Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 75 of 126
Found at i:22458483 original size:23 final size:23
Alignment explanation
Indices: 22458457--22458575 Score: 150
Period size: 23 Copynumber: 5.2 Consensus size: 23
22458447 ATAAGTGCCA
22458457 CACTAATATGTAGCCGAAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
* * *
22458480 CACTAATACGTAGCTGTAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
* *
22458503 CACTAAAATATAGCCGAAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
** *
22458526 CACTGGTATGTAGCCGTAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
22458549 CACTGAA-ATGTAGCCGAAGCTAC
1 CACT-AATATGTAGCCGAAGCTAC
22458572 CACT
1 CACT
22458576 GATCAATAAC
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
23 79 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (23 bp):
CACTAATATGTAGCCGAAGCTAC
Found at i:22458576 original size:46 final size:46
Alignment explanation
Indices: 22458457--22458578 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
22458447 ATAAGTGCCA
* * *
22458457 CACTAATATGTAGCCGAAGCTACCACTAATACGTAGCTGTAGCTAC
1 CACTAAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
* * *
22458503 CACTAAAATATAGCCGAAGCTACCACTGGTATGTAGCCGTAGCTAC
1 CACTAAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
*
22458549 CACTGAAATGTAGCCGAAGCTACCACTGAT
1 CACTAAAATGTAGCCGAAGCTACCACTGAT
22458579 CAATAACACT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (46 bp):
CACTAAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
Found at i:22458830 original size:18 final size:17
Alignment explanation
Indices: 22458804--22458842 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
22458794 ATTTTCCTTC
22458804 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
22458821 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
22458839 CACA
1 CACA
22458843 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:22462208 original size:3 final size:3
Alignment explanation
Indices: 22462200--22462246 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
22462190 GAATCATGGA
*
22462200 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TAT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
22462247 ATTTTCATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:22464061 original size:3 final size:3
Alignment explanation
Indices: 22464055--22464083 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
22464045 TTATTATTAT
22464055 TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
22464084 TGGTATTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:22467258 original size:6 final size:6
Alignment explanation
Indices: 22467247--22467283 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
22467237 TTTTTCAACC
* *
22467247 CCAAAT CCAAAT CCAAAT CCAAAC CCAAAC CCAAAT C
1 CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT C
22467284 TAATTCCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.49, C:0.41, G:0.00, T:0.11
Consensus pattern (6 bp):
CCAAAT
Found at i:22471793 original size:15 final size:16
Alignment explanation
Indices: 22471758--22471791 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
22471748 TCATTTGTTG
22471758 TTTAAAATTGTTATTA
1 TTTAAAATTGTTATTA
22471774 TTTAAATATTGTT-TTA
1 TTTAAA-ATTGTTATTA
22471790 TT
1 TT
22471792 AATTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTAAAATTGTTATTA
Found at i:22472132 original size:27 final size:27
Alignment explanation
Indices: 22472074--22472136 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
22472064 TTAAATTATT
**
22472074 TATATTTTATAATTCAATATTTTTGTA
1 TATATTTTATAATTCAATATTTTAATA
22472101 TATATTTT-TAATTCAATATCATTTAATA
1 TATATTTTATAATTCAATAT--TTTAATA
22472129 -ATATTTTA
1 TATATTTTA
22472137 AACCCTACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 11 0.35
27 15 0.48
28 5 0.16
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (27 bp):
TATATTTTATAATTCAATATTTTAATA
Found at i:22472372 original size:19 final size:19
Alignment explanation
Indices: 22472341--22472391 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
22472331 GTTTATGGTA
*
22472341 ATTA-AATAATATTTATTT
1 ATTATAATAATATTTATCT
*
22472359 ATTATAATAGTATTTATCT
1 ATTATAATAATATTTATCT
22472378 -TTATAATAAATATT
1 ATTATAAT-AATATT
22472392 AAATTTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.39
19 17 0.61
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
ATTATAATAATATTTATCT
Found at i:22472639 original size:162 final size:160
Alignment explanation
Indices: 22472471--22472784 Score: 431
Period size: 164 Copynumber: 1.9 Consensus size: 160
22472461 AATTTTGAAA
*
22472471 TTTAAACTA-ATTTCTTTAAAGATGAATAAA-A-ATATTATTTAAATTAAATTTTCTA-TGAAAG
1 TTTAAACTATATTTCTTTAAAGATAAATAAAGATATATT-TTTAAATTAAATTTTCTAGT-AAAG
* * *
22472532 TTTTAACTTTAAACTAAATATTAAAATTAGTAAATTTATAATTTATAATTTA-AATAAAAAATAT
64 TTTTAACTTTAAACTAAATATTAAAATTA-AAAATTT-TAATTCAGAATTTAGAAT-AAAAATAT
22472596 TAAAATTAAATTGTGTTATAGATTTTTATGAAAGGAT
126 TAAAATT-AATT-TGTTATAGATTTTTATGAAAGGAT
* * * *
22472633 TTTAAACTATATTTTTTTAATGATAAATAAAGATATATTTTTAAATTAAATTTTCTAGTAGATTT
1 TTTAAACTATATTTCTTTAAAGATAAATAAAGATATATTTTTAAATTAAATTTTCTAGTAAAGTT
*
22472698 TTAACTTTAAACTAAATATTAAAATTAAAAATTTTAATTCAGAATTTAGAATAAAAATATTGAAA
66 TTAACTTTAAACTAAATATTAAAATTAAAAATTTTAATTCAGAATTTAGAATAAAAATATTAAAA
* *
22472763 TTAATTTTTTATGGATTTTTAT
131 TTAATTTGTTATAGATTTTTAT
22472785 TAAAATTAAT
Statistics
Matches: 136, Mismatches: 11, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
160 14 0.10
161 4 0.03
162 35 0.26
163 27 0.20
164 50 0.37
165 6 0.04
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (160 bp):
TTTAAACTATATTTCTTTAAAGATAAATAAAGATATATTTTTAAATTAAATTTTCTAGTAAAGTT
TTAACTTTAAACTAAATATTAAAATTAAAAATTTTAATTCAGAATTTAGAATAAAAATATTAAAA
TTAATTTGTTATAGATTTTTATGAAAGGAT
Found at i:22472921 original size:13 final size:13
Alignment explanation
Indices: 22472890--22472922 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
22472880 ATGATAGATA
*
22472890 TTAAATTTAAAAT
1 TTAAATATAAAAT
22472903 TT-AATATAAAAT
1 TTAAATATAAAAT
22472915 TTAAATAT
1 TTAAATAT
22472923 TATTTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TTAAATATAAAAT
Found at i:22482882 original size:29 final size:29
Alignment explanation
Indices: 22482740--22482919 Score: 119
Period size: 29 Copynumber: 6.2 Consensus size: 29
22482730 AACCGTCCTA
* * *
22482740 TTTCATATTCGATGGTCAAAAGC-ATCGCT
1 TTTCATAATCGATGGTCGAAA-CTATCCCT
* * **
22482769 TTTCATAATCGATAGCCGAAGTTATCCCT
1 TTTCATAATCGATGGTCGAAACTATCCCT
* ** ** *
22482798 TTTCATATTTAATGGTCGTCACAATCCCT
1 TTTCATAATCGATGGTCGAAACTATCCCT
* ** * ** *
22482827 TTTCATGATTTATGATCGTCACCATCCCT
1 TTTCATAATCGATGGTCGAAACTATCCCT
*
22482856 TTTCATAATCGATAGTCGAAACTATCCCT
1 TTTCATAATCGATGGTCGAAACTATCCCT
* * * *
22482885 TTTCATATTCGATGGCCGGAGCTATCCCT
1 TTTCATAATCGATGGTCGAAACTATCCCT
22482914 TTTCAT
1 TTTCAT
22482920 TGGTCGATGA
Statistics
Matches: 115, Mismatches: 35, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (29 bp):
TTTCATAATCGATGGTCGAAACTATCCCT
Found at i:22488064 original size:50 final size:50
Alignment explanation
Indices: 22487942--22488235 Score: 354
Period size: 50 Copynumber: 5.8 Consensus size: 50
22487932 GATCATAACA
* * ** * * *
22487942 TGCCAAAGCCCTGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
22487993 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
** * * *
22488043 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * ** *
22488094 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
22488144 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
22488194 TGCCAACACCATGTCCTAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22488236 TTACCCAAAT
Statistics
Matches: 205, Mismatches: 37, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
50 132 0.64
51 73 0.36
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:22488117 original size:101 final size:101
Alignment explanation
Indices: 22487942--22488224 Score: 451
Period size: 101 Copynumber: 2.8 Consensus size: 101
22487932 GATCATAACA
* *
22487942 TGCCAAAGCCCTGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAGTGCCCATGCCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAGTGCCCATGCCATGT
22488007 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
66 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
22488043 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAGTGCCCATGCCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAGTGCCCATGCCATGT
*
22488108 CCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
66 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
** * * * * **
22488144 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAACACCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAGTGCCCATGCCATGT
*
22488208 CCTAGACATGGTCTTAC
66 CCCAGACATGGTCTTAC
22488225 ATGGGATCTC
Statistics
Matches: 170, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
100 35 0.21
101 135 0.79
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (101 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCATATCAGTGCCCATGCCATGT
CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
Found at i:22505258 original size:37 final size:37
Alignment explanation
Indices: 22505217--22505290 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
22505207 TGTTGTCATG
22505217 ATTAGTCTTCAATCACATCCTCAATTACAATAACAAT
1 ATTAGTCTTCAATCACATCCTCAATTACAATAACAAT
*
22505254 ATTAGTCTTCAATCACATCTTCAATTACAATAACAAT
1 ATTAGTCTTCAATCACATCCTCAATTACAATAACAAT
22505291 CACAATCTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.41, C:0.23, G:0.03, T:0.34
Consensus pattern (37 bp):
ATTAGTCTTCAATCACATCCTCAATTACAATAACAAT
Found at i:22512998 original size:19 final size:21
Alignment explanation
Indices: 22512965--22513012 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
22512955 AGGAAGACAC
22512965 AAAAAGA-AATCAAAAA-AG-
1 AAAAAGAGAATCAAAAAGAGT
*
22512983 AAAAAGAGAATGAAAAAGAGT
1 AAAAAGAGAATCAAAAAGAGT
22513004 AAAAAGAGA
1 AAAAAGAGA
22513013 TTGAGAGTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.27
19 8 0.31
20 2 0.08
21 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.19, T:0.06
Consensus pattern (21 bp):
AAAAAGAGAATCAAAAAGAGT
Found at i:22521867 original size:70 final size:70
Alignment explanation
Indices: 22521719--22522389 Score: 530
Period size: 70 Copynumber: 9.6 Consensus size: 70
22521709 CAGTTAGTGC
** * * * * **
22521719 GAGCTCAAGCTCTTAGCTGTGATTTTAAGGCTCACAGTTTCAATGC-GCAACCTCCAAAATAGTT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCAACCTCCAAAATAGTT
*
22521783 AGCAC
66 AGCAT
* * *
22521788 GAGCTCAAGCTTCCAACTGTGGTCTTAAGGCTCGCAGGTTCAACACTGCAACCTCTAAAATAGTT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCAACCTCCAAAATAGTT
**
22521853 AGTGT
66 AGCAT
* ** ** * * * *
22521858 TAGCTCAAGCTCTTAGTTGTGATTTTAAGGCTCGTAGGTTCAACA-TCGTAGCCTCCAAAATAGT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACT-GCAACCTCCAAAATAGT
22521922 TAGCAT
65 TAGCAT
* * * * * * * *
22521928 GAGCTCGAGCTCCTAACTGTGATATTAAGGCTCGCAAGTTCACCACCGTAGCCTCCAAAATAGTT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCAACCTCCAAAATAGTT
**
22521993 AGCGC
66 AGCAT
* * * * * * *
22521998 GAGCTCAAGCTCCCAACTGTGATCTTAAAGCTCACAGGTTCAACATTGTAGCCTCTAAAATAGCT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCAACCTCCAAAATAGTT
22522063 AGCAT
66 AGCAT
* * * * *
22522068 GAGATCAAGCTCCCAACTGTGATCTTAAGGCTCGTATGTTCAACA-T-CACAGCCTCTAAAACAG
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCA-A-CCTCCAAAATAG
22522131 TTAGCAT
64 TTAGCAT
* * * * * * *
22522138 GAGCTCAAACTCCCAATTGTGATCTTAAGGCTTGCAGGTTTAACA-TCGCAACCTCCTAAACAAT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACT-GCAACCTCCAAAATAGT
22522202 TAGCGA-
65 TAGC-AT
* * * * * **
22522208 AAGCTCAAGCTCCCAGCTGTGATCTTAATGCTCGTAAGTTCAATGCTGC-ACCTCCAAAATAGTT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCAACCTCCAAAATAGTT
* **
22522272 AACGC
66 AGCAT
* * * * * ** * * * *
22522277 GAGGTCAAACTCTCAACTGTGATCTTAAGGCCCACAATTTCAACACTGGAGCCTCCTAAACAGTT
1 GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCAACCTCCAAAATAGTT
22522342 AGC-T
66 AGCAT
* * * * *
22522346 AGAGCTTAAACTCCCAGCTGTGATCTTAAGGCTCACAGGCTCAA
1 -GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAA
22522390 AAACTCCACC
Statistics
Matches: 476, Mismatches: 114, Indels: 23
0.78 0.19 0.04
Matches are distributed among these distances:
68 1 0.00
69 88 0.18
70 382 0.80
71 3 0.01
72 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (70 bp):
GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACTGCAACCTCCAAAATAGTT
AGCAT
Found at i:22521969 original size:140 final size:140
Alignment explanation
Indices: 22521710--22522379 Score: 591
Period size: 140 Copynumber: 4.8 Consensus size: 140
22521700 CCTTCAAAGC
* ** * * *
22521710 AGTTAGTGCGAGCTCAAGCTCTTAGCTGTGATTTTAAGGCTCACAGTTTC-A-ATGCGCAACCTC
1 AGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCACAGGTTCAACAT-CGCAACCTC
* * * *
22521773 CAAAATAGTTAGCACGAGCTCAAGCTTCCAACTGTGGTCTTAAGGCTCGCAGGTTCAACACTGCA
65 CAAAATAGTTAGCATGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAAGTTCAACACTGCA
*
22521838 ACCTCTAAAAT
130 ACCTCCAAAAT
* ** ** ** * ** * *
22521849 AGTTAGTGTTAGCTCAAGCTCTTAGTTGTGATTTTAAGGCTCGTAGGTTCAACATCGTAGCCTCC
1 AGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCACAGGTTCAACATCGCAACCTCC
* * * * * * *
22521914 AAAATAGTTAGCATGAGCTCGAGCTCCTAACTGTGATATTAAGGCTCGCAAGTTCACCACCGTAG
66 AAAATAGTTAGCATGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAAGTTCAACACTGCAA
22521979 CCTCCAAAAT
131 CCTCCAAAAT
* * * * *
22521989 AGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAAGCTCACAGGTTCAACATTGTAGCCTCT
1 AGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCACAGGTTCAACATCGCAACCTCC
* * * *
22522054 AAAATAGCTAGCATGAGATCAAGCTCCCAACTGTGATCTTAAGGCTCGTATGTTCAACA-T-CAC
66 AAAATAGTTAGCATGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAAGTTCAACACTGCA-
* *
22522117 AGCCTCTAAAAC
130 A-CCTCCAAAAT
** * * ** *
22522129 AGTTAGCATGAGCTCAAACTCCCAATTGTGATCTTAAGGCTTGCAGGTTTAACATCGCAACCTCC
1 AGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCACAGGTTCAACATCGCAACCTCC
* * * * * * * **
22522194 TAAACAATTAGCGA-AAGCTCAAGCTCCCAGCTGTGATCTTAATGCTCGTAAGTTCAATGCTGC-
66 AAAATAGTTAGC-ATGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAAGTTCAACACTGCA
22522257 ACCTCCAAAAT
130 ACCTCCAAAAT
* * * * * ** * *
22522268 AGTTAACGCGAGGTCAAACTCTCAACTGTGATCTTAAGGCCCACAATTTCAACA-CTGGAGCCTC
1 AGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCACAGGTTCAACATC-GCAACCTC
* * * * *
22522332 CTAAACAGTTAGC-TAGAGCTTAAACTCCCAGCTGTGATCTTAAGGCTC
65 CAAAATAGTTAGCAT-GAGCTCAAGCTCCCAACTGTGATCTTAAGGCTC
22522380 ACAGGCTCAA
Statistics
Matches: 431, Mismatches: 90, Indels: 20
0.80 0.17 0.04
Matches are distributed among these distances:
138 2 0.00
139 141 0.33
140 283 0.66
141 4 0.01
142 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (140 bp):
AGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCACAGGTTCAACATCGCAACCTCC
AAAATAGTTAGCATGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAAGTTCAACACTGCAA
CCTCCAAAAT
Found at i:22522135 original size:210 final size:210
Alignment explanation
Indices: 22521764--22522379 Score: 599
Period size: 210 Copynumber: 2.9 Consensus size: 210
22521754 AGTTTCAATG
* * * * *
22521764 CGCAACCTCCAAAATAGTTAGCACGAGCTCAAGCTTCCAACTGTGGTCTTAAGGCTCGCAGGTTC
1 CGCAACCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAAGCTCACAGGTTC
* ** * * ** ** *
22521829 AACACTGCAACCTCTAAAATAGTTAGTGTTAGCTCAAGCTCTTAGTTGTGATTTTAAGGCTCGTA
66 AACACTGCAACCTCTAAAATAGCTAGCATGAGATCAAGCTCCCAACTGTGATCTTAAGGCTCGTA
** * * * *
22521894 GGTTCAACATCGTAGCCTCCAAAATAGTTAGCATGAGCTCGAGCTCCTAACTGTGATATTAAGGC
131 GGTTCAACATCACAGCCTCCAAAACAGTTAGCATGAGCTCAAACTCCCAACTGTGATATTAAGGC
*
22521959 TCGCAAGTTCACCAC
196 TCGCAAGTTCAACAC
* *
22521974 CGTAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAAGCTCACAGGTTC
1 CGCAACCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAAGCTCACAGGTTC
* * *
22522039 AACATTGTAGCCTCTAAAATAGCTAGCATGAGATCAAGCTCCCAACTGTGATCTTAAGGCTCGTA
66 AACACTGCAACCTCTAAAATAGCTAGCATGAGATCAAGCTCCCAACTGTGATCTTAAGGCTCGTA
* * * *
22522104 TGTTCAACATCACAGCCTCTAAAACAGTTAGCATGAGCTCAAACTCCCAATTGTGATCTTAAGGC
131 GGTTCAACATCACAGCCTCCAAAACAGTTAGCATGAGCTCAAACTCCCAACTGTGATATTAAGGC
* * * *
22522169 TTGCAGGTTTAACAT
196 TCGCAAGTTCAACAC
* * * ** * * ** *
22522184 CGCAACCTCCTAAACAATTAGCGAAAGCTCAAGCTCCCAGCTGTGATCTTAATGCTCGTAAGTTC
1 CGCAACCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAAGCTCACAGGTTC
** * * * ** * * * * **
22522249 AATGCTGC-ACCTCCAAAATAGTTAACGCGAGGTCAAACTCTCAACTGTGATCTTAAGGCCCACA
66 AACACTGCAACCTCTAAAATAGCTAGCATGAGATCAAGCTCCCAACTGTGATCTTAAGGCTCGTA
** ** * * * *
22522313 ATTTCAACA-CTGGAGCCTCCTAAACAGTTAGC-TAGAGCTTAAACTCCCAGCTGTGATCTTAAG
131 GGTTCAACATC-ACAGCCTCCAAAACAGTTAGCAT-GAGCTCAAACTCCCAACTGTGATATTAAG
22522376 GCTC
194 GCTC
22522380 ACAGGCTCAA
Statistics
Matches: 331, Mismatches: 73, Indels: 5
0.81 0.18 0.01
Matches are distributed among these distances:
208 2 0.01
209 97 0.29
210 232 0.70
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (210 bp):
CGCAACCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAACTGTGATCTTAAAGCTCACAGGTTC
AACACTGCAACCTCTAAAATAGCTAGCATGAGATCAAGCTCCCAACTGTGATCTTAAGGCTCGTA
GGTTCAACATCACAGCCTCCAAAACAGTTAGCATGAGCTCAAACTCCCAACTGTGATATTAAGGC
TCGCAAGTTCAACAC
Found at i:22525113 original size:8 final size:8
Alignment explanation
Indices: 22525102--22525126 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22525092 TTTTTCATAA
22525102 TTTCACTT
1 TTTCACTT
22525110 TTTCACTT
1 TTTCACTT
22525118 TTTCACTT
1 TTTCACTT
22525126 T
1 T
22525127 CAATCACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTCACTT
Found at i:22525214 original size:23 final size:22
Alignment explanation
Indices: 22525171--22525214 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
22525161 TTTCAAGTCA
22525171 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
22525194 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
22525215 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:22525445 original size:51 final size:51
Alignment explanation
Indices: 22525388--22525527 Score: 176
Period size: 50 Copynumber: 2.8 Consensus size: 51
22525378 TTGGTTCACA
*
22525388 TAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCCGATACAAG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACAAG
* * * * * *
22525439 TAGTAGCCTGCACATAGTACTACACATGCGATC-T-ATCTTTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CTATCCGATACAAG
* *
22525489 TAGTAGCCTGCACATACTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
22525528 TTCACTTTCA
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
49 1 0.01
50 40 0.53
51 33 0.44
52 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACAAG
Found at i:22529652 original size:39 final size:39
Alignment explanation
Indices: 22529603--22530094 Score: 696
Period size: 39 Copynumber: 12.6 Consensus size: 39
22529593 CATATTCACT
** *
22529603 TTTAAGCATATATCACTTTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
22529642 TTTAAACATATATCACAATACTTATATAATCACATAACG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
22529681 TTTAAGCATATTTCACAATACTCATATAATCACATAAAA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
22529720 TTTAAGCATATATAACAGTACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
22529759 TTTAAACAAATATCACAATACTCATATAATCACATAACG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
22529798 TTTAAGCATATTTCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
22529837 TTTAAGCATATATCACAGTACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * **
22529876 TTTAAGCATATATCATAGTACTCATATAATCACATAATG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
22529915 TTTAAGCATATATCACATTGCTCATATAATCACATAACG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
22529954 TTGAAGTATATATCACAATACTCATATAATCACATAACG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * **
22529993 CTTAAGCATATATCACAATACTCATATAATCACAAAATG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
22530032 TTTAAGCATATATCACAATACTCATATAATTACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
22530071 TTAAAACATATATCACAATACTCA
1 TTTAAGCATATATCACAATACTCA
22530095 AAAACATATT
Statistics
Matches: 404, Mismatches: 49, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 404 1.00
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:22533793 original size:39 final size:39
Alignment explanation
Indices: 22533750--22533832 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
22533740 CATATTCACT
* * *
22533750 TTTAAGCATGTATCACATTACAT-ATATAATTACATAACA
1 TTTAAGCATATATCACAATAC-TCATATAATCACATAACA
**
22533789 TTTAAGTGTATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
22533828 TTTAA
1 TTTAA
22533833 ACATTTATGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
38 1 0.03
39 37 0.97
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:22536374 original size:47 final size:47
Alignment explanation
Indices: 22536275--22536375 Score: 112
Period size: 47 Copynumber: 2.1 Consensus size: 47
22536265 TGTGAACTCA
* * *** ***
22536275 TCATCGAACATCATAAGAAAAGATTGTACTCTTCATAGGCATGTTTTT
1 TCATC-AACATCATAAGAAAAGATTGTACTCTTCATAAGAAAAATAAC
*
22536323 TCATCAACATCATAAGAAAAGATTGTACTCTTCATAATAAAAATAAC
1 TCATCAACATCATAAGAAAAGATTGTACTCTTCATAAGAAAAATAAC
22536370 TCATCA
1 TCATCA
22536376 TTGATGTACA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
47 39 0.89
48 5 0.11
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (47 bp):
TCATCAACATCATAAGAAAAGATTGTACTCTTCATAAGAAAAATAAC
Found at i:22539941 original size:126 final size:121
Alignment explanation
Indices: 22539760--22540018 Score: 374
Period size: 126 Copynumber: 2.1 Consensus size: 121
22539750 ACTAATTCCC
22539760 AACCTTTAATCTACAATATAATACTCAATTCATAGTATCAAATTTTTGACATGTTTTATAGCTAT
1 AACCTTTAATCTACAATATAATACTCAATTCATAGTATCAAATTTTTGACATGTTTTATAGCTAT
* * * * * * *
22539825 TTTTTGAAAATTCATTGAAACCTTAATAAATTTTTAACGAAAATTCAACGTAAGTTTAGA
66 TTTCTAAAAACTCATTAAAACCTAAAGAAATTTTTAACAAAAATTC-A---AAGTTTAGA
* * *
22539885 AACCTCTTAATCTACAATATAATACTCAATTCATAGTATCGACTTTTTGACATGTTTTATGGCTA
1 AACCT-TTAATCTACAATATAATACTCAATTCATAGTATCAAATTTTTGACATGTTTTATAGCTA
