28 final size:28
Alignment explanation
Indices: 18262463--18262693 Score: 204
Period size: 28 Copynumber: 8.3 Consensus size: 28
18262453 AGGCCATTAC
* * *
18262463 AAAGCCTTTGTTGCAAACCTCT---ATG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
* *
18262488 AAAGCCTTTATGGCGAACCTCTGAGAGG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
* * * *
18262516 AAAGCCTTTATGGAGAACCTTTGAAAAG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
* *
18262544 AAAGCCTTTATGTCGAACCTCTGAAAGG
1 AAAGCCTTTGTGGCGAACCTCTGAAAGG
* *
18262572 AAAGCCTTTGTGGCAAACCTCCGTAAAGG
1 AAAGCCTTTGTGGCGAACCTCTG-AAAGG
* * * *
18262601 AAAGCTTTTGCGGCAAACCTCTACAAAGG
1 AAAGCCTTTGTGGCGAACCTCT-GAAAGG
*
18262630 AAAGCCTTTGTGGCGAACCTTTGTAAA-G
1 AAAGCCTTTGTGGCGAACCTCTG-AAAGG
*
18262658 AAAGCCTTTGTGAC-AACCTCTGATAAAGG
1 AAAGCCTTTGTGGCGAACCTCTG--AAAGG
18262687 AAA-CCTT
1 AAAGCCTT
18262694 GTGAGAATCT
Statistics
Matches: 171, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
25 19 0.11
27 7 0.04
28 91 0.53
29 54 0.32
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (28 bp):
AAAGCCTTTGTGGCGAACCTCTGAAAGG
Found at i:18264306 original size:45 final size:46
Alignment explanation
Indices: 18264254--18264340 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 46
18264244 TTTTTTTGAG
* *
18264254 AAAACCACATTCATTTCTAAATG-ATTCCATTTCTCCATTTCGAAA
1 AAAACCACAATCATTTCTAAATGTATTCCATTTATCCATTTCGAAA
* * *
18264299 AAAACCACAATCATTTCTGAATGTATTCTATTTATCTATTTC
1 AAAACCACAATCATTTCTAAATGTATTCCATTTATCCATTTC
18264341 TATTTATTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 21 0.58
46 15 0.42
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (46 bp):
AAAACCACAATCATTTCTAAATGTATTCCATTTATCCATTTCGAAA
Found at i:18269428 original size:29 final size:28
Alignment explanation
Indices: 18269339--18269430 Score: 78
Period size: 29 Copynumber: 3.1 Consensus size: 28
18269329 ACTATGTGCC
* *
18269339 AGTGATTACAGTTATCATGTACTTTGTACT
1 AGTG-TTACAATTATCAAGTAC-TTGTACT
* *
18269369 GGTGTTACAATTATCAAGCACTT-TACGCT
1 AGTGTTACAATTATCAAGTACTTGTA--CT
* *
18269398 AGTGTTATATTTATCAAGTACTATGTACT
1 AGTGTTACAATTATCAAGTACT-TGTACT
18269427 AGTG
1 AGTG
18269431 GTGGGTACCA
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
27 2 0.04
28 2 0.04
29 40 0.80
30 4 0.08
31 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.40
Consensus pattern (28 bp):
AGTGTTACAATTATCAAGTACTTGTACT
Found at i:18278234 original size:40 final size:40
Alignment explanation
Indices: 18278174--18278357 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
18278164 TATTCGAATG
*
18278174 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
18278214 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
18278254 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
18278294 ATATCCGGGCCAAG-TCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCC-GAAGGCATTTATGCTAGTGACT
*
18278334 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
18278358 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 114 0.93
41 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:18278316 original size:80 final size:80
Alignment explanation
Indices: 18278174--18278357 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
18278164 TATTCGAATG
* * * *
18278174 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACCAAGATCCGAAGGCA
* *
18278239 TTTGTGCGAGTTG-CT
66 TTTATGCGAG-TGACC
* * *
18278254 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGACTATATCCGGGCCAAG-TCCTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACCAAGATCC-GAAGGC
*
18278318 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
18278334 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
18278358 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 5 0.05
80 86 0.95
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACCAAGATCCGAAGGCA
TTTATGCGAGTGACC
Found at i:18281282 original size:40 final size:40
Alignment explanation
Indices: 18281238--18281425 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
18281228 GCAAACACAT
* * *
18281238 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
18281278 TTGCCTTCGGGTCTTAACCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
18281318 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
18281358 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
18281398 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
18281426 TCCAGTGCTC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:18282346 original size:105 final size:105
Alignment explanation
Indices: 18282164--18282372 Score: 409
Period size: 105 Copynumber: 2.0 Consensus size: 105
18282154 TTTACAGAAT
18282164 TCAAAATGTGTTGTATTTGATCTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATT
1 TCAAAATGTGTTGTATTTGATCTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATT
18282229 TTATCTTATAATAATTTTTGTACAATTTATAATGATTTTC
66 TTATCTTATAATAATTTTTGTACAATTTATAATGATTTTC
*
18282269 TCAAAATGTGTTGTATTTGATCTCATTTGAAACTAGACTCATTAAGTAGTCTAAGCATATAAATT
1 TCAAAATGTGTTGTATTTGATCTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATT
18282334 TTATCTTATAATAATTTTTGTACAATTTATAATGATTTT
66 TTATCTTATAATAATTTTTGTACAATTTATAATGATTTT
18282373 TTAAAAACAG
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.44
Consensus pattern (105 bp):
TCAAAATGTGTTGTATTTGATCTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAATT
TTATCTTATAATAATTTTTGTACAATTTATAATGATTTTC
Found at i:18285230 original size:48 final size:48
Alignment explanation
Indices: 18285159--18285439 Score: 289
Period size: 48 Copynumber: 5.9 Consensus size: 48
18285149 TAAATTACGA
* *
18285159 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATGTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * * *
18285207 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACGTCTCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * * ** *
