Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 64 of 126
Found at i:18713691 original size:13 final size:13
Alignment explanation
Indices: 18713673--18713698 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18713663 CTACAACCCT
18713673 TGAATTGAGTCTC
1 TGAATTGAGTCTC
18713686 TGAATTGAGTCTC
1 TGAATTGAGTCTC
18713699 ACAATATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
TGAATTGAGTCTC
Found at i:18717191 original size:24 final size:23
Alignment explanation
Indices: 18717148--18717192 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
18717138 TCACTTTGGA
18717148 ATTCAACATTTTAAATATTAACT
1 ATTCAACATTTTAAATATTAACT
18717171 ATTCAA-ATTTTAACAATATTAA
1 ATTCAACATTTT-A-AATATTAA
18717193 TATAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 7 0.35
24 8 0.40
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (23 bp):
ATTCAACATTTTAAATATTAACT
Found at i:18731746 original size:24 final size:26
Alignment explanation
Indices: 18731714--18731762 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
18731704 ATATTTACTG
*
18731714 ATTTTATATTT-CTTAT-TTATTATA
1 ATTTTATATTTAATTATCTTATTATA
18731738 ATTTTATATTTAATTATCTTATTAT
1 ATTTTATATTTAATTATCTTATTAT
18731763 TTTTTAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.50
25 4 0.18
26 7 0.32
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (26 bp):
ATTTTATATTTAATTATCTTATTATA
Found at i:18731766 original size:24 final size:23
Alignment explanation
Indices: 18731714--18731774 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 23
18731704 ATATTTACTG
*
18731714 ATTTTATATTTCTTATTTATTAT
1 ATTTTATATTTATTATTTATTAT
18731737 AATTTTATATTTAATTATCTTATTAT
1 -ATTTTATATTT-ATTAT-TTATTAT
*
18731763 TTTTTAATATTT
1 ATTTT-ATATTT
18731775 GCTTTATAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 11 0.34
25 8 0.25
26 13 0.41
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (23 bp):
ATTTTATATTTATTATTTATTAT
Found at i:18735427 original size:20 final size:20
Alignment explanation
Indices: 18735390--18735427 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
18735380 TGATGGGGAG
*
18735390 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
18735410 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
18735428 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:18737786 original size:20 final size:22
Alignment explanation
Indices: 18737745--18737789 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 22
18737735 TATCCCTTGT
18737745 TTGTTATGGAGTCGAAATCAAC
1 TTGTTATGGAGTCGAAATCAAC
18737767 TTGTT-TGGAG-CG-AATGCAAC
1 TTGTTATGGAGTCGAAAT-CAAC
18737787 TTG
1 TTG
18737790 GTCATAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 5 0.23
22 5 0.23
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (22 bp):
TTGTTATGGAGTCGAAATCAAC
Found at i:18742939 original size:20 final size:20
Alignment explanation
Indices: 18742916--18742957 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
18742906 CAGTGCATTA
18742916 AACATAAAAGTGGGAGAAGC
1 AACATAAAAGTGGGAGAAGC
18742936 AACATAAAAGTGGGAGAAGC
1 AACATAAAAGTGGGAGAAGC
18742956 AA
1 AA
18742958 TCATGAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.10, G:0.29, T:0.10
Consensus pattern (20 bp):
AACATAAAAGTGGGAGAAGC
Found at i:18744279 original size:14 final size:14
Alignment explanation
Indices: 18744260--18744296 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
18744250 CATAGCTCAT
18744260 TGGAGAAAATAGAG
1 TGGAGAAAATAGAG
18744274 TGGAGAAAATAGAG
1 TGGAGAAAATAGAG
*
18744288 AGGAGAAAA
1 TGGAGAAAA
18744297 GAAACAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.35, T:0.11
Consensus pattern (14 bp):
TGGAGAAAATAGAG
Found at i:18751877 original size:15 final size:15
Alignment explanation
Indices: 18751857--18751888 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
18751847 AATTTATTTT
18751857 TATATAAAAAATTAA
1 TATATAAAAAATTAA
*
18751872 TATATAAAAAGTTAA
1 TATATAAAAAATTAA
18751887 TA
1 TA
18751889 CGGGCTGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
TATATAAAAAATTAA
Found at i:18756835 original size:24 final size:22
Alignment explanation
Indices: 18756808--18756861 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 22
18756798 AATATGATTT
18756808 TTTTATATTTATATATTTAATTA
1 TTTTAT-TTTATATATTTAATTA
*
18756831 CTTTTAGTTTTATTTATTTAATTA
1 -TTTTA-TTTTATATATTTAATTA
18756855 TTTTATT
1 TTTTATT
18756862 AATTGAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 2 0.07
23 5 0.18
24 20 0.71
25 1 0.04
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTATTTTATATATTTAATTA
Found at i:18757122 original size:30 final size:29
Alignment explanation
Indices: 18757053--18757126 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 29
18757043 TTTAATAAAT
*
18757053 TTATGTACCAAATTGAACATAAAAAAAGC
1 TTATGTACCAAATTGAACAAAAAAAAAGC
*
18757082 TTAGGTACCAAATTAGAA-AAAAAAACAAG-
1 TTATGTACCAAATT-GAACAAAAAAA-AAGC
18757111 TTCATGTACCAAATTG
1 TT-ATGTACCAAATTG
18757127 GGCCAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
29 22 0.56
30 17 0.44
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.24
Consensus pattern (29 bp):
TTATGTACCAAATTGAACAAAAAAAAAGC
Found at i:18757147 original size:28 final size:28
Alignment explanation
Indices: 18757102--18757168 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
18757092 AATTAGAAAA
*
18757102 AAAAACAAGTTCATGTACCAAATTGGGCC
1 AAAAA-AAGTTCAGGTACCAAATTGGGCC
18757131 AAAAAAAGTTCAGGTACCAAATTGGGCC
1 AAAAAAAGTTCAGGTACCAAATTGGGCC
18757159 AAAAAAAGTT
1 AAAAAAAGTT
18757169 TAGATTCCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.19
Consensus pattern (28 bp):
AAAAAAAGTTCAGGTACCAAATTGGGCC
Found at i:18757178 original size:28 final size:28
Alignment explanation
Indices: 18757102--18757181 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 28
18757092 AATTAGAAAA
18757102 AAAAACAAGTTCATG-TACCAAATTGGGCC
1 AAAAA-AAGTTCA-GATACCAAATTGGGCC
*
18757131 AAAAAAAGTTCAGGTACCAAATTGGGCC
1 AAAAAAAGTTCAGATACCAAATTGGGCC
* *
18757159 AAAAAAAGTTTAGATTCCAAATT
1 AAAAAAAGTTCAGATACCAAATT
18757182 AGAAAAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 1 0.02
28 41 0.87
29 5 0.11
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (28 bp):
AAAAAAAGTTCAGATACCAAATTGGGCC
Found at i:18758463 original size:28 final size:30
Alignment explanation
Indices: 18758420--18758477 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
18758410 TAATAGCTCA
* *
18758420 GTGATTTAAATAAAAAAC-TTTGAATAGTT
1 GTGACTTAAATAAAAAACTTTTGAACAGTT
18758449 GTGACTTAAAT-AAAAACTTTTGAACAGTT
1 GTGACTTAAATAAAAAACTTTTGAACAGTT
18758478 CAATGACCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (30 bp):
GTGACTTAAATAAAAAACTTTTGAACAGTT
Found at i:18766510 original size:3 final size:3
Alignment explanation
Indices: 18766502--18766531 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
18766492 AATATCTTAA
*
18766502 AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
18766532 TCTAGTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:18776822 original size:2 final size:2
Alignment explanation
Indices: 18776815--18776839 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
18776805 GAAATTAGCA
18776815 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
18776840 AATTTCAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:18782718 original size:14 final size:14
Alignment explanation
Indices: 18782693--18782728 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
18782683 AGTCATTAAA
18782693 TTATTT-AAAAAAT
1 TTATTTAAAAAAAT
18782706 TTATTTAAAAAAAT
1 TTATTTAAAAAAAT
18782720 TTATTTAAA
1 TTATTTAAA
18782729 TCATTAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TTATTTAAAAAAAT
Found at i:18785035 original size:60 final size:61
Alignment explanation
Indices: 18784942--18785056 Score: 164
Period size: 60 Copynumber: 1.9 Consensus size: 61
18784932 TATATGGTTT
* *
18784942 TTTCTTTTTTTGGTCACCTATCTATAAACAGTTACAAAATGGTCATC-CAACTATTAGTAAA
1 TTTCTTTTTTTGGTCACCTAACTATAAACAGTTACAAAATGGACA-CACAACTATTAGTAAA
*
18785003 TTTC-TTTTTTGGTCACCTAACTATGAAA-AGTTATAAAATGGACACACAACTATT
1 TTTCTTTTTTTGGTCACCTAACTAT-AAACAGTTACAAAATGGACACACAACTATT
18785057 CAATTTTGTC
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
59 1 0.02
60 41 0.84
61 7 0.14
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.38
Consensus pattern (61 bp):
TTTCTTTTTTTGGTCACCTAACTATAAACAGTTACAAAATGGACACACAACTATTAGTAAA
Found at i:18785213 original size:60 final size:59
Alignment explanation
Indices: 18785119--18785265 Score: 197
Period size: 60 Copynumber: 2.4 Consensus size: 59
18785109 AAAATTTAAG
* *
18785119 ATAGTTGGGTGACCGAAAAAGACAAAATTGAATAGTTGAGTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCAAAAAAGA-AAAACTGAATAGTTGAGTGACCATTTTGTAACTTTTC
*
18785179 ATAGTTGGGTGACCAAAAAAGAAAATCACT-AATAGTTGGGTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCAAAAAAGAAAA--ACTGAATAGTTGAGTGACCATTTTGTAACTTTTC
* * *
18785239 ATAGCTAGGTGATCAAAAAAGGAAAAA
1 ATAGTTGGGTGACCAAAAAA-GAAAAA
18785266 AATCATAGTT
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
59 4 0.05
60 67 0.86
61 7 0.09
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.29
Consensus pattern (59 bp):
ATAGTTGGGTGACCAAAAAAGAAAAACTGAATAGTTGAGTGACCATTTTGTAACTTTTC
Found at i:18788457 original size:31 final size:30
Alignment explanation
Indices: 18788422--18788501 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 30
18788412 CCATTAGATA