22539950 TTTTCTAAAAACTCATTAAAACCTAAAGAAATTTTTAACAAAAATTCAAAGTTTAGA
65 TTTTCTAAAAACTCATTAAAACCTAAAGAAATTTTTAACAAAAATTCAAAGTTTAGA
22540007 AACCTATTAATC
1 AACCT-TTAATC
22540019 ATGTGAAAAC
Statistics
Matches: 122, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
122 20 0.16
125 6 0.05
126 96 0.79
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (121 bp):
AACCTTTAATCTACAATATAATACTCAATTCATAGTATCAAATTTTTGACATGTTTTATAGCTAT
TTTCTAAAAACTCATTAAAACCTAAAGAAATTTTTAACAAAAATTCAAAGTTTAGA
Found at i:22545264 original size:18 final size:19
Alignment explanation
Indices: 22545218--22545264 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
22545208 GTTCCCTAAG
*
22545218 TTAATTCAATTTATTCAAT
1 TTAATTCAATTAATTCAAT
* *
22545237 TTAAAT-AATTAATTTAAT
1 TTAATTCAATTAATTCAAT
22545255 TT-ATTCAATT
1 TTAATTCAATT
22545265 TTCAAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 2 0.09
18 16 0.70
19 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATTCAATTAATTCAAT
Found at i:22548948 original size:28 final size:28
Alignment explanation
Indices: 22548917--22549046 Score: 113
Period size: 28 Copynumber: 4.7 Consensus size: 28
22548907 AGGGCATCCC
22548917 TTTCA-AATATCGCCACAAAGGCTGA-TCT
1 TTTCATAAT-TCGCCACAAAGGCT-ATTCT
* *
22548945 TTTCATACTTTGCCACAAAGGCTATTCT
1 TTTCATAATTCGCCACAAAGGCTATTCT
* ** * *
22548973 TTTCATACTTTTCCACAAAGGTTATTAT
1 TTTCATAATTCGCCACAAAGGCTATTCT
* * *
22549001 TTTCATACTCCGCCACAAAGGCT-TTCA
1 TTTCATAATTCGCCACAAAGGCTATTCT
* *
22549028 TTTCATGATTTGCCACAAA
1 TTTCATAATTCGCCACAAA
22549047 AGCATCATTT
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
27 18 0.21
28 65 0.76
29 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (28 bp):
TTTCATAATTCGCCACAAAGGCTATTCT
Found at i:22551505 original size:25 final size:24
Alignment explanation
Indices: 22551479--22551570 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 24
22551469 TTCGACCCAT
*
22551479 AGCTCATGTGAGCATATCGATTTAT
1 AGCTCATGTGAGCATA-CGATTTAC
* * *
22551504 AGCTCGTGAGAGCATACTGATATAC
1 AGCTCATGTGAGCATAC-GATTTAC
* * *
22551529 AACTCAAGTGAGCATACCGATTCAC
1 AGCTCATGTGAGCATA-CGATTTAC
*
22551554 AGCTCATATGAGCATAC
1 AGCTCATGTGAGCATAC
22551571 ATGTACATGA
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
24 2 0.04
25 49 0.94
26 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AGCTCATGTGAGCATACGATTTAC
Found at i:22553458 original size:42 final size:43
Alignment explanation
Indices: 22553355--22553460 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 43
22553345 GGCTGAAAGC
*
22553355 GCACTTTGTAGAACACATTTTCACTGACACGAGAGTAACAACAT
1 GCAC-TTGTAGAACACATTTTCACTGACACGAGACTAACAACAT
* ** * **
22553399 GCAC-TGTAGGATGCATTTTCACTGACACGATACTGAA-AATGT
1 GCACTTGTAGAACACATTTTCACTGACACGAGACT-AACAACAT
22553441 GC-CTTGTAGAACACATTTTC
1 GCACTTGTAGAACACATTTTC
22553461 CTTTCTCTCT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.02
42 43 0.86
43 2 0.04
44 4 0.08
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (43 bp):
GCACTTGTAGAACACATTTTCACTGACACGAGACTAACAACAT
Found at i:22559537 original size:20 final size:20
Alignment explanation
Indices: 22559504--22559542 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22559494 AATAATTGCT
22559504 TGATGATTATATTTGAATGA
1 TGATGATTATATTTGAATGA
*
22559524 TGATAGATTA-ATTTTAATG
1 TGAT-GATTATATTTGAATG
22559543 TTATAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
TGATGATTATATTTGAATGA
Found at i:22567561 original size:39 final size:36
Alignment explanation
Indices: 22567512--22567617 Score: 108
Period size: 39 Copynumber: 2.8 Consensus size: 36
22567502 TCTTTTCTTG
*
22567512 CTCACACTCTTTTTCTTTTTCAATCTCATTTTGCTTTCT
1 CTCACTCTCTTTTTCTTTTTCAAT-TCATTTT--TTTCT
* *
22567551 CTCACTCTCTTTTTCTTTTTAAATT--TATTTTTCT
1 CTCACTCTCTTTTTCTTTTTCAATTCATTTTTTTCT
*
22567585 CTCATCTCTCTTTTTCTTCTCTCAATTTCATTT
1 CTCA-CTCTCTTTTTCTT-TTTCAA-TTCATTT
22567618 AGGATTCACT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
34 9 0.16
35 13 0.23
36 7 0.12
37 2 0.04
38 1 0.02
39 24 0.43
ACGTcount: A:0.13, C:0.26, G:0.01, T:0.59
Consensus pattern (36 bp):
CTCACTCTCTTTTTCTTTTTCAATTCATTTTTTTCT
Found at i:22573653 original size:15 final size:16
Alignment explanation
Indices: 22573623--22573653 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22573613 AAGTGACAAG
22573623 AAACAAATCGTGCAGT
1 AAACAAATCGTGCAGT
22573639 AAACAAATC-TGCAGT
1 AAACAAATCGTGCAGT
22573654 TAATAGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.19
Consensus pattern (16 bp):
AAACAAATCGTGCAGT
Found at i:22575984 original size:19 final size:19
Alignment explanation
Indices: 22575960--22575998 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
22575950 CTTGTGTGAT
22575960 AGGTGATAGAGATAGACCC
1 AGGTGATAGAGATAGACCC
*
22575979 AGGTGATAGAGGTAGACCC
1 AGGTGATAGAGATAGACCC
22575998 A
1 A
22575999 TTACAGAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.15, G:0.33, T:0.15
Consensus pattern (19 bp):
AGGTGATAGAGATAGACCC
Found at i:22592917 original size:25 final size:25
Alignment explanation
Indices: 22592869--22592939 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
22592859 CCAGTAAGTT
* * *
22592869 TCCTGAAACTATTTTTGATGGTATA
1 TCCTGAAACTATTATAGATAGTATA
*
22592894 TCCTGAAACTATTATAGGTAGTATA
1 TCCTGAAACTATTATAGATAGTATA
* * *
22592919 TACTGAGACTACTATAGATAG
1 TCCTGAAACTATTATAGATAG
22592940 ACTGTACTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.37
Consensus pattern (25 bp):
TCCTGAAACTATTATAGATAGTATA
Found at i:22599002 original size:17 final size:18
Alignment explanation
Indices: 22598975--22599015 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
22598965 AAGGCCATTT
22598975 TGGGTCGTGTGGG-CCACA
1 TGGG-CGTGTGGGCCCACA
22598993 TGGGCGTGTGGGCCCACA
1 TGGGCGTGTGGGCCCACA
22599011 TGGGC
1 TGGGC
22599016 ATGCAACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.10, C:0.24, G:0.46, T:0.20
Consensus pattern (18 bp):
TGGGCGTGTGGGCCCACA
Found at i:22601551 original size:14 final size:14
Alignment explanation
Indices: 22601532--22601558 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22601522 GCTACCATTT
22601532 TACTATTTTGTTGC
1 TACTATTTTGTTGC
22601546 TACTATTTTGTTG
1 TACTATTTTGTTG
22601559 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.59
Consensus pattern (14 bp):
TACTATTTTGTTGC
Found at i:22602143 original size:31 final size:31
Alignment explanation
Indices: 22602086--22602156 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
22602076 AAGTCCACTC
* *
22602086 ATTTTT-TTTAATTTTTAAATATATTTATATT
1 ATTTTTATTTAATATTTAAATAAATTTATA-T
22602117 ATTTTTATTTAATATTT-AATAAATTTATAT
1 ATTTTTATTTAATATTTAAATAAATTTATAT
22602147 A-TTTTATTTA
1 ATTTTTATTTA
22602157 TTAAAATGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 9 0.24
30 2 0.05
31 17 0.46
32 9 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (31 bp):
ATTTTTATTTAATATTTAAATAAATTTATAT
Found at i:22602154 original size:35 final size:31
Alignment explanation
Indices: 22602086--22602155 Score: 77
Period size: 35 Copynumber: 2.1 Consensus size: 31
22602076 AAGTCCACTC
*
22602086 ATTTTTTTTAATTTTTAAATATATTTATATT
1 ATTTTTTTTAATTTTTAAATATATATATATT
* *
22602117 ATTTTTATTTAATATTTAATAAATTTATATATTTT
1 ATTTTT-TTTAAT-TTT--TAAATATATATATATT
22602152 ATTT
1 ATTT
22602156 ATTAAAATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 6 0.19
32 6 0.19
33 3 0.09
35 17 0.53
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (31 bp):
ATTTTTTTTAATTTTTAAATATATATATATT
Found at i:22603061 original size:87 final size:88
Alignment explanation
Indices: 22602902--22603153 Score: 265
Period size: 88 Copynumber: 2.8 Consensus size: 88
22602892 TTTAGAGTTG
* *
22602902 AAATGGTAATTTTTCTTTTCACCTTTATACTTAAAATCAGTATTTTTTTTTTCAATTGAACGCTG
1 AAATGGTAATTTTCCTTTTCACCTTTATAATTAAAATCAGTATTTTTTTTTTCAATTGAACGCTG
22602967 AACTTGTACTTAATTTGAAATTC
66 AACTTGTACTTAATTTGAAATTC
* * * * *
22602990 AAATGGTTATTTTCCTTTTCACCTTTATAATTGAAATTAGT-TTTTTTTTTTCAGTTGAAC-TTC
1 AAATGGTAATTTTCCTTTTCACCTTTATAATTAAAATCAGTATTTTTTTTTTCAATTGAACGCT-
* *
22603053 GAACTTGTACTTAATTTGGAGTTGAAAATG
65 GAACTTGTACTTAA--T----TTGAAATTC
* * * *
22603083 AAATGGTAATTTTCCTTTTTCACCTTTACACTTGAAATCAATACATATTTTTTTTTCAATTGAAC
1 AAATGGTAATTTTCC-TTTTCACCTTTATAATTAAAATCAGT--AT-TTTTTTTTTCAATTGAAC
*
22603148 TCTGAA
62 GCTGAA
22603154 TTTAAATTTA
Statistics
Matches: 135, Mismatches: 16, Indels: 16
0.81 0.10 0.10
Matches are distributed among these distances:
86 1 0.01
87 32 0.24
88 36 0.27
89 1 0.01
93 21 0.16
94 22 0.16
97 1 0.01
98 20 0.15
99 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.47
Consensus pattern (88 bp):
AAATGGTAATTTTCCTTTTCACCTTTATAATTAAAATCAGTATTTTTTTTTTCAATTGAACGCTG
AACTTGTACTTAATTTGAAATTC
Found at i:22603804 original size:41 final size:41
Alignment explanation
Indices: 22603718--22603879 Score: 218
Period size: 41 Copynumber: 4.0 Consensus size: 41
22603708 AGCACCGCAA
* * *
22603718 GCGCCGCTAATGCTCTGGGCTTTAGCGGC-TTTTTTAAAAG
1 GCGCCGCTAATACTCTGGGCTTTAGCGGCGTTTTTGAAAAT
* * **
22603758 GCGCCGCTAATGCTCTAGTATTTAGCGGCGTTTTTGAAAAT
1 GCGCCGCTAATACTCTGGGCTTTAGCGGCGTTTTTGAAAAT
*
22603799 GCGCCGCTAGTACTCTGGGCTTTAGCGGCGTTTTTGAAAAT
1 GCGCCGCTAATACTCTGGGCTTTAGCGGCGTTTTTGAAAAT
* * *
22603840 GCGCCGCTAATACTCTGGGCTTTAGAGACATTTTTGAAAA
1 GCGCCGCTAATACTCTGGGCTTTAGCGGCGTTTTTGAAAA
22603880 GTGCTGCTAA
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 26 0.24
41 81 0.76
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (41 bp):
GCGCCGCTAATACTCTGGGCTTTAGCGGCGTTTTTGAAAAT
Found at i:22604288 original size:14 final size:14
Alignment explanation
Indices: 22604269--22604388 Score: 75
Period size: 14 Copynumber: 8.4 Consensus size: 14
22604259 TATCACTATA
*
22604269 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
22604283 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* *
22604297 GTTTAGAGTTTAAG
1 GTTTAGGGTTTATG
*
22604311 GTTTAGGTGTTACCAT-
1 GTTTAGG-GTT--TATG
*
22604327 -TTTAAGGTTTATG
1 GTTTAGGGTTTATG
* *
22604340 GATTATGGGATTATGG
1 GTTTA-GGGTTTAT-G
22604356 GTTTATGGG-TTATG
1 GTTTA-GGGTTTATG
* *
22604370 ATTTATGGTTTATG
1 GTTTAGGGTTTATG
22604384 GTTTA
1 GTTTA
22604389 AAGACTAGGA
Statistics
Matches: 81, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
12 2 0.02
13 2 0.02
14 49 0.60
15 18 0.22
16 9 0.11
17 1 0.01
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:22604385 original size:7 final size:7
Alignment explanation
Indices: 22604269--22604388 Score: 64
Period size: 7 Copynumber: 16.7 Consensus size: 7
22604259 TATCACTATA
*
22604269 GTTTAGG
1 GTTTATG
*
22604276 GTTTTTG
1 GTTTATG
*
22604283 GTTTAGG
1 GTTTATG
*
22604290 GTATATG
1 GTTTATG
22604297 GTTTA-G
1 GTTTATG
*
22604303 AGTTTAAG
1 -GTTTATG
22604311 GTTTA-G
1 GTTTATG
**
22604317 GTGTTACCA
1 GT-TTA-TG
* *
22604326 TTTTAAG
1 GTTTATG
22604333 GTTTATG
1 GTTTATG
*
22604340 GATTATGG
1 GTTTAT-G
*
22604348 GATTATGG
1 GTTTAT-G
22604356 GTTTATG
1 GTTTATG
*
22604363 GGTTATG
1 GTTTATG
*
22604370 ATTTATG
1 GTTTATG
22604377 GTTTATG
1 GTTTATG
22604384 GTTTA
1 GTTTA
22604389 AAGACTAGGA
Statistics
Matches: 88, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
6 4 0.05