18285255 ATTCCATGTACCAGGCATGGTCTTACACTAGCTCTCATAATGTA-GCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGGCCG
* * *
18285303 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * ** *
18285351 ATGCCATG-CCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGGCCG
* * *
18285398 ATGCCATGGCCCAGACATGGTCTTACACTAGCACATATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
18285440 CCCAATTTTC
Statistics
Matches: 189, Mismatches: 39, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
47 40 0.21
48 147 0.78
49 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:18285326 original size:96 final size:96
Alignment explanation
Indices: 18285159--18285439 Score: 345
Period size: 96 Copynumber: 2.9 Consensus size: 96
18285149 TAAATTACGA
* * * ** * *
18285159 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCACAT-GTCAAGGCCGATGCCATGTCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTA-GCTGATGCCATGTCCCAGAC
* * *
18285223 ATGGTCTTACACTAGCTCACGTCTCAATG-TCG
65 ATGGTCTTACACTAGCACACATATCAATGCT-G
* * *
18285255 ATTCCATGTACCAGGCATGGTCTTACACTAGCTCTCATAATGTAGCTGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGATGCCATGTCCCAGACA
18285320 TGGTCTTACACTAGCACACATATCAATGCTG
66 TGGTCTTACACTAGCACACATATCAATGCTG
* * * *
18285351 ATGCCATG-CCCAGACATGGTCTTACATTGGCTCTCATAATGT-GGTCGATGCCATGGCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCT-GATGCCATGTCCCAGAC
*
18285414 ATGGTCTTACACTAGCACATATATCA
65 ATGGTCTTACACTAGCACACATATCA
18285440 CCCAATTTTC
Statistics
Matches: 161, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
94 2 0.01
95 71 0.44
96 85 0.53
97 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGATGCCATGTCCCAGACA
TGGTCTTACACTAGCACACATATCAATGCTG
Found at i:18288235 original size:10 final size:10
Alignment explanation
Indices: 18288219--18288272 Score: 65
Period size: 10 Copynumber: 5.5 Consensus size: 10
18288209 TTTCATCTCC
18288219 ATTTATCTTT
1 ATTTATCTTT
*
18288229 ATGTATCTTT
1 ATTTATCTTT
**
18288239 AAATATCTTT
1 ATTTATCTTT
*
18288249 ATTTATCTGT
1 ATTTATCTTT
18288259 ATTTATCTTT
1 ATTTATCTTT
18288269 -TTTA
1 ATTTA
18288273 AATTTAAGTA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
9 4 0.11
10 33 0.89
ACGTcount: A:0.24, C:0.09, G:0.04, T:0.63
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:18290746 original size:33 final size:33
Alignment explanation
Indices: 18290708--18290935 Score: 266
Period size: 33 Copynumber: 7.0 Consensus size: 33
18290698 TTCTTTCTGA
* *
18290708 ATGGTACACACTAAGTATACCTTTCCTTTTCAT
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAT
*
18290741 ATGGTATACACAAAGTATACCCTTCCTTTTCAT
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAT
18290774 ATGGTATACACAAAGTATACCTTTCCTTTTCAT
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAT
18290807 ATGGTATACACAAAGTATACCTTTCCTTTTCA-
1 ATGGTATACACAAAGTATACCTTTCCTTTTCAT
* * * **
18290839 A-GTGTACACACAAAGTGTACATAACCTTTTCA-
1 ATG-GTATACACAAAGTATACCTTTCCTTTTCAT
* * * **
18290871 A-GTGTACACACAAAGTGTACATAACCTTTTCAT
1 ATG-GTATACACAAAGTATACCTTTCCTTTTCAT
* **
18290904 TTGGTATACACAAAGTATACCTAACCTTTTCA
1 ATGGTATACACAAAGTATACCTTTCCTTTTCA
18290936 CATTCGATAG
Statistics
Matches: 179, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
31 1 0.01
32 57 0.32
33 120 0.67
34 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.35
Consensus pattern (33 bp):
ATGGTATACACAAAGTATACCTTTCCTTTTCAT
Found at i:18290867 original size:32 final size:32
Alignment explanation
Indices: 18290831--18290935 Score: 156
Period size: 32 Copynumber: 3.2 Consensus size: 32
18290821 GTATACCTTT
18290831 CCTTTTCAAGTGTACACACAAAGTGTACATAA
1 CCTTTTCAAGTGTACACACAAAGTGTACATAA
18290863 CCTTTTCAAGTGTACACACAAAGTGTACATAA
1 CCTTTTCAAGTGTACACACAAAGTGTACATAA
** * * *
18290895 CCTTTTCATTTGGTATACACAAAGTATACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGTACATAA
18290928 CCTTTTCA
1 CCTTTTCA
18290936 CATTCGATAG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
32 41 0.61
33 26 0.39
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGTACATAA
Found at i:18291023 original size:29 final size:29
Alignment explanation
Indices: 18290928--18291012 Score: 143
Period size: 29 Copynumber: 2.9 Consensus size: 29
18290918 GTATACCTAA
*
18290928 CCTTTTCACATTCGATAGCCAAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
18290957 CCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
**
18290986 CCTTTTCACATTCGATAGGTGAAGCTA
1 CCTTTTCACATTCGATAGCCGAAGCTA
18291013 CCACTATTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCGAAGCTATC
Found at i:18291043 original size:31 final size:31
Alignment explanation
Indices: 18291006--18291209 Score: 302
Period size: 31 Copynumber: 6.6 Consensus size: 31
18290996 TTCGATAGGT
* *
18291006 GAAGCTACCACTATTCACTGATTAGGTAG-C
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
* * *
18291036 TAGAGCTACCAGTTTTCACTAATCAGGTAGCC
1 GA-AGCTACCACTTTTCACTGATCAGGTAGCC
* *
18291068 GAAGCTACCACTTTTCACTAATCAGGTAGCT
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
* *
18291099 GAAGGTACTACTTTTCACTGATCAGGTAGCC
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
18291130 GAAGCTACCACTTTTCACTGATCAGGTAGCC
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
*
18291161 GAAGTTACCACTTTTCACTGATCAGGTAGCC
1 GAAGCTACCACTTTTCACTGATCAGGTAGCC
18291192 GAAGCTACCACTTTTCAC
1 GAAGCTACCACTTTTCAC
18291210 ATTGCACACA
Statistics
Matches: 156, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
30 1 0.01
31 153 0.98
32 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GAAGCTACCACTTTTCACTGATCAGGTAGCC
Found at i:18291127 original size:93 final size:93
Alignment explanation
Indices: 18290972--18291209 Score: 313
Period size: 93 Copynumber: 2.6 Consensus size: 93
18290962 TCACATTCGA
* * * * *