18788422 TTTAATTATTTTTTAAAATTT-AAAATATGTT
1 TTTAA-TATTTTTTAAAATTTAAAAATAT-TT
* **
18788453 TTTAATACTTTTTAATTTTTCAAAAATATTT
1 TTTAATATTTTTTAAAATTT-AAAAATATTT
* *
18788484 TTTAAAATTTTTAAAAAT
1 TTTAATATTTTTTAAAAT
18788502 CAATTAATTG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
30 12 0.31
31 20 0.51
32 7 0.18
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (30 bp):
TTTAATATTTTTTAAAATTTAAAAATATTT
Found at i:18788467 original size:30 final size:30
Alignment explanation
Indices: 18788422--18788499 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
18788412 CCATTAGATA
*
18788422 TTTAATTATTTTTTAAAATTT-AAAATATGTT
1 TTTAA-TAATTTTTAAAATTTAAAAATAT-TT
* **
18788453 TTTAATACTTTTTAATTTTTCAAAAATATTT
1 TTTAATAATTTTTAAAATTT-AAAAATATTT
18788484 TTTAA-AATTTTTAAAA
1 TTTAATAATTTTTAAAA
18788500 ATCAATTAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
30 20 0.51
31 12 0.31
32 7 0.18
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (30 bp):
TTTAATAATTTTTAAAATTTAAAAATATTT
Found at i:18788485 original size:21 final size:21
Alignment explanation
Indices: 18788456--18788501 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
18788446 ATATGTTTTT
18788456 AATACTTTTT-AATTTTTCAAA
1 AATACTTTTTAAATTTTT-AAA
*
18788477 AATATTTTTTAAAATTTTTAAA
1 AATACTTTTT-AAATTTTTAAA
18788499 AAT
1 AAT
18788502 CAATTAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 6 0.27
23 7 0.32
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (21 bp):
AATACTTTTTAAATTTTTAAA
Found at i:18790343 original size:29 final size:30
Alignment explanation
Indices: 18790300--18790361 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
18790290 TTTTTTTATA
*
18790300 AAAATAATATTAAAAATAAATTAATTAC-G
1 AAAATAATATGAAAAATAAATTAATTACAG
18790329 AAAATAATATGAAAAATAAATTAATTACAG
1 AAAATAATATGAAAAATAAATTAATTACAG
18790359 AAA
1 AAA
18790362 TGAGATGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 27 0.87
30 4 0.13
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (30 bp):
AAAATAATATGAAAAATAAATTAATTACAG
Found at i:18793257 original size:22 final size:22
Alignment explanation
Indices: 18793223--18793273 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
18793213 TTTACATCTC
* *
18793223 AAAAAA-TTATAAAATATATATA
1 AAAAAACTTATAAAAAATA-AAA
18793245 AAAAAACTT-TAAAAAATAAAA
1 AAAAAACTTATAAAAAATAAAA
18793266 AAAAAACT
1 AAAAAACT
18793274 ACAAAAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 10 0.38
22 14 0.54
23 2 0.08
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAAAACTTATAAAAAATAAAA
Found at i:18794581 original size:59 final size:60
Alignment explanation
Indices: 18794502--18794646 Score: 148
Period size: 59 Copynumber: 2.4 Consensus size: 60
18794492 GTCAAATGTT
* * * * * *
18794502 ACTAAACTATTAATAGGTTTACGTTTTGGTCAATAAATTTTAAAAAATTAC-AAATGGTC
1 ACTAAATTATTAGTAAGTTTACATTTTGGTCAATAAACTTCAAAAAATTACAAAATGGTC
* * * * *
18794561 ACTAATTTATTAGTAAGTTTATATTTTGGTCACTTAACTTCAAAAAGTTACAAAATGGTC
1 ACTAAATTATTAGTAAGTTTACATTTTGGTCAATAAACTTCAAAAAATTACAAAATGGTC
* * * *
18794621 ATTAAATTATTTGAAAGTTTTCATTT
1 ACTAAATTATTAGTAAGTTTACATTT
18794647 AAGTCACTAA
Statistics
Matches: 68, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
59 40 0.59
60 28 0.41
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (60 bp):
ACTAAATTATTAGTAAGTTTACATTTTGGTCAATAAACTTCAAAAAATTACAAAATGGTC
Found at i:18794653 original size:60 final size:59
Alignment explanation
Indices: 18794543--18794654 Score: 136
Period size: 60 Copynumber: 1.9 Consensus size: 59
18794533 AATAAATTTT
* * **
18794543 AAAAAATTACAAATGGTCACTAATTTATTAGTAAGTTTATATTTTGGTCACTTAACTTC
1 AAAAAATTACAAATGGTCACTAAATTATTAGAAAGTTTATATTTAAGTCACTTAACTTC
* * *
18794602 AAAAAGTTACAAAATGGTCATTAAATTATTTGAAAGTTT-TCATTTAAGTCACT
1 AAAAAATTAC-AAATGGTCACTAAATTATTAGAAAGTTTAT-ATTTAAGTCACT
18794655 AAGCTACTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
59 10 0.23
60 34 0.77
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (59 bp):
AAAAAATTACAAATGGTCACTAAATTATTAGAAAGTTTATATTTAAGTCACTTAACTTC
Found at i:18807114 original size:46 final size:46
Alignment explanation
Indices: 18807008--18807185 Score: 248
Period size: 46 Copynumber: 3.8 Consensus size: 46
18806998 TTTGACATGA
* * * ** *
18807008 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
* *
18807055 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* *
18807101 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
*
18807147 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
18807186 ATCAGAGAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 89 0.75
47 29 0.25
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.43
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:18807290 original size:54 final size:54
Alignment explanation
Indices: 18807224--18807468 Score: 490
Period size: 54 Copynumber: 4.5 Consensus size: 54
18807214 TCCTTACAGT
18807224 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
18807278 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
18807332 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
18807386 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
18807440 GGGATTACCAGTCCAGGCTAAATCCCCTG
1 GGGATTACCAGTCCAGGCTAAATCCCCTG
18807469 CAACGACAAT
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 191 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (54 bp):
GGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTC
Found at i:18808702 original size:18 final size:20
Alignment explanation
Indices: 18808687--18808723 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18808677 TAATAATAAA
*
18808687 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
18808707 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
18808724 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:18816394 original size:16 final size:16
Alignment explanation
Indices: 18816370--18816405 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
18816360 GAACAAAATG
18816370 AAAAAT-AAAAATAAA
1 AAAAATAAAAAATAAA
18816385 AAAAAGTAAAAAATAAA
1 AAAAA-TAAAAAATAAA
18816402 AAAA
1 AAAA
18816406 TCCATGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 1 0.05
17 13 0.68
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (16 bp):
AAAAATAAAAAATAAA
Found at i:18820224 original size:6 final size:5
Alignment explanation
Indices: 18820189--18820215 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
18820179 TACTCTCTTG
18820189 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
18820216 TCATTTTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:18821884 original size:18 final size:18
Alignment explanation
Indices: 18821863--18821897 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
18821853 ACAAAAATTC
18821863 ATATAAAATA-ATATAATA
1 ATATAAAA-ACATATAATA
18821881 ATATAAAAACATATAAT
1 ATATAAAAACATATAAT
18821898 TATAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
ATATAAAAACATATAATA
Found at i:18821903 original size:16 final size:17
Alignment explanation
Indices: 18821863--18821903 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
18821853 ACAAAAATTC
18821863 ATATAAAATAATATAAT
1 ATATAAAATAATATAAT
18821880 AATATAAAA-ACATATAAT
1 -ATATAAAATA-ATATAAT
18821898 -TATAAA
1 ATATAAA
18821904 TATTATATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.27
17 1 0.05
18 15 0.68
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATAAAATAATATAAT
Found at i:18822638 original size:6 final size:5
Alignment explanation
Indices: 18822603--18822629 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
18822593 TACTCTCTTG
18822603 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
18822630 TCATTTTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:18824324 original size:18 final size:18
Alignment explanation
Indices: 18824303--18824337 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
18824293 ACAAAAATTC
18824303 ATATAAAATA-ATATAATA
1 ATATAAAA-ACATATAATA
18824321 ATATAAAAACATATAAT
1 ATATAAAAACATATAAT
18824338 TATAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
ATATAAAAACATATAATA
Found at i:18824343 original size:16 final size:17
Alignment explanation
Indices: 18824303--18824343 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
18824293 ACAAAAATTC
18824303 ATATAAAATAATATAAT
1 ATATAAAATAATATAAT
18824320 AATATAAAA-ACATATAAT
1 -ATATAAAATA-ATATAAT
18824338 -TATAAA
1 ATATAAA
18824344 TATTATATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.27
17 1 0.05
18 15 0.68
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATAAAATAATATAAT
Found at i:18825093 original size:24 final size:24
Alignment explanation
Indices: 18825043--18825093 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
18825033 AAAAGTAAAA
* * **
18825043 AAATAATTAAATTTTATGATATTT
1 AAATAATTAAATATAATGATACAT
*
18825067 AAATAATTTAATATAATGATACAT
1 AAATAATTAAATATAATGATACAT
18825091 AAA
1 AAA
18825094 ATGTAAATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
AAATAATTAAATATAATGATACAT
Found at i:18825218 original size:31 final size:31
Alignment explanation
Indices: 18825174--18825243 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
18825164 TTTAAAAATA
18825174 AATATAATAATAAATAAGATTTAAATAATTT
1 AATATAATAATAAATAAGATTTAAATAATTT
* * *
18825205 ACTATAATGATAAATAATATTTAAATAATTT
1 AATATAATAATAAATAAGATTTAAATAATTT
18825236 AATATAAT
1 AATATAAT
18825244 TGTATATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (31 bp):
