Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 79 of 126
Found at i:23837352 original size:77 final size:76
Alignment explanation
Indices: 23837132--23837416 Score: 292
Period size: 78 Copynumber: 3.7 Consensus size: 76
23837122 GATTGTATTA
* * * *
23837132 TGTTTCAAACAAAAATTCAAATGAACAATCCTATTTTAGGA-TTTATTCCTACCGTTTTAACAGG
1 TGTTTCAAACAAAAATACAATTGAACAATCCTGTTTCAGGATTTTATTCCT---GTTTTAACAGG
23837196 ATTTGTTTAATTTT
63 ATTTGTTTAATTTT
* * *
23837210 TGTTTCAAACAGAAAATA-AATTGAACAATCCTGTTTCAAGATTTTATTCTTGCCATTTAACAGG
1 TGTTTCAAACA-AAAATACAATTGAACAATCCTGTTTCAGGATTTTATTCCTG--TTTTAACAGG
*
23837274 ATTTGTTTGATTTT
63 ATTTGTTTAATTTT
** *
23837288 TGTTTCAAACAAAAA-ACAATTGAACAATTTTGTTTCAGGATTTTATTCCTGTTGCTTAATAGGA
1 TGTTTCAAACAAAAATACAATTGAACAATCCTGTTTCAGGATTTTATTCCTGTT--TTAACAGGA
*
23837352 TTTGTTCAATTTTTT
64 TTTGTTTAA--TTTT
* * **
23837367 TGTTTCAAACAGAAAT-CAATTGAATAATATTGTTTCAGGATTCTT-TTCCT
1 TGTTTCAAACAAAAATACAATTGAACAATCCTGTTTCAGGATT-TTATTCCT
23837417 ACTGCTCAAC
Statistics
Matches: 177, Mismatches: 19, Indels: 21
0.82 0.09 0.10
Matches are distributed among these distances:
75 1 0.01
76 2 0.01
77 49 0.28
78 63 0.36
79 60 0.34
80 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (76 bp):
TGTTTCAAACAAAAATACAATTGAACAATCCTGTTTCAGGATTTTATTCCTGTTTTAACAGGATT
TGTTTAATTTT
Found at i:23837428 original size:156 final size:154
Alignment explanation
Indices: 23837132--23837433 Score: 324
Period size: 156 Copynumber: 1.9 Consensus size: 154
23837122 GATTGTATTA
* *
23837132 TGTTTCAAACAAAAATTCAAATGAACAATCCTATTTTAGGATTTATTCCTACCGTTTTAACAGGA
1 TGTTTCAAACAAAAATACAAATGAACAATCCTATTTCAGGATTTATTCCT--CGTTTTAACAGGA
* * * *
23837197 TTTGTTTAATTTTTGTTTCAAACAGAAAATAAATTGAACAATCCTGTTTCAAGATTTTATTCTTG
64 TTTGTTCAATTTTTGTTTCAAACAGAAAATAAATTGAACAATACTGTTTCAAGATTTTATTCCTA
* * *
23837262 CCATTTAACAGGATTTGTTTGATTTT
129 CCACTCAACAGAATTTGTTTGATTTT
* ** * *
23837288 TGTTTCAAACAAAAA-ACAATTGAACAATTTTGTTTCAGGATTTTATTCCT-GTTGCTTAATAGG
1 TGTTTCAAACAAAAATACAAATGAACAATCCTATTTCAGGA-TTTATTCCTCGTT--TTAACAGG
* * * *
23837351 ATTTGTTCAATTTTTTTGTTTCAAACAG-AAATCAATTGAATAATATTGTTTCAGGATTCTT-TT
63 ATTTGTTCAA--TTTTTGTTTCAAACAGAAAATAAATTGAACAATACTGTTTCAAGATT-TTATT
**
23837414 CCTACTGCTCAACAGAATTT
125 CCTACCACTCAACAGAATTT
23837434 ATTCAATTTC
Statistics
Matches: 120, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
153 3 0.03
155 35 0.29
156 64 0.53
157 18 0.15
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (154 bp):
TGTTTCAAACAAAAATACAAATGAACAATCCTATTTCAGGATTTATTCCTCGTTTTAACAGGATT
TGTTCAATTTTTGTTTCAAACAGAAAATAAATTGAACAATACTGTTTCAAGATTTTATTCCTACC
ACTCAACAGAATTTGTTTGATTTT
Found at i:23837439 original size:79 final size:79
Alignment explanation
Indices: 23837132--23837442 Score: 213
Period size: 79 Copynumber: 4.0 Consensus size: 79
23837122 GATTGTATTA
* * ** * * * * * *
23837132 TGTTTCAAACAAAAATTCAAATGAACAATCCTATTTTAGGA-TTTATTCCTACCGTTTTAACAGG
1 TGTTTCAAACAAAAA-ACAATTGAACAATATTGTTTCAGGATTTTATTCCTACTG-CTCAACAGA
* *
23837196 ATTTGTTTAA--TTTT
64 ATTTATTCAATTTTTT
** * * * *** * *
23837210 TGTTTCAAACAGAAAATA-AATTGAACAATCCTGTTTCAAGATTTTATTCTTGCCATTTAACAGG
1 TGTTTCAAACA-AAAA-ACAATTGAACAATATTGTTTCAGGATTTTATTCCTACTGCTCAACAGA
* **
23837274 ATTTGTTTGA--TTTT
64 ATTTATTCAATTTTTT
* ** * * *
23837288 TGTTTCAAACAAAAAACAATTGAACAATTTTGTTTCAGGATTTTATTCCTGTTGCTTAATAGGAT
1 TGTTTCAAACAAAAAACAATTGAACAATATTGTTTCAGGATTTTATTCCTACTGCTCAACAGAAT
*
23837353 TTGTTCAATTTTTT
66 TTATTCAATTTTTT
* * *
23837367 TGTTTCAAACAGAAATCAATTGAATAATATTGTTTCAGGATTCTT-TTCCTACTGCTCAACAGAA
1 TGTTTCAAACAAAAAACAATTGAACAATATTGTTTCAGGATT-TTATTCCTACTGCTCAACAGAA
23837431 TTTATTCAATTT
65 TTTATTCAATTT
23837443 CTATTGTTAA
Statistics
Matches: 197, Mismatches: 30, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
76 1 0.01
77 49 0.25
78 63 0.32
79 82 0.42
80 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.43
Consensus pattern (79 bp):
TGTTTCAAACAAAAAACAATTGAACAATATTGTTTCAGGATTTTATTCCTACTGCTCAACAGAAT
TTATTCAATTTTTT
Found at i:23837454 original size:27 final size:27
Alignment explanation
Indices: 23837424--23837484 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
23837414 CCTACTGCTC
*
23837424 AACAGAATTTATTCAATTTCTATTGTT
1 AACAAAATTTATTCAATTTCTATTGTT
* *
23837451 AACAAAATTTATTCGATTTCTGTTGTT
1 AACAAAATTTATTCAATTTCTATTGTT
*
23837478 ACCAAAA
1 AACAAAA
23837485 ATTGATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.43
Consensus pattern (27 bp):
AACAAAATTTATTCAATTTCTATTGTT
Found at i:23849453 original size:18 final size:19
Alignment explanation
Indices: 23849427--23849465 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
23849417 GTCGAGGACA
23849427 AAGTAATATTT-TTTAATT
1 AAGTAATATTTGTTTAATT
* *
23849445 AAGTTATATTTGTTTTATT
1 AAGTAATATTTGTTTAATT
23849464 AA
1 AA
23849466 ATTACTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
AAGTAATATTTGTTTAATT
Found at i:23853013 original size:11 final size:11
Alignment explanation
Indices: 23852997--23853031 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
23852987 AGAACTCCCT
23852997 TTGAAGCTTCC
1 TTGAAGCTTCC
23853008 TTGAAGCTTCC
1 TTGAAGCTTCC
*
23853019 TTTGAAGTTTCC
1 -TTGAAGCTTCC
23853031 T
1 T
23853032 AGCATGAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (11 bp):
TTGAAGCTTCC
Found at i:23853022 original size:23 final size:22
Alignment explanation
Indices: 23852981--23853033 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
23852971 TTCTTGGCAA
23852981 CTTCCTAGAACTCCCTTTGAAG
1 CTTCCTAGAACTCCCTTTGAAG
* *
23853003 CTTCCTTGAAGCTTCCTTTGAAG
1 CTTCCTAGAA-CTCCCTTTGAAG
*
23853026 TTTCCTAG
1 CTTCCTAG
23853034 CATGAGAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (22 bp):
CTTCCTAGAACTCCCTTTGAAG
Found at i:23853023 original size:12 final size:12
Alignment explanation
Indices: 23852994--23853031 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
23852984 CCTAGAACTC
23852994 CCTTTGAAGCTT
1 CCTTTGAAGCTT
23853006 CC-TTGAAGCTT
1 CCTTTGAAGCTT
*
23853017 CCTTTGAAGTTT
1 CCTTTGAAGCTT
23853029 CCT
1 CCT
23853032 AGCATGAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 11 0.46
12 13 0.54
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (12 bp):
CCTTTGAAGCTT
Found at i:23854169 original size:114 final size:112
Alignment explanation
Indices: 23853966--23854273 Score: 318
Period size: 114 Copynumber: 2.7 Consensus size: 112
23853956 GTGCTCGAGG
* * * *
23853966 ATACTTAGGATTTCTTTTTCATTTTTTGAAAACATCGAAGTCGAAATTGGTATTGATACCAACTA
1 ATACTTAGGATTTATTTTTCATTTTTT-AAAACATCGAAGTCGAAACTGGTATCGATAACAACTA
* * * *
23854031 TGGGTATTGATACTTATGGTCTGGTATCGATACTTTGGTGATTCTATCA
65 TGGGTATCGATACTTA-GGTCTGGTATCGATACCTTAGTGAATCTATCA
*
23854080 ATACTTAGGATTTATTTTTCATTTTCCTT-AAACATCGAAGAT-GAAACTGGTATCGATAACAGC
1 ATACTTAGGATTTATTTTTCATTTT--TTAAAACATCGAAG-TCGAAACTGGTATCGATAACAAC
* * *
23854143 TATGGGTATCGATTCTTA-GTCCCTGGTATCGATACCTTAGTGAATGTATCG
63 TATGGGTATCGATACTTAGGT--CTGGTATCGATACCTTAGTGAATCTATCA
* * * * * * **
23854194 ATACTTAGAATTTATTTTTCAATTTTTCAAAACATTGAAGCCGAAATTGGTATGGAT-ACAAGAA
1 ATACTTAGGATTTATTTTTC-ATTTTTTAAAACATCGAAGTCGAAACTGGTATCGATAACAACTA
*
23854258 TTGGGTATCAATACTT
65 -TGGGTATCGATACTT
23854274 TTGGCACTGG
Statistics
Matches: 162, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
112 2 0.01
113 5 0.03
114 147 0.91
115 6 0.04
116 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (112 bp):
ATACTTAGGATTTATTTTTCATTTTTTAAAACATCGAAGTCGAAACTGGTATCGATAACAACTAT
GGGTATCGATACTTAGGTCTGGTATCGATACCTTAGTGAATCTATCA
Found at i:23858496 original size:6 final size:6
Alignment explanation
Indices: 23858485--23858517 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
23858475 AAGGATTTTC
23858485 TTTCTT TTTCTT TTTC-T TTTCTTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTC-TT TTTCTT TTT
23858518 AGAATAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.20
6 15 0.60
7 5 0.20
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:23858507 original size:17 final size:17
Alignment explanation
Indices: 23858480--23858517 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
23858470 TAGGTAAGGA
23858480 TTTTCTTTC-TTTTTCT
1 TTTTCTTTCTTTTTTCT
23858496 TTTTCTTTTCTTTTTTCT
1 TTTTC-TTTCTTTTTTCT
23858514 TTTT
1 TTTT
23858518 AGAATAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.25
17 4 0.20
18 11 0.55
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTCTTTCTTTTTTCT
Found at i:23863109 original size:174 final size:174
Alignment explanation
Indices: 23862875--23863189 Score: 404
Period size: 174 Copynumber: 1.8 Consensus size: 174
23862865 GAAGCAGTTC
* **
23862875 GTGGTCATGAAGAGTCCAGTAAAGTTGGTTTGGAGGGTAACTTAAGAACCTTAGATAGTGACTGC
1 GTGGTCATGAAGAGTCCAGTAAAGTTGGTTTGGAGGGTAACTCAAGAACCTTAGATAGTGAAGGC
*** * * * *
23862940 CATGC-GGTGGATGGTTTGGGTTCAAGGAATGAGGTTTCAGGTGGTGAAGGTAGGGCTCAGAATG
66 CATGCAGCCAG-TGATTTGGGTTCAAGGAATGAAGTTTCAGGTGGTGAAGCTAAGGCTCAGAATG
23863004 AGGTAAATGGAGGTGTGGTTCGGTCTTGTTCTAATGATGTAATTT
130 AGGTAAATGGAGGTGTGGTTCGGTCTTGTTCTAATGATGTAATTT
* * *
23863049 GTGGTCAT-AATGAGTCC-GATGAAGTTGGTTTGGAGGGTAA-TCCGAGTACCTTAGATAGTGAA
1 GTGGTCATGAA-GAGTCCAG-TAAAGTTGGTTTGGAGGGTAACT-CAAGAACCTTAGATAGTGAA
*** * *
23863111 GGTGGTGCAGCCAGTGATTTGGGTTCAAGGTATGAAGTTTCAGGTGGTGAAGCTAAGGCTCGGAA
63 GGCCATGCAGCCAGTGATTTGGGTTCAAGGAATGAAGTTTCAGGTGGTGAAGCTAAGGCTCAGAA
23863176 TGAGGTAAATGGAG
128 TGAGGTAAATGGAG
23863190 CCAGGGTTTT
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
173 4 0.03
174 113 0.95
175 2 0.02
ACGTcount: A:0.25, C:0.10, G:0.36, T:0.29
Consensus pattern (174 bp):
GTGGTCATGAAGAGTCCAGTAAAGTTGGTTTGGAGGGTAACTCAAGAACCTTAGATAGTGAAGGC
CATGCAGCCAGTGATTTGGGTTCAAGGAATGAAGTTTCAGGTGGTGAAGCTAAGGCTCAGAATGA
GGTAAATGGAGGTGTGGTTCGGTCTTGTTCTAATGATGTAATTT
Found at i:23867522 original size:33 final size:33
Alignment explanation
Indices: 23867485--23867556 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
23867475 CATCGGGTCC
* *
23867485 GGAAACT-CAGACCATTTCTACAACCATGGGTGA