18290972 TAGCCGAAGCTATCC-CTTTTCAC-ATTC-GATAGGTGAAGCTACCACTATTCACTGATTAGGTA
1 TAGCCGAAGCTA-CCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTA
*
18291034 GCTAG-AGCTACCAGTTTTCACTAATCAGG
65 GC-AGAAGCTACCACTTTTCACTAATCAGG
* *
18291063 TAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGGTACTACTTTTCACTGATCAGGTAG
1 TAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAG
* *
18291128 CCGAAGCTACCACTTTTCACTGATCAGG
66 CAGAAGCTACCACTTTTCACTAATCAGG
* * *
18291156 TAGCCGAAGTTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCAC
1 TAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCAC
18291210 ATTGCACACA
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
90 2 0.02
91 20 0.16
92 4 0.03
93 102 0.80
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (93 bp):
TAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAG
CAGAAGCTACCACTTTTCACTAATCAGG
Found at i:18292904 original size:42 final size:42
Alignment explanation
Indices: 18292797--18292914 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 42
18292787 GTACCAATCT
* * **
18292797 CATATCCCAAATATGGTCTTACATGTAATCTTGTATCAATGC
1 CATATCCCAGATATGGTCTTACACGTAATCTCATATCAATGC
* * *
18292839 CAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCAATGC
18292882 CATATCCCAGATATGGTCTTACACGTAATCTCA
1 CATATCCCAGATATGGTCTTACACGTAATCTCA
18292915 GTAACCCTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGTAATCTCATATCAATGC
Found at i:18295777 original size:42 final size:42
Alignment explanation
Indices: 18295691--18295794 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 42
18295681 ACGACCTGAA
* * * *
18295691 CACACGCCCATGTCGTTGCCCATGTGGCTCATATGAACTGGG
1 CACACGCCCATGTCGTTGCCAATGTGGCTCACACGAACTAGG
**
18295733 CACACGCCCATGTCGTTGCCAATGTGGCTCACACGGCCTAGG
1 CACACGCCCATGTCGTTGCCAATGTGGCTCACACGAACTAGG
* * *
18295775 CACACACTCATGTCCTTGCC
1 CACACGCCCATGTCGTTGCC
18295795 TGTGAGGCTC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.19, C:0.36, G:0.23, T:0.22
Consensus pattern (42 bp):
CACACGCCCATGTCGTTGCCAATGTGGCTCACACGAACTAGG
Found at i:18300061 original size:48 final size:43
Alignment explanation
Indices: 18299937--18300063 Score: 119
Period size: 48 Copynumber: 2.8 Consensus size: 43
18299927 CGTGAGCCGG
* * *
18299937 TGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGC-ACGAGAGGTGTCAA
* * *
18299981 TATAAGATCATGTCTGGGATATGGCATTGGCACGTATAGAGGTGTCAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCACG---AGAGGTGTCAA
*
18300029 TGTAAGACCATGTCTGGGACATAGTATCGGCACGA
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCACGA
18300064 ATATGTGAGA
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
44 6 0.09
45 16 0.24
46 7 0.11
48 37 0.56
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (43 bp):
TGTAAGACATGTCTGGGACATGCATCGGCACGAGAGGTGTCAA
Found at i:18307750 original size:46 final size:45
Alignment explanation
Indices: 18307606--18307819 Score: 195
Period size: 46 Copynumber: 4.6 Consensus size: 45
18307596 TTTGTGTGCC
* * *
18307606 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCTCGA-GATGTA-AGCT
* * * **
18307652 AGAGTAAGACCATGTCTGGGACATGACATCGGCATTGAGATGGGAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATC-GCCTCGAGATGTAAGCT
*
18307700 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCA-TCGCCTCGAGATGTAAGCT
* *
18307746 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGT--G-T
1 AGTGTAAGACATGTCTGGGACATGCATCGCCT-CGAGATGTAAGCT
18307789 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 -AGTGTAAGA-CATGTCTGGGACAT-GCATC
18307820 AGCATTATAC
Statistics
Matches: 141, Mismatches: 17, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 17 0.12
46 61 0.43
47 31 0.22
48 19 0.13
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATGTAAGCT
Found at i:18309870 original size:140 final size:140
Alignment explanation
Indices: 18309593--18309950 Score: 397
Period size: 140 Copynumber: 2.5 Consensus size: 140
18309583 TTATTTGTGT
* * * *
18309593 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATAAT--GAGCCAGTGTAAGACCATGT
* **
18309657 CTGGGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGCACATACATCGGCC
64 ATGGGACATGGCATCAGCACGGAGACGAGAGCTAGTGTAAGACATGTCTGGCACATACATCGGCC
18309722 TCGAGATTT-A-A
129 TC-AGATTTCATA
*
18309733 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-AATGTA-TCAGTGTAAGACCATGTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATAATG-AGCCAGTGTAAGACCATGTA
* * * * **
18309796 TGGGACATGGCATCAGCACGGATATGTGAGAGCTAGTGTAAGACCATGTTTGGGACATGGAGTCG
65 TGGGACATGGCATCAGCACGGAGA--CGAGAGCTAGTGTAAGA-CATGTCTGGCACATACA-TCG
18309861 GCCTC-GATTTCGATA
126 GCCTCAGATTTC-ATA
* * *
18309876 GTCAGTGTAAGACCATGTCTGGGACATAGCATCGACT-TGATAGATGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGATA-ATGAGCCAGTGTAAGACCATG
*
18309940 TTTGGGACATG
63 TATGGGACATG
18309951 TATCGGTATT
Statistics
Matches: 185, Mismatches: 19, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
138 37 0.20
139 1 0.01
140 58 0.31
141 14 0.08
142 9 0.05
143 12 0.06
144 16 0.09
145 10 0.05
146 28 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (140 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATAATGAGCCAGTGTAAGACCATGTAT
GGGACATGGCATCAGCACGGAGACGAGAGCTAGTGTAAGACATGTCTGGCACATACATCGGCCTC
AGATTTCATA
Found at i:18309950 original size:96 final size:94
Alignment explanation
Indices: 18309595--18309956 Score: 256
Period size: 94 Copynumber: 3.9 Consensus size: 94
18309585 ATTTGTGTGC
* *
18309595 CAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCAC--ATTATG-AGAGCCAGTGTAAGACCAT
1 CAGTGTAAGACCATGTATGGGACATAGCATCAG-CACGGA-TATGTAGAGCCAGTGTAAGACCAT
* * * * * *
18309655 -TTCTGGGACATGGCATCAGC-ATTGAGACGAGAG
64 GTT-TGGGACAT-GCATCGGCTA-CGAAATG-TAT
* * * *
18309688 CTAGTGTAAGA-CATGTCTGGCACATA-CATCGGCCTCGAGAT-T-TA-AGCCAGTGTAAGA-CA
