Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 77 of 126
Found at i:23099793 original size:46 final size:46
Alignment explanation
Indices: 23099742--23099834 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
23099732 TAGTGTGGCA
23099742 TTCATCATATACCAAGGTTCCTATCATAATTGATAGTGGGTCGAGG
1 TTCATCATATACCAAGGTTCCTATCATAATTGATAGTGGGTCGAGG
**
23099788 TTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAGG
1 TTCATCATATACCAAGGTTCCTATCATAATTGATAGTGGGTCGAGG
23099834 T
1 T
23099835 CTTTTCTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (46 bp):
TTCATCATATACCAAGGTTCCTATCATAATTGATAGTGGGTCGAGG
Found at i:23104017 original size:40 final size:40
Alignment explanation
Indices: 23103966--23104550 Score: 974
Period size: 40 Copynumber: 14.6 Consensus size: 40
23103956 CATTTGAATG
23103966 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
23104006 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
23104046 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
23104086 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
23104126 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
23104166 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
23104206 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
23104246 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
23104286 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
23104326 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
23104366 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * * * *
23104406 ATATCTGGGATAAGACCCGATGGCGTTTGTGCTAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
23104446 ATATCCGGGCTAAGACCCGCAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
23104486 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
23104526 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
23104551 ATTGAGCTTG
Statistics
Matches: 513, Mismatches: 30, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 510 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:23109702 original size:33 final size:34
Alignment explanation
Indices: 23109631--23109704 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 34
23109621 TTTTACTTTA
* * * *
23109631 TTTCTTTCTTCACTCGTTTCTTTTGTAGACTCTT
1 TTTCTTTCTTCACTCGTTTCTTTTGCAAACCCTC
23109665 TTTCTTTC-TCACTCGATTTCTTTT-CAAACCCTC
1 TTTCTTTCTTCACTCG-TTTCTTTTGCAAACCCTC
23109698 TTTCTTT
1 TTTCTTT
23109705 TTCTTTTTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 19 0.54
34 16 0.46
ACGTcount: A:0.11, C:0.27, G:0.05, T:0.57
Consensus pattern (34 bp):
TTTCTTTCTTCACTCGTTTCTTTTGCAAACCCTC
Found at i:23109751 original size:6 final size:6
Alignment explanation
Indices: 23109698--23109758 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
23109688 TCAAACCCTC
* * * *
23109698 TTTCTT TTTCTT TTTCAT TTTCAT TTTC-T TTT-A- TTTCAA TTTCTT
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT
23109743 TTTCAT TTTCAT TTTC
1 TTTCAT TTTCAT TTTC
23109759 TCGCTTGCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
4 3 0.06
5 5 0.10
6 40 0.83
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTCAT
Found at i:23112605 original size:10 final size:11
Alignment explanation
Indices: 23112590--23112637 Score: 59
Period size: 10 Copynumber: 4.7 Consensus size: 11
23112580 TTCGGTTAAG
23112590 ATTGAGCT-GA
1 ATTGAGCTCGA
23112600 ATTGAGCTCGA
1 ATTGAGCTCGA
23112611 A-TGAGCT-GA
1 ATTGAGCTCGA
*
23112620 CTTGAGCTCG-
1 ATTGAGCTCGA
23112630 ATTGAGCT
1 ATTGAGCT
23112638 TAACTAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 2 0.06
10 27 0.82
11 4 0.12
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (11 bp):
ATTGAGCTCGA
Found at i:23112615 original size:20 final size:20
Alignment explanation
Indices: 23112592--23112637 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
23112582 CGGTTAAGAT
23112592 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* *
23112612 TGAGCTGACTTGAGCTCGAT
1 TGAGCTGAATTGAGCTCGAA
23112632 TGAGCT
1 TGAGCT
23112638 TAACTAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:23120488 original size:15 final size:15
Alignment explanation
Indices: 23120468--23120498 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23120458 GTAGGTATAA
*
23120468 AAAAAGAAGAAAAAG
1 AAAAAGAAAAAAAAG
23120483 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
23120498 A
1 A
23120499 TGCATATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAAG
Found at i:23126124 original size:14 final size:14
Alignment explanation
Indices: 23126105--23126131 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23126095 TTTTTGTTTT
23126105 GTTTCATATCTACG
1 GTTTCATATCTACG
23126119 GTTTCATATCTAC
1 GTTTCATATCTAC
23126132 TCGATCTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (14 bp):
GTTTCATATCTACG
Found at i:23131043 original size:20 final size:21
Alignment explanation
Indices: 23131018--23131057 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
23131008 TAGAAAGATG
23131018 GAAATGAGCTC-ATTGAGCTA
1 GAAATGAGCTCAATTGAGCTA
23131038 GAAATGAGCTCAATTGAGCT
1 GAAATGAGCTCAATTGAGCT
23131058 CAACAAGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (21 bp):
GAAATGAGCTCAATTGAGCTA
Found at i:23133283 original size:12 final size:12
Alignment explanation
Indices: 23133266--23133320 Score: 51
Period size: 12 Copynumber: 4.4 Consensus size: 12
23133256 CTTTTCTCGA
23133266 TCTTTCTTTTCT
1 TCTTTCTTTTCT
23133278 TCTTTCTTTCTCAT
1 TCTTTCTTT-TC-T
*
23133292 T-TTTATTTTCT
1 TCTTTCTTTTCT
23133303 T-TTTCGTTTTCT
1 TCTTTC-TTTTCT
23133315 CTCTTT
1 -TCTTT
23133321 TGTTCCATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
11 5 0.14
12 17 0.47
13 9 0.25
14 5 0.14
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.73
Consensus pattern (12 bp):
TCTTTCTTTTCT
Found at i:23133313 original size:26 final size:26
Alignment explanation
Indices: 23133251--23133315 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
23133241 CAGTACGTAA
*
23133251 TTTTTCTTTTCTCGATCTTTCTTTTC
1 TTTTTCTTTTCTCGATCTTTATTTTC
*
23133277 TTCTTTC-TTTCTC-ATTTTTATTTTC
1 TT-TTTCTTTTCTCGATCTTTATTTTC
23133302 TTTTTCGTTTTCTC
1 TTTTTC-TTTTCTC
23133316 TCTTTTGTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 4 0.12
25 12 0.35
26 14 0.41
27 4 0.12
ACGTcount: A:0.05, C:0.22, G:0.03, T:0.71
Consensus pattern (26 bp):
TTTTTCTTTTCTCGATCTTTATTTTC
Found at i:23135732 original size:27 final size:27
Alignment explanation
Indices: 23135701--23135878 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23135691 TAAATTGTAC
23135701 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23135728 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23135754 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23135782 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23135810 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23135837 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23135864 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23135879 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23135815 original size:82 final size:81
Alignment explanation
Indices: 23135702--23135857 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23135692 AAATTGTACA
* *
23135702 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23135766 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23135783 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23135848 TGCGAGTTGA
65 TGCGAATTGA
23135858 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23135869 original size:82 final size:81
Alignment explanation
Indices: 23135698--23135878 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
23135688 GATTAAATTG
* *
23135698 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23135763 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23135779 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23135843 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23135861 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23135879 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23142209 original size:40 final size:40
Alignment explanation
Indices: 23142154--23142587 Score: 715
Period size: 40 Copynumber: 10.8 Consensus size: 40
23142144 GAGCATTTGA
*
23142154 ATATATCCTGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142194 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142234 ATATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142274 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142314 ATATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142354 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142394 ATATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142434 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
23142474 ATATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
23142514 ATATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * * *
23142554 CTATGCCCGAGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