AATATAATAATAAATAAGATTTAAATAATTT
Found at i:18826009 original size:25 final size:25
Alignment explanation
Indices: 18825959--18826010 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
18825949 ATTAATATAC
*
18825959 TATATATTATAATATTGTATGTATT
1 TATATATTATAATATTGTATCTATT
* *
18825984 TATATATTA-AATTTTTTATCTAATT
1 TATATATTATAATATTGTATCT-ATT
18826009 TA
1 TA
18826011 ATTCAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (25 bp):
TATATATTATAATATTGTATCTATT
Found at i:18826286 original size:14 final size:14
Alignment explanation
Indices: 18826269--18826301 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
18826259 TATTTTTTAA
18826269 AATTAT-AAATATCT
1 AATTATGAAATA-CT
18826283 AATTATGAAATACT
1 AATTATGAAATACT
18826297 AATTA
1 AATTA
18826302 ATTTATGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (14 bp):
AATTATGAAATACT
Found at i:18827278 original size:15 final size:16
Alignment explanation
Indices: 18827230--18827280 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 16
18827220 ATTTTTACGA
*
18827230 TAAAAAAATA-ATTTT
1 TAAATAAATATATTTT
* * *
18827245 AAAATAAAAATATTAT
1 TAAATAAATATATTTT
18827261 TAAAT-AATATATTTT
1 TAAATAAATATATTTT
18827276 TAAAT
1 TAAAT
18827281 TTTCAAAAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 20 0.71
16 8 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAATAAATATATTTT
Found at i:18827542 original size:21 final size:20
Alignment explanation
Indices: 18827485--18827574 Score: 67
Period size: 20 Copynumber: 4.3 Consensus size: 20
18827475 TATTGAAATT
*
18827485 TATTTTAAATATATAATATTA
1 TATTTT-AATATTTAATATTA
* *
18827506 TATATTTAATTTTTTATTAGTTA
1 TAT-TTTAA-TATTTAATA-TTA
*
18827529 TATTTTAATATTTAA-AATA
1 TATTTTAATATTTAATATTA
*
18827548 TATTTTATATATTCAA-ATTA
1 TATTTTA-ATATTTAATATTA
*
18827568 AATTTTA
1 TATTTTA
18827575 TAAATCATTA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
19 9 0.16
20 17 0.30
21 10 0.18
22 14 0.25
23 6 0.11
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (20 bp):
TATTTTAATATTTAATATTA
Found at i:18827548 original size:45 final size:44
Alignment explanation
Indices: 18827459--18827548 Score: 101
Period size: 45 Copynumber: 2.0 Consensus size: 44
18827449 TTATATTTAG
*
18827459 TATATAATTAATTTCTTATTGAAATTTATTTTAAATATATAATAT
1 TATATAATTAATTTCTTATT-AAATTTATTTTAAATATAAAATAT
* * * *
18827504 TATATATTTAATTTTTTATT-AGTTATATTTTAATATTTAAAATAT
1 TATATAATTAATTTCTTATTAAATT-TATTTTAA-ATATAAAATAT
18827549 ATTTTATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
43 3 0.08
44 8 0.21
45 27 0.71
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (44 bp):
TATATAATTAATTTCTTATTAAATTTATTTTAAATATAAAATAT
Found at i:18830704 original size:24 final size:24
Alignment explanation
Indices: 18830659--18830705 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
18830649 ACTCAAATTT
*
18830659 AAATTTAAAAAATTATTTTTATAC
1 AAATTTAAAAAATTATTATTATAC
*
18830683 AAATTATAAAAATTTA-TATTATA
1 AAATT-TAAAAAATTATTATTATA
18830706 AGCTTGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATTTAAAAAATTATTATTATAC
Found at i:18835373 original size:2 final size:2
Alignment explanation
Indices: 18835366--18835393 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
18835356 TACCTCCTTC
18835366 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
18835394 GAATTTTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:18837770 original size:17 final size:17
Alignment explanation
Indices: 18837750--18837782 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18837740 AGAAACTCAT
*
18837750 AAAATAAAATAAAAAAC
1 AAAATAAAACAAAAAAC
18837767 AAAATAAAACAAAAAA
1 AAAATAAAACAAAAAA
18837783 TGACCAGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAATAAAACAAAAAAC
Found at i:18840782 original size:58 final size:58
Alignment explanation
Indices: 18840714--18840833 Score: 222
Period size: 58 Copynumber: 2.1 Consensus size: 58
18840704 ACTTGCTGGC
18840714 AGAAAGGAATAATAAAAACAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
1 AGAAAGGAATAATAAAAACAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
* *
18840772 AGAAATGAATAATAAAAATAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
1 AGAAAGGAATAATAAAAACAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
18840830 AGAA
1 AGAA
18840834 CTTCGGTAGG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.61, C:0.04, G:0.22, T:0.13
Consensus pattern (58 bp):
AGAAAGGAATAATAAAAACAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
Found at i:18843999 original size:16 final size:17
Alignment explanation
Indices: 18843968--18844000 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18843958 TTCATAAGTA
18843968 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
18843985 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
18844001 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:18848234 original size:6 final size:6
Alignment explanation
Indices: 18848223--18848272 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
18848213 TCTAAAATTT
* *
18848223 GTCATC GTCATC GTCATC TTCATC GTCA-- -TCATC GTCATC ATCATC
1 GTCATC GTCATC GTCATC GTCATC GTCATC GTCATC GTCATC GTCATC
*
18848268 ATCAT
1 GTCAT
18848273 TAGTAACTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
3 3 0.08
6 35 0.92
ACGTcount: A:0.22, C:0.32, G:0.10, T:0.36
Consensus pattern (6 bp):
GTCATC
Found at i:18848256 original size:9 final size:9
Alignment explanation
Indices: 18848224--18848272 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
18848214 CTAAAATTTG
18848224 TCATCGTCA
1 TCATCGTCA
* * *
18848233 TCGTCATCT
1 TCATCGTCA
18848242 TCATCGTCA
1 TCATCGTCA
18848251 TCATCGTCA
1 TCATCGTCA
*
18848260 TCATCATCA
1 TCATCGTCA
18848269 TCAT
1 TCAT
18848273 TAGTAACTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.22, C:0.33, G:0.08, T:0.37
Consensus pattern (9 bp):
TCATCGTCA
Found at i:18848580 original size:15 final size:15
Alignment explanation
Indices: 18848485--18848586 Score: 53
Period size: 15 Copynumber: 6.6 Consensus size: 15
18848475 ATGCTGCAGC
18848485 ACCAAATGCTGCTGTTAT
1 ACCAAATGCTGC-G--AT
* * *
18848503 ACCAAACGTTGCGGT
1 ACCAAATGCTGCGAT
**
18848518 ACCAAATGCTATTG-T
1 ACCAAATGCT-GCGAT
** *
18848533 ACCAAACACTGTGAT
1 ACCAAATGCTGCGAT
* *
18848548 GCCAAATGCTGCTAT
1 ACCAAATGCTGCGAT
* *
18848563 ACCGAATGCTGCGGT
1 ACCAAATGCTGCGAT
18848578 ACCAAATGC
1 ACCAAATGC
18848587 GAATGAGAAA
Statistics
Matches: 62, Mismatches: 20, Indels: 7
0.70 0.22 0.08
Matches are distributed among these distances:
14 2 0.03
15 48 0.77
16 1 0.02
17 1 0.02
18 10 0.16
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (15 bp):
ACCAAATGCTGCGAT
Found at i:18848791 original size:24 final size:24
Alignment explanation
Indices: 18848764--18848811 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
18848754 AATCAGTATG
18848764 ATAAATCGTAATTTATACATATTT
1 ATAAATCGTAATTTATACATATTT
18848788 ATAAATCGTAATTTATACATATTT
1 ATAAATCGTAATTTATACATATTT
18848812 TACCCCATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (24 bp):
ATAAATCGTAATTTATACATATTT
Found at i:18849125 original size:13 final size:13
Alignment explanation
Indices: 18849107--18849131 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18849097 CAGTAATCGC
18849107 ACACGGGCGTGTT
1 ACACGGGCGTGTT
18849120 ACACGGGCGTGT
1 ACACGGGCGTGT
18849132 CCCTGCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:18859290 original size:21 final size:20
Alignment explanation
Indices: 18859249--18859290 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
18859239 CAAAACTTGT
*
18859249 ATAACTATCAATAAATA-TTC
1 ATAACTATCAAGAAA-ACTTC
18859269 ATAATCTATCAAGAAAACTTC
1 ATAA-CTATCAAGAAAACTTC
18859290 A
1 A
18859291 AAATACATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.31
Consensus pattern (20 bp):
ATAACTATCAAGAAAACTTC
Found at i:18861705 original size:15 final size:15
Alignment explanation
Indices: 18861682--18861888 Score: 220
Period size: 15 Copynumber: 13.8 Consensus size: 15
18861672 CCTCTACCAT
*
18861682 TGTACCAAATGTTGC
1 TGTACCAAATGCTGC
* *
18861697 AGCACCAAATGCTGC
1 TGTACCAAATGCTGC
* *
18861712 AGTACCAAATGCAGC
1 TGTACCAAATGCTGC
*
18861727 TGTACCAAATGCTAC
1 TGTACCAAATGCTGC
*
18861742 -GATACCAAATACTGC
1 TG-TACCAAATGCTGC
* * *
18861757 TGTTCCAAATGTTGT
1 TGTACCAAATGCTGC
*
18861772 TGTACCAAATGTTGC
1 TGTACCAAATGCTGC
*
18861787 GGTACCAAATGCTGC
1 TGTACCAAATGCTGC
* *
18861802 TGTACCAGATGTTGC
1 TGTACCAAATGCTGC
* *
18861817 GGTACCAAATGTTGC
1 TGTACCAAATGCTGC
*
18861832 TGTACCAAATGTTGC
1 TGTACCAAATGCTGC
18861847 -GATACCAAATGCTGC
1 TG-TACCAAATGCTGC
18861862 TGTACCAAATGCTGC
1 TGTACCAAATGCTGC
*
18861877 GGTACCAAATGC
1 TGTACCAAATGC
18861889 GAACGAGAAA
Statistics
Matches: 162, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
14 2 0.01
15 158 0.98
16 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (15 bp):
TGTACCAAATGCTGC
Found at i:18861719 original size:30 final size:30
Alignment explanation
Indices: 18861682--18861888 Score: 245
Period size: 30 Copynumber: 6.9 Consensus size: 30
18861672 CCTCTACCAT
* *
18861682 TGTACCAAATGTTGCAGCACCAAATGCTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
* ** * *
18861712 AGTACCAAATGCAGCTGTACCAAATGCTAC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
** * * * *
18861742 -GATACCAAATACTGCTGTTCCAAATGTTGT
1 TG-TACCAAATGTTGCGGTACCAAATGCTGC
18861772 TGTACCAAATGTTGCGGTACCAAATGCTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