1 GGAAACTACA-ACCATTCCTACAAACATGGGTGA
* *
23867518 GGAAACTACAACCATTCCTGCAAACTTGGGTGA
1 GGAAACTACAACCATTCCTACAAACATGGGTGA
23867551 GGAAAC
1 GGAAAC
23867557 AACTGCTACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 32 0.94
34 2 0.06
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (33 bp):
GGAAACTACAACCATTCCTACAAACATGGGTGA
Found at i:23867899 original size:33 final size:33
Alignment explanation
Indices: 23867829--23867948 Score: 91
Period size: 33 Copynumber: 3.6 Consensus size: 33
23867819 ACCATTCCTG
* * * * * **
23867829 CAACCTTAGGTCAAGAAACTCCTACCCTTCCTG
1 CAACCTTGGGTGAAGAAACTCATATCATTCCCA
* *
23867862 CAACCTTGGGTGAAGGAACTCATAGT-ATTCCCT
1 CAACCTTGGGTGAAGAAACTCATA-TCATTCCCA
* * *
23867895 CAACCTCGAGTGAAGAAAGTCATATCATTCCCA
1 CAACCTTGGGTGAAGAAACTCATATCATTCCCA
*
23867928 CTAACC-TGGATGAAGAAACTC
1 C-AACCTTGGGTGAAGAAACTC
23867949 CTACTGATCC
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
32 1 0.01
33 62 0.93
34 4 0.06
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (33 bp):
CAACCTTGGGTGAAGAAACTCATATCATTCCCA
Found at i:23875675 original size:38 final size:38
Alignment explanation
Indices: 23875624--23875701 Score: 111
Period size: 38 Copynumber: 2.1 Consensus size: 38
23875614 AATATTTAAT
*
23875624 AAAAAATAATTAAATTGATTAAACCTACAAATTAAACC
1 AAAAAATAATTAAATTGATTAAACCAACAAATTAAACC
* * * *
23875662 AAAAATTAGTTAAATTGGTTAATCCAACAAATTAAACC
1 AAAAAATAATTAAATTGATTAAACCAACAAATTAAACC
23875700 AA
1 AA
23875702 GAATATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (38 bp):
AAAAAATAATTAAATTGATTAAACCAACAAATTAAACC
Found at i:23878072 original size:25 final size:25
Alignment explanation
Indices: 23878038--23878105 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
23878028 CTACTATTTC
23878038 ATTATTATATTACTATTATTTTATT
1 ATTATTATATTACTATTATTTTATT
* *
23878063 GTTATTATATAACTATTATTTTATT
1 ATTATTATATTACTATTATTTTATT
* *
23878088 ATTAATTTTGTTACTATT
1 ATT-ATTATATTACTATT
23878106 TTAGAGTCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 25 0.69
26 11 0.31
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (25 bp):
ATTATTATATTACTATTATTTTATT
Found at i:23878090 original size:11 final size:11
Alignment explanation
Indices: 23878032--23878108 Score: 55
Period size: 11 Copynumber: 6.6 Consensus size: 11
23878022 ATTTTGCTAC
*
23878032 TATTTCATTAT
1 TATTTTATTAT
* *
23878043 TATATTACTAT
1 TATTTTATTAT
*
23878054 TATTTTATTGT
1 TATTTTATTAT
*
23878065 TATTATATAACTAT
1 TATT-T-T-ATTAT
23878079 TATTTTATTAT
1 TATTTTATTAT
* *
23878090 TAATTTTGTTAC
1 T-ATTTTATTAT
23878102 TATTTTA
1 TATTTTA
23878109 GAGTCATTTG
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
11 30 0.60
12 11 0.22
13 2 0.04
14 7 0.14
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:23878953 original size:23 final size:23
Alignment explanation
Indices: 23878933--23878977 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
23878923 TAAAATTTTG
*
23878933 AATTATTTAGTGATAATATTTAA
1 AATTATTTAGTAATAATATTTAA
23878956 AATTATTTAGTAATAATATTTA
1 AATTATTTAGTAATAATATTTA
23878978 GGGAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (23 bp):
AATTATTTAGTAATAATATTTAA
Found at i:23882150 original size:7 final size:6
Alignment explanation
Indices: 23882124--23882148 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23882114 TTTAATCATT
23882124 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
23882149 ATGAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:23885677 original size:18 final size:18
Alignment explanation
Indices: 23885654--23885768 Score: 67
Period size: 20 Copynumber: 6.2 Consensus size: 18
23885644 ATTAAATCGT
23885654 TTTTTTACATTTTTAATA
1 TTTTTTACATTTTTAATA
*** *
23885672 TTTTTTCACAAACTT-A-C
1 TTTTTT-ACATTTTTAATA
*
23885689 TTTTTTA-ATTTCTAATA
1 TTTTTTACATTTTTAATA
*
23885706 -TTTTTACAACTTTTAATAA
1 TTTTTTAC-ATTTTTAAT-A
23885725 TTCTTTTACATTTTTAATAA
1 TT-TTTTACATTTTTAAT-A
* *
23885745 TTATTTGCAATTTCTTAATA
1 TTTTTTAC-ATTT-TTAATA
23885765 TTTT
1 TTTT
23885769 AATTAATTCT
Statistics
Matches: 72, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
15 2 0.03
16 8 0.11
17 6 0.08
18 14 0.19
19 10 0.14
20 21 0.29
21 11 0.15
ACGTcount: A:0.30, C:0.10, G:0.01, T:0.59
Consensus pattern (18 bp):
TTTTTTACATTTTTAATA
Found at i:23890630 original size:21 final size:22
Alignment explanation
Indices: 23890606--23890653 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
23890596 CCATTTAATG
23890606 ACTC-ACCACTATAAATTACGA
1 ACTCTACCACTATAAATTACGA
*
23890627 ACTCTTCCACTATAAATTACGA
1 ACTCTACCACTATAAATTACGA
*
23890649 CCTCT
1 ACTCT
23890654 TTCCCCGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.35, C:0.31, G:0.04, T:0.29
Consensus pattern (22 bp):
ACTCTACCACTATAAATTACGA
Found at i:23890636 original size:22 final size:22
Alignment explanation
Indices: 23890611--23890654 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23890601 TAATGACTCA
23890611 CCACTATAAATTACGAACTCTT
1 CCACTATAAATTACGAACTCTT
*
23890633 CCACTATAAATTACGACCTCTT
1 CCACTATAAATTACGAACTCTT
23890655 TCCCCGTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.32
Consensus pattern (22 bp):
CCACTATAAATTACGAACTCTT
Found at i:23904521 original size:27 final size:27
Alignment explanation
Indices: 23904491--23904560 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
23904481 TGATAATTTG
23904491 ACCCTCAG-TAAAATTTTTAACGATTCT
1 ACCCT-AGATAAAATTTTTAACGATTCT
* * *
23904518 ACCCTGGATAAAATTTTTGACGATTTT
1 ACCCTAGATAAAATTTTTAACGATTCT
* *
23904545 ACCCTTGATATAATTT
1 ACCCTAGATAAAATTT
23904561 CGAGAAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 36 0.97
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (27 bp):
ACCCTAGATAAAATTTTTAACGATTCT
Found at i:23909768 original size:13 final size:13
Alignment explanation
Indices: 23909738--23909769 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23909728 TTTCAAACTA
23909738 AAATAC-ATGAGT
1 AAATACAATGAGT
23909750 -AATACAATGAGT
1 AAATACAATGAGT
23909762 AAATACAA
1 AAATACAA
23909770 ATATAACACG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 6 0.33
13 7 0.39
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.22
Consensus pattern (13 bp):
AAATACAATGAGT
Found at i:23915220 original size:18 final size:19
Alignment explanation
Indices: 23915183--23915222 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
23915173 TAAATAATCT
23915183 TAAAAAATTCAAAATGTTTA
1 TAAAAAATTCAAAA-GTTTA
23915203 TAAAAAATTCAAAA-TTTA
1 TAAAAAATTCAAAAGTTTA
23915221 TA
1 TA
23915223 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 6 0.30
20 14 0.70
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
TAAAAAATTCAAAAGTTTA
Found at i:23915458 original size:20 final size:20
Alignment explanation
Indices: 23915430--23915472 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
23915420 CTAACATGAA
*
23915430 ATTAATTATACTGTAACAAG
1 ATTAATTATACTATAACAAG
* *
23915450 ATTAGTTATACTATTACAAG
1 ATTAATTATACTATAACAAG
23915470 ATT
1 ATT
23915473 TCATTTCACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (20 bp):
ATTAATTATACTATAACAAG
Found at i:23920383 original size:18 final size:19
Alignment explanation
Indices: 23920343--23920383 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
23920333 CGAACACACC
*
23920343 AAAAAAATATGAAATAATA
1 AAAAAAATATGAAAAAATA
23920362 AAAAAAACTA-GAAAAAATA
1 AAAAAAA-TATGAAAAAATA
23920381 AAA
1 AAA
23920384 CTTATCAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAAAAATATGAAAAAATA
Found at i:23921527 original size:6 final size:6
Alignment explanation
Indices: 23921516--23921543 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
23921506 ATACCTTTTA
23921516 AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAA
23921544 ATAATATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:23923301 original size:20 final size:20
Alignment explanation
Indices: 23923276--23923326 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
23923266 TCTGGAAAGA
*
23923276 AGTTGTGAATCATAACCGCC
1 AGTTGTGAATCATAACCACC
23923296 AGTTGTGAATCATAACCACC
1 AGTTGTGAATCATAACCACC
*
23923316 AGTTATGAATC
1 AGTTGTGAATC
23923327 GTATTCGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (20 bp):
AGTTGTGAATCATAACCACC
Found at i:23938673 original size:23 final size:23
Alignment explanation
Indices: 23938638--23938690 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
23938628 AATGTTATTG
* * *
23938638 ATCAGGGGTAGCTTTGGCTACAT
1 ATCAGTGGAAGCTTCGGCTACAT
*
23938661 TTCAGTGGAAGCTTCGGCTACAT
1 ATCAGTGGAAGCTTCGGCTACAT
23938684 ATCAGTG
1 ATCAGTG
23938691 TGACACTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (23 bp):
ATCAGTGGAAGCTTCGGCTACAT
Found at i:23944925 original size:22 final size:22
Alignment explanation
Indices: 23944866--23944922 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 22
23944856 ATCTTCAAGA
23944866 ATATGCAATCTT---AGATATG
1 ATATGCAATCTTAGAAGATATG
23944885 ATATGCAATCTTAGAAGATATG
1 ATATGCAATCTTAGAAGATATG
* *
23944907 ATTTTGTAATCTTAGA
1 A-TATGCAATCTTAGA
23944923 GATTTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 12 0.38
22 8 0.25
23 12 0.38
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATATGCAATCTTAGAAGATATG
Found at i:23945170 original size:23 final size:23
Alignment explanation
Indices: 23945126--23945170 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
23945116 TCTTATTTTG
* *
23945126 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
23945149 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
23945171 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:23945862 original size:3 final size:3
Alignment explanation
Indices: 23945856--23945881 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
23945846 ATTATTATTA
23945856 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
23945882 CTTGATCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:23954083 original size:23 final size:23
Alignment explanation
Indices: 23954056--23954146 Score: 164