23142588 TTGTGGTAAT
Statistics
Matches: 367, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 367 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:23146093 original size:52 final size:52
Alignment explanation
Indices: 23146031--23146131 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
23146021 CATGCACATA
* *
23146031 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGTTGTCTATTATTG
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
*
23146083 TTTGAGCTTCAACCGCGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
23146132 CTTTTCCTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (52 bp):
TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
Found at i:23149293 original size:30 final size:30
Alignment explanation
Indices: 23149257--23149316 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
23149247 AGGCAAATCA
23149257 GCAGGAAACTCAGCCAATAAACAATGATCT
1 GCAGGAAACTCAGCCAATAAACAATGATCT
*
23149287 GCAGGAAACTCATCCAATAAACAATGATCT
1 GCAGGAAACTCAGCCAATAAACAATGATCT
23149317 TTAAACATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.18
Consensus pattern (30 bp):
GCAGGAAACTCAGCCAATAAACAATGATCT
Found at i:23150354 original size:16 final size:18
Alignment explanation
Indices: 23150333--23150365 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23150323 AACTCAACAT
23150333 AATG-TTGC-ATTTCAAC
1 AATGTTTGCTATTTCAAC
23150349 AATGTTTGCTATTTCAA
1 AATGTTTGCTATTTCAA
23150366 AATTTAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 4 0.27
18 7 0.47
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (18 bp):
AATGTTTGCTATTTCAAC
Found at i:23152773 original size:52 final size:52
Alignment explanation
Indices: 23152695--23152795 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
23152685 CATGCACATA
*
23152695 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCTATTATTG
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCCATTATTG
*
23152747 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCCATTA
23152796 CTTTTCCTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (52 bp):
TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCCATTATTG
Found at i:23157307 original size:20 final size:20
Alignment explanation
Indices: 23157278--23157362 Score: 127
Period size: 20 Copynumber: 4.3 Consensus size: 20
23157268 AGCTAAAAAC
23157278 GAGCTC-AATGAGCTGAATT
1 GAGCTCGAATGAGCTGAATT
*
23157297 GAGCTTGAATGAGCTGAATT
1 GAGCTCGAATGAGCTGAATT
* *
23157317 GAGCTCAAATGAGCTGACTT
1 GAGCTCGAATGAGCTGAATT
*
23157337 GAGCTCGAATGAGCTGACTT
1 GAGCTCGAATGAGCTGAATT
23157357 GAGCTC
1 GAGCTC
23157363 AAGTGAGTTG
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
19 5 0.08
20 55 0.92
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (20 bp):
GAGCTCGAATGAGCTGAATT
Found at i:23157331 original size:40 final size:40
Alignment explanation
Indices: 23157278--23157374 Score: 142
Period size: 40 Copynumber: 2.5 Consensus size: 40
23157268 AGCTAAAAAC
*
23157278 GAGCTC-AATGAGCTGAATTGAGCTTGAATGAGCTGAATT
1 GAGCTCAAATGAGCTGAATTGAGCTCGAATGAGCTGAATT
* *
23157317 GAGCTCAAATGAGCTGACTTGAGCTCGAATGAGCTGACTT
1 GAGCTCAAATGAGCTGAATTGAGCTCGAATGAGCTGAATT
* *
23157357 GAGCTCAAGTGAGTTGAA
1 GAGCTCAAATGAGCTGAA
23157375 CCACATGAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 6 0.12
40 45 0.88
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (40 bp):
GAGCTCAAATGAGCTGAATTGAGCTCGAATGAGCTGAATT
Found at i:23157369 original size:10 final size:10
Alignment explanation
Indices: 23157286--23157361 Score: 84
Period size: 10 Copynumber: 7.6 Consensus size: 10
23157276 ACGAGCTCAA
23157286 TGAGCTGAAT
1 TGAGCTGAAT
23157296 TGAGCTTGAA-
1 TGAGC-TGAAT
23157306 TGAGCTGAAT
1 TGAGCTGAAT
* *
23157316 TGAGCTCAAA
1 TGAGCTGAAT
*
23157326 TGAGCTGACT
1 TGAGCTGAAT
23157336 TGAGCTCGAA-
1 TGAGCT-GAAT
*
23157346 TGAGCTGACT
1 TGAGCTGAAT
23157356 TGAGCT
1 TGAGCT
23157362 CAAGTGAGTT
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
9 6 0.11
10 43 0.78
11 6 0.11
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (10 bp):
TGAGCTGAAT
Found at i:23157369 original size:20 final size:19
Alignment explanation
Indices: 23157278--23157374 Score: 122
Period size: 20 Copynumber: 4.9 Consensus size: 19
23157268 AGCTAAAAAC
23157278 GAGCTCAATGAGCTGAATT
1 GAGCTCAATGAGCTGAATT
*
23157297 GAGCTTGAATGAGCTGAATT
1 GAGC-TCAATGAGCTGAATT
*
23157317 GAGCTCAAATGAGCTGACTT
1 GAGCTC-AATGAGCTGAATT
*
23157337 GAGCTCGAATGAGCTGACTT
1 GAGCTC-AATGAGCTGAATT
*
23157357 GAGCTCAAGTGAGTTGAA
1 GAGCTCAA-TGAGCTGAA
23157375 CCACATGAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
19 7 0.10
20 62 0.90
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (19 bp):
GAGCTCAATGAGCTGAATT
Found at i:23160899 original size:17 final size:18
Alignment explanation
Indices: 23160877--23160918 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
23160867 TATCATATCA
*
23160877 CTCATTTCTTT-TGCACT
1 CTCATTTCTTTCTGCAAT
*
23160894 CTCATTTCTTTCTTCAAT
1 CTCATTTCTTTCTGCAAT
23160912 CTCATTT
1 CTCATTT
23160919 TCAATTTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.14, C:0.29, G:0.02, T:0.55
Consensus pattern (18 bp):
CTCATTTCTTTCTGCAAT
Found at i:23162902 original size:22 final size:23
Alignment explanation
Indices: 23162858--23162902 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
23162848 GTACCTATTT
*
23162858 CCAAATCTAATTCGTACCAAAAC
1 CCAAATCTAATTCGTAACAAAAC
* *
23162881 CCAAATCT-TTTCGTAACTAAAC
1 CCAAATCTAATTCGTAACAAAAC
23162903 ATAAATCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.40, C:0.29, G:0.04, T:0.27
Consensus pattern (23 bp):
CCAAATCTAATTCGTAACAAAAC
Found at i:23166879 original size:14 final size:13
Alignment explanation
Indices: 23166851--23166897 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
23166841 AATAAGTGAG
**
23166851 GAAAAAGAAGGAT
1 GAAAAAGAAAAAT
*
23166864 GAGAAGAGAAAAAT
1 GA-AAAAGAAAAAT
23166878 GAAAAAGAAAAA-
1 GAAAAAGAAAAAT
23166890 GAAAAAGA
1 GAAAAAGA
23166898 TGAAATGAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 8 0.28
13 11 0.38
14 10 0.34
ACGTcount: A:0.70, C:0.00, G:0.26, T:0.04
Consensus pattern (13 bp):
GAAAAAGAAAAAT
Found at i:23166939 original size:18 final size:18
Alignment explanation
Indices: 23166918--23166954 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
23166908 TTTCAAAAAC
23166918 AAAAGAGAGTGAAAAGGA
1 AAAAGAGAGTGAAAAGGA
*
23166936 AAAAGAGATTGAAAAGGA
1 AAAAGAGAGTGAAAAGGA
23166954 A
1 A
23166955 GTAAGTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.30, T:0.08
Consensus pattern (18 bp):
AAAAGAGAGTGAAAAGGA
Found at i:23170607 original size:70 final size:69
Alignment explanation
Indices: 23170494--23170623 Score: 199
Period size: 70 Copynumber: 1.9 Consensus size: 69
23170484 GAGTTAGTTA
* *
23170494 TTGAACTTTATTAAATAAGATGATTCTTAATTCATCTATTTCCTAGGATTATTTATTGATCTGTT
1 TTGAACTTTATTAAATAAGATGATTCTTAATTAATCTAGTTCCTAGGATTATTTATTGATCTGTT
23170559 TTTG
66 TTTG
* *
23170563 TTGAACTTTATTTAATAAG-TGTTGTTCTTAATTAATCTAGTTCCTAGGATTATTTATTGAT
1 TTGAACTTTATTAAATAAGATG--ATTCTTAATTAATCTAGTTCCTAGGATTATTTATTGAT
23170624 GCATGAGTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
68 2 0.04
69 18 0.33
70 35 0.64
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (69 bp):
TTGAACTTTATTAAATAAGATGATTCTTAATTAATCTAGTTCCTAGGATTATTTATTGATCTGTT
TTTG
Found at i:23172627 original size:22 final size:22
Alignment explanation
Indices: 23172599--23172642 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23172589 TTTTGAACCA
23172599 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
23172621 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
23172643 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:23173437 original size:14 final size:14
Alignment explanation
Indices: 23173418--23173460 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
23173408 GGATATCAAG
23173418 TTGTGAAAAAAAAT
1 TTGTGAAAAAAAAT
23173432 TTGTGAAAAAAAAAAT
1 TTGTG--AAAAAAAAT
*
23173448 TCGTGAAAAAAAA
1 TTGTGAAAAAAAA
23173461 AAAGAAAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 13 0.50
16 13 0.50
ACGTcount: A:0.60, C:0.02, G:0.14, T:0.23
Consensus pattern (14 bp):
TTGTGAAAAAAAAT
Found at i:23173444 original size:16 final size:16
Alignment explanation
Indices: 23173423--23173462 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
23173413 TCAAGTTGTG
*
23173423 AAAAAAAATTTGTGAA
1 AAAAAAAATTCGTGAA
23173439 AAAAAAAATTCGTGAA
1 AAAAAAAATTCGTGAA
23173455 AAAAAAAA
1 AAAAAAAA
23173463 AGAAAACAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.70, C:0.03, G:0.10, T:0.17
Consensus pattern (16 bp):
AAAAAAAATTCGTGAA
Found at i:23189554 original size:15 final size:14
Alignment explanation
Indices: 23189492--23189558 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 14
23189482 AGATTGAGAG
23189492 ATGAA-AAAAAGAA
1 ATGAAGAAAAAGAA
23189505 ATGAAAGAAAAAGAA
1 ATG-AAGAAAAAGAA
* *
23189520 AT-CA-AAAAAGTA
1 ATGAAGAAAAAGAA
23189532 A-G-AGAAAAAGAAA
1 ATGAAGAAAAAG-AA