* *
18861802 TGTACCAGATGTTGCGGTACCAAATGTTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
*
18861832 TGTACCAAATGTTGCGATACCAAATGCTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
*
18861862 TGTACCAAATGCTGCGGTACCAAATGC
1 TGTACCAAATGTTGCGGTACCAAATGC
18861889 GAACGAGAAA
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
29 1 0.01
30 148 0.99
31 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (30 bp):
TGTACCAAATGTTGCGGTACCAAATGCTGC
Found at i:18869258 original size:42 final size:43
Alignment explanation
Indices: 18869148--18869262 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
18869138 AGAACATATA
* * *
18869148 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACAT
1 CAATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAACAT
* * * * * *
18869191 CAATGCCACTGCCCCACATAGGGTCTTACATG-AAGTCAAATAT
1 CAATGCCAATGTCCCAAACATGGTCTTACATGTAA-TCAAACAT
*
18869234 -GATGCCAATGTCCCAAACATGGTCTTACA
1 CAATGCCAATGTCCCAAACATGGTCTTACA
18869263 CGCAAAACAG
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
CAATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAACAT
Found at i:18870911 original size:124 final size:124
Alignment explanation
Indices: 18870685--18870933 Score: 462
Period size: 124 Copynumber: 2.0 Consensus size: 124
18870675 TAAGATATGG
18870685 ATTGGAGTTTCATCGTAAGTCATATCAGACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
1 ATTGGAGTTTCATCGTAAGTCATATCAGACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
*
18870750 CGGATCAGATCTGTATCGTCAAAGCACCGATATATGAAACACATCATGAATCTTTTCTA
66 CGGATCAGATCTGTATCGTCAAAGCACCGATACATGAAACACATCATGAATCTTTTCTA
*
18870809 ATTGGCGTTTCATCGTAAGTCATATCAGACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
1 ATTGGAGTTTCATCGTAAGTCATATCAGACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
* *
18870874 CGGATCAGATCTGTATCGTCAAAGCACTGATACATGAAACACATCATGAATTTTTTCTA
66 CGGATCAGATCTGTATCGTCAAAGCACCGATACATGAAACACATCATGAATCTTTTCTA
18870933 A
1 A
18870934 CTCTGGTGGC
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 121 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (124 bp):
ATTGGAGTTTCATCGTAAGTCATATCAGACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
CGGATCAGATCTGTATCGTCAAAGCACCGATACATGAAACACATCATGAATCTTTTCTA
Found at i:18877142 original size:43 final size:42
Alignment explanation
Indices: 18877087--18877188 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
18877077 CCAACGTCAT
* * * *
18877087 AGACTTGGTCTTACA-TATAATCAAACATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGA-AATAAAACAT-GATGCCAATGTCCC
* *
18877130 AGACA-GGCTCTTACACGAAGTAAAATATGATGCCAATGTCCC
1 AGACATGG-TCTTACACGAAATAAAACATGATGCCAATGTCCC
18877172 AGACATGGTCTTACACG
1 AGACATGGTCTTACACG
18877189 CAAAACAGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
42 29 0.58
43 20 0.40
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATAAAACATGATGCCAATGTCCC
Found at i:18880808 original size:22 final size:22
Alignment explanation
Indices: 18880772--18880922 Score: 87
Period size: 22 Copynumber: 7.0 Consensus size: 22
18880762 TAGTGTACAT
* *
18880772 AGAGAGCATAAAAGTGCTAATC
1 AGAGAGCACAGAAGTGCTAATC
*
18880794 AGAGAGCACCGAAGTGCTGAA-C
1 AGAGAGCACAGAAGTGCT-AATC
* * * **
18880816 AGATAGCACAAAAATATTAATC
1 AGAGAGCACAGAAGTGCTAATC
* * *
18880838 AAAGAGCACCG-A-TGTTGAAT-
1 AGAGAGCACAGAAGTGCT-AATC
** *
18880858 AGAGAGCACAGATTTACTAATC
1 AGAGAGCACAGAAGTGCTAATC
* *
18880880 AAAGAGCACCA-AAGTGCTAAAC
1 AGAGAGCA-CAGAAGTGCTAATC
*
18880902 CGAGAGCACAGAAGTGCTAAT
1 AGAGAGCACAGAAGTGCTAAT
18880923 TAAAGAGCGC
Statistics
Matches: 94, Mismatches: 27, Indels: 16
0.69 0.20 0.12
Matches are distributed among these distances:
20 12 0.13
21 11 0.12
22 67 0.71
23 4 0.04
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.17
Consensus pattern (22 bp):
AGAGAGCACAGAAGTGCTAATC
Found at i:18880879 original size:42 final size:44
Alignment explanation
Indices: 18880772--18880947 Score: 149
Period size: 44 Copynumber: 4.0 Consensus size: 44
18880762 TAGTGTACAT
* * * *
18880772 AGAGAGCATAAAAGTGCTAATCAGAGAGCACCGAAGTGCTGAAC
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
* * * *
18880816 AGATAGCACAAAAATATTAATCAAAGAGCACCG-A-TGTTGAAT
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
* ** * *
18880858 AGAGAGCACAGATTTACTAATCAAAGAGCACCAAAGTGCTAAAC
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
* * * * * * * *
18880902 CGAGAGCACAGAAGTGCTAATTAAAGAGCGCCAAAGTGTTGAAC
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
18880946 AG
1 AG
18880948 TTAATAGAGC
Statistics
Matches: 104, Mismatches: 26, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 33 0.32
43 2 0.02
44 69 0.66
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (44 bp):
AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
Found at i:18880938 original size:22 final size:21
Alignment explanation
Indices: 18880874--18880939 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 21
18880864 CACAGATTTA
*
18880874 CTAATCAAAGAGCACCAAAGTG
1 CTAAT-AAAGAGCGCCAAAGTG
** *
18880896 CTAA-ACCGAGAGCACAGAAGTG
1 CTAATAAAGAGCGC-CA-AAGTG
18880918 CTAATTAAAGAGCGCCAAAGTG
1 CTAA-TAAAGAGCGCCAAAGTG
18880940 TTGAACAGTT
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
20 5 0.15
21 2 0.06
22 18 0.55
23 2 0.06
24 6 0.18
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.14
Consensus pattern (21 bp):
CTAATAAAGAGCGCCAAAGTG
Found at i:18893805 original size:34 final size:35
Alignment explanation
Indices: 18893767--18893833 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
18893757 AAAAATTATT
18893767 TAAATTAGAGTTTAT-GGCTTTTAAATAAATTAAG
1 TAAATTAGAGTTTATAGGCTTTTAAATAAATTAAG
* * *
18893801 TAAATTAGGGTTTTTAGGGTTTTAAATAAATTA
1 TAAATTAGAGTTTATAGGCTTTTAAATAAATTA
18893834 GGGTTTAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 13 0.45
35 16 0.55
ACGTcount: A:0.39, C:0.01, G:0.16, T:0.43
Consensus pattern (35 bp):
TAAATTAGAGTTTATAGGCTTTTAAATAAATTAAG
Found at i:18893825 original size:26 final size:25
Alignment explanation
Indices: 18893796--18893883 Score: 124
Period size: 26 Copynumber: 3.5 Consensus size: 25
18893786 TTTAAATAAA
*
18893796 TTAAGTAAATTAGGGTTTTTAGGGTT
1 TTAAATAAATTAGGG-TTTTAGGGTT
18893822 TTAAATAAATTAGGG-TTTAGGGTT
1 TTAAATAAATTAGGGTTTTAGGGTT
* *
18893846 TTAAAATAAATTAGGATTTTATGGTT
1 TT-AAATAAATTAGGGTTTTAGGGTT
18893872 TTAAATAAATTA
1 TTAAATAAATTA
18893884 AATTAGGGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
24 11 0.19
25 22 0.39
26 24 0.42
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.44
Consensus pattern (25 bp):
TTAAATAAATTAGGGTTTTAGGGTT
Found at i:18893858 original size:25 final size:25
Alignment explanation
Indices: 18893801--18893900 Score: 112
Period size: 26 Copynumber: 3.8 Consensus size: 25
18893791 ATAAATTAAG
18893801 TAAATTAGGGTTTTTAGGGTTTT-AAA
1 TAAATTAGGG--TTTAGGGTTTTAAAA
18893827 TAAATTAGGGTTTAGGGTTTTAAAA
1 TAAATTAGGGTTTAGGGTTTTAAAA
* *
18893852 TAAATTAGGATTTTATGGTTTTAAATAAA
1 TAAATTAGG-GTTTAGGGTTTT--A-AAA
18893881 TTAAATTAGGGTTTAGGGTT
1 -TAAATTAGGGTTTAGGGTT
18893901 AAATGCAATT
Statistics
Matches: 64, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
24 11 0.17
25 12 0.19
26 20 0.31
28 1 0.02
29 11 0.17
30 9 0.14
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (25 bp):
TAAATTAGGGTTTAGGGTTTTAAAA
Found at i:18894319 original size:126 final size:125
Alignment explanation
Indices: 18893982--18894360 Score: 566
Period size: 125 Copynumber: 3.0 Consensus size: 125
18893972 ATTTTTATCT
* * *
18893982 TGAAAAAATAATTTTGAGAAGACGTTTTTGAATAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGC
* * *
18894047 ACTGTCAGCAAAAATACAGAAAAAAGCTCTCACATGGACGCTCTTTTTCTACAGTAGTTCC
66 ACTGTCAGCAAAATTAC-GAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCA
18894108 TG-AAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGC
* * * *
18894172 ACTATGAGCAAAATTACGAAAAAAAGCTAC-CATGTGGACACTCTTTTTCTACAGTAGTTCA
66 ACTGTCAGCAAAATTACG-AAAAAAGCT-CTCACGTGGACGCTCTTTTTCTACAGTAGTTCA
* *
18894233 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGT-AAAAATGCTTCAAGCAAGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGC
* * *
18894297 ACTGTTAGCAAAATTTCTGAAAAAAGCTCTTACGTGGACGCTCTTTTTCTACAGTAGTTCA
66 ACTGTCAGCAAAATTAC-GAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCA
18894358 TGA
1 TGA
18894361 TTGGCTCATT
Statistics
Matches: 230, Mismatches: 18, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
124 2 0.01
125 185 0.80
126 43 0.19
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (125 bp):
TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGC
ACTGTCAGCAAAATTACGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCA
Found at i:18899343 original size:26 final size:26
Alignment explanation
Indices: 18899314--18899390 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
18899304 TTTTTTTGTA
18899314 ATTTTTATTTTTAATGGTTTTAATAC
1 ATTTTTATTTTTAATGGTTTTAATAC
* *
18899340 A-TTTTA-GTTT--T--TCTTAA-AC
1 ATTTTTATTTTTAATGGTTTTAATAC
18899359 AATTTTTATTTTTAATGGTTTTAATAC
1 -ATTTTTATTTTTAATGGTTTTAATAC
18899386 ATTTT
1 ATTTT
18899391 GAATTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 6 0.15
21 5 0.13
22 4 0.10
24 4 0.10
25 5 0.13
26 11 0.28
27 2 0.05
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.61
Consensus pattern (26 bp):
ATTTTTATTTTTAATGGTTTTAATAC
Found at i:18901035 original size:17 final size:17