1 C-AGTGTAAGACCATGTATGGGACATAGCATCAG-CACG-GATATGTAGAGCCAGTGTAAGACCA
*
18309747 TGTCTGGGACATGCATCGGCTACGAAATGTAT
63 TGTTTGGGACATGCATCGGCTACGAAATGTAT
* *
18309779 CAGTGTAAGACCATGTATGGGACATGGCATCAGCACGGATATGTGAGAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTATGGGACATAGCATCAGCACGGATATGT-AGAGCCAGTGTAAGACCATG
* **
18309844 TTTGGGACATGGAGTCGGCCT-CGATTTCGATAGT
65 TTTGGGACATGCA-TCGG-CTACGAAAT-G-TA-T
* *
18309878 CAGTGTAAGACCATGTCTGGGACATAGCATC-G-ACTTGATA-G-ATGAGCCAGTGTAAGACCAT
1 CAGTGTAAGACCATGTATGGGACATAGCATCAGCAC-GGATATGTA-GAGCCAGTGTAAGACCAT
*
18309939 GTTTGGGACATGTATCGG
64 GTTTGGGACATGCATCGG
18309957 TATTATACCC
Statistics
Matches: 222, Mismatches: 25, Indels: 42
0.77 0.09 0.15
Matches are distributed among these distances:
90 12 0.05
91 18 0.08
92 17 0.08
93 14 0.06
94 56 0.25
95 22 0.10
96 39 0.18
97 7 0.03
98 7 0.03
99 30 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
CAGTGTAAGACCATGTATGGGACATAGCATCAGCACGGATATGTAGAGCCAGTGTAAGACCATGT
TTGGGACATGCATCGGCTACGAAATGTAT
Found at i:18312003 original size:21 final size:20
Alignment explanation
Indices: 18311977--18312016 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
18311967 GTTATAATGA
18311977 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCGTG-TGCCCTT
18311998 CCACACAGGCGTGTGCCCT
1 CCACACAGGCGTGTGCCCT
18312017 GTTTCAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (20 bp):
CCACACAGGCGTGTGCCCTT
Found at i:18322033 original size:46 final size:49
Alignment explanation
Indices: 18321903--18322039 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 49
18321893 NNNNNNNNNN
*
18321903 TTCGCATCCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAG
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAG
* * * *
18321954 TT-ACAT-C-TCA-TGAACTCGGACTCAACTCGACGAGTTTGGA-C-A-
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAG
18321996 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
18322040 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 28 0.38
47 27 0.37
48 2 0.03
49 1 0.01
50 3 0.04
51 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (49 bp):
TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAG
Found at i:18322058 original size:46 final size:44
Alignment explanation
Indices: 18321915--18322058 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
18321905 CGCATCCATA
*
18321915 AGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
18321962 CA-TGAACTCGGACTCAACTCGACGAGTTTGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
18322008 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
18322054 AGTGA
1 AGTGA
18322059 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:18329124 original size:46 final size:45
Alignment explanation
Indices: 18329031--18329116 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
18329021 TACATCTCAC
* * *
18329031 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
18329077 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
18329117 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:18343931 original size:20 final size:20
Alignment explanation
Indices: 18343906--18343957 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
18343896 GAGGCAAAAC
18343906 ACACGCCTGTGTGCTTAGGG
1 ACACGCCTGTGTGCTTAGGG
*
18343926 ACACGCCCGTGTGCTTAGGG
1 ACACGCCTGTGTGCTTAGGG
18343946 ACACGCCTGTGT
1 ACACGCCTGTGT
18343958 CCCTCACCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.15, C:0.29, G:0.33, T:0.23
Consensus pattern (20 bp):
ACACGCCTGTGTGCTTAGGG
Found at i:18352508 original size:20 final size:20
Alignment explanation
Indices: 18352469--18352508 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
18352459 CAAAACAGGT
*
18352469 AACAAGCCCGTGTGGCTTGG
1 AACAAGCCCGTATGGCTTGG
* *
18352489 AACACGCCCGTATGGGTTGG
1 AACAAGCCCGTATGGCTTGG
18352509 CTTTGTGGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.20, C:0.25, G:0.35, T:0.20
Consensus pattern (20 bp):
AACAAGCCCGTATGGCTTGG
Found at i:18352879 original size:284 final size:284
Alignment explanation
Indices: 18352384--18352937 Score: 964
Period size: 284 Copynumber: 2.0 Consensus size: 284
18352374 TAAAAGGCCT
*
18352384 AAAACATGCATTGGAAGTGGTTCGGGACTAAACCGAGAATTTAGAAAATTCTACAACACTTAGAA
1 AAAACATGCATTGGAAGTGGTTCAGGACTAAACCGAGAATTTAGAAAATTCTACAACACTTAGAA
**
18352449 AATTTTTCATCAAAACAGGTAACAAGCCCGTGTGGCTTGGAACACGCCCGTATGGGTTGGCTTTG
66 AATTTTTCATCAAAACAGGTAACAAGCCCGTGTGGCTTGGAACACGCCCGTATGGGTTGGCCGTG
*
18352514 TGGTCACACACACCCGTGTCTTTAACCCATGTAACTCTCTATTTATGACATCATGCAACAAAAGA
131 TGGTCACACACACCCGTGTCCTTAACCCATGTAACTCTCTATTTATGACATCATGCAACAAAAGA
* **
18352579 AGTCACACAGCCAAGTTACACGCTCGTGTGCTAGGCCGTGTGGTGAATATAATTTTCAAAATTTT
196 AGTCACACAGCCAAGTTACACGCCCGTGTGCTAGGCCGTGTGGCAAATATAATTTTCAAAATTTT
18352644 TCATAAAATAAACCTACGATGCCC
261 TCATAAAATAAACCTACGATGCCC
* *
18352668 AAAACATGCATTGGAGGTGGTTCAGGACTAAACCGATAATTTAGAAAATTCTACAACACTTAGAA
1 AAAACATGCATTGGAAGTGGTTCAGGACTAAACCGAGAATTTAGAAAATTCTACAACACTTAGAA
* * * * *
18352733 ATTTTTTCATCAAAACAGGTAACAAGCCTGTGTGGCTTGGGACACGCTCGTGTGGGTTGGCCGTG
66 AATTTTTCATCAAAACAGGTAACAAGCCCGTGTGGCTTGGAACACGCCCGTATGGGTTGGCCGTG
* *
18352798 TGGTCACACACGCCCGTGTCCTTAACCCATGTAACTCTCTATTTATGACGTCATGCAACAAAAGA
131 TGGTCACACACACCCGTGTCCTTAACCCATGTAACTCTCTATTTATGACATCATGCAACAAAAGA
18352863 AGTCACACAGCCAAGTTACACGCCCGTGTGCTAGGCCGTGTGGCAAATATAATTTTCAAAATTTT
196 AGTCACACAGCCAAGTTACACGCCCGTGTGCTAGGCCGTGTGGCAAATATAATTTTCAAAATTTT
18352928 TCATAAAATA
261 TCATAAAATA
18352938 GGTGCAGACT
Statistics
Matches: 254, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
284 254 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27
Consensus pattern (284 bp):
AAAACATGCATTGGAAGTGGTTCAGGACTAAACCGAGAATTTAGAAAATTCTACAACACTTAGAA
AATTTTTCATCAAAACAGGTAACAAGCCCGTGTGGCTTGGAACACGCCCGTATGGGTTGGCCGTG