7 65 0.74
8 18 0.20
9 1 0.01
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (7 bp):
GTTTATG
Found at i:22604560 original size:7 final size:7
Alignment explanation
Indices: 22604552--22604589 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
22604542 TAAGGTTTAT
22604552 GGATTATG
1 GGATTA-G
*
22604560 GGTTTAG
1 GGATTAG
22604567 GGATTAG
1 GGATTAG
22604574 GGATTAG
1 GGATTAG
22604581 GGATTAG
1 GGATTAG
22604588 GG
1 GG
22604590 GTTAAGGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 23 0.82
8 5 0.18
ACGTcount: A:0.24, C:0.00, G:0.45, T:0.32
Consensus pattern (7 bp):
GGATTAG
Found at i:22604563 original size:15 final size:14
Alignment explanation
Indices: 22604540--22604589 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
22604530 GAGTTACTAT
* *
22604540 ATTAAGGTTTATGG
1 ATTAGGGTTTAGGG
22604554 ATTATGGGTTTAGGG
1 ATTA-GGGTTTAGGG
*
22604569 ATTAGGGATTAGGG
1 ATTAGGGTTTAGGG
22604583 ATTAGGG
1 ATTAGGG
22604590 GTTAAGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.36
Consensus pattern (14 bp):
ATTAGGGTTTAGGG
Found at i:22621736 original size:26 final size:26
Alignment explanation
Indices: 22621700--22621756 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
22621690 AATTAAGATT
22621700 AACATCATTACAGGTAAGATAAAACC
1 AACATCATTACAGGTAAGATAAAACC
22621726 AACATCATTACAGGTAAGATAAAACC
1 AACATCATTACAGGTAAGATAAAACC
22621752 AACAT
1 AACAT
22621757 TTTTCCGGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.51, C:0.19, G:0.11, T:0.19
Consensus pattern (26 bp):
AACATCATTACAGGTAAGATAAAACC
Found at i:22622253 original size:24 final size:22
Alignment explanation
Indices: 22622222--22622341 Score: 89
Period size: 22 Copynumber: 5.2 Consensus size: 22
22622212 AAAATAATCA
*
22622222 AAAAAAATTTTGAATTACAGGGAC
1 AAAAAAA--TTGAATTATAGGGAC
* *
22622246 AAAAAAATTGATTTATAGGGAT
1 AAAAAAATTGAATTATAGGGAC
* **
22622268 AAACAAATCAAATTATAGGGAC
1 AAAAAAATTGAATTATAGGGAC
* * *
22622290 AAAAAAACGTTAAATTACAAGGAC
1 AAAAAAA--TTGAATTATAGGGAC
*
22622314 ATAAAAAGGTTGAATTATAGGGA-
1 A-AAAAA-ATTGAATTATAGGGAC
22622337 AAAAA
1 AAAAA
22622342 TCGACTTACA
Statistics
Matches: 76, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
22 39 0.51
23 1 0.01
24 31 0.41
25 5 0.07
ACGTcount: A:0.54, C:0.07, G:0.17, T:0.23
Consensus pattern (22 bp):
AAAAAAATTGAATTATAGGGAC
Found at i:22622256 original size:22 final size:22
Alignment explanation
Indices: 22622222--22622452 Score: 84
Period size: 22 Copynumber: 10.4 Consensus size: 22
22622212 AAAATAATCA
22622222 AAAAAAATTTTGAATTACAGGGAC
1 AAAAAAA--TTGAATTACAGGGAC
* * *
22622246 AAAAAAATTGATTTATAGGGAT
1 AAAAAAATTGAATTACAGGGAC
* ** *
22622268 AAACAAATCAAATTATAGGGAC
1 AAAAAAATTGAATTACAGGGAC
* *
22622290 AAAAAAACGTTAAATTACAAGGAC
1 AAAAAAA--TTGAATTACAGGGAC
* *
22622314 ATAAAAAGGTTGAATTATAGGG--
1 A-AAAAA-ATTGAATTACAGGGAC
* *
22622336 -AAAAAATCGACTTACA-GGA-
1 AAAAAAATTGAATTACAGGGAC
* *
22622355 AAAAAAA--GAACTAC-GCGAAC
1 AAAAAAATTGAATTACAG-GGAC
** *
22622375 TAAAAATTTTGAATTATAGGGAC
1 -AAAAAAATTGAATTACAGGGAC
* * *
22622398 -AAAAAGTTCAATTTACAGTGAC
1 AAAAAAATTGAA-TTACAGGGAC
* * *
22622420 AAAAAAAAGTCGAATTACAAGGAG
1 -AAAAAAA-TTGAATTACAGGGAC
22622444 AAAAAAATT
1 AAAAAAATT
22622453 TTGACTTATA
Statistics
Matches: 150, Mismatches: 40, Indels: 36
0.66 0.18 0.16
Matches are distributed among these distances:
18 7 0.05
19 9 0.06
20 11 0.07
21 13 0.09
22 44 0.29
23 15 0.10
24 43 0.29
25 8 0.05
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.22
Consensus pattern (22 bp):
AAAAAAATTGAATTACAGGGAC
Found at i:22622485 original size:70 final size:71
Alignment explanation
Indices: 22622376--22622513 Score: 156
Period size: 70 Copynumber: 2.0 Consensus size: 71
22622366 TACGCGAACT
** ** * *
22622376 AAAAATTTTGAATTATAGGGACAAAAAGTTCAATTTACAGTG-ACAAAAAA-AAGTCGAATTACA
1 AAAAATTTTGAATTATAGGGACAAAAAGAACAAACTACAG-GAACAAAAAAGAAATAGAATTACA
22622439 AGGAGAA
65 AGGAGAA
* * *
22622446 AAAAATTTTGACTTATAGGGAGAACAAA-AACAAACTACAGGAACAAAAAAGAAATAGAATTATA
1 AAAAATTTTGAATTATAGGGACAA-AAAGAACAAACTACAGGAACAAAAAAGAAATAGAATTACA
22622510 AGGA
65 AGGA
22622514 TCGAAAATTC
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
69 1 0.02
70 38 0.68
71 17 0.30
ACGTcount: A:0.54, C:0.09, G:0.17, T:0.20
Consensus pattern (71 bp):
AAAAATTTTGAATTATAGGGACAAAAAGAACAAACTACAGGAACAAAAAAGAAATAGAATTACAA
GGAGAA
Found at i:22625419 original size:31 final size:29
Alignment explanation
Indices: 22625376--22625443 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
22625366 TTTTATAAAT
* *
22625376 AATTAATATTTAT-TAATTAAAAATATTTAC
1 AATTTATATTTATAT-ATT-AAAATATTAAC
22625406 AATTTATATTTTATATATTAAAATATTAAC
1 AATTTATA-TTTATATATTAAAATATTAAC
*
22625436 AAGTTATA
1 AATTTATA
22625444 ATAATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 24 0.73
31 8 0.24
32 1 0.03
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (29 bp):
AATTTATATTTATATATTAAAATATTAAC
Found at i:22631758 original size:62 final size:59
Alignment explanation
Indices: 22631638--22631762 Score: 135
Period size: 62 Copynumber: 2.1 Consensus size: 59
22631628 ATATTTGTAC
* * * ****
22631638 AAATTGTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTGAATATTTTAATAG
1 AAATTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTAAATAAGGCAATAG
*
22631697 TAAATTATTTTTATATT-TTGTCCTATTTAATAAAATAGAAGTTCTTTTAAATAAGGCAATAG
1 -AAATTATTTTTATATTGTT-T-C-ATTTAATAAAATAAAAGTTCTTTTAAATAAGGCAATAG
22631759 AAAT
1 AAAT
22631763 AATGCAATAG
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 2 0.04
60 16 0.30
61 5 0.09
62 31 0.57
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (59 bp):
AAATTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTAAATAAGGCAATAG
Found at i:22631764 original size:14 final size:14
Alignment explanation
Indices: 22631745--22631783 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
22631735 AAGTTCTTTT
*
22631745 AAATAAGGCAATAG
1 AAATAATGCAATAG
22631759 AAATAATGCAATAG
1 AAATAATGCAATAG
22631773 AAATAATGCAA
1 AAATAATGCAA
22631784 CATAATTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.59, C:0.08, G:0.15, T:0.18
Consensus pattern (14 bp):
AAATAATGCAATAG
Found at i:22635047 original size:127 final size:125
Alignment explanation
Indices: 22634791--22635184 Score: 512
Period size: 126 Copynumber: 3.1 Consensus size: 125
22634781 GCCAAACAGG
** *
22634791 AACTACTGTA-AAAAAAA--GTCCACGT-GAGAGCTTTTTTCAGTAATTTTTTTGGCAGTGCATC
1 AACTACTGTAGAAAAAAAGCGTCCACGTAG-GAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * **
22634852 CTGCTTGACGCGTTTTTGACATAATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGG
65 CTGCTTGAAGCGTTTTTGACAT-ATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAA
* *
22634914 AACTACTGTAGAAAAAAAGCGTCCACATAGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCC
1 AACTACTGTAGAAAAAAAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
*
22634979 TGCTTGAAGCGTTTTTGAAACTATTTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAA
66 TGCTTGAAGCGTTTTTGACA-TA-TTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAA
*
22635041 AACTACTGTAGAAAAAGAGCGTCCACGTAGGAG-TCTTTTT-AGTAATTTTGCTGACAGTGCATC
1 AACTACTGTAGAAAAAAAGCGTCCACGTAGGAGCT-TTTTTCAGTAATTTTGCTGACAGTGCATC
* * * * ** *
22635104 ATGTTTGAAGTGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTAACTTTTCTAA
65 CTGCTTGAAGCGTTTTTGACA-TATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAA
*
22635166 AACTATTGTAGAAAGAAAA
1 AACTACTGTAGAAA-AAAA
22635185 ACAAAATTCT
Statistics
Matches: 239, Mismatches: 24, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
123 10 0.04
124 7 0.03
125 47 0.20
126 102 0.43
127 73 0.31
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (125 bp):
AACTACTGTAGAAAAAAAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACATATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAA
Found at i:22635284 original size:34 final size:33
Alignment explanation
Indices: 22635243--22635362 Score: 132
Period size: 34 Copynumber: 3.6 Consensus size: 33
22635233 CACAAAATTA
*
22635243 TTTTTAAAAAAACTAAACCCTAATTTAATTAAT
1 TTTTTAAAAACACTAAACCCTAATTTAATTAAT
* *
22635276 TTTCTTAAAAACTCTAAACCTTAATTTAATTAAT
1 TTT-TTAAAAACACTAAACCCTAATTTAATTAAT
* * * *
22635310 TTATTTAAAACCCCTAAAACCTAATTGAATTAAT
1 TT-TTTAAAAACACTAAACCCTAATTTAATTAAT
* **
22635344 TTTTTTAAAATTCTAAACC
1 TTTTTAAAAACACTAAACC
22635363 TTGATTTATT
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
33 15 0.21
34 56 0.78
35 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (33 bp):
TTTTTAAAAACACTAAACCCTAATTTAATTAAT
Found at i:22635317 original size:68 final size:67
Alignment explanation
Indices: 22635245--22635370 Score: 171
Period size: 68 Copynumber: 1.9 Consensus size: 67
22635235 CAAAATTATT
* *
22635245 TTTAAAAAAACTAAACCCTAATTTAATTAATTTTCTTAAAAACTCTAAACCTTAATTTAATTAAT
1 TTTAAAAAAACTAAAACCTAATTGAATTAATTTT-TTAAAAACTCTAAACCTTAATTTAATTAAT
22635310 TTA
65 TTA
*** * * *
22635313 TTTAAAACCCCTAAAACCTAATTGAATTAATTTTTTTAAAATTCTAAACCTTGATTTA
1 TTTAAAAAAACTAAAACCTAATTGAATTAATTTTTTAAAAACTCTAAACCTTAATTTA
22635371 TTTTTTAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
67 21 0.42
68 29 0.58
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (67 bp):
TTTAAAAAAACTAAAACCTAATTGAATTAATTTTTTAAAAACTCTAAACCTTAATTTAATTAATT
TA
Found at i:22636591 original size:20 final size:20
Alignment explanation
Indices: 22636566--22636608 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
22636556 TTTTTTGGTA
22636566 AAATAACAAAATATAGTAAT
1 AAATAACAAAATATAGTAAT
*
22636586 AAATAACAAAATATGGTAAT
1 AAATAACAAAATATAGTAAT
22636606 AAA
1 AAA
22636609 ACATCATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (20 bp):
AAATAACAAAATATAGTAAT
Found at i:22639790 original size:268 final size:265
Alignment explanation
Indices: 22639296--22639800 Score: 708
Period size: 268 Copynumber: 1.9 Consensus size: 265
22639286 TAAACTTGCT
* * *
22639296 TAATAAAAGTACTTGTATATCATTTTAGTCATTTTATTTTATGTTAATAATATATATGCATATAT
1 TAATAAAAGTACTTGTACATCATTTTAGTCATTTTATTTTATGTTAATAATATATATGAATAAAT
* * * * *
22639361 ATACTACTTCGCTAATGGATAGGTTATGAGTGAAGGTTTTGGAAATGTGACCAAATTGAGTAACC
66 ATACTACTCCACTAATGAATAGGTTATGAGTGAAGATTTTGGAAATGTGACCAAATTAAGTAACC
* *
22639426 GAGATAAGGTGCTTGAGTTGTCATCTCACCTCGCGTAAAAAGATTCAAGTGACGAACCAAAACCT
131 GAGATAAGGTGCTTGAGTTGTCATCTCACCTCGCATAAAAAGATCCAAGTGACGAACCAAAACCT
* * * * *
22639491 GTAAACACTCTGCTAGCCGAGTTTCCATGAGTAGGGGAAAAATAATTCGTTTAGAGACGTATCAA
196 GCAAACACTCTGCTAACCAAGTGTCCATGAGTA-AGGAAAAATAATTCGTTTAGAGACGTATCAA
22639556 ATCGAG
260 ATCGAG
* *
22639562 TAATAAAAGTACTTGTACCTCGTTTTAGTCATTTTATTTTATGTTAATAATATATATAAGAATAA
1 TAATAAAAGTACTTGTACATCATTTTAGTCATTTTATTTTATGTTAATAATATATAT--GAATAA
* * *
22639627 ATATACTACTCCATTGATGAATAGGTTATGAGTGAAGATTTTGGAAATGTGAGCAAATTAAGTAA
64 ATATACTACTCCACTAATGAATAGGTTATGAGTGAAGATTTTGGAAATGTGACCAAATTAAGTAA
* * * *
22639692 CCGAGATAAGGTTCTTGGGTTGTTC-TCTCACCTCGCATAAAAAGATCCGAGTGACGAACCGAAA
129 CCGAGATAAGGTGCTTGAGTTG-TCATCTCACCTCGCATAAAAAGATCCAAGTGACGAACCAAAA
* * *
22639756 CTTGCAAACACTCTGGTAATCAAGCTGT-CATGAGTAAGGAAAAAT
193 CCTGCAAACACTCTGCTAACCAAG-TGTCCATGAGTAAGGAAAAAT
22639801 TGAGTAACCT
Statistics