Alignment explanation
Indices: 18901015--18901047 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18901005 ATTAAGAATG
18901015 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
18901032 TTATTAAATTATATTT
1 TTATTAAATTATATTT
18901048 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:18901095 original size:58 final size:55
Alignment explanation
Indices: 18900992--18901122 Score: 149
Period size: 58 Copynumber: 2.3 Consensus size: 55
18900982 TTAATTCATA
* *
18900992 TAATAATAATTATATTAAGAATGTTATTAAATTATATTTTTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATATGATTAAATTATATTTTTTATTAAATTATATT
* * * *
18901047 TAATAATAATTATGTTAA-AATATGGTTAAACTATTTATTATTTGTATTAAATTATTTT
1 TAATAATAATTATATTAAGAATATGATTAAA-T-TATATT-TTT-TATTAAATTATATT
18901105 TAATAATAATCT-TATTAA
1 TAATAATAAT-TATATTAA
18901123 AATTTAATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
54 9 0.14
55 18 0.28
56 5 0.08
57 3 0.05
58 28 0.44
59 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (55 bp):
TAATAATAATTATATTAAGAATATGATTAAATTATATTTTTTATTAAATTATATT
Found at i:18901274 original size:16 final size:16
Alignment explanation
Indices: 18901250--18901305 Score: 87
Period size: 16 Copynumber: 3.5 Consensus size: 16
18901240 TGAATTACTT
*
18901250 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
18901266 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
18901282 ATTACAG-TCCTATTCC
1 ATTACAGCT-CTATTCC
18901298 ATTACAGC
1 ATTACAGC
18901306 CAACCAAACG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
15 1 0.03
16 36 0.97
ACGTcount: A:0.27, C:0.29, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:18906400 original size:55 final size:52
Alignment explanation
Indices: 18906340--18906450 Score: 177
Period size: 52 Copynumber: 2.1 Consensus size: 52
18906330 TATAAAATAC
18906340 AAATTAATTAAAATTACATAAATGAAAAAATATATTAAATAATATTCAAAAATTA
1 AAATTAATTAAAATTACATAAATG-AAAAA-A-ATTAAATAATATTCAAAAATTA
**
18906395 AAATTAATTAAAATTACATAAATGAAAAAAATTAAATAATATTCAAATTTTA
1 AAATTAATTAAAATTACATAAATGAAAAAAATTAAATAATATTCAAAAATTA
18906447 AAAT
1 AAAT
18906451 AAACCGTTAC
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
52 24 0.44
53 1 0.02
54 5 0.09
55 24 0.44
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (52 bp):
AAATTAATTAAAATTACATAAATGAAAAAAATTAAATAATATTCAAAAATTA
Found at i:18908345 original size:16 final size:16
Alignment explanation
Indices: 18908324--18908361 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
18908314 TTTGGTTAGT
*
18908324 TGTAATGGAATAGGGC
1 TGTAATGGAATAGAGC
18908340 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
18908356 TGTAAT
1 TGTAAT
18908362 AAGTAATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.32, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:18908672 original size:58 final size:57
Alignment explanation
Indices: 18908529--18908672 Score: 152
Period size: 58 Copynumber: 2.5 Consensus size: 57
18908519 TTGTTATTAA
* * *
18908529 ATTTTAATA-AGATTATTATTGAA-AATAATTTAATAAAAATAATAAATAGTTTAACCAT
1 ATTTTAATATA-ATTATTATTGAATAA-AATTTAATAAAAATAAT-AATAATTTAACAAC
* * *
18908587 ATTTTAACATAATTATTATTAAATAAAATTTAATAAAAA-AAT-ATAATTTAATAAC
1 ATTTTAATATAATTATTATTGAATAAAATTTAATAAAAATAATAATAATTTAACAAC
18908642 ATTCTTAATATAATTATTATATGAATTAAAA
1 ATT-TTAATATAATTATTAT-TGAA-TAAAA
18908673 AATCAAAATA
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
55 12 0.16
56 15 0.21
57 6 0.08
58 37 0.51
59 3 0.04
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTGAATAAAATTTAATAAAAATAATAATAATTTAACAAC
Found at i:18914852 original size:15 final size:16
Alignment explanation
Indices: 18914827--18914856 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18914817 TTCAAGATAA
18914827 GATGATGAAGGAAGAT
1 GATGATGAAGGAAGAT
18914843 GATG-TGAAGGAAGA
1 GATGATGAAGGAAGA
18914857 AGAAGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (16 bp):
GATGATGAAGGAAGAT
Found at i:18924484 original size:41 final size:41
Alignment explanation
Indices: 18924439--18924522 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
18924429 GTGCAAAAGA
*
18924439 TTGGACATTTACTATATTTTACGTTATTGTTTCGTAGTGGT
1 TTGGACATTTACTATATTTTACGTTATTGTTTCATAGTGGT
* ** *
18924480 TTGGATATTTACTATATTTTATTTTATTGTTTCATGGTGGT
1 TTGGACATTTACTATATTTTACGTTATTGTTTCATAGTGGT
18924521 TT
1 TT
18924523 TCCTTTTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.19, C:0.07, G:0.18, T:0.56
Consensus pattern (41 bp):
TTGGACATTTACTATATTTTACGTTATTGTTTCATAGTGGT
Found at i:18925305 original size:21 final size:20
Alignment explanation
Indices: 18925241--18925297 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
18925231 TTTTTTTTGC
*
18925241 TACTATTTTGCTGTTGT-TT
1 TACTATTTTGCTATTGTATT
18925260 TGATTCTATTTTGCTATTGTATT
1 T-A--CTATTTTGCTATTGTATT
*
18925283 TACTATTTTGTTATT
1 TACTATTTTGCTATT
18925298 ATTATTTAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 1 0.03
20 13 0.41
22 15 0.47
23 3 0.09
ACGTcount: A:0.16, C:0.09, G:0.12, T:0.63
Consensus pattern (20 bp):
TACTATTTTGCTATTGTATT
Found at i:18926491 original size:42 final size:42
Alignment explanation
Indices: 18926435--18926517 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
18926425 ATGGGCTACG
**
18926435 GATCAAAATTCGTGACAAATACACAAAGAGCGTCCCATGGAA
1 GATCAAAACCCGTGACAAATACACAAAGAGCGTCCCATGGAA
* *
18926477 GATCAAAACCCGTGACGAATACGCAAAGAGCGTCCCATGGA
1 GATCAAAACCCGTGACAAATACACAAAGAGCGTCCCATGGA
18926518 GGTCAATTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.40, C:0.24, G:0.22, T:0.14
Consensus pattern (42 bp):
GATCAAAACCCGTGACAAATACACAAAGAGCGTCCCATGGAA
Found at i:18939356 original size:131 final size:131
Alignment explanation
Indices: 18939117--18939362 Score: 341
Period size: 131 Copynumber: 1.9 Consensus size: 131
18939107 AGAAATTCCT
* * * *
18939117 TAAAACGAAGGCAATGTTTGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGTTGGGTTGCA
1 TAAAACGAAGGAAATGTTTGATGCTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTACA
* * * * *
18939182 ATTTCCTGTTTGTTCGAAACAATCGAATATTCCTTTGGTATTTCACTCATGCCTTTAAAAGTTCT
66 ATTTCCTGTTTGTTCAAAACAATCAAACATCCCTTTGGAATTTCACTCATGCCTTTAAAAGTTCT
18939247 C
131 C
*
18939248 TAAAACGAAGGAAATGTTTGATGCTTGGCAATTCGGGGAGTCGTGCCCTATCGTGCTGGGTTACA
1 TAAAACGAAGGAAATGTTTGATGCTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTACA
* ** * *
18939313 ATTT-TTCGTTTGTTCAAAATGATCAAACGTCCCTTTTGAATTTCACTCAT
66 ATTTCCT-GTTTGTTCAAAACAATCAAACATCCCTTTGGAATTTCACTCAT
18939363 ATTTTCTAAA
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
130 1 0.01
131 98 0.99
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (131 bp):
TAAAACGAAGGAAATGTTTGATGCTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTACA
ATTTCCTGTTTGTTCAAAACAATCAAACATCCCTTTGGAATTTCACTCATGCCTTTAAAAGTTCT
C
Found at i:18951126 original size:45 final size:45
Alignment explanation
Indices: 18951062--18951269 Score: 181
Period size: 45 Copynumber: 4.6 Consensus size: 45
18951052 AAGTCACAAG
*
18951062 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* ** * * *
18951107 TCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTATAAACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---AGAAAGCA-A-A
* * * * *
18951158 TCTCATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA-AAA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* *
18951199 TCTTATCTCCTTGAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
* * *
18951244 TATTATTTCCCTGAAATTGCAGTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGA
18951270 ATAGATTGAA
Statistics
Matches: 126, Mismatches: 27, Indels: 20
0.73 0.16 0.12
Matches are distributed among these distances:
41 26 0.21
42 2 0.02
43 3 0.02
44 6 0.05
45 53 0.42
46 2 0.02
49 6 0.05
50 2 0.02
51 26 0.21
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAA
Found at i:18951223 original size:137 final size:137
Alignment explanation
Indices: 18951057--18951361 Score: 513
Period size: 137 Copynumber: 2.2 Consensus size: 137
18951047 GATTGAAGTC
*
18951057 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
* * *
18951122 GTTGCAGTGGAATAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAGCA
66 ATTGCAGTGGAATAGATTGAAGCTATAAACCACAGATCTCATATCTCTGAAGTCGCAGTAGAGCA
18951187 GATCAAA
131 GATCAAA
*
18951194 ACAAGTCTTATCTCCTTGAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
1 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
* *
18951259 ATTGCAGTGGAATAGATTGAAGCTATAAATCACAGATCTCATATCTTTGAAGTCGCAGTAGAGCA
66 ATTGCAGTGGAATAGATTGAAGCTATAAACCACAGATCTCATATCTCTGAAGTCGCAGTAGAGCA
18951324 GATCAAA
131 GATCAAA
* *
18951331 ACAA-ACTCTATTTCCTTGAAGTTGCAGTGGA
1 ACAAGTCT-TATCTCCTTGAAGTTGCAGTGGA
18951362 ACGATAGAGC
Statistics
Matches: 157, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
136 2 0.01
137 155 0.99
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (137 bp):
ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
ATTGCAGTGGAATAGATTGAAGCTATAAACCACAGATCTCATATCTCTGAAGTCGCAGTAGAGCA
GATCAAA
Found at i:18951435 original size:16 final size:18
Alignment explanation
Indices: 18951404--18951436 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
18951394 TGGGTTGAAC
18951404 GAGGCTACCTAAAGAAGA
1 GAGGCTACCTAAAGAAGA
18951422 GAGGC-ACC-AAAGAAG
1 GAGGCTACCTAAAGAAG
18951437 TCAAGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.45, C:0.18, G:0.30, T:0.06
Consensus pattern (18 bp):
GAGGCTACCTAAAGAAGA
Found at i:18951973 original size:13 final size:14