23189545 ATGAAG-AAAAGAA
1 ATGAAGAAAAAGAA
23189558 A
1 A
23189559 ATTGAAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
11 1 0.02
12 14 0.32
13 9 0.20
14 8 0.18
15 12 0.27
ACGTcount: A:0.73, C:0.01, G:0.18, T:0.07
Consensus pattern (14 bp):
ATGAAGAAAAAGAA
Found at i:23189571 original size:18 final size:18
Alignment explanation
Indices: 23189548--23189596 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
23189538 AAAGAAAATG
23189548 AAGAAAAGAAAATTGAAA
1 AAGAAAAGAAAATTGAAA
** * *
23189566 AAGAAATTAAGATTGAGA
1 AAGAAAAGAAAATTGAAA
23189584 AAGAAAAGAAAAT
1 AAGAAAAGAAAAT
23189597 GAGTTAGAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.14
Consensus pattern (18 bp):
AAGAAAAGAAAATTGAAA
Found at i:23189572 original size:26 final size:25
Alignment explanation
Indices: 23189508--23189577 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
23189498 AAAAGAAATG
23189508 AAAGAAAAAGAAATCAA-AAAAGTA
1 AAAGAAAAAGAAATCAAGAAAAGTA
* *
23189532 AGAGAAAAAGAAAATGAAGAAAAG-A
1 AAAGAAAAAG-AAATCAAGAAAAGTA
*
23189557 AAATTGAAAAAGAAATTAAGA
1 AAA--GAAAAAGAAATCAAGA
23189578 TTGAGAAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
24 9 0.24
25 9 0.24
26 13 0.34
27 7 0.18
ACGTcount: A:0.71, C:0.01, G:0.17, T:0.10
Consensus pattern (25 bp):
AAAGAAAAAGAAATCAAGAAAAGTA
Found at i:23189633 original size:27 final size:27
Alignment explanation
Indices: 23189581--23189635 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
23189571 ATTAAGATTG
* * *
23189581 AGAAAGAAAAGAAAATGAGTTAGAAAA
1 AGAAACAAAAGAAAAAGAGTGAGAAAA
*
23189608 AGAAACAAAAGAAAAAGA-TGAGGAAA
1 AGAAACAAAAGAAAAAGAGTGAGAAAA
23189634 AG
1 AG
23189636 GTAGTGAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (27 bp):
AGAAACAAAAGAAAAAGAGTGAGAAAA
Found at i:23198325 original size:18 final size:20
Alignment explanation
Indices: 23198304--23198353 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
23198294 AAAGGAAGAC
23198304 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
23198322 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
23198342 AGGAAAAAGAGA
1 A-GAAAAAGAGA
23198354 TTGAGAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 1 0.04
21 10 0.36
ACGTcount: A:0.72, C:0.02, G:0.22, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:23209834 original size:16 final size:16
Alignment explanation
Indices: 23209813--23209845 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23209803 ATTGTAATTG
23209813 AAAAAAAATATATTCA
1 AAAAAAAATATATTCA
*
23209829 AAAAAAAATGTATTCA
1 AAAAAAAATATATTCA
23209845 A
1 A
23209846 TTTCTCCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.67, C:0.06, G:0.03, T:0.24
Consensus pattern (16 bp):
AAAAAAAATATATTCA
Found at i:23222678 original size:18 final size:18
Alignment explanation
Indices: 23222657--23222700 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
23222647 AAAGGAAGAC
23222657 AGAAAAAGA-AATCGAAAA
1 AGAAAAAGAGAAT-GAAAA
23222675 AGAAAAAGAGAATGAAAA
1 AGAAAAAGAGAATGAAAA
23222693 AGAGAAAA
1 AGA-AAAA
23222701 AAGAGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (18 bp):
AGAAAAAGAGAATGAAAA
Found at i:23225975 original size:29 final size:29
Alignment explanation
Indices: 23225912--23225979 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
23225902 TAATCAACCA
23225912 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
23225941 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
23225970 CGCACACTTA
1 CGCACACTTA
23225980 CCTTTTNNNN
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:23229502 original size:40 final size:40
Alignment explanation
Indices: 23229458--23229719 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
23229448 GCTCCTCGTT
* *
23229458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
23229498 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23229538 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23229577 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23229616 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
23229655 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
23229696 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23229720 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:23237719 original size:29 final size:29
Alignment explanation
Indices: 23237656--23237723 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
23237646 TAATCAACCG
*
23237656 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
23237685 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
23237714 CGCACACTTA
1 CGCACACTTA
23237724 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:23237835 original size:174 final size:174
Alignment explanation
Indices: 23237545--23238395 Score: 1585
Period size: 174 Copynumber: 4.9 Consensus size: 174
23237535 AACTCAAGGT
* *
23237545 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
23237610 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
23237675 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
* *
23237719 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
23237784 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
23237849 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
23237893 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
23237958 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
23238023 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
* * *
23238067 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGCCGCACCATTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
23238132 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
23238197 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
23238241 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
23238306 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
23238371 ACTTTAAACTCACACACTTAGTGCC
131 ACTTTAAACTCACACACTTAGTGCC
23238396 TAGCTACATG
Statistics
Matches: 661, Mismatches: 16, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 661 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:23237893 original size:29 final size:29
Alignment explanation
Indices: 23237830--23237897 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
23237820 TAATCAACCG
23237830 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
23237859 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
23237888 CGCACACTTA
1 CGCACACTTA
23237898 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:23238067 original size:29 final size:29
Alignment explanation
Indices: 23238004--23238071 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
23237994 TAATCAACCG
23238004 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
23238033 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
23238062 CGCACACTTA
1 CGCACACTTA
23238072 CCTTTTCCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:23238241 original size:29 final size:29
Alignment explanation
Indices: 23238178--23238245 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
23238168 TAATCAACCA
*
23238178 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
23238207 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
23238236 CGCACACTTA
1 CGCACACTTA
23238246 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:23239158 original size:33 final size:34
Alignment explanation
Indices: 23239121--23239192 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
23239111 GAGTTAGTTT
23239121 ATTAAATTTAATTCAACTCAAATAAGTGTTAG-A
1 ATTAAATTTAATTCAACTCAAATAAGTGTTAGTA
* * * *
23239154 ATTAATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAAATTTAATTCAACTCAAATAAGTGTTAGTA
23239188 ATTAA
1 ATTAA
23239193 TTTGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 28 0.82
34 6 0.18
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (34 bp):
ATTAAATTTAATTCAACTCAAATAAGTGTTAGTA
Found at i:23242649 original size:16 final size:17
Alignment explanation
Indices: 23242630--23242668 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
23242620 GTCCTATATC
23242630 TTTCTTT-AACTTT-TT
1 TTTCTTTAAACTTTATT
23242645 GTTTCTTTAAACTTTATT
1 -TTTCTTTAAACTTTATT
23242663 TTTCTT
1 TTTCTT
23242669 CTTTTCCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 12 0.57
18 2 0.10
ACGTcount: A:0.15, C:0.13, G:0.03, T:0.69
Consensus pattern (17 bp):
TTTCTTTAAACTTTATT
Found at i:23246778 original size:20 final size:20
Alignment explanation
Indices: 23246753--23246797 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
23246743 AATGTGTCTT
23246753 GTCTTAACCGAATTAATTGG
1 GTCTTAACCGAATTAATTGG
** *
23246773 GTCTTAACTTAATTAATTGT
1 GTCTTAACCGAATTAATTGG
23246793 GTCTT
1 GTCTT
23246798 GTTCTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (20 bp):
GTCTTAACCGAATTAATTGG
Found at i:23254402 original size:88 final size:88
Alignment explanation
Indices: 23254253--23254432 Score: 272
Period size: 88 Copynumber: 2.0 Consensus size: 88
23254243 ATAACTCCTT
* * * *
23254253 CCATAAAATCACTTCAATTCAGCTGATTTGAATGTCTTTAATGGCTTAGAAACTACTCTTGATTT