Matches: 208, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
266 54 0.26
267 8 0.04
268 142 0.68
269 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (265 bp):
TAATAAAAGTACTTGTACATCATTTTAGTCATTTTATTTTATGTTAATAATATATATGAATAAAT
ATACTACTCCACTAATGAATAGGTTATGAGTGAAGATTTTGGAAATGTGACCAAATTAAGTAACC
GAGATAAGGTGCTTGAGTTGTCATCTCACCTCGCATAAAAAGATCCAAGTGACGAACCAAAACCT
GCAAACACTCTGCTAACCAAGTGTCCATGAGTAAGGAAAAATAATTCGTTTAGAGACGTATCAAA
TCGAG
Found at i:22649599 original size:7 final size:7
Alignment explanation
Indices: 22649589--22649633 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
22649579 GTTTTTGGGT
*
22649589 TTTATGG
1 TTTAGGG
22649596 TTTAGGG
1 TTTAGGG
22649603 TTTAGGG
1 TTTAGGG
*
22649610 TTTTAGAG
1 -TTTAGGG
*
22649618 TTTGGGG
1 TTTAGGG
22649625 TTTAGGG
1 TTTAGGG
22649632 TT
1 TT
22649634 AAAAATTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.13, C:0.00, G:0.38, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:22649610 original size:22 final size:22
Alignment explanation
Indices: 22649585--22649633 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
22649575 GCTTGTTTTT
22649585 GGGTTTTATG-GTTTAGGGTTTA
1 GGGTTTTA-GAGTTTAGGGTTTA
*
22649607 GGGTTTTAGAGTTTGGGGTTTA
1 GGGTTTTAGAGTTTAGGGTTTA
22649629 GGGTT
1 GGGTT
22649634 AAAAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.12, C:0.00, G:0.41, T:0.47
Consensus pattern (22 bp):
GGGTTTTAGAGTTTAGGGTTTA
Found at i:22650719 original size:225 final size:226
Alignment explanation
Indices: 22650026--22650803 Score: 1206
Period size: 225 Copynumber: 3.4 Consensus size: 226
22650016 GAACACCTCT
* *
22650026 AGTTTAGGGTTTTTCAATTAAATTATTTAAAAAAATTTCAAAATTGGATTAGTTTTCGTGTTTAT
1 AGTTTAGGGTTTGTCAATTAAATTATTTAAAAAAAATTCAAAATTGGATTAGTTTTCGTGTTTAT
* *
22650091 TATTTTTTAAGAAAAAATCAATTAAATTATGGTTTAGGGTTACTTGAGTAATTTAATT-TAAAAA
66 TATTTTTTAAGAAAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAAAA
* ***
22650155 ATTTTAAAGATTAGATTAGGGTTAGGGTTTTTGTTAGGGTTTTGGTGTTTTTAAGTTAAGGGTTT
131 ATTTTAAAAATTAGATTAGGGTTAGGGTTAGGGTTAGGGTTTTGGTGTTTTTAAGTTAAGGGTTT
* * * *
22650220 TCATGGAAAAATTAAATAAGTTAGGGTTTAA
196 TTAAGGAAAAATCAAATAAGTTAGGGTTTAG
* * *
22650251 AGTTTAGGGTTTGTCAATTAAATTATTT-TAAAAAATTTAAAATTGGATTAGTTTTCATGTTTAT
1 AGTTTAGGGTTTGTCAATTAAATTATTTAAAAAAAATTCAAAATTGGATTAGTTTTCGTGTTTAT
*
22650315 TATTTTTTAAGAAAAAAATCAATTAAATTAGGATTTAGGGTTACTTGAGTAATTTAATTAAAAAA
66 TATTTTTTAAG-AAAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAAA
* * *
22650380 AA--TTAAAAATTAGATTAGGGTTAGGGTTAGTGTTTTTTAGGGTTTTTGTGTTTTTAAGTTAAT
130 AATTTTAAAAATTAGATTAGGGTTAGGGTTAG-G---GTTAGGGTTTTGGTGTTTTTAAGTTAAG
22650443 GGTTTTTAAGGAAAAATCAAATAAGTTAGGGTTTAG
191 GGTTTTTAAGGAAAAATCAAATAAGTTAGGGTTTAG
*
22650479 AGTTTAGGGTTTGTCAATTAAATTATTTAAAAAAAATTCAAAATTGGATTAGTTTTTGTGTTTAT
1 AGTTTAGGGTTTGTCAATTAAATTATTTAAAAAAAATTCAAAATTGGATTAGTTTTCGTGTTTAT
* *
22650544 TA-TTTTTAAGAAAAAATTAATTAAATTGGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAAAA
66 TATTTTTTAAGAAAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAAAA
*
22650608 ATTTTAAAAATTAGATTAGGGTTAGGGTTAGGGTTAGAGTTTTGGTGTTTTTAAGTTAAGGGTTT
131 ATTTTAAAAATTAGATTAGGGTTAGGGTTAGGGTTAGGGTTTTGGTGTTTTTAAGTTAAGGGTTT
22650673 TTAAGGAAAAATCAAATAAGTTAGGGTTTAG
196 TTAAGGAAAAATCAAATAAGTTAGGGTTTAG
**** *
22650704 AGTTTAGGGTTTGTCAATTAAATTATTTAAAATTTTTTTAAAATTGGATTAGTTTTCGTGTTTAT
1 AGTTTAGGGTTTGTCAATTAAATTATTTAAAAAAAATTCAAAATTGGATTAGTTTTCGTGTTTAT
* *
22650769 TATTTTTTAAGAAAATATGAATTAAATTAGGGTTT
66 TATTTTTTAAGAAAAAATCAATTAAATTAGGGTTT
22650804 TGGTGTTTTT
Statistics
Matches: 504, Mismatches: 39, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
224 68 0.13
225 193 0.38
226 35 0.07
227 52 0.10
228 94 0.19
229 62 0.12
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (226 bp):
AGTTTAGGGTTTGTCAATTAAATTATTTAAAAAAAATTCAAAATTGGATTAGTTTTCGTGTTTAT
TATTTTTTAAGAAAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAAAA
ATTTTAAAAATTAGATTAGGGTTAGGGTTAGGGTTAGGGTTTTGGTGTTTTTAAGTTAAGGGTTT
TTAAGGAAAAATCAAATAAGTTAGGGTTTAG
Found at i:22655882 original size:21 final size:21
Alignment explanation
Indices: 22655849--22655905 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
22655839 CAGCTTCTGA
* *
22655849 CGGGGGTTATGGTTGCTCCGG
1 CGGGGATTCTGGTTGCTCCGG
* *
22655870 CGGGGATTCTGGTTCCTCTGG
1 CGGGGATTCTGGTTGCTCCGG
22655891 CAGGGGA-TCTGGTTG
1 C-GGGGATTCTGGTTG
22655906 TCGATGTTGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.07, C:0.19, G:0.44, T:0.30
Consensus pattern (21 bp):
CGGGGATTCTGGTTGCTCCGG
Found at i:22658143 original size:50 final size:50
Alignment explanation
Indices: 22658068--22658305 Score: 297
Period size: 50 Copynumber: 4.8 Consensus size: 50
22658058 ATTTGGGTAA
**
22658068 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
22658118 AGAGGTCCCATGTAAGACCATGTCTGTGACATGGCATTGGCATCGAGAT-
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
22658167 -GA---CCCATGTAAGACCATGTCTGGGACATTGCATTGGCACCGAAAGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * *
22658213 AGATGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
22658263 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
22658306 TGTTATTATC
Statistics
Matches: 161, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
45 38 0.24
47 2 0.01
48 2 0.01
50 85 0.53
51 34 0.21
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:22658183 original size:95 final size:97
Alignment explanation
Indices: 22658073--22658305 Score: 292
Period size: 95 Copynumber: 2.4 Consensus size: 97
22658063 GGTAAAGAGG
* * *
22658073 TCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGT-TTGGCACCGAAAGGAGAGGTCCCACGTAAGACCA
* * *
22658138 TGTCTGTGACATGGCATTGGCATCGAGAT-G-A
65 TGTCTGGGACATGGCATGGGCACCGAGATAGAA
** * *
22658169 -CCCATGTAAGACCATGTCTGGGACATTGCATTGGCACCGAAAGGAGATGTCCCCCGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACA-TGGTTTGGCACCGAAAGGAGAGGTCCCACGTAAGACCA
*
22658233 TGTCTGGGACATGGCATGGGCACCGATATGAGAACA
65 TGTCTGGGACATGGCATGGGCACCGAGAT-AG-A-A
22658269 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGG-TTTGGCA
22658306 TGTTATTATC
Statistics
Matches: 116, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
95 79 0.68
96 2 0.02
97 1 0.01
100 3 0.03
101 31 0.27
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (97 bp):
TCCCATGTAAGACCATGTCTGGGACATGGTTTGGCACCGAAAGGAGAGGTCCCACGTAAGACCAT
GTCTGGGACATGGCATGGGCACCGAGATAGAA
Found at i:22661439 original size:26 final size:26
Alignment explanation
Indices: 22661410--22661461 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22661400 CGATTGGGTT
22661410 ATTACCAGTTACAGGTAAAAGAGCCA
1 ATTACCAGTTACAGGTAAAAGAGCCA
* *
22661436 ATTATCAGTTACGGGTAAAAGAGCCA
1 ATTACCAGTTACAGGTAAAAGAGCCA
22661462 GATGTGCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (26 bp):
ATTACCAGTTACAGGTAAAAGAGCCA
Found at i:22665037 original size:13 final size:13
Alignment explanation
Indices: 22665019--22665045 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22665009 TTTCCAGCAA
22665019 TTATGCATTTATT
1 TTATGCATTTATT
22665032 TTATGCATTTATT
1 TTATGCATTTATT
22665045 T
1 T
22665046 AATCTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGCATTTATT
Found at i:22665207 original size:50 final size:50
Alignment explanation
Indices: 22665148--22665431 Score: 353
Period size: 50 Copynumber: 5.8 Consensus size: 50
22665138 TGGGTAAAGA
*
22665148 GTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* *
22665198 GTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCATCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* * *
22665248 GTCCCATCTAAGACCATGTCTGGGACATGGCATTGGAACCGAGAT--GA-
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* *
22665295 --CCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGACGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
** * * * * * *
22665343 GTCCCCCGTAAGACCATGTCTGGGACGTGACATTGGTACCGAAATGAGAAC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG-AG
* * *
22665394 ATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
22665432 TGTTATTATC
Statistics
Matches: 197, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
45 38 0.19
47 2 0.01
48 2 0.01
50 124 0.63
51 31 0.16
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
Found at i:22665336 original size:95 final size:97
Alignment explanation
Indices: 22665148--22665431 Score: 342
Period size: 95 Copynumber: 2.9 Consensus size: 97
22665138 TGGGTAAAGA
* * * *
22665148 GTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACC
1 GTCCCATCTAAGACCATGTCTGGGACATGGCATTGGAACCGAGAT-AGA-G-CCCATGTAAGACC
* *
22665213 ATGTCTGGGACATGGTGTTGGCATCGAGATGAGAG
63 ATGTCTGGGACATGGTGTTGGCACCGAGACGAGAG
22665248 GTCCCATCTAAGACCATGTCTGGGACATGGCATTGGAACCGAGAT-GA-CCCATGTAAGACCATG
1 GTCCCATCTAAGACCATGTCTGGGACATGGCATTGGAACCGAGATAGAGCCCATGTAAGACCATG
22665311 TCTGGGACATGGTGTTGGCACCGAGACGAGAG
66 TCTGGGACATGGTGTTGGCACCGAGACGAGAG
* * * * * *
22665343 GTCCC-CCGTAAGACCATGTCTGGGACGTGACATTGGTACCGAAATGAGAACATCCCATGTAAGA
1 GTCCCATC-TAAGACCATGTCTGGGACATGGCATTGGAACCGAGAT-AG---AGCCCATGTAAGA
*
22665407 CCATGTCTAGGACATGGCT-TTGGCA
61 CCATGTCTGGGACATGG-TGTTGGCA
22665432 TGTTATTATC
Statistics
Matches: 164, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
94 1 0.01
95 84 0.51
97 1 0.01
98 2 0.01
100 42 0.26
101 33 0.20
102 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (97 bp):
GTCCCATCTAAGACCATGTCTGGGACATGGCATTGGAACCGAGATAGAGCCCATGTAAGACCATG
TCTGGGACATGGTGTTGGCACCGAGACGAGAG
Found at i:22669989 original size:50 final size:50
Alignment explanation
Indices: 22669914--22670197 Score: 380
Period size: 50 Copynumber: 5.8 Consensus size: 50
22669904 GGGTAAAGAG
*
22669914 GTCCCATGTAAGACCATGTCTGGGACATGGCGCTGGCACCGAGATGAGAA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
* *
22669964 GTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
* *
22670014 GTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGAT--G-A
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
* *
22670061 --CCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
* * * ** * *
22670109 GTCCCCTGTAATACCATGTCTGAGACATGGAATGGGCACCGATATGAGAA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
* *
22670159 CATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
22670198 TGTTATTATC
Statistics
Matches: 203, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
45 42 0.21
47 1 0.00
48 1 0.00
50 128 0.63
51 31 0.15
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
Found at i:22670110 original size:95 final size:98
Alignment explanation
Indices: 22669910--22670197 Score: 402
Period size: 95 Copynumber: 2.9 Consensus size: 98
22669900 ATTTGGGTAA
**
22669910 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGCTGGCACCGAGATGAGAAGTCCCATGTAA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT-AGAA-TCCCATGTAA
*
22669975 GACCATGTCTGGGACATGGTGTTGGCACCGAGATG
64 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
22670010 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGAT-G-A-CCCATGTAAGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAGAATCCCATGTAAGA
*
22670072 CCATGTTTGGGACATGGCGTTGGCACCGAGATG