Period size: 23 Copynumber: 4.0 Consensus size: 23
23954046 TAAGTACCTG
23954056 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
23954079 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
* *
23954102 ATACGACATACGAGGTGCTTGAA
1 ATACGACACACGAGGTGCCTGAA
23954125 ATACGACACACGAGGTGCCTGA
1 ATACGACACACGAGGTGCCTGA
23954147 TATGACACAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 64 1.00
ACGTcount: A:0.34, C:0.24, G:0.26, T:0.15
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:23954157 original size:46 final size:46
Alignment explanation
Indices: 23954052--23954157 Score: 155
Period size: 46 Copynumber: 2.3 Consensus size: 46
23954042 CATATAAGTA
*
23954052 CCTGATACGACAC--ACGAGGTGCCTGAAATACGACACACGAGGTG
1 CCTGATATGACACATACGAGGTGCCTGAAATACGACACACGAGGTG
* *
23954096 CCTGAAAT-ACGACATACGAGGTGCTTGAAATACGACACACGAGGTG
1 CCTGATATGAC-ACATACGAGGTGCCTGAAATACGACACACGAGGTG
23954142 CCTGATATGACACATA
1 CCTGATATGACACATA
23954158 AAGTGCCTGG
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
43 2 0.04
44 8 0.15
46 42 0.78
47 2 0.04
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.17
Consensus pattern (46 bp):
CCTGATATGACACATACGAGGTGCCTGAAATACGACACACGAGGTG
Found at i:23954179 original size:23 final size:23
Alignment explanation
Indices: 23954150--23954235 Score: 154
Period size: 23 Copynumber: 3.7 Consensus size: 23
23954140 TGCCTGATAT
23954150 GACACATAAAGTGCCTGGTGTAC
1 GACACATAAAGTGCCTGGTGTAC
*
23954173 GACACATAAAGTGCCTAGTGTAC
1 GACACATAAAGTGCCTGGTGTAC
*
23954196 GACACATAAAGTGCCTGATGTAC
1 GACACATAAAGTGCCTGGTGTAC
23954219 GACACATAAAGTGCCTG
1 GACACATAAAGTGCCTG
23954236 ATCGGCAAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (23 bp):
GACACATAAAGTGCCTGGTGTAC
Found at i:23957168 original size:23 final size:23
Alignment explanation
Indices: 23957124--23957169 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
23957114 TATTATTATT
*
23957124 TTTAAAAAATAAAAAAATATATA
1 TTTAAAAAATAAAAAAACATATA
* *
23957147 TTTAAAATATAAAAAAGCATATA
1 TTTAAAAAATAAAAAAACATATA
23957170 ATATTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
TTTAAAAAATAAAAAAACATATA
Found at i:23983642 original size:44 final size:45
Alignment explanation
Indices: 23983577--23983667 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
23983567 ACCTCTATTC
* * *
23983577 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
23983621 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
23983666 CA
1 CA
23983668 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:23983682 original size:17 final size:16
Alignment explanation
Indices: 23983648--23983733 Score: 145
Period size: 16 Copynumber: 5.2 Consensus size: 16
23983638 GATTAGCTAT
23983648 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
23983664 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
23983681 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
23983698 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
23983714 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
23983730 TACA
1 TACA
23983734 GCGAACCAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
16 34 0.51
17 33 0.49
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.24
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24010153 original size:33 final size:33
Alignment explanation
Indices: 24010108--24010174 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
24010098 TTCCAAACAA
24010108 ATTGGTTAAATAGACACAAATTTTCCAATTTTT
1 ATTGGTTAAATAGACACAAATTTTCCAATTTTT
* *
24010141 ATTGGTTGAATAGACACAAATTTTCTAATTTTT
1 ATTGGTTAAATAGACACAAATTTTCCAATTTTT
24010174 A
1 A
24010175 AATAGAATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (33 bp):
ATTGGTTAAATAGACACAAATTTTCCAATTTTT
Found at i:24018315 original size:6 final size:6
Alignment explanation
Indices: 24018304--24018332 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
24018294 ATAATTTATA
24018304 AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
24018333 TGCTTTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:24018640 original size:21 final size:20
Alignment explanation
Indices: 24018589--24018640 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
24018579 AAAATTTTTT
*
24018589 TCGAATCAAATTGAGTCGAG
1 TCGAATCAAATTGAGTCAAG
*
24018609 T-GAAATGAAATTCGAGTCAAG
1 TCG-AATCAAATT-GAGTCAAG
24018630 TCGAATCAAAT
1 TCGAATCAAAT
24018641 AAAATTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 1 0.04
20 9 0.35
21 15 0.58
22 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (20 bp):
TCGAATCAAATTGAGTCAAG
Found at i:24018904 original size:18 final size:19
Alignment explanation
Indices: 24018864--24018905 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
24018854 TATTATTTAG
*
24018864 AATTTTTTAAAAAAATTAT
1 AATTTTTTAAAAAAATTAA
*
24018883 AATTTTTTAAAAATA-TAA
1 AATTTTTTAAAAAAATTAA
24018901 AATTT
1 AATTT
24018906 GAAATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATTTTTTAAAAAAATTAA
Found at i:24018932 original size:18 final size:19
Alignment explanation
Indices: 24018911--24018947 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24018901 AATTTGAAAT
*
24018911 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
24018929 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTTGAA
24018948 ATCTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:24025457 original size:20 final size:19
Alignment explanation
Indices: 24025425--24025463 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
24025415 ACCTCTGAAG
24025425 TAATTTTGTTTTTTGTTTTC
1 TAATTTTGTTTTTT-TTTTC
24025445 TAATGTTTGTTTTTTTTTT
1 TAAT-TTTGTTTTTTTTTT
24025464 GAATTCGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.10, C:0.03, G:0.10, T:0.77
Consensus pattern (19 bp):
TAATTTTGTTTTTTTTTTC
Found at i:24027232 original size:23 final size:23
Alignment explanation
Indices: 24027206--24027252 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
24027196 TATGTGATTT
* * *
24027206 AATGTCTGAATTGTTATTGTTAC
1 AATGTATGAATTGTGAATGTTAC
*
24027229 AATGTATGATTTGTGAATGTTAC
1 AATGTATGAATTGTGAATGTTAC
24027252 A
1 A
24027253 TGCCTACTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.06, G:0.19, T:0.45
Consensus pattern (23 bp):
AATGTATGAATTGTGAATGTTAC
Found at i:24027562 original size:22 final size:22
Alignment explanation
Indices: 24027536--24027579 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
24027526 CCCTTAATTT
*
24027536 TTACTAGAAGTTTATCTACAAA
1 TTACTAGAAGTTTATCCACAAA
**
24027558 TTACTAGTGGTTTATCCACAAA
1 TTACTAGAAGTTTATCCACAAA
24027580 GTGATGTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (22 bp):
TTACTAGAAGTTTATCCACAAA
Found at i:24028664 original size:7 final size:7
Alignment explanation
Indices: 24028652--24028690 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
24028642 AACTATAGTC
24028652 AAACTTT
1 AAACTTT
24028659 AAACTTT
1 AAACTTT
*
24028666 AAACTAT
1 AAACTTT
24028673 AAACTTT
1 AAACTTT
* *
24028680 AGACTAT
1 AAACTTT
24028687 AAAC
1 AAAC
24028691 ACTCAGAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.33
Consensus pattern (7 bp):
AAACTTT
Found at i:24028675 original size:14 final size:14
Alignment explanation
Indices: 24028652--24028690 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
24028642 AACTATAGTC
*
24028652 AAACTTTAAACTTT
1 AAACTATAAACTTT
24028666 AAACTATAAACTTT
1 AAACTATAAACTTT
*
24028680 AGACTATAAAC
1 AAACTATAAAC
24028691 ACTCAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.33
Consensus pattern (14 bp):
AAACTATAAACTTT
Found at i:24035320 original size:45 final size:45
Alignment explanation
Indices: 24035264--24035349 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
24035254 CAACAAAAAT
* * *
24035264 GTCACATATGGAATCTACATATAGCTGTGGGTACACAACAAGACC
1 GTCACAGATGGAATCTACATATAGCTATGAGTACACAACAAGACC
* *
24035309 GTCACAGATGGAATCTACCTATGGCTATGAGTACACAACAA
1 GTCACAGATGGAATCTACATATAGCTATGAGTACACAACAA
24035350 AAGAAATGCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (45 bp):
GTCACAGATGGAATCTACATATAGCTATGAGTACACAACAAGACC
Found at i:24041422 original size:3 final size:3
Alignment explanation
Indices: 24041416--24041440 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
24041406 ATGAAGCAAG
24041416 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
24041441 AATGGTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:24046004 original size:3 final size:3
Alignment explanation
Indices: 24045996--24046038 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
24045986 AATTTCAGTG
24045996 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
24046039 TTGTTTTATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:24047636 original size:44 final size:45
Alignment explanation
Indices: 24047585--24047677 Score: 120
Period size: 46 Copynumber: 2.1 Consensus size: 45
24047575 TACAATATCT
* *
24047585 ATTCCATTCAACCAGACACAA-GAA-TAC-TATTACAGCTCTATTCC
1 ATTCCATTCAACCA-A-ACAACGAATTACTTATTACAACTCTATTAC
24047629 ATTCCATTCAACCAAACAACTGAATTACTTATTACAACTCTATTAC
1 ATTCCATTCAACCAAACAAC-GAATTACTTATTACAACTCTATTAC
24047675 ATT
1 ATT
24047678 ACAACTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
42 4 0.09
43 1 0.02
44 17 0.40
45 3 0.07
46 18 0.42
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (45 bp):
ATTCCATTCAACCAAACAACGAATTACTTATTACAACTCTATTAC
Found at i:24047703 original size:16 final size:16
Alignment explanation
Indices: 24047659--24047709 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
24047649 TGAATTACTT
*
24047659 ATTACAA-CTCTATTAC
1 ATTACAACCT-TATTCC
*
24047675 ATTACAACTTTATTCC
1 ATTACAACCTTATTCC
24047691 ATTACAACCTTATTCC
1 ATTACAACCTTATTCC
24047707 ATT
1 ATT
24047710 CCCTCCAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 30 0.97
17 1 0.03
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTACAACCTTATTCC
Found at i:24050236 original size:96 final size:96
Alignment explanation
Indices: 24050120--24050311 Score: 296
Period size: 96 Copynumber: 2.0 Consensus size: 96