1 CCATAAAATCACTTCAATTCAGCTGATTTGAATGCCTTTAATGGATTAGAAAATACTCTTGAGTT
*
23254318 GTCCTTGGCCAGCTGAATAGACA
66 GTCCTTGGCCAGCTGAATAAACA
* * *
23254341 CCATAAAATCACTTCAATTCAGTTGATTTGAATGCCTTTAGTTGATTA-AAAATGACTCTTGAGT
1 CCATAAAATCACTTCAATTCAGCTGATTTGAATGCCTTTAATGGATTAGAAAAT-ACTCTTGAGT
23254405 TGTCCTTGGCCAGCTGAATAAACA
65 TGTCCTTGGCCAGCTGAATAAACA
23254429 CCAT
1 CCAT
23254433 TTTTTAACCA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
87 4 0.05
88 79 0.95
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (88 bp):
CCATAAAATCACTTCAATTCAGCTGATTTGAATGCCTTTAATGGATTAGAAAATACTCTTGAGTT
GTCCTTGGCCAGCTGAATAAACA
Found at i:23258754 original size:240 final size:240
Alignment explanation
Indices: 23258331--23258810 Score: 879
Period size: 240 Copynumber: 2.0 Consensus size: 240
23258321 TGCTTGAACC
* *
23258331 AAATAACTCCTTCCATAAAATCACTTCAATTCAGTTGATTTGAATGTCTTTAATGGCTTAAAAAT
1 AAATAACTCCTTCCATAAAATCACTTCAATTCAGTTGATTTGAATGCCTTTAATGGATTAAAAAT
* *
23258396 GACTCTTGAGTTGTCCTTGGTCAGCTGAATAGACACCATCTTTTAACCAGCTCCTTAATGACATT
66 GACTCTTGAGTTGTCCTTGGCCAGCTGAATAAACACCATCTTTTAACCAGCTCCTTAATGACATT
23258461 TAAAAGGCTTGATTAAATTCTCTTGAAAGCTCCAAAAAACGGCTGGAACAAGAAGGGTTGTTGTC
131 TAAAAGGCTTGATTAAATTCTCTTGAAAGCTCCAAAAAACGGCTGGAACAAGAAGGGTTGTTGTC
*
23258526 GAATTTTAAAGGGCATAAAATGCTATTTAAAAACTCCTTTAATAA
196 GAATTTTAAAGGGCATAAAATGCTATTTAAAAAATCCTTTAATAA
* *
23258571 AAATAACTCCTTCCATAAAATCACTTCAATTCAGTTGATTTGAATGCCTTTAGTTGATTAAAAAT
1 AAATAACTCCTTCCATAAAATCACTTCAATTCAGTTGATTTGAATGCCTTTAATGGATTAAAAAT
*
23258636 GACTCTTGAGTTGTCCTTGGCCAGCTGAATAAACACCATTTTTTAACCAGCTCCTTAATGACATT
66 GACTCTTGAGTTGTCCTTGGCCAGCTGAATAAACACCATCTTTTAACCAGCTCCTTAATGACATT
23258701 TAAAAGGCTTGATTAAATTCTCTTGAAAGCTCCAAAAAACGGCTGGAACAAGAAGGGTTGTTGTC
131 TAAAAGGCTTGATTAAATTCTCTTGAAAGCTCCAAAAAACGGCTGGAACAAGAAGGGTTGTTGTC
*
23258766 GAATTTTAAAGGGCATAAAATGCTCTTTAAAAAATCCTTTAATAA
196 GAATTTTAAAGGGCATAAAATGCTATTTAAAAAATCCTTTAATAA
23258811 TTTTTAAGCT
Statistics
Matches: 231, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
240 231 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (240 bp):
AAATAACTCCTTCCATAAAATCACTTCAATTCAGTTGATTTGAATGCCTTTAATGGATTAAAAAT
GACTCTTGAGTTGTCCTTGGCCAGCTGAATAAACACCATCTTTTAACCAGCTCCTTAATGACATT
TAAAAGGCTTGATTAAATTCTCTTGAAAGCTCCAAAAAACGGCTGGAACAAGAAGGGTTGTTGTC
GAATTTTAAAGGGCATAAAATGCTATTTAAAAAATCCTTTAATAA
Found at i:23258986 original size:26 final size:26
Alignment explanation
Indices: 23258956--23259038 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 26
23258946 TGAGTTTATT
23258956 AAACACATGAAAACACTTATTAATCA
1 AAACACATGAAAACACTTATTAATCA
* * **
23258982 AAACACA-CATTATTACTTACTT-A--A
1 AAACACATGA-AAACACTTA-TTAATCA
23259006 AAACACATGAAAACACTTATTAATCA
1 AAACACATGAAAACACTTATTAATCA
*
23259032 TAACACA
1 AAACACA
23259039 CATATATGCA
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
23 2 0.05
24 15 0.36
25 2 0.05
26 21 0.50
27 2 0.05
ACGTcount: A:0.52, C:0.20, G:0.02, T:0.25
Consensus pattern (26 bp):
AAACACATGAAAACACTTATTAATCA
Found at i:23259429 original size:22 final size:24
Alignment explanation
Indices: 23259393--23259436 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
23259383 TAATGATGTG
*
23259393 CAAACTATAACATAATTAAAAACA
1 CAAACTATAACATAACTAAAAACA
23259417 CAAACTA-AA-ATAACTAAAAA
1 CAAACTATAACATAACTAAAAA
23259437 TTAATGAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 2 0.11
24 7 0.37
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (24 bp):
CAAACTATAACATAACTAAAAACA
Found at i:23261198 original size:27 final size:27
Alignment explanation
Indices: 23261147--23261198 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
23261137 TTTTGTTCAA
* *
23261147 TCTCAATCTCGTTTTTCTTTTTCTCAC
1 TCTCAATCTCGTTTTTCCTTCTCTCAC
* *
23261174 TCTCACTCTCTTTTTTCCTTCTCTC
1 TCTCAATCTCGTTTTTCCTTCTCTC
23261199 GAGTTCGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.08, C:0.35, G:0.02, T:0.56
Consensus pattern (27 bp):
TCTCAATCTCGTTTTTCCTTCTCTCAC
Found at i:23264417 original size:40 final size:40
Alignment explanation
Indices: 23264101--23264403 Score: 395
Period size: 40 Copynumber: 7.7 Consensus size: 40
23264091 TTGAATGCTG
* * *
23264101 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
23264140 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
23264180 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23264219 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
23264258 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
23264298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23264338 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
23264379 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
23264404 AACGAGGAGC
Statistics
Matches: 245, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 92 0.38
40 143 0.58
41 10 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23264421 original size:120 final size:119
Alignment explanation
Indices: 23264101--23264436 Score: 366
Period size: 119 Copynumber: 2.8 Consensus size: 119
23264091 TTGAATGCTG
* * *
23264101 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
** * * *
23264162 TTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
62 TTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
23264219 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
** * *
23264284 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
66 AACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
23264338 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
* * *
23264402 TGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
64 TGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
23264437 TACGTGATTT
Statistics
Matches: 190, Mismatches: 19, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
117 11 0.06
118 58 0.31
119 60 0.32
120 59 0.31
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
AACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:23271057 original size:13 final size:13
Alignment explanation
Indices: 23271039--23271063 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23271029 CCGAAACTAG
23271039 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
23271052 AAAGAAAAAAAA
1 AAAGAAAAAAAA
23271064 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:23272236 original size:39 final size:41
Alignment explanation
Indices: 23272141--23272324 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
23272131 TTGAATGCTG
*
23272141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
23272180 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
23272220 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
23272259 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
23272299 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23272325 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:23272276 original size:79 final size:81
Alignment explanation
Indices: 23272141--23272324 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
23272131 TTGAATGCTG
23272141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
23272204 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
23272219 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
23272280 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
23272299 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23272325 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:23272346 original size:79 final size:79
Alignment explanation
Indices: 23272193--23272357 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
23272183 GGACTAAGAT
* ** *
23272193 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
23272258 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
23272272 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
23272334 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
23272351 CCGAAGG
1 CCGAAGG
23272358 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:23274640 original size:65 final size:65
Alignment explanation
Indices: 23274559--23275406 Score: 1696
Period size: 65 Copynumber: 13.0 Consensus size: 65
23274549 TAAAACTAAG
23274559 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23274624 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23274689 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23274754 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23274819 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23274884 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23274949 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23275014 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23275079 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23275144 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23275209 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23275274 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23275339 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