Alignment explanation
Indices: 18951955--18951992 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
18951945 ATGTCTATTT
18951955 TTTTTCTTTT-TCA
1 TTTTTCTTTTCTCA
**
18951968 TTTTTCTTTTCTTT
1 TTTTTCTTTTCTCA
18951982 TTTTTCTTTTC
1 TTTTTCTTTTC
18951993 CGAATTTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTCTTTTCTCA
Found at i:18954991 original size:43 final size:44
Alignment explanation
Indices: 18954919--18955054 Score: 186
Period size: 43 Copynumber: 3.1 Consensus size: 44
18954909 CTATCGAAAT
* *
18954919 ATGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
1 ATGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
* * *
18954963 ATGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAA
1 ATGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
*
18955006 AT-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
1 ATGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
18955051 ATGA
1 ATGA
18955055 AATGTTATGT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 9 0.11
45 32 0.41
46 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (44 bp):
ATGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
Found at i:18955367 original size:38 final size:38
Alignment explanation
Indices: 18955324--18955521 Score: 258
Period size: 38 Copynumber: 5.2 Consensus size: 38
18955314 ATGATATTTG
* ** *
18955324 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGAATTA
18955362 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
18955400 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* *
18955438 TATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
18955476 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
*
18955514 TATTCGGG
1 TATCCGGG
18955522 CCTTTGAGCC
Statistics
Matches: 147, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
37 2 0.01
38 143 0.97
39 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:18955564 original size:45 final size:45
Alignment explanation
Indices: 18955514--18955686 Score: 210
Period size: 45 Copynumber: 3.9 Consensus size: 45
18955504 GCTGGTATTA
*
18955514 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
18955559 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
18955604 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA-CAC
* * * *
18955649 TAATCGGGCC-TCGATCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
18955687 TTTGAGAAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
43 10 0.09
44 17 0.15
45 84 0.74
46 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:18959792 original size:3 final size:3
Alignment explanation
Indices: 18959784--18959863 Score: 74
Period size: 3 Copynumber: 26.7 Consensus size: 3
18959774 AAATGGTGAA
** * *
18959784 AAT AAT AAT AAT AAT AAT ACA- AAT ACC AAC AACG AA- AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT AAT AAT
* *
18959829 AGT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
18959864 CGACATGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
2 3 0.05
3 59 0.91
4 3 0.05
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:18960991 original size:9 final size:9
Alignment explanation
Indices: 18960977--18961002 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
18960967 TTACAATCTT
18960977 TTTTTTTTG
1 TTTTTTTTG
18960986 TTTTTTTTG
1 TTTTTTTTG
18960995 TTTTTTTT
1 TTTTTTTT
18961003 ATTCTTCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:18961765 original size:88 final size:88
Alignment explanation
Indices: 18961504--18961950 Score: 445
Period size: 88 Copynumber: 5.0 Consensus size: 88
18961494 TGCTTCGATA
* * *
18961504 TGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTCAAAG
1 TGCTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAGG
* * *** *
18961569 AGGTAAGAATT-ATTAATTTCAACC
66 AGATAAG-ATTGGTGGCTTT-AATC
* * * * ** * * ** *
18961593 TGCTCCACTGCAACTTCAGAGAGATACG-G-TTTGTATATTTTTATCATGCTCTACTGCAAC-TT
1 TGCTCCAATGTAATTTCAGGGAGA-A-GAGATTTGTA-GCTTTGATC-TACTCCGCTGGAACTTT
* *
18961655 CAGAGAGATAAAGATT-GTGGCTTTGATC
62 AAG-GAGAT-AAGATTGGTGGCTTTAATC
18961683 TGCTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAGG
1 TGCTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAGG
*
18961748 AGATAAGGTTGGTGGCTTTAATC
66 AGATAAGATTGGTGGCTTTAATC
* * ** *
18961771 CGCTCCAATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAGG
1 TGCTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAGG
*
18961836 AGATAAGATTGGTGGTTTTAATC
66 AGATAAGATTGGTGGCTTTAATC
* * * * * *
18961859 TGCTCCAATGTAATTTTAGGGAGAAAAGATTTGTAGCTTCGATCTTCTCCACTGAAACTTTAAGG
1 TGCTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAGG
* * *
18961924 AGATAAGGTTGATGGCTTAAATC
66 AGATAAGATTGGTGGCTTTAATC
18961947 TGCT
1 TGCT
18961951 TCCCTACTAC
Statistics
Matches: 294, Mismatches: 54, Indels: 21
0.80 0.15 0.06
Matches are distributed among these distances:
87 5 0.02
88 189 0.64
89 37 0.13
90 38 0.13
91 22 0.07
92 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (88 bp):
TGCTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAGG
AGATAAGATTGGTGGCTTTAATC
Found at i:18961909 original size:44 final size:44
Alignment explanation
Indices: 18961659--18961897 Score: 201
Period size: 44 Copynumber: 5.4 Consensus size: 44
18961649 CAACTTCAGA
* * *
18961659 GAGATAAAGA-TTGTGGCTTTGATCTGCTCCAATGTAATTTCAGG
1 GAGA-AAAGATTTGTAGCTTTAATCTGCTCCAATGTAATTTTAGG
* * * ** * * *
18961703 GAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAATTTTAGG
* * * * *
18961747 GAGATAAGGTTGGTGGCTTTAATCCGCTCCAATGTAATTTTAGG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAATTTTAGG
* * * ** * * * *
18961791 GAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAATTTTAGG
* * * *
18961835 GAGATAAGATTGGTGGTTTTAATCTGCTCCAATGTAATTTTAGG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAATTTTAGG
18961879 GAGAAAAGATTTGTAGCTT
1 GAGAAAAGATTTGTAGCTT
18961898 CGATCTTCTC
Statistics
Matches: 141, Mismatches: 53, Indels: 2
0.72 0.27 0.01
Matches are distributed among these distances:
43 4 0.03
44 137 0.97
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (44 bp):
GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAATTTTAGG
Found at i:18961926 original size:44 final size:44
Alignment explanation
Indices: 18961659--18961926 Score: 198
Period size: 44 Copynumber: 6.1 Consensus size: 44
18961649 CAACTTCAGA
* * *
18961659 GAGATAAAGA-TTGTGGCTTTGATCTGCTCCAATGTAA-TTTCAGG
1 GAGA-AAAGATTTGTAGCTTTAATCTGCTCCAATGTAACTTT-AAG
* * * ** *
18961703 GAGAAGAGATTTGTAGCTTTGATCTACTCCGCTGGAACTTTAAG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAACTTTAAG
* * * * * * *
18961747 GAGATAAGGTTGGTGGCTTTAATCCGCTCCAATGTAATTTTAGG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAACTTTAAG
* * * ** * *
18961791 GAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAACTTTAAG
* * * * * *
18961835 GAGATAAGATTGGTGGTTTTAATCTGCTCCAATGTAATTTTAGG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAACTTTAAG
** * * *
18961879 GAGAAAAGATTTGTAGCTTCGATCTTCTCCACTGAAACTTTAAG
1 GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAACTTTAAG
18961923 GAGA
1 GAGA
18961927 TAAGGTTGAT
Statistics
Matches: 164, Mismatches: 58, Indels: 4
0.73 0.26 0.02
Matches are distributed among these distances:
43 4 0.02
44 157 0.96
45 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (44 bp):
GAGAAAAGATTTGTAGCTTTAATCTGCTCCAATGTAACTTTAAG
Found at i:18962266 original size:132 final size:132
Alignment explanation
Indices: 18961969--18962634 Score: 886
Period size: 132 Copynumber: 5.1 Consensus size: 132
18961959 ACCGGGAAAG
* * * *
18961969 AAGATCTACAATCTTCAGCCTACTCCACTGCTACTCAAGGAGACAAGGCTAGTGGCTTAAATCTG
1 AAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTG
* *
18962034 CTTCCCTACTACCTCGGGAAGATAAGATTC-GCGTCTACGATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACTACCTCGGGAAGATAAGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
18962098 AT
131 AT
* * * * *
18962100 AAGATTTACAATCTTCAACCTGCTCTACTGCTGCTCAGGGAGACAAGGCTGGTGGCTTAAATCTG
1 AAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTG
* * * * * * **
18962165 CTTTCCTACTACCTCGAGAAGATAAAATTCATCGTCTTCAATCTGCTCCTCTACTACTTATTGAG
66 CTTCCCTACTACCTCGGGAAGATAAGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
18962230 AT
131 AT
* * ** * *
18962232 AAGATCAACAATCTTCATCCTGCTCCAC-GTCTGCTCAAAGAGATAAGGCTAGTGCCTTATATCT
1 AAGATCTACAATCTTCAGCCTGCTCCACTG-CTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCT
* * * *
18962296 ACTTCCCTACTACCTCGAGAAGATAAGATTCGTCGTCTTCGATCTACTCCACTACTGCTTAGGGA
65 GCTTCCCTACTACCTCGGGAAGATAAGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
*
18962361 AAT
130 GAT
* * * * *
18962364 AAGATCTACAATTTTCAGTCTGCTCTACTGCTGCTCAGGGAGATAAGGATAGTGGCTTAAATCTA
1 AAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTG
* ** * *
18962429 CTTCCATACTACCTCGGGAAGATAAGATTCATTATCTTCAATCTACTCCACTACTGCTTAGGGAG
66 CTTCCCTACTACCTCGGGAAGATAAGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
18962494 AT
131 AT
* *
18962496 AAGATCTACAATCTTCAGCTTGCTCCACTGCTTCTCAGGGAGATAAGGCTAGTGGCTTAAATCTG
1 AAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTG
* ** * *
18962561 CTTCCCTACTACCTCGGGAAGATAATATTCGCCATCTTCGATCTGCCCCACTACTGCTTAGGGAG
66 CTTCCCTACTACCTCGGGAAGATAAGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
18962626 AT
131 AT
18962628 AAGATCT
1 AAGATCT
18962635 CTGAATTCAC
Statistics
Matches: 462, Mismatches: 70, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