24050110 GTAACATGAA
24050120 CCAAATCATAGAATGAAAACTTTAATCTTTCTTTCAGAAGAAA-AGTTAATTTTTTCTTTAATCG
1 CCAAATCATAGAATGAAAACTTTAATCTTTCTTTCAGAAGAAAGA-TTAATTTTTTCTTTAATCG
* * *
24050184 GAAACTATACGTTATTTCCAGAAAATAAATTT
65 AAAACTAAACATTATTTCCAGAAAATAAATTT
* * * *
24050216 CCAAATCATAGAATGGAAACTTTAATTTTTCTTTCAGTAGAAAGATTATTTTTTTCTTTAATCGA
1 CCAAATCATAGAATGAAAACTTTAATCTTTCTTTCAGAAGAAAGATTAATTTTTTCTTTAATCGA
*
24050281 AAACTAAACATTATTTCTAGAAAATAAATTT
66 AAACTAAACATTATTTCCAGAAAATAAATTT
24050312 TCACTATTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 86 0.99
97 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (96 bp):
CCAAATCATAGAATGAAAACTTTAATCTTTCTTTCAGAAGAAAGATTAATTTTTTCTTTAATCGA
AAACTAAACATTATTTCCAGAAAATAAATTT
Found at i:24055307 original size:525 final size:525
Alignment explanation
Indices: 24054317--24055363 Score: 1679
Period size: 525 Copynumber: 2.0 Consensus size: 525
24054307 ACATAAAAGT
* **
24054317 ATATGAGTCACGAATACATAGTCCATCATCCACTCAGGATTAATGTATGTCACACTATGATTGTC
1 ATATGAGTCACGAATACATAGTCCATCATCCACTCAGGATTAAGGTATGTCACACTATGATCATC
24054382 ACAAGTGAATAAATCCATAATCAGATTTAGGATCTATTTTACTTAGGTCATGTTCGACGTACTAT
66 ACAAGTGAATAAATCCATAATCAGATTTAGGATCTATTTTACTTAGGTCATGTTCGACGTACTAT
*
24054447 AAATCCTGCCAGTCACATGTATGTCTCTATCTTCTAAGAGTCATTCGCTCCGATACCCATGACAA
131 AAATCCAGCCAGTCACATGTATGTCTCTATCTTCTAAGAGTCATTCGCTCCGATACCCATGACAA
* *
24054512 GGTATCTCCCCAATTTGGACTTGATAGACAATTTTAGTCTTTTAATTGATTTTCTCAATTTTGAT
196 GGTATCTCCCCAATTTAGACTTGATAGACAATATTAGTCTTTTAATTGATTTTCTCAATTTTGAT
* * * * * *
24054577 TTGACTAAGGATGTGTTTTGATTAACTACTAATATAAGCTGCCTTTTTATATTATGATTCGACCA
261 TAGACTAAGGACGTGTTTAGATTAACTACTAATATAAGCTGCCTTTCTATATTACGATCCGACCA
* *
24054642 CACAATACCACTTAATATTAGTTAAATGTTAGATACACAGTGAGCCAATATTTGCTTTCATTTTA
326 CACAATACCACTTAATATTAGTTAAACGTTAGATACACAGTGAGCCAATATTTGCTTTCACTTTA
* ** *
24054707 ATTTTAGTGCAAAAACCTTTGAGGAAAATATACGGAGATATTAATGAAACTAATGGATATTTTAT
391 ATTTGAGTGCAAAAACCTTTGAGGAAAATATACAAAGATATTAATGAAACTAATGGATATTTTAA
*
24054772 TAAACCAATTTATTCGAAAAAAATACAAGTACATATAGAC-ATAAATACTACACTAAGGGCGTTA
456 TAAACCAATTTATTCGAAAAAAATACAAGTACATATAGACGAT-AATACTACACTAAGGGCATTA
24054836 GATTAC
520 GATTAC
*
24054842 ATATGAGTCACGAATACATAGTCCATCATCCACTCAGGATTAAGGTATGTCACATTATGATCATC
1 ATATGAGTCACGAATACATAGTCCATCATCCACTCAGGATTAAGGTATGTCACACTATGATCATC
* * *
24054907 ACAAGTGAATAAATCCATAATCAGATTTAGGATCTATTTTACTTTGGTTATGTTCGATGTACTAT
66 ACAAGTGAATAAATCCATAATCAGATTTAGGATCTATTTTACTTAGGTCATGTTCGACGTACTAT
* * * * *
24054972 AAGTCCAGTCAGTCACATGTATGTCTCTATCTTTTAGGAGTCATTCGCTTCGATACCCATGACAA
131 AAATCCAGCCAGTCACATGTATGTCTCTATCTTCTAAGAGTCATTCGCTCCGATACCCATGACAA
*
24055037 GGTATCTCCCCAA-TTAGACTTGATAGACATCATATTAGTCTTTTACTTGATTTGT-TCAATTTT
196 GGTATCTCCCCAATTTAGACTTGATAGACA--ATATTAGTCTTTTAATTGATTT-TCTCAATTTT
* * *
24055100 GATTAGACTAAGGACGTGTTTAGATTAACTACTAATATAAGTTGTCTTTCTATCTTACGATCCGA
258 GATTAGACTAAGGACGTGTTTAGATTAACTACTAATATAAGCTGCCTTTCTATATTACGATCCGA
* *
24055165 CCACATAATACCACTTAATATTAGTTAAACGTTAGATACACAGTGAGCCAGTATTTGCTTTCACT
323 CCACACAATACCACTTAATATTAGTTAAACGTTAGATACACAGTGAGCCAATATTTGCTTTCACT
* * *
24055230 TTACTTTGCGTGCAAAAACCTTTGAGGACAATATACAAAGAT-TTAATGAAACTAATGGATATTT
388 TTAATTTGAGTGCAAAAACCTTTGAGGAAAATATACAAAGATATTAATGAAACTAATGGATATTT
* *
24055294 TAATAAACCAATTTTTTCGAAAAAAATACAATTACATATAGACGATAATACTACACTAAGGGCAT
453 TAATAAACCAATTTATTCGAAAAAAATACAAGTACATATAGACGATAATACTACACTAAGGGCAT
24055359 TAGAT
518 TAGAT
24055364 CCAAACACAT
Statistics
Matches: 479, Mismatches: 39, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
524 15 0.03
525 280 0.58
526 183 0.38
527 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (525 bp):
ATATGAGTCACGAATACATAGTCCATCATCCACTCAGGATTAAGGTATGTCACACTATGATCATC
ACAAGTGAATAAATCCATAATCAGATTTAGGATCTATTTTACTTAGGTCATGTTCGACGTACTAT
AAATCCAGCCAGTCACATGTATGTCTCTATCTTCTAAGAGTCATTCGCTCCGATACCCATGACAA
GGTATCTCCCCAATTTAGACTTGATAGACAATATTAGTCTTTTAATTGATTTTCTCAATTTTGAT
TAGACTAAGGACGTGTTTAGATTAACTACTAATATAAGCTGCCTTTCTATATTACGATCCGACCA
CACAATACCACTTAATATTAGTTAAACGTTAGATACACAGTGAGCCAATATTTGCTTTCACTTTA
ATTTGAGTGCAAAAACCTTTGAGGAAAATATACAAAGATATTAATGAAACTAATGGATATTTTAA
TAAACCAATTTATTCGAAAAAAATACAAGTACATATAGACGATAATACTACACTAAGGGCATTAG
ATTAC
Found at i:24060789 original size:20 final size:20
Alignment explanation
Indices: 24060752--24060790 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24060742 TACTTTCTTC
*
24060752 TTTACTTACTCTCTTACTTG
1 TTTACTTACTCTCATACTTG
24060772 TTTACTTACT-TGCATACTT
1 TTTACTTACTCT-CATACTT
24060791 AAATAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTACTTACTCTCATACTTG
Found at i:24061142 original size:50 final size:50
Alignment explanation
Indices: 24061083--24061183 Score: 139
Period size: 50 Copynumber: 2.0 Consensus size: 50
24061073 ATGAAAGTTA
* * * *
24061083 TCATATCGGTGCCCATGCTATGTCCCAGACATGGTCTTACAAGGGACCTC
1 TCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACAAGGGACCTC
* **
24061133 TCATTTCGGTGCCAACGCCATGTCCCAAACATGGTCTTACGTGGGACCTC
1 TCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACAAGGGACCTC
24061183 T
1 T
24061184 TGTAACCTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.27
Consensus pattern (50 bp):
TCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACAAGGGACCTC
Found at i:24064294 original size:113 final size:113
Alignment explanation
Indices: 24064094--24064305 Score: 264
Period size: 113 Copynumber: 1.9 Consensus size: 113
24064084 TCACTGCCCA
* *
24064094 TGTGACTTTAATTCCAAAATAGTGAGTTAGATGGCCTGAACACACAACCATGTCCCTGGCCTATG
1 TGTGACTCTAATTCCAAAATAGTGAGCTAGATGGCCTGAACACACAACCATGTCCCTGGCCTATG
*** * * *
24064159 TGTTTCTAATTCCAAAATAGTGAGTTACACGGCCGGGACACATGCCTG
66 TGACCCTAATTACAAAACAGTGAGTGACACGGCCGGGACACATGCCTG
** * * * ** *
24064207 TGTGACTCTAATTCTGAAATAGTGAGCTATATGGTCTGGACACACGCCCATGTCCCTGGCCTGTG
1 TGTGACTCTAATTCCAAAATAGTGAGCTAGATGGCCTGAACACACAACCATGTCCCTGGCCTATG
24064272 TGACCCTAATTTAC-AAACAGTGAGTGACACGGCC
66 TGACCCTAA-TTACAAAACAGTGAGTGACACGGCC
24064306 TGTCACATGA
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
113 79 0.96
114 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (113 bp):
TGTGACTCTAATTCCAAAATAGTGAGCTAGATGGCCTGAACACACAACCATGTCCCTGGCCTATG
TGACCCTAATTACAAAACAGTGAGTGACACGGCCGGGACACATGCCTG
Found at i:24064948 original size:17 final size:17
Alignment explanation
Indices: 24064928--24064963 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24064918 GAAAAAGGGG
*
24064928 AAAAAAAGGAAAGAAAT
1 AAAAAAAGGAAACAAAT
*
24064945 AAAAAATGGAAACAAAT
1 AAAAAAAGGAAACAAAT
24064962 AA
1 AA
24064964 GTTAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.75, C:0.03, G:0.14, T:0.08
Consensus pattern (17 bp):
AAAAAAAGGAAACAAAT
Found at i:24066453 original size:48 final size:48
Alignment explanation
Indices: 24066382--24066479 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
24066372 ATTGTTAAGT
24066382 TAACCACAATTTAACTGATGACAACGTCCCTATATTTCCAATGAGTAG
1 TAACCACAATTTAACTGATGACAACGTCCCTATATTTCCAATGAGTAG
24066430 TAACCACAATTTAACTGATGACAACGTCCCTATATTTCCAATGAGTAG
1 TAACCACAATTTAACTGATGACAACGTCCCTATATTTCCAATGAGTAG
24066478 TA
1 TA
24066480 TGTCATCGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (48 bp):
TAACCACAATTTAACTGATGACAACGTCCCTATATTTCCAATGAGTAG
Found at i:24087455 original size:42 final size:42
Alignment explanation
Indices: 24087406--24087713 Score: 220
Period size: 43 Copynumber: 7.3 Consensus size: 42
24087396 AAAAGGCGTC
** *
24087406 GCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGTGGTT
1 GCTAAGTGCTGATTCCCCGTATTATTGATTATAAAGGTGGTT
* *
24087448 TCTAAGTGCTGATTCCACCGTA-TATTTGATTGTGAAAGG-GGTT
1 GCTAAGTGCTGATTCC-CCGTATTA-TTGATTAT-AAAGGTGGTT
* * *
24087491 GCTATGTGCTGATTCCCCGTATCGA-TGAATATAAAGGTGGTT
1 GCTAAGTGCTGATTCCCCGTAT-TATTGATTATAAAGGTGGTT
* * * *
24087533 GCTAAGTGCTGATTCCACCATA-TATTTCATTGTGAAATG-GGTT
1 GCTAAGTGCTGATTCC-CCGTATTA-TTGATTAT-AAAGGTGGTT
* * * * *
24087576 GCTATGTGCTGATTCTCCGTATCACTGAATATAAAGGTGGTT
1 GCTAAGTGCTGATTCCCCGTATTATTGATTATAAAGGTGGTT
* *
24087618 GCTAAGTACTGATTCCACCGTATCT-TTGATTGTGAAAGG-GGTT
1 GCTAAGTGCTGATTCC-CCGTAT-TATTGATTAT-AAAGGTGGTT
* * * * * *
24087661 GCTATGTGCTGATTTCTCATATCACTGAATT-T-AAGGTGGTT
1 GCTAAGTGCTGATTCCCCGTATTATTG-ATTATAAAGGTGGTT
*
24087702 GCTACGTGCTGA
1 GCTAAGTGCTGA
24087714 ATCCACCGAG
Statistics
Matches: 208, Mismatches: 40, Indels: 37
0.73 0.14 0.13
Matches are distributed among these distances:
40 4 0.02
41 25 0.12
42 78 0.38
43 86 0.41
44 15 0.07
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (42 bp):
GCTAAGTGCTGATTCCCCGTATTATTGATTATAAAGGTGGTT
Found at i:24087500 original size:43 final size:43
Alignment explanation
Indices: 24087406--24087674 Score: 248
Period size: 43 Copynumber: 6.3 Consensus size: 43
24087396 AAAAGGCGTC
** *
24087406 GCTAAGTGCTGATTCC-CCAAAT-TATTGATTCTAAAGGTGGTT
1 GCTAAGTGCTGATTCCACCGTATAT-TTGATTGTAAAGGTGGTT
*
24087448 TCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGG-GGTT
1 GCTAAGTGCTGATTCCACCGTATATTTGATTGT-AAAGGTGGTT
* *** * *
24087491 GCTATGTGCTGATTCC-CCGTATCGATGAATATAAAGGTGGTT
1 GCTAAGTGCTGATTCCACCGTATATTTGATTGTAAAGGTGGTT
* * *
24087533 GCTAAGTGCTGATTCCACCATATATTTCATTGTGAAATG-GGTT
1 GCTAAGTGCTGATTCCACCGTATATTTGATTGT-AAAGGTGGTT
* * * * *
24087576 GCTATGTGCTGATT-CTCCGTATCA-CTGAATATAAAGGTGGTT
1 GCTAAGTGCTGATTCCACCGTAT-ATTTGATTGTAAAGGTGGTT
* *
24087618 GCTAAGTACTGATTCCACCGTATCTTTGATTGTGAAAGG-GGTT
1 GCTAAGTGCTGATTCCACCGTATATTTGATTGT-AAAGGTGGTT
*
24087661 GCTATGTGCTGATT
1 GCTAAGTGCTGATT
24087675 TCTCATATCA
Statistics
Matches: 179, Mismatches: 37, Indels: 21
0.76 0.16 0.09
Matches are distributed among these distances:
41 9 0.05
42 71 0.40
43 84 0.47
44 15 0.08
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (43 bp):
GCTAAGTGCTGATTCCACCGTATATTTGATTGTAAAGGTGGTT
Found at i:24087540 original size:85 final size:85
Alignment explanation
Indices: 24087437--24087721 Score: 430
Period size: 85 Copynumber: 3.4 Consensus size: 85