1 ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
23275404 ATG
1 ATG
23275407 CAAATTTAAC
Statistics
Matches: 783, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 783 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (65 bp):
ATGAGTTGAATAAATGTCTAGCAACTCATTTATTAAACTAAGATGCTTAAATGCATGGTTTTGAA
Found at i:23275910 original size:19 final size:19
Alignment explanation
Indices: 23275866--23275910 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
23275856 GTTAAAACAC
*
23275866 AAAAGAAAAGAAAAATGAGA
1 AAAAG-AAAGAAAAATGAAA
* *
23275886 AGAAGAAAGAAAAATTAAA
1 AAAAGAAAGAAAAATGAAA
23275905 AAAAGA
1 AAAAGA
23275911 GAGTGAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (19 bp):
AAAAGAAAGAAAAATGAAA
Found at i:23281405 original size:42 final size:42
Alignment explanation
Indices: 23281346--23281427 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
23281336 AATTCAAAGA
*
23281346 GATAAGAACAAGAGTTCAAATGTTTGAATTTCAAATGTTTTG
1 GATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTTG
23281388 GATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
1 GATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
23281428 CACACATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (42 bp):
GATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTTG
Found at i:23302468 original size:13 final size:13
Alignment explanation
Indices: 23302450--23302474 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23302440 TTCGAGAGAT
23302450 TTGTGAGGTTTTG
1 TTGTGAGGTTTTG
23302463 TTGTGAGGTTTT
1 TTGTGAGGTTTT
23302475 ATTTTCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.36, T:0.56
Consensus pattern (13 bp):
TTGTGAGGTTTTG
Found at i:23304248 original size:19 final size:19
Alignment explanation
Indices: 23304226--23304266 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
23304216 ATACAAAAGA
*
23304226 AAAGAAAAATGAAAAAAAT
1 AAAGAAAAATCAAAAAAAT
*
23304245 AAAGAAAATTCAAAAAAAT
1 AAAGAAAAATCAAAAAAAT
23304264 AAA
1 AAA
23304267 ATGAAAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.12
Consensus pattern (19 bp):
AAAGAAAAATCAAAAAAAT
Found at i:23310996 original size:19 final size:21
Alignment explanation
Indices: 23310963--23311010 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
23310953 AGGAAGACAA
23310963 AAAAAGA-AATCAAAAA-A-G
1 AAAAAGAGAATCAAAAAGAGG
*
23310981 AAAAAGAGAATGAAAAAGAGG
1 AAAAAGAGAATCAAAAAGAGG
23311002 AAAAAGAGA
1 AAAAAGAGA
23311011 TTGAGAGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.27
19 8 0.31
20 1 0.04
21 10 0.38
ACGTcount: A:0.73, C:0.02, G:0.21, T:0.04
Consensus pattern (21 bp):
AAAAAGAGAATCAAAAAGAGG
Found at i:23316957 original size:45 final size:45
Alignment explanation
Indices: 23316893--23317112 Score: 332
Period size: 45 Copynumber: 4.9 Consensus size: 45
23316883 ATTTCCTGGC
*
23316893 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAAATCGAAGA
1 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
23316938 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
1 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
* * * *
23316983 TAGCTGATCTTATCTTCCTGTATTGGCAGAGAAGTAGATTGAAGA
1 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
* * *
23317028 TAGTAGATCTTGTCTTCCTGCATTGGCAGTGAAGTAGATCGAAGA
1 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
* ** *
23317073 TAGCAGATCTTGTCTTCCTGTACTAACAGTGAAGTAGATC
1 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
23317113 AAAGGCATCA
Statistics
Matches: 159, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 159 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (45 bp):
TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
Found at i:23319226 original size:31 final size:29
Alignment explanation
Indices: 23319148--23319228 Score: 94
Period size: 31 Copynumber: 2.8 Consensus size: 29
23319138 AATCATTATT
*
23319148 TCTATTTTTATAACTTATATATGTAATCA
1 TCTATTTTTATAACTTATATATATAATCA
* *
23319177 -CTATTTTCATAATCTATATATACATACAT-A
1 TCTATTTTTATAA-CT-TATATATATA-ATCA
23319207 TCTATTTTTATAACTTATATAT
1 TCTATTTTTATAACTTATATAT
23319229 GTACATATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
28 11 0.26
29 8 0.19
30 11 0.26
31 13 0.30
ACGTcount: A:0.36, C:0.12, G:0.01, T:0.51
Consensus pattern (29 bp):
TCTATTTTTATAACTTATATATATAATCA
Found at i:23319256 original size:19 final size:18
Alignment explanation
Indices: 23319234--23319293 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
23319224 TATATGTACA
23319234 TATATATACTTATATTTTT
1 TATATATA-TTATATTTTT
* *
23319253 TATACATATTTTATAATTTTA
1 TAT--ATATATTAT-ATTTTT
23319274 TATATATATCTATATTTTT
1 TATATATAT-TATATTTTT
23319293 T
1 T
23319294 TCATTTTTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
19 14 0.42
20 7 0.21
21 12 0.36
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATATATTATATTTTT
Found at i:23319271 original size:21 final size:20
Alignment explanation
Indices: 23319243--23319291 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
23319233 ATATATATAC
*
23319243 TTATATTTTTTATACATATT
1 TTATATTTTATATACATATT
*
23319263 TTATAATTTTATATATATA-T
1 TTAT-ATTTTATATACATATT
*
23319283 CTATATTTT
1 TTATATTTT
23319292 TTTCATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 5 0.20
20 8 0.32
21 12 0.48
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (20 bp):
TTATATTTTATATACATATT
Found at i:23333971 original size:47 final size:47
Alignment explanation
Indices: 23333749--23335340 Score: 2527
Period size: 47 Copynumber: 33.4 Consensus size: 47
23333739 CAGCCAAGAG
* * *
23333749 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * *
23333796 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * *
23333845 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * *
23333896 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
*
23333947 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGTAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTG-AA
* * * *
23333995 GTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 -AG--TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334045 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334092 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334139 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334186 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334233 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334280 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334327 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334374 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334421 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334468 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334515 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334562 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334609 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334656 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334703 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334750 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334797 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
23334844 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
*
23334891 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * *
23334938 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * *
23334987 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * *
23335036 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGA--CG-TG-ATGAATGTGAA
*
23335087 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * * *
23335134 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * * *
23335181 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * *
23335228 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* * * * * * * * *
23335275 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
* **
23335322 AGTGCATAAATGTGATAAG
1 AGTGTATATGTGTGATAAG
23335341 TCCCGAAAGG
Statistics
Matches: 1489, Mismatches: 36, Indels: 40
0.95 0.02 0.03
Matches are distributed among these distances:
47 1166 0.78
48 4 0.00
49 139 0.09
50 4 0.00
51 172 0.12
53 4 0.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
Found at i:23335515 original size:37 final size:37
Alignment explanation
Indices: 23335459--23335537 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
23335449 CCGAGCTCTA
* * * *
23335459 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
23335496 AAGACCCGATAACTTCGTGTGGAGATTATGTCTAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
23335533 AAGAC
1 AAGAC
23335538 TTCATAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:23342282 original size:18 final size:18
Alignment explanation
Indices: 23342261--23342302 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
23342251 AGGAAGACAT
23342261 AAAAAGA-AATCGAAAAAG
1 AAAAAGAGAAT-GAAAAAG
23342279 AAAAAGAGAATGAAAAAG
1 AAAAAGAGAATGAAAAAG
23342297 AGAAAA
1 A-AAAA
23342303 AAGAGATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.05