TGGTCACACACACCCGTGTCCTTAACCCATGTAACTCTCTATTTATGACATCATGCAACAAAAGA
AGTCACACAGCCAAGTTACACGCCCGTGTGCTAGGCCGTGTGGCAAATATAATTTTCAAAATTTT
TCATAAAATAAACCTACGATGCCC
Found at i:18357356 original size:19 final size:20
Alignment explanation
Indices: 18357327--18357364 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
18357317 CAATATTCAT
*
18357327 ATATTCTTTTATTTTTCAAC
1 ATATTCTTTTATTTATCAAC
18357347 ATATTC-TTTATTTATCAA
1 ATATTCTTTTATTTATCAA
18357365 TATTTTCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (20 bp):
ATATTCTTTTATTTATCAAC
Found at i:18357796 original size:19 final size:19
Alignment explanation
Indices: 18357769--18357805 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
18357759 CTTAAATACT
*
18357769 CAAAGTCACTTGTTCTTCC
1 CAAAATCACTTGTTCTTCC
18357788 CAAAATCACTTGTTCTTC
1 CAAAATCACTTGTTCTTC
18357806 TCTTCTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.30, G:0.08, T:0.38
Consensus pattern (19 bp):
CAAAATCACTTGTTCTTCC
Found at i:18360081 original size:10 final size:9
Alignment explanation
Indices: 18360056--18360080 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
18360046 TAATAATCAA
18360056 TTTTTTTCT
1 TTTTTTTCT
18360065 TTTTTTTCT
1 TTTTTTTCT
18360074 TTTTTTT
1 TTTTTTT
18360081 TATCAAGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:18368236 original size:18 final size:20
Alignment explanation
Indices: 18368200--18368246 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
18368190 AGTTGTAAGT
18368200 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
18368220 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
18368239 ATGATATA
1 AT-ATATA
18368247 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:18368676 original size:50 final size:50
Alignment explanation
Indices: 18368601--18368956 Score: 405
Period size: 50 Copynumber: 7.1 Consensus size: 50
18368591 GTGAGTCACG
*
18368601 TGTGTTGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* *
18368651 TGTGTAATACTAAGTGCAGGCTACTACGTGTACCATATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* ** * * * * * *
18368701 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCGCA
** ** * *
18368752 TGTGTAGTACTAAGTATAGGCTACTACGTGT-CTCAGACGGTTAAGTCACGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTGATAGGT--CGCA
*
18368804 --TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* * * * ***
18368852 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
18368902 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
18368952 TGTGT
1 TGTGT
18368957 TAGAATTAAG
Statistics
Matches: 246, Mismatches: 51, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
48 4 0.02
49 3 0.01
50 203 0.83
51 34 0.14
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
Found at i:18368870 original size:151 final size:150
Alignment explanation
Indices: 18368596--18368956 Score: 424
Period size: 151 Copynumber: 2.4 Consensus size: 150
18368586 TCATTGTGAG
* * ** *
18368596 TCACGTGTGTTGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGACGGATAAGTCGCA-GTGTAATAC
* *
18368661 TAAGTGCAGGCTACTACGTGTACCATATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
65 TAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
18368726 ATGCATACCCGTTAACTTCGA
130 ATGCATACCCGTTAACTTCGA
* * *
18368747 TCACGTGTGTAGTACTAAGTATAGGCTACTACGTGT-CTCAGACGGTTAAGTCACGCA-TGTAGT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTAC-CAGACGGATAAGT--CGCAGTGTAAT
18368810 ACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
63 ACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
* ** * * * ** *
18368875 CTACGTGTATCAGAT-GGTT-AA
128 CTATGCATACCCGTTAACTTCGA
* * ** *
18368896 GTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
1 -TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGACGGATAAGTCGCA-GTGT
18368957 TAGAATTAAG
Statistics
Matches: 177, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
148 4 0.02
149 1 0.01
150 48 0.27
151 120 0.68
153 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (150 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGACGGATAAGTCGCAGTGTAATACT
AAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
TGCATACCCGTTAACTTCGA
Found at i:18380460 original size:29 final size:27
Alignment explanation
Indices: 18380442--18380511 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
18380432 ATATTAAGTC
18380442 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
18380469 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
18380497 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
18380512 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:18380505 original size:28 final size:28
Alignment explanation
Indices: 18380442--18380539 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
18380432 ATATTAAGTC
*
18380442 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
18380469 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
18380497 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
18380526 CGCACACTTAGTGC
1 CGCACACTTAGTGC
18380540 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:18381200 original size:59 final size:59
Alignment explanation
Indices: 18381108--18381225 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
18381098 TCTTACAACC
18381108 ATTCTTGTTCAAAACATTAGAACCTTAACTAATACTTATAAATTGTCTCAAGGCCGAAT
1 ATTCTTGTTCAAAACATTAGAACCTTAACTAATACTTATAAATTGTCTCAAGGCCGAAT
*
18381167 ATTCTTGTTCAAACCATTAGAACCTTAACTAATACTTATAAATTGTCTCAAGGCCGAAT
1 ATTCTTGTTCAAAACATTAGAACCTTAACTAATACTTATAAATTGTCTCAAGGCCGAAT
18381226 GCATTCTTAC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (59 bp):
ATTCTTGTTCAAAACATTAGAACCTTAACTAATACTTATAAATTGTCTCAAGGCCGAAT
Found at i:18382498 original size:10 final size:11
Alignment explanation
Indices: 18382475--18382499 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18382465 CGAGGACTCC