24087427 TTATTGATTC
*
24087437 TAAAGGTGGTTTCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTGCTATGTGCTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTGCTATGTGCTG
24087502 ATTCCCCGTATCGA-TGAATA
66 ATTCCCCGTATC-ACTGAATA
* * *
24087522 TAAAGGTGGTTGCTAAGTGCTGATTCCACCATATATTTCATTGTGAAATGGGTTGCTATGTGCTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTGCTATGTGCTG
*
24087587 ATTCTCCGTATCACTGAATA
66 ATTCCCCGTATCACTGAATA
* *
24087607 TAAAGGTGGTTGCTAAGTACTGATTCCACCGTATCTTTGATTGTGAAAGGGGTTGCTATGTGCTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTGCTATGTGCTG
* * *
24087672 ATTTCTCATATCACTGAAT-
66 ATTCCCCGTATCACTGAATA
* * *
24087691 TTAAGGTGGTTGCTACGTGCTGAATCCACCG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCG
24087722 AGTAACGGAT
Statistics
Matches: 181, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
84 28 0.15
85 153 0.85
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (85 bp):
TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTTGCTATGTGCTG
ATTCCCCGTATCACTGAATA
Found at i:24092927 original size:26 final size:24
Alignment explanation
Indices: 24092891--24092940 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
24092881 CTTTCATAAT
*
24092891 TTCACTTTTTCACTATCTCAATTCCA
1 TTCAATTTTTCAC-ATCTC-ATTCCA
24092917 TTCAATTTTTCACATCTCATTCCA
1 TTCAATTTTTCACATCTCATTCCA
24092941 ATAGTTCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.26
25 5 0.22
26 12 0.52
ACGTcount: A:0.24, C:0.30, G:0.00, T:0.46
Consensus pattern (24 bp):
TTCAATTTTTCACATCTCATTCCA
Found at i:24093224 original size:51 final size:51
Alignment explanation
Indices: 24093157--24093451 Score: 235
Period size: 51 Copynumber: 5.8 Consensus size: 51
24093147 TAAATGATAC
* * * * *
24093157 CCGGTTCACATAGTAGCCTACACATAGTACTACACTTGTGACCATTTTAAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATATTAAT
* * * * *
24093208 CCGATACACGTAGTAGCATGCACATAGTACTACACACGTGATCGA-AGCT-AT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATA-TTAAT
* * * * * *
24093259 TCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATATTAAT
* * * *
24093309 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGA-AGCTACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATA-TTAAT
** * * * * *
24093361 -CGGTATGCATAGTAGCCTGCACATAATACTACACATGCGACC-TATCATT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATATTAAT
* * *
24093410 CTGGTACACGTAGTA-CCTTCACATAGTACTACACACGTGACC
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC
24093452 TAGCAACTTC
Statistics
Matches: 187, Mismatches: 48, Indels: 20
0.73 0.19 0.08
Matches are distributed among these distances:
49 25 0.13
50 51 0.27
51 106 0.57
52 5 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATATTAAT
Found at i:24093341 original size:101 final size:101
Alignment explanation
Indices: 24093165--24093449 Score: 437
Period size: 101 Copynumber: 2.8 Consensus size: 101
24093155 ACCCGGTTCA
* * * * * * * *
24093165 CATAGTAGCCTACACATAGTACTACACTTGTGACCATTTTAATCCGATACACGTAGTAGCATGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCA
*
24093230 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
65 CATAGTACTACACACGTGATCGAAGCTACTCGGTACG
24093267 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGGTACACGTAGTAGCCTGCAC
*
24093332 ATAGTACTACACACGTGATCGAAGCTACTCGGTATG
66 ATAGTACTACACACGTGATCGAAGCTACTCGGTACG
* * *
24093368 CATAGTAGCCTGCACATAATACTACACATGCGACCTATCATTCTGGTACACGTAGTA-CCTTCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGGTACACGTAGTAGCCTGCAC
24093432 ATAGTACTACACACGTGA
66 ATAGTACTACACACGTGA
24093450 CCTAGCAACT
Statistics
Matches: 170, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
100 24 0.14
101 114 0.67
102 32 0.19
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGGTACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTACTCGGTACG
Found at i:24096095 original size:25 final size:27
Alignment explanation
Indices: 24096031--24096101 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 27
24096021 TTTTCCATAG
*
24096031 TTTTAAGATTAGGTTTTCTTTTCTTTTCA
1 TTTTTAGATTAGGTTTTC--TTCTTTTCA
*
24096060 TTTTTATATTAGGTTTTC-TCTTTTC-
1 TTTTTAGATTAGGTTTTCTTCTTTTCA
*
24096085 TTTTTAGATTAGATTTT
1 TTTTTAGATTAGGTTTT
24096102 TTTTGTTTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 15 0.39
26 7 0.18
29 16 0.42
ACGTcount: A:0.17, C:0.08, G:0.10, T:0.65
Consensus pattern (27 bp):
TTTTTAGATTAGGTTTTCTTCTTTTCA
Found at i:24096292 original size:13 final size:13
Alignment explanation
Indices: 24096274--24096298 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24096264 TAATTTATAT
24096274 GTGTGAAAATTTC
1 GTGTGAAAATTTC
24096287 GTGTGAAAATTT
1 GTGTGAAAATTT
24096299 TATAGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:24097493 original size:43 final size:42
Alignment explanation
Indices: 24097426--24097541 Score: 110
Period size: 43 Copynumber: 2.7 Consensus size: 42
24097416 GATTTGCATA
* * * * *
24097426 TAAGACCATGTCTCGGACATTGGCATCGTATATGATT-TATG
1 TAAGACCACGTCTGGGATACTGGCATCGTATATGATTACATG
* * *
24097467 TTTAAGACC-CTGTTTGGGATAGTGGCATCGTTATTTGATTACATG
1 --TAAGACCAC-GTCTGGGATACTGGCATCG-TATATGATTACATG
24097512 TAAGACCACGTCTGGGATACTGGCATCGTA
1 TAAGACCACGTCTGGGATACTGGCATCGTA
24097542 CGAGCTTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
42 2 0.03
43 46 0.77
44 9 0.15
45 3 0.05
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (42 bp):
TAAGACCACGTCTGGGATACTGGCATCGTATATGATTACATG
Found at i:24118866 original size:44 final size:43
Alignment explanation
Indices: 24118816--24118975 Score: 159
Period size: 43 Copynumber: 3.7 Consensus size: 43
24118806 TATGCGATAT
24118816 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTTAGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-TTTTAGATTTA
* * * *
24118860 CGTGTAACACCATGTCTGGGACATTGGCATCG-TATATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTTTTA-GATTTA
*
24118903 CGTGTAAGACC-CTGTTTGGGACAG-TGGCATCGTTATTTA-A-TTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-T-TTTAGATTTA
* * *
24118946 CATGTAAGACCACGTCTAGGACGCTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
24118976 TGTACGAATC
Statistics
Matches: 96, Mismatches: 12, Indels: 17
0.77 0.10 0.14
Matches are distributed among these distances:
42 4 0.04
43 58 0.60
44 31 0.32
46 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGTTTTAGATTTA
Found at i:24122180 original size:29 final size:29
Alignment explanation
Indices: 24122141--24122219 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
24122131 CTTAATAATC
*
24122141 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
24122171 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24122200 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24122220 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24133292 original size:42 final size:42
Alignment explanation
Indices: 24133245--24133327 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
24133235 AATATGTGTG
24133245 AAACGTTTGAAATTCAAAAATTTGAACTCTTGTTCTTATCCA
1 AAACGTTTGAAATTCAAAAATTTGAACTCTTGTTCTTATCCA
*
24133287 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
1 AAACGTTTGAAATTCAAAAATTTGAACTCTTGTTCTTATCC
24133328 CTTTGAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.39
Consensus pattern (42 bp):
AAACGTTTGAAATTCAAAAATTTGAACTCTTGTTCTTATCCA
Found at i:24135530 original size:450 final size:450
Alignment explanation
Indices: 24134689--24135590 Score: 1750
Period size: 450 Copynumber: 2.0 Consensus size: 450
24134679 ACATAAGTTT
24134689 TGTACCTAATTTGCTCCAAAGAGTCCTCCAAAAATGACTCAAAAACTTCACATCCCTGTCAGAAA
1 TGTACCTAATTTGCTCCAAAGAGTCCTCCAAAAATGACTCAAAAACTTCACATCCCTGTCAGAAA
*
24134754 CAATCGACCTAGGGATACCATGTAATCGTACAACATCTCTAAAGAACAAGTTAGCCACATTAATA
66 CAATCGACCTAGGGATACCATGTAATCGTACAACATCTCTAAAGAACAAGTTAGCCACATTAACA
24134819 GCATCATCAGTCTTATGGCATGAAATGAAATGTGCCATCTTCGAGAACCTATCAACCACAACAAA
131 GCATCATCAGTCTTATGGCATGAAATGAAATGTGCCATCTTCGAGAACCTATCAACCACAACAAA
* *
24134884 TATACTATCCCGACCTGTTCTAGTTCGAGGTAATCCCAAAATAAAGTCCATTGAAATATCAGTCC
196 TATACTATCCCGACCTGTTCTAGTTCGAGGCAATCCCAAAACAAAGTCCATTGAAATATCAGTCC
24134949 AAGGGGATTCAGGAATAGGTAAAGGTAAGTACATACCATGTGGTGAAACCTTCGATTTTGCTTTT
261 AAGGGGATTCAGGAATAGGTAAAGGTAAGTACATACCATGTGGTGAAACCTTCGATTTTGCTTTT
24135014 CGACAAGTCACACAACATTCACAATACCTTTCAACGTCCCTGTGTATCTTAGGCCAAAAAAGATG
326 CGACAAGTCACACAACATTCACAATACCTTTCAACGTCCCTGTGTATCTTAGGCCAAAAAAGATG
24135079 CTCTGTTAAGGTGTGTAACGTTTTAGTGACCCCAAAATGACCCATCAATCCACCTTCATG
391 CTCTGTTAAGGTGTGTAACGTTTTAGTGACCCCAAAATGACCCATCAATCCACCTTCATG
24135139 TGTACCTAATTTGCTCCAAAGAGTCCTCCAAAAATGACTCAAAAACTTCACATCCCTGTCAGAAA
1 TGTACCTAATTTGCTCCAAAGAGTCCTCCAAAAATGACTCAAAAACTTCACATCCCTGTCAGAAA
24135204 CAATCGACCTAGGGATACCATGTAATCGTACAACATCTCTAAAGAACAAGTTAGCCACATTAACA
66 CAATCGACCTAGGGATACCATGTAATCGTACAACATCTCTAAAGAACAAGTTAGCCACATTAACA
24135269 GCATCATCAGTCTTATGGCATGAAATGAAATGTGCCATCTTCGAGAACCTATCAACCACAACAAA
131 GCATCATCAGTCTTATGGCATGAAATGAAATGTGCCATCTTCGAGAACCTATCAACCACAACAAA
* * *
24135334 TATGCTATCCCTACCTGTTCTAGTTCGAGGCAATCCCAAAACAAAGTCCATTGAAATATCCGTCC
196 TATACTATCCCGACCTGTTCTAGTTCGAGGCAATCCCAAAACAAAGTCCATTGAAATATCAGTCC
24135399 AAGGGGATTCAGGAATAGGTAAAGGTAAGTACATACCATGTGGTGAAACCTTCGATTTTGCTTTT
261 AAGGGGATTCAGGAATAGGTAAAGGTAAGTACATACCATGTGGTGAAACCTTCGATTTTGCTTTT
24135464 CGACAAGTCACACAACATTCACAATACCTTTCAACGTCCCTGTGTATCTTAGGCCAAAAAAGATG
326 CGACAAGTCACACAACATTCACAATACCTTTCAACGTCCCTGTGTATCTTAGGCCAAAAAAGATG
24135529 CTCTGTTAAGGTGTGTAACGTTTTAGTGACCCCAAAATGACCCATCAATCCACCTTCATG
391 CTCTGTTAAGGTGTGTAACGTTTTAGTGACCCCAAAATGACCCATCAATCCACCTTCATG
24135589 TG
1 TG
24135591 CTTCACGGAT
Statistics
Matches: 446, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
450 446 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (450 bp):
TGTACCTAATTTGCTCCAAAGAGTCCTCCAAAAATGACTCAAAAACTTCACATCCCTGTCAGAAA
CAATCGACCTAGGGATACCATGTAATCGTACAACATCTCTAAAGAACAAGTTAGCCACATTAACA
GCATCATCAGTCTTATGGCATGAAATGAAATGTGCCATCTTCGAGAACCTATCAACCACAACAAA