131 86 0.19
132 375 0.81
133 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (132 bp):
AAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTG
CTTCCCTACTACCTCGGGAAGATAAGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
AT
Found at i:18962510 original size:44 final size:43
Alignment explanation
Indices: 18962331--18962512 Score: 136
Period size: 44 Copynumber: 4.1 Consensus size: 43
18962321 AGATTCGTCG
* *
18962331 TCTTCGATCTACTCCACTACTGCTTAGGGAAATAAGATCTACAA
1 TCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGAT-TACAA
* * * * * * ***
18962375 TTTTCAGTCTGCTCTACTGCTGCTCAGGGAGATAAGGA-TAGTG
1 TCTTCAATCTACTCCACTACTGCTTAGGGAGATAA-GATTACAA
* * * * *
18962418 GCTTAAATCTACTTCCA-TACTACCTCGGGAAGATAAGATT-CATTA
1 TCTTCAATCTAC-TCCACTACTGCTTAGGG-AGATAAGATTACA--A
18962463 TCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAA
1 TCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGAT-TACAA
18962507 TCTTCA
1 TCTTCA
18962513 GCTTGCTCCA
Statistics
Matches: 99, Mismatches: 30, Indels: 18
0.67 0.20 0.12
Matches are distributed among these distances:
43 18 0.18
44 57 0.58
45 22 0.22
46 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (43 bp):
TCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATTACAA
Found at i:18965800 original size:70 final size:70
Alignment explanation
Indices: 18965687--18966089 Score: 513
Period size: 70 Copynumber: 5.8 Consensus size: 70
18965677 GGTAAAGTGC
* * * * * ** *
18965687 GAAATGTAGGTATGGTAT-AACCATACCGAATTGTGAAATGTAGGTATGGCATCGTCCATACTAA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
* *
18965751 GCTAT
66 GTTGT
* * * * * * * *
18965756 GATACGTAGGTATGGTATTAACCATATCGAGTTGTGAAACGTAGGTATGGTATTAACCATACCGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
*
18965821 GATGT
66 GTTGT
18965826 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
18965891 GTTGT
66 GTTGT
*
18965896 GAAACGTAGGCATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
18965961 GTTGT
66 GTTGT
* * *
18965966 GAAACGTAGGCATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATGCATACTAA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
**
18966031 GTTAA
66 GTTGT
* * * * *
18966036 GAAATGTAGGTATGGAAT-TTCCCATACCGAGTTGTGAAATGTAGGTATAGTATT
1 GAAACGTAGGTATGGTATCAT-CCATACCGAGTTGAGAAATGTAGGTATGGTATT
18966090 TCAATGAGGA
Statistics
Matches: 299, Mismatches: 33, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
69 17 0.06
70 282 0.94
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (70 bp):
GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
GTTGT
Found at i:18966091 original size:35 final size:34
Alignment explanation
Indices: 18965687--18966091 Score: 396
Period size: 35 Copynumber: 11.6 Consensus size: 34
18965677 GGTAAAGTGC
** *
18965687 GAAATGTAGGTATGGTATAACCATACCGAATTGT
1 GAAATGTAGGTATGGTATTTCCATACCGAGTTGT
* * ** * *
18965721 GAAATGTAGGTATGGCATCGTCCATACTAAGCTAT
1 GAAATGTAGGTATGGTAT-TTCCATACCGAGTTGT
* * * *
18965756 GATACGTAGGTATGGTATTAACCATATCGAGTTGT
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
* * *
18965791 GAAACGTAGGTATGGTATTAACCATACCGAGATGT
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
* * *
18965826 GAAACGTAGGTATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTAT-TTCCATACCGAGTTGT
*
18965861 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
* * * *
18965896 GAAACGTAGGCATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTAT-TTCCATACCGAGTTGT
*
18965931 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
* * * *
18965966 GAAACGTAGGCATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTAT-TTCCATACCGAGTTGT
* ** **
18966001 GAAATGTAGGTATGGTATTATGCATACTAAGTTAA
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
*
18966036 GAAATGTAGGTATGGAATTTCCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTT-CCATACCGAGTTGT
*
18966071 GAAATGTAGGTATAGTATTTC
1 GAAATGTAGGTATGGTATTTC
18966092 AATGAGGAAA
Statistics
Matches: 303, Mismatches: 59, Indels: 18
0.80 0.16 0.05
Matches are distributed among these distances:
34 19 0.06
35 284 0.94
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (34 bp):
GAAATGTAGGTATGGTATTTCCATACCGAGTTGT
Found at i:18966978 original size:20 final size:20
Alignment explanation
Indices: 18966942--18966991 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
18966932 TTTCTTCTCT
18966942 TTTTTTGATTATATTTT-TTAA
1 TTTTTT-ATTATATTTTATT-A
18966963 TTTTTTATTGAT-TTTTATTA
1 TTTTTTATT-ATATTTTATTA
18966983 TTTTTTATT
1 TTTTTTATT
18966992 TTTTTTATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 17 0.63
21 10 0.37
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (20 bp):
TTTTTTATTATATTTTATTA
Found at i:18971672 original size:3 final size:3
Alignment explanation
Indices: 18971573--18971652 Score: 65
Period size: 3 Copynumber: 26.7 Consensus size: 3
18971563 TGGTGAAAAA
*** * *
18971573 AAT AAT AAT AAT AAT AAT AAT ACA- AAT TCC AAC AACG AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT AAT
* *
18971618 AAT AGT AAT AAT AGT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
18971653 CGACGACATG
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
2 3 0.05
3 57 0.90
4 3 0.05
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:18973877 original size:13 final size:12
Alignment explanation
Indices: 18973859--18973906 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
18973849 CGTTTGCCTG
18973859 TTTCTTTTTCTTT
1 TTTC-TTTTCTTT
* *
18973872 TTTCTTTCCCTT
1 TTTCTTTTCTTT
18973884 TTTCTTTTCTTT
1 TTTCTTTTCTTT
*
18973896 CTTTCCTTTCT
1 -TTTCTTTTCT
18973907 ATTTAGCTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
12 16 0.55
13 13 0.45
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTCTTTTCTTT
Found at i:18973898 original size:21 final size:19
Alignment explanation
Indices: 18973862--18973901 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
18973852 TTGCCTGTTT
18973862 CTTTTTCTTTTTTCTTTCC
1 CTTTTTCTTTTTTCTTTCC
18973881 CTTTTTCTTTTCTTTCTTTCC
1 CTTTTTC-TTT-TTTCTTTCC
18973902 TTTCTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
20 3 0.16
21 9 0.47
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (19 bp):
CTTTTTCTTTTTTCTTTCC
Found at i:18977564 original size:14 final size:15
Alignment explanation
Indices: 18977535--18977570 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
18977525 CAAAACTAAT
18977535 ATTTTTACGATATTC
1 ATTTTTACGATATTC
18977550 ATTTTTACGAT-TTC
1 ATTTTTACGATATTC
18977564 ATTTTTA
1 ATTTTTA
18977571 TTTAAATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTTTTACGATATTC
Found at i:18982467 original size:2 final size:2
Alignment explanation
Indices: 18982460--18982485 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
18982450 ATATCACATT
18982460 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
18982486 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:18983057 original size:22 final size:20
Alignment explanation
Indices: 18983009--18983065 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
18982999 TAATCATTTG
* *
18983009 ATTAATAAATATCTTTTATA
1 ATTAATAAATATATTTAATA
18983029 ATTAATAAATATATATTAATA
1 ATTAATAAATATAT-TTAATA
*
18983050 ATTAAATACATATATT
1 ATT-AATAAATATATT
18983066 ACAAATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.41
21 9 0.28
22 10 0.31
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTAATAAATATATTTAATA
Found at i:18983580 original size:16 final size:15
Alignment explanation
Indices: 18983557--18983591 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
18983547 ACAATTTAAT
*
18983557 TTATTTATCATATAA
1 TTATTTATAATATAA
18983572 TTATCTTATAATATAA
1 TTAT-TTATAATATAA
18983588 TTAT
1 TTAT
18983592 AATAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTTATAATATAA
Found at i:18983635 original size:25 final size:22
Alignment explanation
Indices: 18983583--18983637 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 22
18983573 TATCTTATAA
18983583 TATAATTATAATAAATTAATTT
1 TATAATTATAATAAATTAATTT
*
18983605 AATAATTACTAATAAATATATATTT
1 TATAATTA-TAATAAAT-TA-ATTT
18983630 TATAATTA
1 TATAATTA
18983638 AAATCTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 7 0.25
23 8 0.29
24 2 0.07
25 11 0.39
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TATAATTATAATAAATTAATTT
Found at i:18997397 original size:17 final size:17
Alignment explanation
Indices: 18997344--18997399 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
18997334 TGTTAAAATT
* *
18997344 TATATTATTTTATAATA
1 TATATTAATTAATAATA
*
18997361 TAT-TTAATTTCAT-ATAA
1 TATATTAA-TTAATAAT-A
18997378 TATATTAATTAATAATA
1 TATATTAATTAATAATA
18997395 TATAT
1 TATAT
18997400 AAGAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 5 0.16
17 21 0.66
18 6 0.19
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATTAATTAATAATA
Found at i:18997810 original size:20 final size:20
Alignment explanation
Indices: 18997785--18997834 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
18997775 TGGCTTAAAA
18997785 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
18997805 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
18997822 GTGGTAGTGGATT
1 TTGGTAGTGGATT
18997835 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:19000577 original size:20 final size:20
Alignment explanation
Indices: 19000552--19000601 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
19000542 TGGCTTAAAA