66 CCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * * *
22670105 AGAGGTCCCCTGTAATACCATGTCTGAGACATGGAATGGGCACCGATATGAGAACATCCCATGTA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT-AG-A-ATCCCATGTA
*
22670170 AGACCATGTCTGGGACATGGCTTTGGCA
63 AGACCATGTCTGGGACATGGCGTTGGCA
22670198 TGTTATTATC
Statistics
Matches: 168, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
95 84 0.50
97 2 0.01
98 1 0.01
100 47 0.28
101 34 0.20
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (98 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAGAATCCCATGTAAGA
CCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:22672610 original size:12 final size:11
Alignment explanation
Indices: 22672593--22672634 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
22672583 GGATTTAAGA
22672593 GAAATTTGAGAG
1 GAAA-TTGAGAG
22672605 GAAATTGAGAG
1 GAAATTGAGAG
* *
22672616 CAAATTGAGAA
1 GAAATTGAGAG
22672627 GAAATTGA
1 GAAATTGA
22672635 AAGAATAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 23 0.85
12 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:22672623 original size:22 final size:22
Alignment explanation
Indices: 22672590--22672639 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
22672580 TAGGGATTTA
*
22672590 AGAGAAATTTGAGAGGAAATTG
1 AGAGAAATTTGAGAAGAAATTG
22672612 AGAGCAAA-TTGAGAAGAAATTG
1 AGAG-AAATTTGAGAAGAAATTG
*
22672634 AAAGAA
1 AGAGAA
22672640 TAATAGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 20 0.80
23 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.28, T:0.18
Consensus pattern (22 bp):
AGAGAAATTTGAGAAGAAATTG
Found at i:22672633 original size:11 final size:11
Alignment explanation
Indices: 22672592--22672639 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
22672582 GGGATTTAAG
22672592 AGAAATTTGAGA
1 AGAAA-TTGAGA
*
22672604 GGAAATTGAG-
1 AGAAATTGAGA
22672614 AGCAAATTGAGA
1 AG-AAATTGAGA
22672626 AGAAATTGA-A
1 AGAAATTGAGA
22672636 AGAA
1 AGAA
22672640 TAATAGAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 6 0.19
11 20 0.62
12 6 0.19
ACGTcount: A:0.52, C:0.02, G:0.27, T:0.19
Consensus pattern (11 bp):
AGAAATTGAGA
Found at i:22675700 original size:6 final size:6
Alignment explanation
Indices: 22675689--22675716 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
22675679 ATACGAAATG
22675689 AAATTT AAATTT AAATTT AAATTT AAAT
1 AAATTT AAATTT AAATTT AAATTT AAAT
22675717 GTTCAAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AAATTT
Found at i:22675730 original size:96 final size:96
Alignment explanation
Indices: 22675625--22675800 Score: 293
Period size: 96 Copynumber: 1.8 Consensus size: 96
22675615 ATCAATAAAT
* *
22675625 AAACTAATCAATGTTCAAACTTTGAACATGCTTTATTAAACCT-TCAATTTCA-TTATACGAAAT
1 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAA-CTATCAATAT-ATTTATACGAAAT
22675688 GAAATTTAAATTTAAATTTAAATTTAAATGTTC
64 GAAATTTAAATTTAAATTTAAATTTAAATGTTC
22675721 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTAATCAATATATTTATACGAAATG
1 AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACT-ATCAATATATTTATACGAAATG
22675786 AAATTTAAATTTAAA
65 AAATTTAAATTTAAA
22675801 ATGTTATAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
95 2 0.03
96 40 0.53
97 33 0.44
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (96 bp):
AAACTAATCAATGTTCAAACTTTGAACATGCTTTAATAAACTATCAATATATTTATACGAAATGA
AATTTAAATTTAAATTTAAATTTAAATGTTC
Found at i:22679232 original size:91 final size:91
Alignment explanation
Indices: 22679120--22679403 Score: 356
Period size: 91 Copynumber: 3.0 Consensus size: 91
22679110 ATGATTTTAG
*
22679120 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATAT-ATCATTATTAAATTAT
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAAT-ATTATTAAATTAT
* *
22679184 ATTTAATATTAATTATTTTAAATTGTA
65 ATTTAATAATAATTATTTTAAATTATA
*
22679211 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATAATATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAATATTATTAAATTATA
22679276 TTTAATAATAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
* * * *
22679302 CAAATTCATATAAGAAAATTTATTAGTAATAATTATT-TTAAATTTTATTAAATCATATATTTTA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATT-TTATGAAA--TTA-T--AT-A-ATA--TT-
* *
22679366 ATTAAAATATATTTAATAATAATTATTTCAAATTATA
55 ATTAAATTATATTTAATAATAATTATTTTAAATTATA
22679403 T
1 T
22679404 TTTATAGTAT
Statistics
Matches: 169, Mismatches: 12, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
91 118 0.70
92 4 0.02
93 3 0.02
94 1 0.01
96 2 0.01
97 1 0.01
98 3 0.02
100 2 0.01
101 35 0.21
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATAATATTATTAAATTATA
TTTAATAATAATTATTTTAAATTATA
Found at i:22679246 original size:44 final size:44
Alignment explanation
Indices: 22679120--22679335 Score: 147
Period size: 44 Copynumber: 4.8 Consensus size: 44
22679110 ATGATTTTAG
22679120 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATA
1 TAAATTCATATAAGAATATTTATTATTAAGAA-TTT-T-AAATTATA
* * ** *
22679167 TATCATT-AT-TAA-ATTATATTTAATATTAATTATTTTAAATTGTA
1 TA-AATTCATATAAGA--ATATTTATTATTAAGAATTTTAAATTATA
* *
22679211 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATA
1 TAAATTCATATAAGAATATTTATTATTAAGAA-TTT-T-AAATTATA
* * **
22679258 TAATATT-AT-TAA-ATTATATTTAATAATAATTATTTTAAATTATA
1 TAA-ATTCATATAAGA--ATATTTATTATTAAGAATTTTAAATTATA
* * * *
22679302 CAAATTCATATAAGAAAATTTATTAGTAATAATT
1 TAAATTCATATAAGAATATTTATTATTAAGAATT
22679336 ATTTTAAATT
Statistics
Matches: 131, Mismatches: 23, Indels: 33
0.70 0.12 0.18
Matches are distributed among these distances:
43 6 0.05
44 50 0.38
45 13 0.10
46 15 0.11
47 41 0.31
48 6 0.05
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (44 bp):
TAAATTCATATAAGAATATTTATTATTAAGAATTTTAAATTATA
Found at i:22679334 original size:47 final size:46
Alignment explanation
Indices: 22679120--22679360 Score: 175
Period size: 47 Copynumber: 5.3 Consensus size: 46
22679110 ATGATTTTAG
* * *
22679120 TAAATTCATATAAGAATATTTATTATTAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTA-TAATAATTATT-TTAAATTATA
** * *
22679167 T--A-TCAT-T-ATTAAATTATATTTAATATTAATTATTTTAAATTGTA
1 TAAATTCATATAAGAAAATT-TA-TT-ATAATAATTATTTTAAATTATA
* *
22679211 TAAATTCATATAAGAAAATTTATTATCAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTAT-AATAATTATT-TTAAATTATA
*
22679258 TAATATT-AT-TAA-ATTATATTTA--ATAATAATTATTTTAAATTATA
1 TAA-ATTCATATAAGA--AAATTTATTATAATAATTATTTTAAATTATA
* *
22679302 CAAATTCATATAAGAAAATTTATTAGTAATAATTATTTTAAATTTTA
1 TAAATTCATATAAGAAAATTTATTA-TAATAATTATTTTAAATTATA
22679349 TTAAA-TCATATA
1 -TAAATTCATATA
22679361 TTTTAATTAA
Statistics
Matches: 152, Mismatches: 20, Indels: 44
0.70 0.09 0.20
Matches are distributed among these distances:
42 5 0.03
43 6 0.04
44 46 0.30
45 12 0.08
46 10 0.07
47 58 0.38
48 9 0.06
49 6 0.04
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (46 bp):
TAAATTCATATAAGAAAATTTATTATAATAATTATTTTAAATTATA
Found at i:22679421 original size:59 final size:59
Alignment explanation
Indices: 22679353--22679661 Score: 261
Period size: 59 Copynumber: 5.2 Consensus size: 59
22679343 ATTTTATTAA
22679353 ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
* * ** * * * * * * * *
22679412 ATCATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTGATTATTAAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAGT
22679473 ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
* * ** * * * * * * * *
22679532 ATCATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTGATTATTAAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAGT
*
22679593 ATCATATATTTTATTTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
22679652 ATCATATATT
1 ATCATATATT
22679662 ATGATTTGAG
Statistics
Matches: 185, Mismatches: 49, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
58 10 0.05
59 74 0.40
60 28 0.15
61 63 0.34
62 10 0.05
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (59 bp):
ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
Found at i:22679477 original size:61 final size:61
Alignment explanation
Indices: 22679412--22679722 Score: 261
Period size: 61 Copynumber: 5.2 Consensus size: 61
22679402 ATTTTATAGT
22679412 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * ** * * * * * * * *
22679473 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAGT
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTGATTATTAAGAATTTTATTA-A
22679532 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * * *
22679593 ATCATATATT-TTA-TTTA--AAATAT-ATTTAATAATAATT-ATT-TCAAATTATATTTTA-TA
1 ATCATATATTATGATTTTAGTAAAT-TCATATAAGAAT-ATTGATTAT-TAA-GA-ATTTTATTA
*
22679650 GT
61 -A
* *
22679652 ATCATATATTATGATTTGAGTAAATTCATATAAGAAAATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
*
22679713 ATTATATATT
1 ATCATATATT
22679723 TTAATTAAAA
Statistics
Matches: 189, Mismatches: 39, Indels: 44
0.69 0.14 0.16
Matches are distributed among these distances:
56 1 0.01
57 17 0.09
58 12 0.06
59 52 0.28
60 18 0.10
61 60 0.32
62 12 0.06
63 16 0.08
64 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:22679477 original size:120 final size:120
Alignment explanation
Indices: 22679342--22679751 Score: 784
Period size: 120 Copynumber: 3.4 Consensus size: 120
22679332 AATTATTTTA
22679342 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
22679407 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
22679462 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
22679527 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
*
22679582 AATTTTATTAAATCATATATTTTATTTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
* *
22679647 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAAAATTGATTATTAAG
66 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
*
22679702 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT
22679752 GTTAAAATAT
Statistics
Matches: 285, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 285 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:22679617 original size:18 final size:17
Alignment explanation
Indices: 22679583--22679619 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
22679573 ATTATTAAGA
22679583 ATTTTATTAAATCATAT
1 ATTTTATTAAATCATAT
22679600 ATTTTATTTAAA--ATAT
1 ATTTTA-TTAAATCATAT
22679616 ATTT
1 ATTT
22679620 AATAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATCATAT
Found at i:22679731 original size:18 final size:17
Alignment explanation
Indices: 22679703--22679737 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22679693 ATTATTAAGA
*
22679703 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
22679720 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
22679738 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:22679957 original size:44 final size:45
Alignment explanation
Indices: 22679894--22679990 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
22679884 CTATTACACC
*
22679894 TCCATTCCATTCAACCAAAC-ATAAGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAAT-AGATATACTATTACGCCTCTAT
* * *
22679938 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
*
22679983 TCTATTAC
1 TCCATTAC
22679991 GTCTCTATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