TATACTATCCCGACCTGTTCTAGTTCGAGGCAATCCCAAAACAAAGTCCATTGAAATATCAGTCC
AAGGGGATTCAGGAATAGGTAAAGGTAAGTACATACCATGTGGTGAAACCTTCGATTTTGCTTTT
CGACAAGTCACACAACATTCACAATACCTTTCAACGTCCCTGTGTATCTTAGGCCAAAAAAGATG
CTCTGTTAAGGTGTGTAACGTTTTAGTGACCCCAAAATGACCCATCAATCCACCTTCATG
Found at i:24152857 original size:28 final size:28
Alignment explanation
Indices: 24152825--24152895 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
24152815 TGAACTTACC
**
24152825 TTGTGTTTATTATCCTAGTGGACTATAT
1 TTGTGTTTATTATCCTAGTAAACTATAT
* *
24152853 TTGTGTTTATTGTCCTAGTAAACTATCT
1 TTGTGTTTATTATCCTAGTAAACTATAT
* *
24152881 TCGTGTTTACTATCC
1 TTGTGTTTATTATCC
24152896 CAACAGACTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (28 bp):
TTGTGTTTATTATCCTAGTAAACTATAT
Found at i:24153172 original size:109 final size:110
Alignment explanation
Indices: 24153023--24153394 Score: 462
Period size: 109 Copynumber: 3.4 Consensus size: 110
24153013 TATACTTGGT
* * ** ** *
24153023 TGCCATAGCATCTTTCATCTATGGTCTTACACTGTATACCTTATATCTTGTACCATACTATCATG
1 TGCCATAGCGTCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCATG
24153088 GCGTCTTTCA-CACATGGTCTTACACTACATACCTCATACCAGAC
66 GCGTCTTTCATCACATGGTCTTACACTACATACCTCATACCAGAC
* * * * * *
24153132 TGCCTTAGTGTCTTTCATCTATTGTCTTACGCCATATACCTTATACCTTGTTCGATGTTGTCATG
1 TGCCATAGCGTCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCATG
* * * *
24153197 ACATCTTTCATCA-ATGGTCTTACGCTACGTACCTCATACCAGAC
66 GCGTCTTTCATCACATGGTCTTACACTACATACCTCATACCAGAC
* * * *
24153241 TACCATAGCGTCTTTCATCTATGGTCTTCCGCCATATGCCTTATATCTTGTACCATGTTGCCATG
1 TGCCATAGCGTCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCATG
* * * *
24153306 GCGTCTTTCATC-CATAGTCTTACACTACATACATTATACCAAAC
66 GCGTCTTTCATCACATGGTCTTACACTACATACCTCATACCAGAC
* * *
24153350 TGCCATAGCATCTTTTATCTATGGTTTTACGCCATATACCATTAT
1 TGCCATAGCGTCTTTCATCTATGGTCTTACGCCATATACC-TTAT
24153395 CACGGTGTCG
Statistics
Matches: 219, Mismatches: 41, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
109 213 0.97
110 6 0.03
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (110 bp):
TGCCATAGCGTCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCATG
GCGTCTTTCATCACATGGTCTTACACTACATACCTCATACCAGAC
Found at i:24153855 original size:26 final size:27
Alignment explanation
Indices: 24153821--24153876 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
24153811 TGAAAATTTA
* **
24153821 GGGTTTTTCAGTTGAATTGTGAACTAG
1 GGGTTTTCCAGTTGAATTACGAACTAG
24153848 GGGTTTTCCAGTTGAATTACGAACTAG
1 GGGTTTTCCAGTTGAATTACGAACTAG
24153875 GG
1 GG
24153877 CTTCGCCAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.36
Consensus pattern (27 bp):
GGGTTTTCCAGTTGAATTACGAACTAG
Found at i:24153885 original size:27 final size:27
Alignment explanation
Indices: 24153829--24153886 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
24153819 TAGGGTTTTT
** * **
24153829 CAGTTGAATTGTGAACTAGGGGTTTTC
1 CAGTTGAATTACGAACTAGGGCTTCGC
24153856 CAGTTGAATTACGAACTAGGGCTTCGC
1 CAGTTGAATTACGAACTAGGGCTTCGC
24153883 CAGT
1 CAGT
24153887 CAAAGATTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (27 bp):
CAGTTGAATTACGAACTAGGGCTTCGC
Found at i:24168620 original size:57 final size:57
Alignment explanation
Indices: 24168539--24168726 Score: 195
Period size: 57 Copynumber: 3.3 Consensus size: 57
24168529 TAAAATTTTG
* * * * * *
24168539 GAAAGGCAAGCATTGGTGGCGAACCTGTTAAAGGATAACATTTGTGGCAAAACTCTC
1 GAAAGGCAAGCCTTCGTGGTGAACCTATTAAAAGATAACATTTGTGGCAAAACTCTA
* * *
24168596 GAAACGCAAGCCTTTGTGGTGAACCTATTAAAAGATAGCATTTGTGGCAAAACTCTA
1 GAAAGGCAAGCCTTCGTGGTGAACCTATTAAAAGATAACATTTGTGGCAAAACTCTA
* * * * *
24168653 GAAAGGTAAGCCTTCGTGGTGAACCTCTTAAATA-A-CACACTTGTGGC-AATCTCTA
1 GAAAGGCAAGCCTTCGTGGTGAACCTATTAAA-AGATAACATTTGTGGCAAAACTCTA
*
24168708 GATAAGG-AAGCCTTTGTGG
1 GA-AAGGCAAGCCTTCGTGG
24168727 CTATCTCTAA
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
55 20 0.18
56 13 0.12
57 78 0.70
58 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (57 bp):
GAAAGGCAAGCCTTCGTGGTGAACCTATTAAAAGATAACATTTGTGGCAAAACTCTA
Found at i:24168657 original size:28 final size:28
Alignment explanation
Indices: 24168572--24168657 Score: 68
Period size: 28 Copynumber: 3.0 Consensus size: 28
24168562 CCTGTTAAAG
* *
24168572 GATAACATTTGTGGCAAAACTCTCGAAA
1 GATAGCATTTGTGGCAAAACTCTAGAAA
* ** * *
24168600 CGCA-AGCCTTTGTGGTGAACCTATTA-AAA
1 -G-ATAGCATTTGTGGCAAAACT-CTAGAAA
24168629 GATAGCATTTGTGGCAAAACTCTAGAAA
1 GATAGCATTTGTGGCAAAACTCTAGAAA
24168657 G
1 G
24168658 GTAAGCCTTC
Statistics
Matches: 41, Mismatches: 12, Indels: 9
0.66 0.19 0.15
Matches are distributed among these distances:
27 3 0.07
28 19 0.46
29 17 0.41
30 2 0.05
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (28 bp):
GATAGCATTTGTGGCAAAACTCTAGAAA
Found at i:24168724 original size:28 final size:28
Alignment explanation
Indices: 24168693--24168749 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
24168683 AATAACACAC
*
24168693 TTGTGGCAATCTCTAGATAAGGAA-GCCT
1 TTGTGGCAATCTCTA-AAAAGGAATGCCT
*
24168721 TTGTGGCTATCTCTAAAAAGGAATGCCT
1 TTGTGGCAATCTCTAAAAAGGAATGCCT
24168749 T
1 T
24168750 CGTGACGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 7 0.27
28 19 0.73
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (28 bp):
TTGTGGCAATCTCTAAAAAGGAATGCCT
Found at i:24171908 original size:37 final size:37
Alignment explanation
Indices: 24171858--24171936 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24171848 TTATTACGAA
* * *
24171858 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24171895 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24171932 GTCTT
1 GTCTT
24171937 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24172133 original size:47 final size:47
Alignment explanation
Indices: 24172055--24172465 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
24172045 CCCTTCGGGA
* * * * * *
24172055 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24172102 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24172149 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24172196 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24172243 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24172290 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24172337 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24172384 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24172431 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
24172466 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24175038 original size:40 final size:40
Alignment explanation
Indices: 24174994--24175205 Score: 228
Period size: 40 Copynumber: 5.3 Consensus size: 40
24174984 CATGATTACT
* * * * *
24174994 CTTCGGGACCTAGCCCGGATATAACCACAAGCTCAATTGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAATTGC
* * * *
24175034 CTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA-TGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-AATTGC
* * *
24175074 CTTCGGGTCTTAGCCCGGATGTATCAACTTGCACAATTGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAATTGC
* * * *
24175114 CTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAATTGC
* * * *
24175154 CTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAATTGC
24175194 CTTCGGGTCTTA
1 CTTCGGGTCTTA
24175206 NNNNNNNNNN
Statistics
Matches: 152, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 148 0.97
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAATTGC
Found at i:24175131 original size:80 final size:80
Alignment explanation
Indices: 24175027--24175205 Score: 279
Period size: 80 Copynumber: 2.2 Consensus size: 80
24175017 ACCACAAGCT
* *
24175027 CAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
*
24175092 ATGTATCAACTT-GCA
66 ATATATCAA-TTCGCA
* * *
24175107 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
24175172 ATATATCAATTCGCA
66 ATATATCAATTCGCA
*
24175187 CAAATGCCTTCGGGTCTTA
1 CAATTGCCTTCGGGTCTTA
24175206 NNNNNNNNNN
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 2 0.02
80 89 0.98
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (80 bp):
CAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
ATATATCAATTCGCA
Found at i:24176493 original size:40 final size:40
Alignment explanation
Indices: 24176449--24176674 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
24176439 GCTACTCGTT
* * *
24176449 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
24176489 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24176529 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24176569 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
24176609 CCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
24176650 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24176675 CATCATTCAA
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 155 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24184400 original size:48 final size:48
Alignment explanation
Indices: 24184311--24184404 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
24184301 TTTCTTGGCT
* *
24184311 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAATGGATTCAACCG
24184359 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAGA-GGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATA-ATGGATTCAAC
24184405 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
47 4 0.10
48 36 0.88
49 1 0.02
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAATGGATTCAACCG
Found at i:24186908 original size:48 final size:48
Alignment explanation
Indices: 24186826--24186919 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
24186816 TTTCTTGGCT
* * *
24186826 TAAAAATGCCTAAGTCAGCCTAATTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAATTTCCAACAATAAAGGATTCAACCG
*
24186874 TAAAAACGCCTAAGTTAG-CTCAA-TTCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AATTTC-CAACAATAAAGGATTCAAC
24186920 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 5 0.12
48 35 0.88