19000552 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
19000572 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
19000589 GTGGTAGTGGATT
1 TTGGTAGTGGATT
19000602 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:19009797 original size:21 final size:22
Alignment explanation
Indices: 19009771--19009815 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
19009761 TGATATTACA
19009771 TTATTATTATTTT-CTTTCTAT
1 TTATTATTATTTTCCTTTCTAT
* *
19009792 TTATTATTTTTTTCCTTTTTAT
1 TTATTATTATTTTCCTTTCTAT
19009814 TT
1 TT
19009816 TATTTTCGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.76
Consensus pattern (22 bp):
TTATTATTATTTTCCTTTCTAT
Found at i:19010535 original size:12 final size:12
Alignment explanation
Indices: 19010518--19010565 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
19010508 TGTTTATCTC
19010518 TTTATATTTATG
1 TTTATATTTATG
19010530 TTTATATTTTATG
1 TTTATA-TTTATG
** *
19010543 TATTATACCTATC
1 T-TTATATTTATG
19010556 TTTATATTTA
1 TTTATATTTA
19010566 CGCATGAACA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 13 0.45
13 11 0.38
14 5 0.17
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (12 bp):
TTTATATTTATG
Found at i:19010749 original size:22 final size:22
Alignment explanation
Indices: 19010715--19010756 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
19010705 TAACATGCTA
** *
19010715 TTATTACTTTTATTTTTATTTT
1 TTATTACCATTATTGTTATTTT
19010737 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
19010757 GTACTTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.69
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTT
Found at i:19011469 original size:3 final size:3
Alignment explanation
Indices: 19011461--19011485 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
19011451 AAGCATAAAC
19011461 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
19011486 GGAATATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:19011621 original size:3 final size:3
Alignment explanation
Indices: 19011607--19011657 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
19011597 ACACTAGTAC
* * * * *
19011607 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA AT- ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
19011654 ATA A
1 ATA A
19011658 GGATATTTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:19016722 original size:74 final size:75
Alignment explanation
Indices: 19016599--19016758 Score: 207
Period size: 74 Copynumber: 2.1 Consensus size: 75
19016589 AATATGAAGA
* * * *
19016599 ACACATAATGAAGGTATTAAAGGATGCTAATGTATTATTGCAAAACATTAAACAAAGATGCATTT
1 ACACATAATGAAGGTATTAAAAGATGCAAATGTATTAATGCAAAACATTAAAAAAAGATGCATTT
*
19016664 AATAAACAAG
66 AACAAACAAG
* *
19016674 ACACATAATGCAA-GT-TTAAAATATGCAAATGTATTAATGTAAAACATTAAAAAAAGATGCATT
1 ACACATAATG-AAGGTATTAAAAGATGCAAATGTATTAATGCAAAACATTAAAAAAAGATGCATT
* *
19016737 TAACCAACATG
65 TAACAAACAAG
*
19016748 ACACAAAATGA
1 ACACATAATGA
19016759 TGCAAAACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
73 1 0.01
74 59 0.80
75 12 0.16
76 2 0.03
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (75 bp):
ACACATAATGAAGGTATTAAAAGATGCAAATGTATTAATGCAAAACATTAAAAAAAGATGCATTT
AACAAACAAG
Found at i:19021359 original size:25 final size:25
Alignment explanation
Indices: 19021306--19021421 Score: 110
Period size: 25 Copynumber: 4.6 Consensus size: 25
19021296 ATACATGTAT
* *
19021306 GCTCATACGAGCTCTGAATCA--GTAT
1 GCTCATACGAG--CTGAATAATGGTAA
* *
19021331 GCTCTTACGAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATAATGGTAA
* *
19021356 GCTCCTCCGAGCTGAATAATGGTAA
1 GCTCATACGAGCTGAATAATGGTAA
** *
19021381 GCTCATGTGAGCTGAGTAATGGTAA
1 GCTCATACGAGCTGAATAATGGTAA
*
19021406 GCTCATACGAGATGAA
1 GCTCATACGAGCTGAA
19021422 ATCAATAACC
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
23 7 0.09
25 68 0.91
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAATGGTAA
Found at i:19036972 original size:23 final size:25
Alignment explanation
Indices: 19036946--19036993 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
19036936 GGGAATGATG
*
19036946 ACAATTAAAA-GATTGA-AGATTTA
1 ACAAATAAAACGATTGAGAGATTTA
19036969 ACAAATAAAATCGATTGAGAGATTT
1 ACAAATAAAA-CGATTGAGAGATTT
19036994 GGGAGAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
25 6 0.29
26 6 0.29
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (25 bp):
ACAAATAAAACGATTGAGAGATTTA
Found at i:19039903 original size:27 final size:27
Alignment explanation
Indices: 19039872--19040049 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
19039862 TAAATTGTAC
19039872 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
19039899 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19039925 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
19039953 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
19039981 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19040008 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
19040035 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
19040050 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:19039986 original size:82 final size:81
Alignment explanation
Indices: 19039873--19040028 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
19039863 AAATTGTACA
* *
19039873 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
19039937 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
19039954 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
19040019 TGCGAGTTGA
65 TGCGAATTGA
19040029 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:19040040 original size:82 final size:81
Alignment explanation
Indices: 19039869--19040049 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
19039859 GATTAAATTG
* *
19039869 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
19039934 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
19039950 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
19040014 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
19040032 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
19040050 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:19041740 original size:32 final size:32
Alignment explanation
Indices: 19041704--19041769 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
19041694 ATACTATAAG
*
19041704 ACATAATTTTTTCTTATCGTATTTTTATTCAT
1 ACATAATTTTTTCTTATAGTATTTTTATTCAT
19041736 ACATAATTTTTTCTTATAGTATTTTTATTCAT
1 ACATAATTTTTTCTTATAGTATTTTTATTCAT
19041768 AC
1 AC
19041770 CGTCTGGCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (32 bp):
ACATAATTTTTTCTTATAGTATTTTTATTCAT
Found at i:19045860 original size:282 final size:282
Alignment explanation
Indices: 19045356--19045920 Score: 1121
Period size: 282 Copynumber: 2.0 Consensus size: 282
19045346 GAAAACCTTG
19045356 GTCTCCACTCTGAGTATAGCGAAACTGATGAAGTCACTCTCACTAATGGTAAATCTCTGTCCATT
1 GTCTCCACTCTGAGTATAGCGAAACTGATGAAGTCACTCTCACTAATGGTAAATCTCTGTCCATT
19045421 GCTCGTCTCGGTTCTAATACAATTACTATTGGTTCTCATTCTTTTTCGCTTCATAATATTCTTCA
66 GCTCGTCTCGGTTCTAATACAATTACTATTGGTTCTCATTCTTTTTCGCTTCATAATATTCTTCA
19045486 TATTCTAGAAGCTAATCTCAATTTGCTTTCTATTCCTCAGTTTACTAAATCTAATGATGTTTCTG
131 TATTCTAGAAGCTAATCTCAATTTGCTTTCTATTCCTCAGTTTACTAAATCTAATGATGTTTCTG
19045551 TGGAATTTTTCTCTGACCATTTTGTGATTAAGGATCTCAAGACGAAGCAGGTACTTCATCAGGGA
196 TGGAATTTTTCTCTGACCATTTTGTGATTAAGGATCTCAAGACGAAGCAGGTACTTCATCAGGGA
19045616 GTCATTAGAGATGGCCTATATT
261 GTCATTAGAGATGGCCTATATT
*
19045638 GTCTCCACTCTGAGTATAGCGGAACTGATGAAGTCACTCTCACTAATGGTAAATCTCTGTCCATT
1 GTCTCCACTCTGAGTATAGCGAAACTGATGAAGTCACTCTCACTAATGGTAAATCTCTGTCCATT
19045703 GCTCGTCTCGGTTCTAATACAATTACTATTGGTTCTCATTCTTTTTCGCTTCATAATATTCTTCA
66 GCTCGTCTCGGTTCTAATACAATTACTATTGGTTCTCATTCTTTTTCGCTTCATAATATTCTTCA
19045768 TATTCTAGAAGCTAATCTCAATTTGCTTTCTATTCCTCAGTTTACTAAATCTAATGATGTTTCTG
131 TATTCTAGAAGCTAATCTCAATTTGCTTTCTATTCCTCAGTTTACTAAATCTAATGATGTTTCTG
19045833 TGGAATTTTTCTCTGACCATTTTGTGATTAAGGATCTCAAGACGAAGCAGGTACTTCATCAGGGA
196 TGGAATTTTTCTCTGACCATTTTGTGATTAAGGATCTCAAGACGAAGCAGGTACTTCATCAGGGA
19045898 GTCATTAGAGATGGCCTATATT
261 GTCATTAGAGATGGCCTATATT
19045920 G
1 G
19045921 GCTGGCCGTA
Statistics
Matches: 282, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
282 282 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (282 bp):
GTCTCCACTCTGAGTATAGCGAAACTGATGAAGTCACTCTCACTAATGGTAAATCTCTGTCCATT
GCTCGTCTCGGTTCTAATACAATTACTATTGGTTCTCATTCTTTTTCGCTTCATAATATTCTTCA
TATTCTAGAAGCTAATCTCAATTTGCTTTCTATTCCTCAGTTTACTAAATCTAATGATGTTTCTG
TGGAATTTTTCTCTGACCATTTTGTGATTAAGGATCTCAAGACGAAGCAGGTACTTCATCAGGGA
GTCATTAGAGATGGCCTATATT
Found at i:19049293 original size:45 final size:45
Alignment explanation
Indices: 19049186--19049358 Score: 145
Period size: 45 Copynumber: 3.8 Consensus size: 45
19049176 CGGCTTGAAG
* * * *
19049186 AAAATGAATAAGACTATAGTTGAAAGACACTATGGCACTATA-CTG
1 AAAATGAATAAGACCATAGATGAAAGACACTATGGCATTATATC-A
* * * *
19049231 GAACTGAATAAGTCCATAGATGAAAGAAACTATGGCATTATATCA
1 AAAATGAATAAGACCATAGATGAAAGACACTATGGCATTATATCA
* * * *
19049276 AAAATGAGTAAGACCATA-ACTGAAAGACGCTATGGCATAATGAT-T
1 AAAATGAATAAGACCATAGA-TGAAAGACACTATGGCATTAT-ATCA
* * * * *
19049321 ATAATGAGTAAGACCATAGCTAAAAGACATTATGGCAT
1 AAAATGAATAAGACCATAGATGAAAGACACTATGGCAT
19049359 CACAATTGTA
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
44 1 0.01
45 99 0.96
46 3 0.03
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (45 bp):
AAAATGAATAAGACCATAGATGAAAGACACTATGGCATTATATCA
Done.