18382475 AAAAACATTAA
1 AAAAACATTAA
18382486 AAAAACATTAA
1 AAAAACATTAA
18382497 AAA
1 AAA
18382500 CGGGGTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:18388967 original size:20 final size:20
Alignment explanation
Indices: 18388932--18388980 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
18388922 ATCATAGTCT
*
18388932 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
18388951 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
18388971 TTGCTTACTT
1 TTGCTTACTT
18388981 ATATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:18389307 original size:50 final size:50
Alignment explanation
Indices: 18389183--18389361 Score: 184
Period size: 50 Copynumber: 3.6 Consensus size: 50
18389173 GATAATAACA
* * *
18389183 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAC--
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
** *
18389232 TTTCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * ** ** *
18389282 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* *
18389332 TGCCAATGCCATGTCCTAGACATGGTCTTA
1 TGCCAATGCCATATCCCAGACATGGTCTTA
18389362 TGTGTGACCT
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
48 4 0.04
49 37 0.34
50 68 0.62
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:18389371 original size:50 final size:50
Alignment explanation
Indices: 18389235--18389377 Score: 187
Period size: 50 Copynumber: 2.9 Consensus size: 50
18389225 CCTGTACTTT
* * * **
18389235 CAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGC
* * *
18389285 CCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGC
* * *
18389335 CAATGCCATGTCCTAGACATGGTCTTATGTGTGACCTCTCATA
1 CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
18389378 ACCTCAATAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGC
Found at i:18389800 original size:30 final size:30
Alignment explanation
Indices: 18389766--18389824 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
18389756 TCCTTGACTC
18389766 AAAC-TTTGACAAAATTATAATTTTGCCCCT
1 AAACTTTTG-CAAAATTATAATTTTGCCCCT
* * *
18389796 AAACTTTTGCATATTTATACTTTTGCCCC
1 AAACTTTTGCAAAATTATAATTTTGCCCC
18389825 AAAGCTCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTATAATTTTGCCCCT
Found at i:18390157 original size:10 final size:11
Alignment explanation
Indices: 18390134--18390158 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18390124 CGAGGACTCC
18390134 AAAAACATTAA
1 AAAAACATTAA
18390145 AAAAACATTAA
1 AAAAACATTAA
18390156 AAA
1 AAA
18390159 CGGGGTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:18396626 original size:20 final size:20
Alignment explanation
Indices: 18396591--18396639 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
18396581 ATCATAGTCT
*
18396591 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
18396610 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
18396630 TTGCTTACTT
1 TTGCTTACTT
18396640 ATATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:18396906 original size:49 final size:49
Alignment explanation
Indices: 18396849--18397222 Score: 427
Period size: 49 Copynumber: 7.6 Consensus size: 49
18396839 ACATGCCAAA
18396849 GCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
* * * ** *
18396898 GCCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCCCAT
1 GCCATATCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAC--TTTCAAT
*
18396948 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
* * * ** *
18396997 GCCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCCCAT
1 GCCATATCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAC--TTTCAAT
*
18397047 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
* * * ** *
18397096 GCCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCCCAT
1 GCCATATCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAC--TTTCAAT
*
18397146 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
*
18397195 GCCATATCCCAGATATGGTCTTACATGG
1 GCCATATCCCAGACATGGTCTTACATGG
18397223 TACTTCCAAT
Statistics
Matches: 267, Mismatches: 43, Indels: 30
0.79 0.13 0.09
Matches are distributed among these distances:
48 12 0.04
49 135 0.51
50 108 0.40
51 12 0.04
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (49 bp):
GCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAAT
Found at i:18397020 original size:99 final size:99
Alignment explanation
Indices: 18396849--18397222 Score: 739
Period size: 99 Copynumber: 3.8 Consensus size: 99
18396839 ACATGCCAAA
*
18396849 GCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
18396914 GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
18396948 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
18397013 GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
18397047 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
18397112 GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
18397146 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
18397211 GGTCTTACATGG
66 GGTCTTACATGG
18397223 TACTTCCAAT
Statistics
Matches: 274, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 274 1.00
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (99 bp):
GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTACTTTCAATGCCATATCCCAGATAT
GGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
Found at i:18397235 original size:38 final size:38
Alignment explanation
Indices: 18397184--18397260 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
18397174 GATGTTTCCT
*
18397184 GTACTTTCAATGCCATATCCCAGATATGGTCTTACATG
1 GTACTTCCAATGCCATATCCCAGATATGGTCTTACATG
** *
18397222 GTACTTCCAATGCCATATCTTAGATATTGTCTTACATG
1 GTACTTCCAATGCCATATCCCAGATATGGTCTTACATG
18397260 G
1 G
18397261 GAGTTCTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (38 bp):
GTACTTCCAATGCCATATCCCAGATATGGTCTTACATG
Found at i:18397358 original size:50 final size:50