Consensus pattern (18 bp):
AAAAAGAGAATGAAAAAG
Found at i:23344105 original size:33 final size:34
Alignment explanation
Indices: 23344068--23344139 Score: 110
Period size: 33 Copynumber: 2.1 Consensus size: 34
23344058 GAGTTAGTTT
23344068 ATTAAATTTAATTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAATTCAGCTCAAATAAGTGTTAGTA
* * *
23344101 ATTAATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAAATTTAATTCAGCTCAAATAAGTGTTAGTA
23344135 ATTAA
1 ATTAA
23344140 TTTGTTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 29 0.83
34 6 0.17
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (34 bp):
ATTAAATTTAATTCAGCTCAAATAAGTGTTAGTA
Found at i:23347598 original size:16 final size:17
Alignment explanation
Indices: 23347579--23347617 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
23347569 GTCCTATATC
23347579 TTTCTTT-AACTTT-TT
1 TTTCTTTAAACTTTATT
23347594 GTTTCTTTAAACTTTATT
1 -TTTCTTTAAACTTTATT
23347612 TTTCTT
1 TTTCTT
23347618 CTTTTCCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 12 0.57
18 2 0.10
ACGTcount: A:0.15, C:0.13, G:0.03, T:0.69
Consensus pattern (17 bp):
TTTCTTTAAACTTTATT
Found at i:23347961 original size:33 final size:33
Alignment explanation
Indices: 23347898--23347963 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
23347888 TTATCAGTAT
* **
23347898 TCTTTGTGTTGTTTAAGTATGACAGGATCGGAA
1 TCTTTATGTTGTTTAAGTATGACAACATCGGAA
*
23347931 TCTTTATGTTGTTTAAGTATGATAACATCGGAA
1 TCTTTATGTTGTTTAAGTATGACAACATCGGAA
23347964 GATCGTATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (33 bp):
TCTTTATGTTGTTTAAGTATGACAACATCGGAA
Found at i:23350800 original size:38 final size:38
Alignment explanation
Indices: 23350740--23350815 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
23350730 GTTTTGTAAC
23350740 AGGGAAAGAGGCCCGTTGCATATTTCAGTGAGAAACTT
1 AGGGAAAGAGGCCCGTTGCATATTTCAGTGAGAAACTT
* *
23350778 AGGGAAAGAGGCCTGTTTCATATTTCAGTGAGAAACTT
1 AGGGAAAGAGGCCCGTTGCATATTTCAGTGAGAAACTT
23350816 GGCGGAGCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (38 bp):
AGGGAAAGAGGCCCGTTGCATATTTCAGTGAGAAACTT
Found at i:23351756 original size:20 final size:20
Alignment explanation
Indices: 23351731--23351775 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
23351721 AATGTGTCTT
23351731 GTCTTAACCGAATTAATTGG
1 GTCTTAACCGAATTAATTGG
** *
23351751 GTCTTAACTTAATTAATTGT
1 GTCTTAACCGAATTAATTGG
23351771 GTCTT
1 GTCTT
23351776 GTTCTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (20 bp):
GTCTTAACCGAATTAATTGG
Found at i:23360816 original size:16 final size:16
Alignment explanation
Indices: 23360792--23360830 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
23360782 AATGGCTTCA
*
23360792 AAAAAAGATAATAAAC
1 AAAATAGATAATAAAC
23360808 AAAATAGATAATAAAC
1 AAAATAGATAATAAAC
23360824 AATAATA
1 AA-AATA
23360831 AATTAATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (16 bp):
AAAATAGATAATAAAC
Found at i:23362079 original size:22 final size:24
Alignment explanation
Indices: 23362043--23362086 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
23362033 TAATGTTGTG
*
23362043 CAAACTATAACATAATTAAAAACA
1 CAAACTATAACATAACTAAAAACA
23362067 CAAACTA-AA-ATAACTAAAAA
1 CAAACTATAACATAACTAAAAA
23362087 TTAATGAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 2 0.11
24 7 0.37
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (24 bp):
CAAACTATAACATAACTAAAAACA
Found at i:23363851 original size:27 final size:27
Alignment explanation
Indices: 23363800--23363851 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
23363790 TTTTGTTCAA
* *
23363800 TCTCAATCTCGTTTTTCTTTTTCTCAC
1 TCTCAATCTCGTTTTTCCTTCTCTCAC
* *
23363827 TCTCACTCTCTTTTTTCCTTCTCTC
1 TCTCAATCTCGTTTTTCCTTCTCTC
23363852 GAGTTCGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.08, C:0.35, G:0.02, T:0.56
Consensus pattern (27 bp):
TCTCAATCTCGTTTTTCCTTCTCTCAC
Found at i:23364819 original size:14 final size:15
Alignment explanation
Indices: 23364775--23364823 Score: 59
Period size: 13 Copynumber: 3.5 Consensus size: 15
23364765 CAAAACTAGC
23364775 TTTTTTTTCAC--AA
1 TTTTTTTTCACGAAA
23364788 TTTTTTTTCACGAAA
1 TTTTTTTTCACGAAA
* *
23364803 TTTTTTTT-TCGAGA
1 TTTTTTTTCACGAAA
23364817 TTTTTTT
1 TTTTTTT
23364824 CCAGTAACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
13 11 0.34
14 11 0.34
15 10 0.31
ACGTcount: A:0.18, C:0.10, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTTTTTCACGAAA
Found at i:23366626 original size:19 final size:19
Alignment explanation
Indices: 23366582--23366626 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
23366572 GTTAAAACAC
*
23366582 AAAAGAAAAGAAAAATGAGA
1 AAAAG-AAAGAAAAATGAAA
* *
23366602 AGAAGAAAGAAAAATTAAA
1 AAAAGAAAGAAAAATGAAA
23366621 AAAAGA
1 AAAAGA
23366627 GAGTGAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (19 bp):
AAAAGAAAGAAAAATGAAA
Found at i:23372152 original size:42 final size:42
Alignment explanation
Indices: 23372092--23372173 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
23372082 AATTCAAAGA
23372092 GATAAGAACAAGAATTCAAATGTTTGAATTTCAAACGTTTTG
1 GATAAGAACAAGAATTCAAATGTTTGAATTTCAAACGTTTTG
*
23372134 GATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
1 GATAAGAACAAGAATTCAAATGTTTGAATTTCAAACGTTT
23372174 CACACATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (42 bp):
GATAAGAACAAGAATTCAAATGTTTGAATTTCAAACGTTTTG
Found at i:23375849 original size:32 final size:31
Alignment explanation
Indices: 23375804--23375899 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
23375794 CTTAGATAAT
23375804 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
23375835 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
23375867 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
23375898 TT
1 TT
23375900 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:23379820 original size:31 final size:31
Alignment explanation
Indices: 23379784--23379845 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
23379774 AGATAATTTT
23379784 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
23379815 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
23379846 TAATTTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:23380195 original size:30 final size:27
Alignment explanation
Indices: 23380144--23380203 Score: 66
Period size: 30 Copynumber: 2.1 Consensus size: 27
23380134 AAATCTATCC
*
23380144 TTTTATTATTATTATTATTATTTAACTAA
1 TTTTATTATTATCATTATTATTT--CTAA
* *
23380173 TTTTATTTATTCTCATTTTTATTTCTAA
1 TTTTA-TTATTATCATTATTATTTCTAA
23380201 TTT
1 TTT
23380204 GTGTTTCTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 7 0.26
29 5 0.19
30 15 0.56
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTATTATTATCATTATTATTTCTAA
Found at i:23386043 original size:27 final size:27
Alignment explanation
Indices: 23386012--23386189 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23386002 TAAATTGTAC
23386012 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23386039 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23386065 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23386093 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23386121 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23386148 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23386175 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23386190 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23386126 original size:82 final size:81
Alignment explanation
Indices: 23386013--23386168 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23386003 AAATTGTACA
* *
23386013 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23386077 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23386094 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23386159 TGCGAGTTGA
65 TGCGAATTGA
23386169 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23386180 original size:82 final size:81
Alignment explanation
Indices: 23386009--23386189 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
23385999 GATTAAATTG
* *
23386009 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23386074 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23386090 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23386154 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23386172 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23386190 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23393658 original size:27 final size:27
Alignment explanation
Indices: 23393627--23393804 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23393617 TAAATTGTAC
23393627 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23393654 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23393680 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23393708 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23393736 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23393763 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23393790 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23393805 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23393741 original size:82 final size:81