44 21 0.46
45 25 0.54
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:22679989 original size:16 final size:16
Alignment explanation
Indices: 22679968--22680006 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
22679958 AATTGATTTG
22679968 CTATTACGCCTCTATT
1 CTATTACGCCTCTATT
*
22679984 CTATTACGTCTCTATT
1 CTATTACGCCTCTATT
*
22680000 CCATTAC
1 CTATTAC
22680007 TGCGAACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.44
Consensus pattern (16 bp):
CTATTACGCCTCTATT
Found at i:22680164 original size:32 final size:32
Alignment explanation
Indices: 22680128--22680189 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
22680118 GTGACAGTTA
*
22680128 AAAAAATTATTATAATAATAAATTTAACCCAC
1 AAAAAATTATTATAATAATAAATTCAACCCAC
22680160 AAAAAATTATTATAATAATAAATTCAACCC
1 AAAAAATTATTATAATAATAAATTCAACCC
22680190 TCAATTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (32 bp):
AAAAAATTATTATAATAATAAATTCAACCCAC
Found at i:22681400 original size:22 final size:22
Alignment explanation
Indices: 22681365--22681407 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
22681355 AGAAAAAATA
22681365 TTAAATATGGATGATAGTAATTT
1 TTAAATATGGATGATA-TAATTT
*
22681388 TTAAA-ATTGATGATATAATT
1 TTAAATATGGATGATATAATT
22681408 GATGCGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (22 bp):
TTAAATATGGATGATATAATTT
Found at i:22683038 original size:19 final size:20
Alignment explanation
Indices: 22683016--22683054 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
22683006 AATAATTATA
*
22683016 AAAAAGGAAT-TATAATATT
1 AAAAAGGAATATAAAATATT
*
22683035 AAAAAGTAATATAAAATATT
1 AAAAAGGAATATAAAATATT
22683055 TAATATGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (20 bp):
AAAAAGGAATATAAAATATT
Found at i:22683052 original size:20 final size:20
Alignment explanation
Indices: 22682986--22683054 Score: 54
Period size: 20 Copynumber: 3.5 Consensus size: 20
22682976 ATTAAGTTAT
*
22682986 TAAAATATTGAAAAATTAA-A
1 TAAAATATT-AAAAAGTAATA
* *
22683006 -AATAATTATAAAAAAGGAAT-
1 TAA-AA-TATTAAAAAGTAATA
*
22683026 TATAATATTAAAAAGTAATA
1 TAAAATATTAAAAAGTAATA
22683046 TAAAATATT
1 TAAAATATT
22683055 TAATATGGAT
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
19 14 0.38
20 19 0.51
21 4 0.11
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (20 bp):
TAAAATATTAAAAAGTAATA
Found at i:22686100 original size:45 final size:45
Alignment explanation
Indices: 22685987--22686158 Score: 159
Period size: 45 Copynumber: 3.8 Consensus size: 45
22685977 TTTGGATTGA
* ** * * *
22685987 GAAATAAGAAAGAAGATGGTTGAAAGATGCCATGACATTATACCC
1 GAAATGAGAAAGACCATAGTTGAAAGATACCATGGCATTATACCC
* * *
22686032 GAAACGAGAAAGACTATGGTTGAAAGATACCATGGCATTATACCC
1 GAAATGAGAAAGACCATAGTTGAAAGATACCATGGCATTATACCC
* * * * *
22686077 GAAATGAGAAAGACCATACTTGAAAGCA-ACTATGGCACTATATCA
1 GAAATGAGAAAGACCATAGTTGAAAG-ATACCATGGCATTATACCC
* * *
22686122 GAAATGTA-TAAGACCATAGTTGAAATATACTATGGCA
1 GAAATG-AGAAAGACCATAGTTGAAAGATACCATGGCA
22686159 ATACATCGAC
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
44 1 0.01
45 104 0.97
46 2 0.02
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (45 bp):
GAAATGAGAAAGACCATAGTTGAAAGATACCATGGCATTATACCC
Found at i:22686178 original size:45 final size:44
Alignment explanation
Indices: 22686077--22686203 Score: 114
Period size: 45 Copynumber: 2.8 Consensus size: 44
22686067 CATTATACCC
* * *
22686077 GAAATGAGA-AAGACCATACTTGAAAGCAACTATGGCACTATATCA
1 GAAATGA-ATAAGACCATAGTTGAAA-CAACTATGGCAATACATCA
* *
22686122 GAAATGTATAAGACCATAGTTGAAATATACTATGGCAATACATC-
1 GAAATGAATAAGACCATAGTTGAAACA-ACTATGGCAATACATCA
* * * *
22686166 GACAATGAATAAGACTACAGTTTAAAGAGACTATGGCA
1 GA-AATGAATAAGACCATAGTTGAAACA-ACTATGGCA
22686204 TCACTTTGGA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
44 4 0.06
45 64 0.94
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (44 bp):
GAAATGAATAAGACCATAGTTGAAACAACTATGGCAATACATCA
Found at i:22694304 original size:21 final size:22
Alignment explanation
Indices: 22694264--22694310 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
22694254 ATAAATATGA
*
22694264 CAATTCAAAATACATGTATAATT
1 CAATTCAAAATACATATAT-ATT
22694287 CAATT-AAAA-ACATATATATT
1 CAATTCAAAATACATATATATT
22694307 CAAT
1 CAAT
22694311 ACAATTACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 7 0.30
22 4 0.17
23 5 0.22
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (22 bp):
CAATTCAAAATACATATATATT
Found at i:22711844 original size:45 final size:45
Alignment explanation
Indices: 22711777--22711985 Score: 265
Period size: 45 Copynumber: 4.6 Consensus size: 45
22711767 TTGATTTGAG
* ** * * **
22711777 GAAAAGGAAAAAATGATTATTGAAATATATCATTTCATTATAATC
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGGCATTATAATC
*
22711822 GAAAAGGAAAATACCATGATTGAAAGATATCATGGCATTATAATC
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGGCATTATAATC
* ** ** *
22711867 TAAAAGGAAAAGACTGTGATTGAAAGATATCAAAGCATTATAATT
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGGCATTATAATC
*
22711912 GAAAAGGAAAAGACCATGATTGAAAGATATCATGGCATTATACTC
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGGCATTATAATC
* *
22711957 GAAAAGAAAAAGACCATGGTTGAAAGATA
1 GAAAAGGAAAAGACCATGATTGAAAGATA
22711986 CTATGACATC
Statistics
Matches: 141, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 141 1.00
ACGTcount: A:0.48, C:0.09, G:0.18, T:0.25
Consensus pattern (45 bp):
GAAAAGGAAAAGACCATGATTGAAAGATATCATGGCATTATAATC
Found at i:22714194 original size:22 final size:23
Alignment explanation
Indices: 22714165--22714207 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
22714155 TTAGGGGTGT
22714165 TACATTTAG-TGG-TATCAAAGC
1 TACATTTAGTTGGTTATCAAAGC
22714186 TACAGTTTAGTTGGTTATCAAA
1 TACA-TTTAGTTGGTTATCAAA
22714208 CTGAATGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 5 0.26
23 3 0.16
24 7 0.37
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (23 bp):
TACATTTAGTTGGTTATCAAAGC
Found at i:22724327 original size:15 final size:16
Alignment explanation
Indices: 22724300--22724329 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22724290 GATAATAATT
22724300 AATATATATTATATAA
1 AATATATATTATATAA
22724316 AATATA-ATTATATA
1 AATATATATTATATA
22724330 TTAGTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:22734276 original size:9 final size:9
Alignment explanation
Indices: 22734262--22734292 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22734252 GTTAAACGAA
22734262 TCGAGTTAT
1 TCGAGTTAT
*
22734271 TCGAGTTAA
1 TCGAGTTAT
22734280 TCGAGTTAT
1 TCGAGTTAT
22734289 TCGA
1 TCGA
22734293 ATCAACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:22734362 original size:9 final size:9
Alignment explanation
Indices: 22734345--22734381 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22734335 TGAGTTTTCG
22734345 AATTCGAAT
1 AATTCGAAT
*
22734354 AACTCGAAT
1 AATTCGAAT
22734363 AATTCGAAT
1 AATTCGAAT
22734372 AATTCGAAT
1 AATTCGAAT
22734381 A
1 A
22734382 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:22734629 original size:30 final size:31
Alignment explanation
Indices: 22734595--22734654 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
22734585 AAACCTTTTA
22734595 TTTTCCCCCAAAAATTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAAATTTTACTCCCTTCCCAC
* * *
22734625 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAAATTTTACTCCCTTCCCA
22734655 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.22, C:0.40, G:0.00, T:0.38
Consensus pattern (31 bp):
TTTTCCCCCAAAAATTTTACTCCCTTCCCAC
Found at i:22739019 original size:5 final size:5
Alignment explanation
Indices: 22739009--22739035 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
22738999 AAAAATTTCA
22739009 ATTCG ATTCG ATTCG ATTCG ATTCG AT
1 ATTCG ATTCG ATTCG ATTCG ATTCG AT
22739036 CGAATGCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:22739215 original size:29 final size:29
Alignment explanation
Indices: 22739170--22739226 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
22739160 CATCAATAAA
22739170 GATAACCACAAAAAACATATGTAAATTAG
1 GATAACCACAAAAAACATATGTAAATTAG
* *
22739199 GATAACTACAAAGAACATATGTAAATTA
1 GATAACCACAAAAAACATATGTAAATTA
22739227 CAGAAGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.11, T:0.23
Consensus pattern (29 bp):
GATAACCACAAAAAACATATGTAAATTAG
Found at i:22742220 original size:9 final size:9
Alignment explanation
Indices: 22742206--22742269 Score: 94
Period size: 9 Copynumber: 7.2 Consensus size: 9
22742196 TTTGGTTAAA
22742206 AATTACCCG
1 AATTACCCG
22742215 AATTACCCG
1 AATTACCCG
22742224 AATTACCCG
1 AATTACCCG
*
22742233 -ATTAACCG
1 AATTACCCG
*
22742241 AATTAACCG
1 AATTACCCG
*
22742250 AATTAACCG
1 AATTACCCG
22742259 AATTACCCG
1 AATTACCCG
22742268 AA
1 AA
22742270 AATTACCCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
8 7 0.13
9 45 0.87
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:22742699 original size:14 final size:16
Alignment explanation
Indices: 22742680--22742711 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
22742670 TAAGTCATAA
22742680 ATAATATA-AA-ATTT
1 ATAATATATAACATTT
22742694 ATAATATATAACATTT
1 ATAATATATAACATTT
22742710 AT
1 AT
22742712 TTAAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATATATAACATTT
Found at i:22748341 original size:26 final size:28
Alignment explanation
Indices: 22748289--22748341 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
22748279 TTAAGAAATC
*
22748289 TATTATTATTTTTTTATTATACTTATTCA
1 TATTATTATATTTTTATTATAC-TATTCA
*
22748318 TATTATTGTATTTTT-TTATA-TATT
1 TATTATTATATTTTTATTATACTATT
22748342 TGTTCTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 4 0.18
28 5 0.23
29 13 0.59
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (28 bp):
TATTATTATATTTTTATTATACTATTCA
Found at i:22751830 original size:33 final size:34
Alignment explanation
Indices: 22751776--22751841 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 34
22751766 TACATGCATT
*
22751776 TATATATAGTATTTTTTTTATACAAACACTAACA
1 TATAAATAGTATTTTTTTTATACAAACACTAACA
22751810 TATAAATAGTA-TTTTTTTATACAAACACTAAC
1 TATAAATAGTATTTTTTTTATACAAACACTAAC
22751842 CAGAGGTGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 21 0.68
34 10 0.32
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (34 bp):
TATAAATAGTATTTTTTTTATACAAACACTAACA
Found at i:22752772 original size:21 final size:21
Alignment explanation
Indices: 22752746--22752791 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
22752736 ATATAGGCTA
* *
22752746 TATATATGTTTATTTAGTA-AT
1 TATATATATATATTTA-TATAT
22752767 TATATATATATATTTATATAT
1 TATATATATATATTTATATAT
22752788 TATA
1 TATA
22752792 GCAATATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (21 bp):
TATATATATATATTTATATAT
Found at i:22753314 original size:23 final size:24
Alignment explanation
Indices: 22753286--22753331 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
22753276 TATACGCTAT
*
22753286 ATTTTTGT-TGAATAAAATCAACA
1 ATTTTTATGTGAATAAAATCAACA
*
22753309 ATTTTTATGTGAATAATATCAAC
1 ATTTTTATGTGAATAAAATCAAC
22753332 TTTATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (24 bp):
ATTTTTATGTGAATAAAATCAACA