Alignment explanation
Indices: 18397228--18397372 Score: 155
Period size: 50 Copynumber: 2.9 Consensus size: 50
18397218 CATGGTACTT
* * * * * ** *
18397228 CCAATGCCATATCTTAGATATTGTCTTACATGGGAGTTCTCATATTGGTG
1 CCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATATCGGTG
* * * * *
18397278 CCCATGCAATTGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCA-TGTCCTAGACATGGTCTTACGTGGGACCTCTCATATCGGTG
*
18397329 CCAATGCCATGTCCTAGACATGGTCTTACGTGTGACCTCTCATA
1 CCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATA
18397373 ACCTCAATAA
Statistics
Matches: 75, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
50 38 0.51
51 37 0.49
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (50 bp):
CCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATATCGGTG
Found at i:18403425 original size:21 final size:21
Alignment explanation
Indices: 18403399--18403465 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
18403389 TTATTTTCAG
18403399 CAACTTCCTCTTCTTCAGCAA
1 CAACTTCCTCTTCTTCAGCAA
18403420 CAACTTCCTCTTC-T-A-CAA
1 CAACTTCCTCTTCTTCAGCAA
* * *
18403438 AAACTT-CTACTTCTGCAGCAT
1 CAACTTCCT-CTTCTTCAGCAA
18403459 CAACTTC
1 CAACTTC
18403466 TTTCTCAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
17 2 0.05
18 12 0.32
19 1 0.03
20 2 0.05
21 20 0.54
ACGTcount: A:0.27, C:0.36, G:0.04, T:0.33
Consensus pattern (21 bp):
CAACTTCCTCTTCTTCAGCAA
Found at i:18411975 original size:55 final size:55
Alignment explanation
Indices: 18411908--18412016 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
18411898 GTTCTTATCC
* **
18411908 AGACAGCTGTCAAGTGTGACGACAATTCTGAACGCAATCTGGAATTAACACATGT
1 AGACAGCTGTCAAGTGCGACGACAATTCTGAACGCAATCTAAAATTAACACATGT
* * * * *
18411963 AGACATCTGTCAAGTGCGGCGACAATTCTGGATGCAATCTAAAATTAACTCATG
1 AGACAGCTGTCAAGTGCGACGACAATTCTGAACGCAATCTAAAATTAACACATG
18412017 CAACGACATT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (55 bp):
AGACAGCTGTCAAGTGCGACGACAATTCTGAACGCAATCTAAAATTAACACATGT
Found at i:18413082 original size:19 final size:19
Alignment explanation
Indices: 18413060--18413097 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
18413050 TCAATCATCC
18413060 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
18413079 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
18413098 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:18422781 original size:19 final size:19
Alignment explanation
Indices: 18422759--18422796 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
18422749 TCAATCATCC
18422759 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
18422778 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
18422797 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:18424109 original size:177 final size:177
Alignment explanation
Indices: 18423813--18424165 Score: 661
Period size: 177 Copynumber: 2.0 Consensus size: 177
18423803 TCTCTGGTTA
* *
18423813 ATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACCGTTCTGGCCCTGTCCCACTAA
1 ATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACCATTCTGGCCCTGTCCCACAAA
* *
18423878 AATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTTACTTCCTCATGAAAGCAGACT
66 AATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTAGTTACTTCCTCATGAAAACAGACT
18423943 CATCGAGCTTCGATTACATAATTTATTCATCAATTAATTCCACTCCC
131 CATCGAGCTTCGATTACATAATTTATTCATCAATTAATTCCACTCCC
18423990 ATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACCATTCTGGCCCTGTCCCACAAA
1 ATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACCATTCTGGCCCTGTCCCACAAA
*
18424055 AATCTGTTTATCTCTTAATATACTGCCCATATGATCTTTTAGTTACTTCCTCATGAAAACAGACT
66 AATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTAGTTACTTCCTCATGAAAACAGACT
18424120 CATCGAGCTTCGATTACATAATTTATTCATCAATTAATTCCACTCC
131 CATCGAGCTTCGATTACATAATTTATTCATCAATTAATTCCACTCC
18424166 TACTATTTTT
Statistics
Matches: 171, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 171 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (177 bp):
ATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACCATTCTGGCCCTGTCCCACAAA
AATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTAGTTACTTCCTCATGAAAACAGACT
CATCGAGCTTCGATTACATAATTTATTCATCAATTAATTCCACTCCC
Found at i:18424903 original size:242 final size:242
Alignment explanation
Indices: 18424478--18424959 Score: 883
Period size: 242 Copynumber: 2.0 Consensus size: 242
18424468 GGAAACACCG
*
18424478 AGTGAGTTTATAACTCAGTAAGTCATAAGCAATGCACTACCATCTATCAACAACATTATCACAAG
1 AGTGAGTTTATAACTCAGTAAGTCATAAGCAATGCACTACCATCCATCAACAACATTATCACAAG
18424543 AGGAAACAAAATGGAACGAGACAATTTACTCCATCCATACCGAACCATACCATAGTTCCTCCAAC
66 AGGAAACAAAATGGAACGAGACAATTTACTCCATCCATACCGAACCATACCATAGTTCCTCCAAC
* *
18424608 TTATCAATTCAATTTCATATCAATTCATGCATTCACATTCTATATACTCATCAATAGGACATTGA
131 CTATCAATTCAATTTCATATCAATTCATGCATTCACATTCCATATACTCATCAATAGGACATTGA
*
18424673 AGCAATCTCATAAATCGATTTATTTTCGTTACAATCAAACGACTATA
196 AGCAATCTCATAAATCAATTTATTTTCGTTACAATCAAACGACTATA
*
18424720 AGTGAGTTTATAACTCAGTAAGTCATAAGCAATGCACTACCATCCATCAATAACATTATCACAAG
1 AGTGAGTTTATAACTCAGTAAGTCATAAGCAATGCACTACCATCCATCAACAACATTATCACAAG
18424785 AGGAAACAAAATGGAACGAGACAATTTACTCCATCCATACCGAACCATACCATAGTTCCTCCAAC
66 AGGAAACAAAATGGAACGAGACAATTTACTCCATCCATACCGAACCATACCATAGTTCCTCCAAC
* *
18424850 CTATCGATTCAGTTTCATATCAATTCATGCATTCACATTCCATATACTCATCAATAGGACATTGA
131 CTATCAATTCAATTTCATATCAATTCATGCATTCACATTCCATATACTCATCAATAGGACATTGA
* *
18424915 AGCATTTTCATAAATCAATTTATTTTCGTTACAATCAAACGACTA
196 AGCAATCTCATAAATCAATTTATTTTCGTTACAATCAAACGACTA
18424960 AACGGCCTTT
Statistics
Matches: 231, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
242 231 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (242 bp):
AGTGAGTTTATAACTCAGTAAGTCATAAGCAATGCACTACCATCCATCAACAACATTATCACAAG
AGGAAACAAAATGGAACGAGACAATTTACTCCATCCATACCGAACCATACCATAGTTCCTCCAAC