Alignment explanation
Indices: 23393628--23393783 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23393618 AAATTGTACA
* *
23393628 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23393692 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23393709 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23393774 TGCGAGTTGA
65 TGCGAATTGA
23393784 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23393795 original size:82 final size:81
Alignment explanation
Indices: 23393624--23393804 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
23393614 GATTAAATTG
* *
23393624 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23393689 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23393705 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23393769 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23393787 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23393805 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23398863 original size:77 final size:76
Alignment explanation
Indices: 23398768--23398920 Score: 270
Period size: 77 Copynumber: 2.0 Consensus size: 76
23398758 AAAAAAATTT
* *
23398768 CGATATAAAAAAAGTGTTTCGAGTTTGTAAGTTTGGTATTCTCTTCTATTCATCTTCTAAGTCAC
1 CGATATAAAAAAAGTGTTTCGAGTTTGTAAGTTTGGCATTCTCTTCTATTCATCTTCTAAGCCAC
*
23398833 ACTTCGCCTAA
66 ACTTAGCCTAA
23398844 CGATATAAAAAAAAGTGTTTCGAGTTTGTAAGTTTGGCATTCTCTTCTATTCATCTTCTAAGCCA
1 CGATAT-AAAAAAAGTGTTTCGAGTTTGTAAGTTTGGCATTCTCTTCTATTCATCTTCTAAGCCA
23398909 CACTTAGCCTAA
65 CACTTAGCCTAA
23398921 AGCCTTTCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
76 6 0.08
77 67 0.92
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (76 bp):
CGATATAAAAAAAGTGTTTCGAGTTTGTAAGTTTGGCATTCTCTTCTATTCATCTTCTAAGCCAC
ACTTAGCCTAA
Found at i:23400936 original size:20 final size:21
Alignment explanation
Indices: 23400911--23400964 Score: 78
Period size: 19 Copynumber: 2.7 Consensus size: 21
23400901 GGGAAAATAC
23400911 AAAAGAAAAGAAAAATT-AAA
1 AAAAGAAAAGAAAAATTCAAA
23400931 AAAAG-AAAG-AAAATTCAAA
1 AAAAGAAAAGAAAAATTCAAA
23400950 AAAAGAAAATGAAAA
1 AAAAGAAAA-GAAAA
23400965 GAAAGAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 6 0.20
19 12 0.40
20 8 0.27
21 1 0.03
22 3 0.10
ACGTcount: A:0.78, C:0.02, G:0.11, T:0.09
Consensus pattern (21 bp):
AAAAGAAAAGAAAAATTCAAA
Found at i:23400969 original size:15 final size:15
Alignment explanation
Indices: 23400931--23400996 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
23400921 AAAAATTAAA
*
23400931 AAAAGAAAGAAAATTC
1 AAAAGAAAGAAAA-TG
23400947 AAAA-AAAGAAAATG
1 AAAAGAAAGAAAATG
*
23400961 AAAAGAAAG-AGA-G
1 AAAAGAAAGAAAATG
*
23400974 AAAAGAAA-AAGATG
1 AAAAGAAAGAAAATG
23400988 AAAAAGAAA
1 -AAAAGAAA
23400997 AAGTGAGTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
13 12 0.27
14 8 0.18
15 20 0.45
16 4 0.09
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (15 bp):
AAAAGAAAGAAAATG
Found at i:23400975 original size:19 final size:19
Alignment explanation
Indices: 23400890--23400982 Score: 58
Period size: 18 Copynumber: 5.2 Consensus size: 19
23400880 AAATGAGAGA
* *
23400890 AAAAGAAAAGAGGGAAAATAC
1 AAAAG-AAAGAGAGAAAAT-G
*
23400911 AAAAGAAA-AGA-AAAATT
1 AAAAGAAAGAGAGAAAATG
*
23400928 AAAA-AAAGAAAGAAAAT-
1 AAAAGAAAGAGAGAAAATG
**
23400945 TCAA-AAA-A-AGAAAATG
1 AAAAGAAAGAGAGAAAATG
23400961 AAAAGAAAGAGAGAAAA-G
1 AAAAGAAAGAGAGAAAATG
23400979 AAAA
1 AAAA
23400983 AGATGAAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
15 7 0.12
16 6 0.10
17 14 0.24
18 16 0.27
19 8 0.14
20 3 0.05
21 5 0.08
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.06
Consensus pattern (19 bp):
AAAAGAAAGAGAGAAAATG
Found at i:23400976 original size:13 final size:14
Alignment explanation
Indices: 23400958--23400999 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
23400948 AAAAAAGAAA
*
23400958 ATGAAAAGAAAGAG
1 ATGAAAAGAAAAAG
23400972 A-GAAAAGAAAAAG
1 ATGAAAAGAAAAAG
23400985 ATGAAAAAGAAAAAG
1 ATG-AAAAGAAAAAG
23401000 TGAGTGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 12 0.48
14 2 0.08
15 11 0.44
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (14 bp):
ATGAAAAGAAAAAG
Found at i:23412773 original size:318 final size:317
Alignment explanation
Indices: 23412181--23412984 Score: 1272
Period size: 318 Copynumber: 2.5 Consensus size: 317
23412171 CCAGTTGCTC
*
23412181 ATCTCTCTT-TTTTTGATGTAGGTGACGATTCGAGGACGAATCACCTTGAAGAAAGGGGGGATGA
1 ATCTCT-TTCTTTTTGATGTAGGTGACGATTCGAGGACGAATCACCTTGAAGAGAGGGGGGATGA
* * *
23412245 TGTGAGCTCGCCCATCAAGCCTAATGACGAACCTATGTAGCTACCATTAGGGCCAATCACTCGAG
65 TGTGAGCTCGCCCATCAAGCCTAATGACGAACCTATGGAGCTGCCATCAGGGCCAATCACTCGAG
** *
23412310 CCCGTGCCAAGAGATTTCAAGAAGTCATGGGTAGCAACATGCATAAAGAACGGTTTCTCAAGCAA
130 -CCGTGCCAAGAGATTTCAAGAAGTCATGGGTAGCAACATGCATAAAGAACAATTTCTCAAGAAA
* * *
23412375 AGGAAATCCAAGCTTCAACCAAGGGGTGATGGTCCATTCCATGTATTGGAACGGATCAACGACAA
194 AGGAAATCCAAGCTTCAACAAAGGGGTGATGGTCCATTCCAAGTATTGGAACGGATCAACAACAA
* *
23412440 CGTCTAAACAATCGATTTACCAGGTGAGTATGGAGTGAGTGCAAGTTTTAACGTTCCTG
259 CGTCTAAACAATCGATTTACCAGGTGAGTATGGAGTGAGCGCAAGTTTTAACATTCCTG
* *
23412499 ATCTCTTTCTTTTTGATGTAGGTGACGATTTGTGGACGAATCACCTTGAAGAGAGGGGGGATGAT
1 ATCTCTTTCTTTTTGATGTAGGTGACGATTCGAGGACGAATCACCTTGAAGAGAGGGGGGATGAT
23412564 GTGAGCTCGCCCATCAAGCCTAATGACGAACCTATGGAGCTGCCATCAGGGCCAATCACTCGAGC
66 GTGAGCTCGCCCATCAAGCCTAATGACGAACCTATGGAGCTGCCATCAGGGCCAATCACTCGAGC
* * *
23412629 TCGTGCCAAGAGATTTCAAGAAGTCATGGGTAGCCACATGCGTAAAGAACAATTTCTCGAGAAAA
131 -CGTGCCAAGAGATTTCAAGAAGTCATGGGTAGCAACATGCATAAAGAACAATTTCTCAAGAAAA
*
23412694 GGAAATCCAAGCTTCAACAAAGGGGTGATGGTCCATTCCAAGTATTGGAACGGATTAACAACAAC
195 GGAAATCCAAGCTTCAACAAAGGGGTGATGGTCCATTCCAAGTATTGGAACGGATCAACAACAAC
* *
23412759 GTCTTCAA-AATCGATTTACCAGGTGAGTATGGAGTGAGCGCAAGTTTTAACATTGCTG
260 GTC-TAAACAATCGATTTACCAGGTGAGTATGGAGTGAGCGCAAGTTTTAACATTCCTG
* * *
23412817 ATCTCTCTCTTTTTGATGTAGCTGACGATTCGAGGACGAATCACCTTGAAGAGAGGGAGGATGAT
1 ATCTCTTTCTTTTTGATGTAGGTGACGATTCGAGGACGAATCACCTTGAAGAGAGGGGGGATGAT
* * * *
23412882 GTGAGCTCGCCCATCAAGCCTAATGACGATCCTATGGAGCTG-AATCAAGGCTAATCACTCGAGC
66 GTGAGCTCGCCCATCAAGCCTAATGACGAACCTATGGAGCTGCCATCAGGGCCAATCACTCGAGC
* * *
23412946 CTGTGCCAAGAGATTTCAAAAAGTCGTGGGTAGCTACAT
131 C-GTGCCAAGAGATTTCAAGAAGTCATGGGTAGCAACAT
23412985 TGCTCGAGTT
Statistics
Matches: 450, Mismatches: 32, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
316 1 0.00
317 56 0.12
318 390 0.87
319 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (317 bp):
ATCTCTTTCTTTTTGATGTAGGTGACGATTCGAGGACGAATCACCTTGAAGAGAGGGGGGATGAT
GTGAGCTCGCCCATCAAGCCTAATGACGAACCTATGGAGCTGCCATCAGGGCCAATCACTCGAGC
CGTGCCAAGAGATTTCAAGAAGTCATGGGTAGCAACATGCATAAAGAACAATTTCTCAAGAAAAG
GAAATCCAAGCTTCAACAAAGGGGTGATGGTCCATTCCAAGTATTGGAACGGATCAACAACAACG
TCTAAACAATCGATTTACCAGGTGAGTATGGAGTGAGCGCAAGTTTTAACATTCCTG
Found at i:23417319 original size:40 final size:40
Alignment explanation
Indices: 23417275--23417536 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
23417265 GCTCCTCGTT
* *
23417275 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
23417315 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23417355 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23417394 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23417433 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
23417472 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
23417513 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23417537 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:23424368 original size:16 final size:16
Alignment explanation
Indices: 23424313--23424371 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
23424303 GCTTTTACTT
23424313 GATTTCTTTCTTCACTC
1 GATTTCTTTC-TCACTC
23424330 G-TTTCTTT-TGCAGACTC
1 GATTTCTTTCT-C--ACTC
**
23424347 TTTTTCTTTCTCACTC
1 GATTTCTTTCTCACTC
23424363 GATTTCTTT
1 GATTTCTTT
23424372 TCAAACTCTC
Statistics
Matches: 34, Mismatches: 3, Indels: 11
0.71 0.06 0.23
Matches are distributed among these distances:
14 1 0.03
15 1 0.03
16 18 0.53
17 5 0.15
18 8 0.24
19 1 0.03
ACGTcount: A:0.10, C:0.25, G:0.08, T:0.56
Consensus pattern (16 bp):
GATTTCTTTCTCACTC
Found at i:23424380 original size:33 final size:34
Alignment explanation
Indices: 23424315--23424388 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
23424305 TTTTACTTGA
* *
23424315 TTTCTTTCTTCACTCGTTTCTTTTGCAGACTCTT
1 TTTCTTTCTTCACTCGTTTCTTTTGCAAACTCTC
23424349 TTTCTTTC-TCACTCGATTTCTTTT-CAAACTCTC
1 TTTCTTTCTTCACTCG-TTTCTTTTGCAAACTCTC
23424382 TTTCTTT
1 TTTCTTT
23424389 TTCTTTTTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 21 0.57
34 16 0.43
ACGTcount: A:0.11, C:0.27, G:0.05, T:0.57
Consensus pattern (34 bp):
TTTCTTTCTTCACTCGTTTCTTTTGCAAACTCTC
Found at i:23424424 original size:6 final size:6
Alignment explanation