Found at i:22754102 original size:31 final size:29
Alignment explanation
Indices: 22754067--22754132 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 29
22754057 TTTGTAGTAG
*
22754067 ATAAAATTATATTTTAACCCTTTTTAAAA-TT
1 ATAAAATT-TAATTTAACCC--TTTAAAATTT
*
22754098 ATAAAAATTTAATTTAATCCTTTAAAATTT
1 AT-AAAATTTAATTTAACCCTTTAAAATTT
22754128 ATAAA
1 ATAAA
22754133 GATAAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
29 10 0.32
30 4 0.13
31 11 0.35
32 6 0.19
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (29 bp):
ATAAAATTTAATTTAACCCTTTAAAATTT
Found at i:22756742 original size:98 final size:98
Alignment explanation
Indices: 22756609--22757689 Score: 1986
Period size: 98 Copynumber: 11.0 Consensus size: 98
22756599 TTAAAAATTA
* * * * *
22756609 TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22756674 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22756707 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22756772 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22756805 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22756870 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22756903 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22756968 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22757001 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22757066 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22757099 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22757164 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22757197 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22757262 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22757295 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22757360 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22757393 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
* * *
22757458 TTAAATCTTGGATAAGTAAGAT-TT-TTTAAAAATTA
66 TTAAATCTTGGATAAGT-GGATGTTCTTT-TAAA--G
* * * * *
22757493 TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22757558 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22757591 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
22757656 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22757689 T
1 T
22757690 TTTATTGTAC
Statistics
Matches: 955, Mismatches: 22, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
97 3 0.00
98 861 0.90
99 6 0.01
100 82 0.09
101 3 0.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:22769105 original size:45 final size:45
Alignment explanation
Indices: 22769056--22769178 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 45
22769046 GATCGCATCT
*
22769056 AGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACT-AAGCAAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-AAAGCA
* **
22769101 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGGCTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCA
* *
22769146 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
22769179 TTAAAGCCGA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
44 3 0.05
45 57 0.86
46 6 0.09
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCA
Found at i:22769374 original size:45 final size:45
Alignment explanation
Indices: 22769256--22769374 Score: 118
Period size: 45 Copynumber: 2.6 Consensus size: 45
22769246 GCATCTAGTT
* * *
22769256 TTATCTCCCTAAAGTTGTAGTGGAGCAGACTAAGCAAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAATC
* * **
22769301 TTATC-CTCTTGAAGTTTCAGT-GAGGCAGACTGAAG-ATGGCAAATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGCAAAGCAAATC
*
22769346 TTATCTCCCTGAAGTTGCGGTGGAGCAGA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA
22769375 TTAAAGCCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
44 3 0.05
45 50 0.85
46 6 0.10
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAATC
Found at i:22769402 original size:44 final size:42
Alignment explanation
Indices: 22769342--22769628 Score: 177
Period size: 44 Copynumber: 6.7 Consensus size: 42
22769332 GAAGATGGCA
*
22769342 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-CC-AT
* ** **
22769386 AATCCTATCTCCCTGAAGTTATAGTGGAGTGGATTAAAACC-T
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAACCAT
* * * * *** *
22769428 CAGATCTTATCTCTCTGAAGATGCAG-AGAGTAGATCGTATC-T
1 -A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCAT
* * * *
22769470 AGTCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCGAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-CC-AT
* * * *
22769514 AATCCTATTTCCCTGAAGTTGCAGTGGAGCGGATTATAACCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AACCAT
* * * * * * **
22769557 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCACATCGG
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCAT
*
22769600 GA-CTTAATCTCCCTGAAGTTGCAGTGGAG
1 AATCTT-ATCTCCCTGAAGTTGCAGTGGAG
22769629 TAGACTCAAG
Statistics
Matches: 185, Mismatches: 48, Indels: 22
0.73 0.19 0.09
Matches are distributed among these distances:
40 20 0.11
41 11 0.06
42 27 0.15
43 13 0.07
44 109 0.59
45 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (42 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCAT
Found at i:22769503 original size:128 final size:129
Alignment explanation
Indices: 22769344--22769623 Score: 400
Period size: 128 Copynumber: 2.2 Consensus size: 129
22769334 AGATGGCAAA
* * * * *
22769344 TCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTATA
1 TCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTACA
* * ** *
22769409 GTGGAGTGGATTAAAACCTCAGATCTTATCTCTCTGAAGATGCAG-AGAGTAGATCGTATCTAG
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGATGCAGTAGAGTAGATCACATCGAG
* *
22769472 TCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCGACAATCCTATTTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTACA
* * *
22769537 GTGGAGCGGATTATAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCACATCGGG
66 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGATGCAGTAGAGTAGATCACATCGAG
*
22769601 ACTTAATCTCCCTGAAGTTGCAG
1 TCTT-ATCTCCCTGAAGTTGCAG
22769624 TGGAGTAGAC
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
128 99 0.74
129 17 0.13
130 18 0.13
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTACA
GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGATGCAGTAGAGTAGATCACATCGAG
Found at i:22769952 original size:14 final size:15
Alignment explanation
Indices: 22769933--22769970 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
22769923 CCAGATAAGG
22769933 TGGCCCAAAATAC-A
1 TGGCCCAAAATACAA
22769947 TGGCCC-AAATACAA
1 TGGCCCAAAATACAA
22769961 TGGCCCAAAA
1 TGGCCCAAAA
22769971 AAATTAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.27
14 13 0.59
15 3 0.14
ACGTcount: A:0.42, C:0.29, G:0.16, T:0.13
Consensus pattern (15 bp):
TGGCCCAAAATACAA
Found at i:22771784 original size:98 final size:98
Alignment explanation
Indices: 22771651--22771847 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
22771641 TTAAAAATTA
* * *
22771651 TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGGGTGATTTC
*
22771716 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
* *
22771749 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGGGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGGGTGATTTC
22771814 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
22771847 T
1 T
22771848 TTTATTGTAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGGGTGATTTC
TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
Found at i:22777030 original size:23 final size:23
Alignment explanation
Indices: 22776973--22777030 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
22776963 GACTGTCTGA
*
22776973 GGTATCACAATATCCTATTCATT
1 GGTATCACGATATCCTATTCATT
*
22776996 GGTATCACGATATCCTATTCCTT
1 GGTATCACGATATCCTATTCATT
*
22777019 GGTATCATGATA
1 GGTATCACGATA
22777031 CCAACATCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (23 bp):
GGTATCACGATATCCTATTCATT
Found at i:22785071 original size:54 final size:55
Alignment explanation
Indices: 22785011--22785121 Score: 145
Period size: 54 Copynumber: 2.0 Consensus size: 55
22785001 TCCAGGTCAT
* * *
22785011 TTTTTATTTTGGAGAAAACCATAT-TTTCCAAATGTTTCCCA-TTCCCCATTTTTA
1 TTTTTATTTCGGAGAAAACCACATCTTT-CAAATATTTCCCATTTCCCCATTTTTA
** *
22785065 TTTTTATTTCGGAGAAAACCACATCTTTCAAATATTTTTCATTTCTCCATTTTTA
1 TTTTTATTTCGGAGAAAACCACATCTTTCAAATATTTCCCATTTCCCCATTTTTA
22785120 TT
1 TT
22785122 ATTCTTATCC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (55 bp):
TTTTTATTTCGGAGAAAACCACATCTTTCAAATATTTCCCATTTCCCCATTTTTA
Found at i:22792795 original size:31 final size:31
Alignment explanation
Indices: 22792760--22792833 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
22792750 AAATTTTGTT
* **
22792760 ATTTTAGTCACTCTTATTAAATAAGTTGTCA
1 ATTTTAGTCACTCTCATTAAATAAGTAATCA
* *
22792791 ATTTTAATCACTCTCATTAGATAAGTAATCA
1 ATTTTAGTCACTCTCATTAAATAAGTAATCA
22792822 ATTTTAGTCACT
1 ATTTTAGTCACT
22792834 ATACCGTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.43
Consensus pattern (31 bp):
ATTTTAGTCACTCTCATTAAATAAGTAATCA
Found at i:22793622 original size:10 final size:9
Alignment explanation
Indices: 22793569--22793646 Score: 54
Period size: 10 Copynumber: 8.4 Consensus size: 9
22793559 TTTTCAATAT
22793569 ATTTTTATA
1 ATTTTTATA
22793578 ATTTTT-TGA
1 ATTTTTAT-A
* *
22793587 GTATTTCATA
1 AT-TTTTATA
22793597 TATTTTTATAA
1 -ATTTTTAT-A
*
22793608 ATTTTAATA
1 ATTTTTATA
22793617 ATTTTT-TA
1 ATTTTTATA
*
22793625 ATTTTTATGT
1 ATTTTTAT-A
22793635 ATTTTTA-A
1 ATTTTTATA
22793643 ATTT
1 ATTT
22793647 AAATTTTAGA
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
8 13 0.24
9 15 0.28
10 23 0.43
11 3 0.06
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:22794028 original size:22 final size:22
Alignment explanation
Indices: 22793981--22794035 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
22793971 CTAAATTTTA
*
22793981 AAATTTAAAAAATATAGAGATT
1 AAATTTAAAAAATATAGAAATT
22794003 AAATTCTAAAAAATA-A-AAATT
1 AAATT-TAAAAAATATAGAAATT
22794024 CAAATATTAAAA
1 -AAAT-TTAAAA
22794036 TTTAAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 4 0.14
22 15 0.52
23 10 0.34
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (22 bp):
AAATTTAAAAAATATAGAAATT
Found at i:22794272 original size:17 final size:17
Alignment explanation
Indices: 22794250--22794283 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22794240 ATCATGCTTT
*
22794250 CCTGCCCACTTATTTCA
1 CCTGCCCACCTATTTCA
22794267 CCTGCCCACCTATTTCA
1 CCTGCCCACCTATTTCA
22794284 ACCGCAGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.44, G:0.06, T:0.32
Consensus pattern (17 bp):
CCTGCCCACCTATTTCA
Found at i:22796770 original size:37 final size:37
Alignment explanation
Indices: 22796720--22796794 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
22796710 TGGGGGTTTT
22796720 CCGTTTCTTCTCATGGAATTTAGGTTGTGAAATCAGA
1 CCGTTTCTTCTCATGGAATTTAGGTTGTGAAATCAGA
22796757 CCGTTTCTTCTCATGGAATTTAGGTTGTGAAATCAGA
1 CCGTTTCTTCTCATGGAATTTAGGTTGTGAAATCAGA
22796794 C
1 C
22796795 TCAAATAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (37 bp):
CCGTTTCTTCTCATGGAATTTAGGTTGTGAAATCAGA
Done.