CTATCAATTCAATTTCATATCAATTCATGCATTCACATTCCATATACTCATCAATAGGACATTGA
AGCAATCTCATAAATCAATTTATTTTCGTTACAATCAAACGACTATA
Found at i:18425202 original size:27 final size:27
Alignment explanation
Indices: 18425172--18425437 Score: 237
Period size: 27 Copynumber: 9.6 Consensus size: 27
18425162 ATATTGAGCC
* * *
18425172 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
18425199 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
18425226 CGCACACTTAGTGCTACATAGTCAGACTCGCACT
1 CGCACACTTAGTGCTAC--A-T-A-A-TC-AACT
* *
18425260 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
18425287 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
18425314 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
18425342 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
18425369 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
18425396 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
18425423 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18425438 GTACAATTTA
Statistics
Matches: 197, Mismatches: 32, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
27 145 0.74
28 26 0.13
29 1 0.01
30 2 0.01
31 2 0.01
32 2 0.01
33 2 0.01
34 17 0.09
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:18425273 original size:34 final size:33
Alignment explanation
Indices: 18425225--18425291 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
18425215 CGTAATCAAA
* *
18425225 TCGCACACTTAGTGCTACATAGTCAGACTCGCAC
1 TCGCACACTCAGTGCTACATAATCA-ACTCGCAC
*
18425259 TCGCACACTCAGTGCTATATAATCAACTCGCAC
1 TCGCACACTCAGTGCTACATAATCAACTCGCAC
18425292 ACTTAGTGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 8 0.27
34 22 0.73
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (33 bp):
TCGCACACTCAGTGCTACATAATCAACTCGCAC
Found at i:18425321 original size:88 final size:88
Alignment explanation
Indices: 18425172--18425346 Score: 323
Period size: 88 Copynumber: 2.0 Consensus size: 88
18425162 ATATTGAGCC
*
18425172 CGCACACTCAGTGCTATATAATCATCTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAG
1 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAG
*
18425237 TGCTACATAGTCAGACTCGCACT
66 TGCTACATAGTCAAACTCGCACT
*
18425260 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAG
1 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAG
18425325 TGCTACATAGTCAAACTCGCAC
66 TGCTACATAGTCAAACTCGCAC
18425347 ACTTAGTGCC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (88 bp):
CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAG
TGCTACATAGTCAAACTCGCACT
Found at i:18425399 original size:82 final size:82
Alignment explanation
Indices: 18425172--18425436 Score: 293
Period size: 88 Copynumber: 3.2 Consensus size: 82
18425162 ATATTGAGCC
* * * *
18425172 CGCACACTCAGTGCTATATAATCATCTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCCACATAATCAACTCGCACACTTAGTG-CATCGTAATCAAATCGCACACTTA
18425236 GTGCTACATAGTCAGACTCGCACT
65 GTGCTACATAGTCA-A-----ACT
* * *
18425260 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCCACATAATCAACTCGCACACTTAGTGCAT-CGTAATCAAATCGCACACTTA
18425324 GTGCTACATAGTCAAACT
65 GTGCTACATAGTCAAACT
* ** * * * **
18425342 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
1 CGCACACTTAGTGCCACATAATCAACTCGCACACTTAGTGCATCGTAATCAAATCGCACACTTAG
*
18425407 TGCAACATAGTCAAA-T
66 TGCTACATAGTCAAACT
18425423 CGCACACTTAGTGC
1 CGCACACTTAGTGC
18425437 TGTACAATTT
Statistics
Matches: 161, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
81 15 0.09
82 69 0.43
83 1 0.01
87 2 0.01
88 74 0.46
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCCACATAATCAACTCGCACACTTAGTGCATCGTAATCAAATCGCACACTTAG
TGCTACATAGTCAAACT
Found at i:18425841 original size:205 final size:208
Alignment explanation
Indices: 18425447--18425850 Score: 733
Period size: 205 Copynumber: 2.0 Consensus size: 208
18425437 TGTACAATTT
18425447 AATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATACCCGCACGTTTAGTGCCGAG
1 AATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATACCCGCACGTTTAGTGCCGAG
*
18425512 ATCAACAACTCAGTACATCTTACCTCTTTTCTTTTCATTCAACAATTTCATCATCACATACGTAC
66 ATCAACAACTCAGTACATCTTACCTCTTCTCTTTTCATTCAACAATTTCATCATCACATACGTAC
*
18425577 ATGCATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACATAAACATTATGACCAT
131 ATGCA-ATATATATATGTATATTTATTCATTCCAATCAGCATCAATACATAAACATTATGACCAT
18425642 TTGAAATAATACCA
195 TTGAAATAATACCA
18425656 AATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTAT-CCCGCACGTTTAGTGCCGAG
1 AATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATACCCGCACGTTTAGTGCCGAG
* *
18425720 ATCAACAACTCATTACATCTTACCTCTTCTC-TTTCATTCAACAATTTCATCATCGCATACGTAC
66 ATCAACAACTCAGTACATCTTACCTCTTCTCTTTTCATTCAACAATTTCATCATCACATACGTAC
*
18425784 ATGC-ATATATATATGTATATTTATTCATTCCAATCAGCATCAATACATACACATTATGACCATT
131 ATGCAATATATATATGTATATTTATTCATTCCAATCAGCATCAATACATAAACATTATGACCATT
18425848 TGA
196 TGA
18425851 TATACTACAC
Statistics
Matches: 190, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
205 61 0.32
207 36 0.19
208 49 0.26
209 44 0.23
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.33
Consensus pattern (208 bp):
AATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATACCCGCACGTTTAGTGCCGAG
ATCAACAACTCAGTACATCTTACCTCTTCTCTTTTCATTCAACAATTTCATCATCACATACGTAC
ATGCAATATATATATGTATATTTATTCATTCCAATCAGCATCAATACATAAACATTATGACCATT
TGAAATAATACCA
Found at i:18430895 original size:27 final size:27
Alignment explanation
Indices: 18430843--18430897 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
18430833 TTGTATAAGT
*
18430843 AGCCCAAATATCACAACTTGTATGAGC
1 AGCCCAAATATCACAACTTCTATGAGC
* * *
18430870 AGCCCAAATATCATAGCTTCTGTGAGC
1 AGCCCAAATATCACAACTTCTATGAGC
18430897 A
1 A
18430898 AATCGAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (27 bp):
AGCCCAAATATCACAACTTCTATGAGC
Done.