Indices: 23424382--23424411 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
23424372 TCAAACTCTC
23424382 TTTCTT TTTCTT TTTCTT TTTC-T TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT T
23424412 GAATTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:23429144 original size:18 final size:18
Alignment explanation
Indices: 23429102--23429138 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23429092 TTTCACTTAC
*
23429102 TTCTTTTTCAATTTCTTT
1 TTCTTTTTCAATCTCTTT
*
23429120 TTCTTTTTCACTCTCTTT
1 TTCTTTTTCAATCTCTTT
23429138 T
1 T
23429139 GTTTTTGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.22, G:0.00, T:0.70
Consensus pattern (18 bp):
TTCTTTTTCAATCTCTTT
Found at i:23431163 original size:12 final size:12
Alignment explanation
Indices: 23431146--23431190 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
23431136 AAATGGAAAT
*
23431146 AATTTTTTTTTG
1 AATTTTTTTTTA
23431158 AATTTTTTTTTCA
1 AATTTTTTTTT-A
*
23431171 AA-TTTTTTTCA
1 AATTTTTTTTTA
23431182 AATTTTTTT
1 AATTTTTTT
23431191 CGAAGAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 3 0.10
12 24 0.83
13 2 0.07
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (12 bp):
AATTTTTTTTTA
Found at i:23431166 original size:13 final size:13
Alignment explanation
Indices: 23431146--23431190 Score: 60
Period size: 11 Copynumber: 3.7 Consensus size: 13
23431136 AAATGGAAAT
*
23431146 AATTTTTTTTT-G
1 AATTTTTTTTTCA
23431158 AATTTTTTTTTCA
1 AATTTTTTTTTCA
23431171 AA--TTTTTTTCA
1 AATTTTTTTTTCA
23431182 AATTTTTTT
1 AATTTTTTT
23431191 CGAAGAAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 11 0.38
12 11 0.38
13 7 0.24
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (13 bp):
AATTTTTTTTTCA
Found at i:23433787 original size:20 final size:20
Alignment explanation
Indices: 23433753--23433809 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
23433743 NNNNNNNNTT
23433753 CAGCTCACT-GAGCTCAAGC
1 CAGCTCACTCGAGCTCAAGC
* *
23433772 CAGCTCATTCGAGCTCAAGT
1 CAGCTCACTCGAGCTCAAGC
* *
23433792 TAGCTCACACGAGCTCAA
1 CAGCTCACTCGAGCTCAA
23433810 TTCAGCTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 8 0.25
20 24 0.75
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.19
Consensus pattern (20 bp):
CAGCTCACTCGAGCTCAAGC
Found at i:23433816 original size:20 final size:19
Alignment explanation
Indices: 23433751--23433816 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
23433741 NNNNNNNNNN
*
23433751 TTCAGCTCACTGAGCTCAA
1 TTCAGCTCACCGAGCTCAA
** *
23433770 GCCAGCTCATTCGAGCTCAA
1 TTCAGCTCA-CCGAGCTCAA
23433790 GTT-AGCTCACACGAGCTCAA
1 -TTCAGCTCAC-CGAGCTCAA
23433810 TTCAGCT
1 TTCAGCT
23433817 TATTGAGCTC
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
19 9 0.25
20 27 0.75
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (19 bp):
TTCAGCTCACCGAGCTCAA
Found at i:23438747 original size:12 final size:12
Alignment explanation
Indices: 23438730--23438764 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
23438720 TAATTGAAAG
23438730 AAAAAAATTCAA
1 AAAAAAATTCAA
*
23438742 AAAAAAA-TAAA
1 AAAAAAATTCAA
23438753 AAAAAAATTCAA
1 AAAAAAATTCAA
23438765 TTTCTCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:23461126 original size:16 final size:16
Alignment explanation
Indices: 23461105--23461155 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
23461095 TTTCTAGTAT
*
23461105 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
*
23461121 TTTATTTCCTAGCGTA
1 TTTATTTACTAGCGTA
*
23461137 TTTATTTACTACCGTA
1 TTTATTTACTAGCGTA
23461153 TTT
1 TTT
23461156 GCTCTTTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:23466331 original size:21 final size:21
Alignment explanation
Indices: 23466297--23466337 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23466287 AAAATACAAG
*
23466297 TGAAAAAGAAGAAAATGAAAA
1 TGAAAAAGAAGAAAAGGAAAA
**
23466318 TGAAAAAGGCGAAAAGGAAA
1 TGAAAAAGAAGAAAAGGAAA
23466338 GCGAGAGAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.66, C:0.02, G:0.24, T:0.07
Consensus pattern (21 bp):
TGAAAAAGAAGAAAAGGAAAA
Found at i:23474003 original size:14 final size:14
Alignment explanation
Indices: 23473984--23474010 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23473974 TTCGAGAGAT
23473984 TTGTGAGGTTTTTG
1 TTGTGAGGTTTTTG
23473998 TTGTGAGGTTTTT
1 TTGTGAGGTTTTT
23474011 ATTTTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.33, T:0.59
Consensus pattern (14 bp):
TTGTGAGGTTTTTG
Found at i:23475763 original size:24 final size:23
Alignment explanation
Indices: 23475731--23475781 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
23475721 AAATGAGAGA
*
23475731 AAAAGAAAA-GAGTGAAAACAAAG
1 AAAAGAAAATGAG-AAAAACAAAG
*
23475754 AAAAGAAAAATGAGAAAAAGAAAG
1 AAAAG-AAAATGAGAAAAACAAAG
23475778 AAAA
1 AAAA
23475782 TCTGAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.21
24 16 0.67
25 3 0.12
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.04
Consensus pattern (23 bp):
AAAAGAAAATGAGAAAAACAAAG
Found at i:23475791 original size:20 final size:20
Alignment explanation
Indices: 23475731--23475791 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 20
23475721 AAATGAGAGA
23475731 AAAAGAAAAGAGTGAAAACAAAG
1 AAAAGAAAA-A-TGAAAA-AAAG
*
23475754 AAAAGAAAAATGAGAAAAAG
1 AAAAGAAAAATGAAAAAAAG
*
23475774 -AAAGAAAATCTGAAAAAA
1 AAAAGAAAA-ATGAAAAAA
23475792 GAGAGTGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 8 0.24
20 11 0.32
21 5 0.15
22 1 0.03
23 9 0.26
ACGTcount: A:0.72, C:0.03, G:0.18, T:0.07
Consensus pattern (20 bp):
AAAAGAAAAATGAAAAAAAG
Found at i:23480063 original size:6 final size:6
Alignment explanation
Indices: 23480052--23480078 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23480042 TCCATTCCTT
23480052 ACCTAA ACCTAA ACCTAA ACCTAA ACC
1 ACCTAA ACCTAA ACCTAA ACCTAA ACC
23480079 GAATTTGACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (6 bp):
ACCTAA
Found at i:23483771 original size:24 final size:24
Alignment explanation
Indices: 23483739--23483801 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 24
23483729 CCTTTTTGAG
23483739 CCATTTCGTACCAAAAATCCC-ATA
1 CCATTTCGTACCAAAAA-CCCAATA
* *
23483763 CCATTTCGTACC-AATACCCAATT
1 CCATTTCGTACCAAAAACCCAATA
*
23483786 CCAATTCGTACCAAAA
1 CCATTTCGTACCAAAA
23483802 CCAAAATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 3 0.09
23 16 0.48
24 14 0.42
ACGTcount: A:0.37, C:0.33, G:0.05, T:0.25
Consensus pattern (24 bp):
CCATTTCGTACCAAAAACCCAATA
Found at i:23490394 original size:13 final size:12
Alignment explanation
Indices: 23490362--23490393 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
23490352 ACGAGATTGT
23490362 AAAAAAAATTCG
1 AAAAAAAATTCG
*
23490374 AAAAAAAATTTG
1 AAAAAAAATTCG
23490386 AAAAAAAA
1 AAAAAAAA
23490394 AATTATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:23492472 original size:14 final size:14
Alignment explanation
Indices: 23492453--23492480 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23492443 TCTATTGAGC
23492453 GAGAAAAACAAAAA
1 GAGAAAAACAAAAA
23492467 GAGAAAAACAAAAA
1 GAGAAAAACAAAAA
23492481 CAGTGAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (14 bp):
GAGAAAAACAAAAA
Found at i:23496950 original size:18 final size:17
Alignment explanation
Indices: 23496927--23497030 Score: 52
Period size: 18 Copynumber: 5.8 Consensus size: 17
23496917 AACAAGTGAG
23496927 GAAAAAGAAAAAGAGAAT
1 GAAAAAGAAAAAGA-AAT
*
23496945 GAAAAAGAGCAAAAAGAGATT
1 G-AAAA-AG-AAAAAGA-AAT
* **
23496966 GAGAGTGAAAAAGAAATT
1 GAAAAAGAAAAAGAAA-T
*
23496984 GAAGAAAG-AAGAGAAAAT
1 GAA-AAAGAAAAAG-AAAT
**
23497002 GAATTAGAAAAAGAAAT
1 GAAAAAGAAAAAGAAAT
23497019 --AAAAGAAAAAGA
1 GAAAAAGAAAAAGA
23497031 CGTGGAAAGG
Statistics
Matches: 65, Mismatches: 14, Indels: 17
0.68 0.15 0.18
Matches are distributed among these distances:
15 10 0.15
17 7 0.11
18 23 0.35
19 10 0.15
20 4 0.06
21 11 0.17
ACGTcount: A:0.66, C:0.01, G:0.23, T:0.10
Consensus pattern (17 bp):
GAAAAAGAAAAAGAAAT
Found at i:23501447 original size:21 final size:20
Alignment explanation
Indices: 23501387--23501448 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 20
23501377 AAGAAATAAA
*
23501387 AGAAAAAGAACAAGAAA-T-
1 AGAAAAAGAAAAAGAAATTG
* * * *
23501405 CGAAAAAGAAAATGAGAGTG
1 AGAAAAAGAAAAAGAAATTG
23501425 AGAAAAAGAAAAAAGAAATTG
1 AGAAAAAG-AAAAAGAAATTG
23501446 AGA
1 AGA
23501449 TTGAAAAAGG
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
18 13 0.39
19 1 0.03
20 7 0.21
21 12 0.36
ACGTcount: A:0.66, C:0.03, G:0.23, T:0.08
Consensus pattern (20 bp):
AGAAAAAGAAAAAGAAATTG
Found at i:23503434 original size:20 final size:21
Alignment explanation
Indices: 23503411--23503456 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
23503401 TAAATAAAAC
23503411 AAGACAC-AATTAATTAAGTT
1 AAGACACTAATTAATTAAGTT
**
23503431 AAGAC-CTAATTAATTCGGTT
1 AAGACACTAATTAATTAAGTT
23503451 AAGACA
1 AAGACA
23503457 AGACACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (21 bp):
AAGACACTAATTAATTAAGTT
Done.