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.23
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAATTTCCAACAATAAAGGATTCAACCG
Found at i:24188749 original size:118 final size:119
Alignment explanation
Indices: 24188542--24188783 Score: 339
Period size: 118 Copynumber: 2.0 Consensus size: 119
24188532 GTTGTCAACA
* *
24188542 ATGGCCTTTACAAAACTAAATACACTTCGTTTAGCCTAGCATGAGGGTTCCTACGTTTCTATATT
1 ATGGCCTTTACAAAACTAAATACACTTCGTTTAACCTAGCATGAGGGTTCCTACGTTTCTACATT
* *
24188607 TTAGCAGATTACTCTCA-CCCC-CTCTC-GAAAATTTATCTACATGGTATCTTTG
66 TTAGCAGATTACTCTCACCCCCTCTCTCTG-AAATTTAGCAACATGGTATCTTTG
* * * *
24188659 ATGGCCTTTTCAAAATTAAGTACACTTTCGTTTAACCTAGCATGAGGGTTCCTACGTTTCTGCAT
1 ATGGCCTTTACAAAACTAAATACAC-TTCGTTTAACCTAGCATGAGGGTTCCTACGTTTCTACAT
* *
24188724 TTTAGCTGCTTACTCT-ACCACCCTCTCTCTGAAATTTAGCAACATGGTATCTTTG
65 TTTAGCAGATTACTCTCACC-CCCTCTCTCTGAAATTTAGCAACATGGTATCTTTG
24188779 ATGGC
1 ATGGC
24188784 AGGGTAAATG
Statistics
Matches: 110, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
117 23 0.21
118 51 0.46
119 3 0.03
120 32 0.29
121 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (119 bp):
ATGGCCTTTACAAAACTAAATACACTTCGTTTAACCTAGCATGAGGGTTCCTACGTTTCTACATT
TTAGCAGATTACTCTCACCCCCTCTCTCTGAAATTTAGCAACATGGTATCTTTG
Found at i:24193961 original size:45 final size:45
Alignment explanation
Indices: 24193881--24193967 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
24193871 CTATACGCCT
* ** *
24193881 AAAATGAGTAAGACCATAGTTGAACGATGTTATGGCATCATGACG
1 AAAATGAGTAAGACCATAGCTGAACGACATCATGGCATCATGACG
* *
24193926 AAAATGAGTAAGACCATGGCTGAAGGACATCATGGCATCATG
1 AAAATGAGTAAGACCATAGCTGAACGACATCATGGCATCATG
24193968 GTAAATAAGA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAGCTGAACGACATCATGGCATCATGACG
Found at i:24199185 original size:29 final size:28
Alignment explanation
Indices: 24199134--24199196 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
24199124 CAATATCCAT
* * *
24199134 CACTGGTACATAGTACCTGCTAAATAAAA
1 CACTAGTACAGAGTACCTACT-AATAAAA
* *
24199163 CACTAGTACAGAGTGCCTACTAATATAA
1 CACTAGTACAGAGTACCTACTAATAAAA
24199191 CACTAG
1 CACTAG
24199197 CACGAAGCCT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (28 bp):
CACTAGTACAGAGTACCTACTAATAAAA
Found at i:24199219 original size:26 final size:28
Alignment explanation
Indices: 24199149--24199219 Score: 67
Period size: 28 Copynumber: 2.6 Consensus size: 28
24199139 GTACATAGTA
* * *
24199149 CCTGCTAAATAAAACACTAGTACAGAGTG
1 CCTGCTAAAT-ATACACTAGCACAGAGAG
*
24199178 CCTACT-AATATAACACTAGCAC-GA-AG
1 CCTGCTAAATAT-ACACTAGCACAGAGAG
24199204 CCTGCTAAATATACAC
1 CCTGCTAAATATACAC
24199220 CGGTACAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
26 10 0.29
27 8 0.23
28 12 0.34
29 5 0.14
ACGTcount: A:0.41, C:0.25, G:0.13, T:0.21
Consensus pattern (28 bp):
CCTGCTAAATATACACTAGCACAGAGAG
Found at i:24204598 original size:27 final size:27
Alignment explanation
Indices: 24204568--24204622 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
24204558 TCCACAAGAA
* *
24204568 AGCCAGATGTATGCACATCAGAATCAG
1 AGCCAGATGCATCCACATCAGAATCAG
24204595 AGCCAGATGCATCCACATCAGAATCAG
1 AGCCAGATGCATCCACATCAGAATCAG
24204622 A
1 A
24204623 CGTAGCCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.16
Consensus pattern (27 bp):
AGCCAGATGCATCCACATCAGAATCAG
Found at i:24211168 original size:25 final size:25
Alignment explanation
Indices: 24211134--24211181 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
24211124 AATTGAGTTG
24211134 GTTTATTTTAAGTTTTAGTTGTATA
1 GTTTATTTTAAGTTTTAGTTGTATA
24211159 GTTTATTTTAAGTTTTAGTTGTA
1 GTTTATTTTAAGTTTTAGTTGTA
24211182 GTATTCATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (25 bp):
GTTTATTTTAAGTTTTAGTTGTATA
Found at i:24211996 original size:16 final size:16
Alignment explanation
Indices: 24211977--24212008 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
24211967 TTTTGTGTAT
24211977 TGTCGATGCAATATTC
1 TGTCGATGCAATATTC
24211993 TGTCGATGCAATATTC
1 TGTCGATGCAATATTC
24212009 AAGTTGCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (16 bp):
TGTCGATGCAATATTC
Found at i:24215507 original size:89 final size:92
Alignment explanation
Indices: 24215318--24215516 Score: 260
Period size: 89 Copynumber: 2.2 Consensus size: 92
24215308 AATTGGGTGC
*
24215318 AGCCAACAATTGAATAGAACCAATTGCAACAACCACCAATTGCCCAAAAAACAAAAAATAATAGC
1 AGCCAACAATTGAATAGAACCAATTGCAACAACCACCAAATGCCC-AAAAACAAAAAATAATAGC
*
24215383 AGTAGGGAACAATTGCAAAGACCTGAAG
65 AGCAGGGAACAATTGCAAAGACCTGAAG
* ** * *
24215411 AGCCAACAATTGAATAGAACCAATTGTATTAGCCACCAAATG-CC-GAAA-AAAAAATAATAGCA
1 AGCCAACAATTGAATAGAACCAATTGCAACAACCACCAAATGCCCAAAAACAAAAAATAATAGCA
* * * **
24215473 GCAGGGAATAGTTGCAGAGATGTGAAG
66 GCAGGGAACAATTGCAAAGACCTGAAG
24215500 AGCCAACAATTGAATAG
1 AGCCAACAATTGAATAG
24215517 TAAAGCAGTT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
89 52 0.55
90 3 0.03
92 2 0.02
93 37 0.39
ACGTcount: A:0.47, C:0.19, G:0.18, T:0.16
Consensus pattern (92 bp):
AGCCAACAATTGAATAGAACCAATTGCAACAACCACCAAATGCCCAAAAACAAAAAATAATAGCA
GCAGGGAACAATTGCAAAGACCTGAAG
Found at i:24216063 original size:19 final size:20
Alignment explanation
Indices: 24216040--24216112 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
24216030 AAAATCACAA
24216040 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTC
24216060 AAAAATTCAAAATAATTTT-
1 AAAAATTCAAAATAATTTTC
* * *
24216079 TAAAATTCAGAAT-ATTTATA
1 AAAAATTCAAAATAATTT-TC
24216099 AAAAATTCCAAAAT
1 AAAAATT-CAAAAT
24216113 TTTTATTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
18 4 0.09
19 12 0.26
20 25 0.54
21 5 0.11
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.34
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTC
Found at i:24217921 original size:14 final size:14
Alignment explanation
Indices: 24217902--24217929 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24217892 CACTGTACAA
24217902 ATATGAAATGGAAT
1 ATATGAAATGGAAT
24217916 ATATGAAATGGAAT
1 ATATGAAATGGAAT
24217930 GCAAGCAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (14 bp):
ATATGAAATGGAAT
Found at i:24232398 original size:580 final size:576
Alignment explanation
Indices: 24229500--24233126 Score: 5754
Period size: 576 Copynumber: 6.3 Consensus size: 576
24229490 ATAGCAAAGG
* * *
24229500 ATGCTCACGACGTTGTTCATACACCTTCCCTAAGTTACATAAACACTTTCCACACTTGTAACAAA
1 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
*
24229565 TTAAAGGTTCACGATAATTATCAAATTCATCCCACCAAACCATTT-ATATACTAAAATAAACAGC
66 TTAAAGGTTCACGATAATTATCTAATTCATCCCACCAAACC-TTTAATATACTAAAATAAACAGC
*
24229629 AACACTCATAGTCTTGGTTTGCTCACAATGATTAATATTTGCTTAGTAAGTCAATTTATGCACTC
130 AACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTC
* *
24229694 TCCAATAGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCATTTAGCA
195 TCCAATGGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCA
24229759 AGGGCTTATTCTTTAAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATTGGGCA
260 AGGGCTTATTCTTTAAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATTGGGCA
*
24229824 GGCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTTGGGAC
325 GGCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTTGTGAC
* *
24229889 TTGGTAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAAAGGCTGAGTTTAGATCAATGG
390 TTGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAATGG
24229954 CTCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATAACT
455 CTCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATAACT
* *
24230019 TCACCAATGAAGTTGTATCATGATAGCAAAGCTGCCATGACGTTGATGAAGCCTGTC
520 TCACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCGGTC
* * *
24230076 ATGCTCACAACGTTGCTCATGCACCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
1 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
* * *
24230141 TTAAATGTTCACGATAATTATCTAATTCACCCCACTAAACCTTTAATATACTAAAATAAACAGCA
66 TTAAAGGTTCACGATAATTATCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
*
24230206 ACACTCATAGTCTTGGTGTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTCT
131 ACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTCT
* * *
24230271 CCAATGGAAGAACATGAAGAAGCAGTGTTTTGGATTCTGAGATACTTAAAGAGTTCACTTAGCAA
196 CCAATGGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCAA
* * * *
24230336 GGGCTTATTCTTTAAAAAA-TCGAACAAAGAGGAA-TTGA-CTTATACATATGCAAATTTGGCAG
261 GGGCTTATTCTTTAAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATTGGGCAG
* * * * * *
24230398 GCTTAATAACATATAAAATATCTAAATCAGGATACTGTACATTTTTTTGGGGAAACCTTGTGACT
326 GCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTTGTGACT
* * *
24230463 TGGAAAAGTAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTAAGTTTAGATCAATGGC
391 TGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAATGGC
*
24230528 TCAAGGAATTTGTGAAATGATGTGGTTAAGAAGAATTATAGAAGAGCTGAGGAAACCAATAACTT
456 TCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATAACTT
* *
24230593 CACCAATGAAGTTGTATCGTGATAGCAAAGTTACCATGACGTTGATGAAGCCGGTC
521 CACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCGGTC
* * * * *
24230649 ATGCTTACGACGCTGTTCATGCGCCTTCCTTAAGTTACACAAACACTTTCCACACTTACAACAAA
1 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
*
24230714 TTAAAGGTTCACG---ATTAGCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
66 TTAAAGGTTCACGATAATTATCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
* * * * *
24230776 ACACTCATATTCTTGGTATGCTCACAACGATTAGTATTTGCTAAGTAAGTCAATTTATGTACTCT
131 ACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTCT
* * * *
24230841 CTAATGGAGAAACATGAAGAAGCAGTGTTTTGGATTCTAAGATACTTGAAGAGTTCACTTAGCAA
196 CCAATGGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCAA
* *
24230906 GGTCTTATTCTTTAAAAAATTCGAACAAAAAGGAATTTAAGCTTATACA-ATGCAGATTGGGCAG
261 GGGCTTATTCTTTAAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATTGGGCAG
* * * * *
24230970 GCTCAATAACGGATAGGAGATCTACATCAAGATACTGTACATTTGTTT-GGGAAACCTTATGACT
326 GCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTTGTGACT
24231034 TGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAATGGC
391 TGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAATGGC
* * * * * * *
24231099 TCAAGAAATTTGTGAAATGATATGGTTAAAAAGAGTTATAGAAGAGTTTAGGAAATCGATAACTG
456 TCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATAACT-
* * *
24231164 T-ACTAATGAAGTTGTATTGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCAGTC
520 TCACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCGGTC
* * * *
24231220 ATGCTCACGACGTTGTTTATGCGCCTTTCCTAAGTTACATAAACACTTTTCACACTTGAAACAAA
1 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
* * *
24231285 TTAAAGGTTCACGATTATTATCTAATTCATCCCACCAAAACTTTAATATACTAAAATAAATAGCA
66 TTAAAGGTTCACGATAATTATCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
* * * *
24231350 ACACTCATATTCTAGGTTTGCTCACAATGATTAATATTTGTTTAGTAAGTCAATTTATGCACTCT
131 ACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTCT
* *
24231415 CTAATGGAGGAACATGAAGAAGCAATGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCAA
196 CCAATGGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCAA
* * * * * *
24231480 GGTCTTATTCTTTGAAAAAGTCAAACAAATAGGAATTTAAGCTTATATAGATGCAGATTGGGCAG
261 GGGCTTATTCTTTAAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATTGGGCAG
*
24231545 GCTCAATAACAGATAGAAGATCTATATCAGGATACTATACATTTGTTTGGGGAAACCTTGTGACT
326 GCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTTGTGACT
* * * *
24231610 TGGCAAAGCAAAAAATAAAGTGTTGTACCAAGAAGTAGTGTAAAGGCTGAGTTTAGATTAATAGC
391 TGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAATGGC
*
24231675 TCAACGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATAACTT
456 TCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATAACTT
*
24231740 CACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCAGTC
521 CACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCGGTC
* *
24231796 ATGCTCATGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGTAACAAA
1 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
* *
24231861 TTAAAGTTTCACGATAATTATCTAATTAATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
66 TTAAAGGTTCACGATAATTATCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
* * *
24231926 ACACTGATAGTCTTGGTTTGCTCACAATGATTAATATTTGCTTAGTAAGTCAATTTATGTACTCT
131 ACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTCT
* * * * *
24231991 CCAAAGGAGGAACATGAAGAAGCAGTGCTTCAGATTCTGAGATACTTGAAGAGTTCAGTTAGCAG
196 CCAATGGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCAA
* *
24232056 GGGCTTATTCTTTAAAAAATTGGAACAAAGAGGAATTTAAGCTTATACAGATGCAAATTGGGCAG
261 GGGCTTATTCTTTAAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATT--G--G
* * * *
24232121 GCAGGCTCAATAATAAATAGAAGATCTATATCAAGATACTGTACATTTGTTTGGGGAAACCTTAT
322 GCAGGCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTTGT
*
24232186 GACTTGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCCGAGTTTAGATCAA
387 GACTTGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAA
** *
24232251 CAGCTTAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATA
452 TGGCTCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATA
*
24232316 ACTTCACCAATGAAGTTGTATCGTGATAGCAAAGCTACCATGACGTTGATGAAGCCGGTC
517 ACTTCACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCGGTC
* ** * *
24232376 AGGCTCACGACGTTGTTCATGCGCCTTCTTTAAGTTACATAAACACTTTCCACAGTTGCAACACA
1 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
* * *
24232441 TTAAAGGTTCACGATAATTA-CGTAATTCATCCCACTAAACCTTTAATTTACTAAAATAAATAGC
66 TTAAAGGTTCACGATAATTATC-TAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGC
* * *
24232505 AACACTAATAGTCTTAGTTTGCTCACAACGATTAATATTTGCTTCGTAAGTCAATTTATGCACTC
130 AACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTC
** *
24232570 TCCAATGGAGGAACATGAAGAAATAGTGTTTTGGATTCTGAGATACTTGAAGAGTTCACTTAGCA
195 TCCAATGGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCA
* *
24232635 AGGTCTTATTCTTTAAAAAAATT-GAACAAAGAGGAATTGAAGCTTATACAGATGCAGATTGGGC
260 AGGGCTTATTCTTT-AAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATT--G-
24232699 AGGCAGGCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTT
321 -GGCAGGCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTT
* *
24232764 GTAACTTGGCAAAAGCAAAAAATGAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGAT
385 GTGACTTGGC-AAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGAT
*
24232829 CAATGGCTCAACGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCA
449 CAATGGCTCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCA
*
24232894 ATAACTTCACCAATGAAGTTGTATCGTGATAGCAAAGGTGCCATGACGTTGATGAAGCCGGTC
514 ATAACTTCACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCGGTC
24232957 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
1 ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
24233022 TTAAAGGTTCACG---ATTATCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
66 TTAAAGGTTCACGATAATTATCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
* * *
24233084 ACACTCATAGTCTTGGTGTGCTCACAACAATTAGTATTTGCTT
131 ACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTT
24233127 TTAATTGTTG
Statistics
Matches: 2798, Mismatches: 234, Indels: 36
0.91 0.08 0.01
Matches are distributed among these distances:
570 184 0.07
571 266 0.10
572 56 0.02
573 333 0.12
574 212 0.08
575 77 0.03
576 734 0.26
578 83 0.03
579 2 0.00
580 596 0.21
581 255 0.09
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (576 bp):
ATGCTCACGACGTTGTTCATGCGCCTTCCCTAAGTTACATAAACACTTTCCACACTTGCAACAAA
TTAAAGGTTCACGATAATTATCTAATTCATCCCACCAAACCTTTAATATACTAAAATAAACAGCA
ACACTCATAGTCTTGGTTTGCTCACAACGATTAATATTTGCTTAGTAAGTCAATTTATGCACTCT
CCAATGGAGGAACATGAAGAAGCAGTGTTTCGGATTCTGAGATACTTGAAGAGTTCACTTAGCAA
GGGCTTATTCTTTAAAAAATTCGAACAAAGAGGAATTTAAGCTTATACAGATGCAGATTGGGCAG
GCTCAATAACAGATAGAAGATCTATATCAGGATACTGTACATTTGTTTGGGGAAACCTTGTGACT
TGGCAAAGCAAAAAATAAAGTGTTGTAGCAAGAAGTAGTGTAGAGGCTGAGTTTAGATCAATGGC
TCAAGGAATTTGTGAAATGATGTGGTTAAAAAGAATTATAGAAGAGCTGAGGAAACCAATAACTT
CACCAATGAAGTTGTATCGTGATAGCAAAGCTGCCATGACGTTGATGAAGCCGGTC
Found at i:24234357 original size:23 final size:24
Alignment explanation
Indices: 24234323--24234370 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
24234313 GGTTTTCAAC
24234323 ATTTCAATCTTTT-ACACTAACAT
1 ATTTCAATCTTTTAACACTAACAT
24234346 ATTT-AATACTTTTAGACACTAACAT
1 ATTTCAAT-CTTTTA-ACACTAACAT
24234371 TTTGATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 3 0.14
23 9 0.41
25 10 0.45
ACGTcount: A:0.38, C:0.19, G:0.02, T:0.42
Consensus pattern (24 bp):
ATTTCAATCTTTTAACACTAACAT
Found at i:24238646 original size:25 final size:25
Alignment explanation
Indices: 24238618--24238669 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
24238608 TAGGGGCAAA
*
24238618 GTGGCAACACAAGTGTGGTAAGGAG
1 GTGGCAACACAAGTGTGGTAAGAAG
** *
24238643 GTGGCGTCACAGGTGTGGTAAGAAG
1 GTGGCAACACAAGTGTGGTAAGAAG
24238668 GT
1 GT
24238670 CAGATGTTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.42, T:0.19
Consensus pattern (25 bp):
GTGGCAACACAAGTGTGGTAAGAAG
Found at i:24240102 original size:23 final size:23
Alignment explanation
Indices: 24240066--24240109 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
24240056 GTGGGCCCTG
*
24240066 TAATATCCCAAAAATTACTACTA
1 TAATACCCCAAAAATTACTACTA
*
24240089 TAATACCCCGAAAATTACTAC
1 TAATACCCCAAAAATTACTAC
24240110 AGTAAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.27
Consensus pattern (23 bp):
TAATACCCCAAAAATTACTACTA
Found at i:24242598 original size:27 final size:27
Alignment explanation
Indices: 24242499--24242585 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
24242489 AAAAGGTTGT
*
24242499 TAAAATGACCGAAATA-CCCCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
* *
24242525 TAAAATAACCAAAATACCCTCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
24242552 TAAAATGACCAAAATACCCCCATAGGG
1 TAAAATGACCAAAATACCCCCATAGGG
24242579 TAAAATG
1 TAAAATG
24242586 GCTGTTATAC
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.25
27 41 0.75
ACGTcount: A:0.46, C:0.22, G:0.15, T:0.17
Consensus pattern (27 bp):
TAAAATGACCAAAATACCCCCATAGGG
Found at i:24251391 original size:16 final size:16
Alignment explanation
Indices: 24251370--24251402 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
24251360 TGAGAAATTG
24251370 ATGCTCAAAGTAAGCT
1 ATGCTCAAAGTAAGCT
24251386 ATGCTCAAAGTAAGCT
1 ATGCTCAAAGTAAGCT
24251402 A
1 A
24251403 CTTGGATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (16 bp):
ATGCTCAAAGTAAGCT
Found at i:24252204 original size:329 final size:329
Alignment explanation
Indices: 24251597--24252259 Score: 1254
Period size: 329 Copynumber: 2.0 Consensus size: 329
24251587 GTGGGCAACA
*
24251597 TGAAATGTCTGGACCGGTCGGACACAAATGGGACTACAGATATTTTAGCCCAACACGAATTTATT
1 TGAAATGTCTGGACCGGTCGGACACAAATGGGACTACAAATATTTTAGCCCAACACGAATTTATT
24251662 TTCCTCAGTAGAAAAAATTTGCTTATATATGAAAACTTATCCTATTGAATTGATTCCAATAAATC
66 TTCCTCAGTAGAAAAAATTTGCTTATATATGAAAACTTATCCTATTGAATTGATTCCAATAAATC
*
24251727 TATTTAAATATTTGATTTAATGACAAATTTTGGGGCTATTTTTCCATAATTACAACACTCTCCAT
131 TATTTAAATATTTGATTTAATGACAAAGTTTGGGGCTATTTTTCCATAATTACAACACTCTCCAT
24251792 GCCTATAAAAGGCCATGATTCTGAATGGTTTTTTGGTACACTTTCATACTTTCTAAGAATTTCTC
196 GCCTATAAAAGGCCATGATTCTGAATGGTTTTTTGGTACACTTTCATACTTTCTAAGAATTTCTC
* *
24251857 TTACCGAAATTTTGTTATTCTAAAAAATCTCCTTTTCCATCTTTCGTGTTTTCTAAATATTCCGA
261 TTACCAAAATTCTGTTATTCTAAAAAATCTCCTTTTCCATCTTTCGTGTTTTCTAAATATTCCGA
24251922 TGAT
326 TGAT
* *
24251926 TGAAATGTCTGGACCGGTCGGACACAAATGGGCCTGCAAATATTTTAGCCCAACACGAATTTATT
1 TGAAATGTCTGGACCGGTCGGACACAAATGGGACTACAAATATTTTAGCCCAACACGAATTTATT
*
24251991 TTCCTCAGTAGAAAAAATTTGCTTATATATGAAAACTTATCTTATTGAATTGATTCCAATAAATC
66 TTCCTCAGTAGAAAAAATTTGCTTATATATGAAAACTTATCCTATTGAATTGATTCCAATAAATC
24252056 TATTTAAATATTTGATTTAATGACAAAGTTTGGGGCTATTTTTCCATAATTACAACACTCTCCAT
131 TATTTAAATATTTGATTTAATGACAAAGTTTGGGGCTATTTTTCCATAATTACAACACTCTCCAT
24252121 GCCTATAAAAGGCCATGATTCTGAATGGTTTTTTGGTACACTTTCATACTTTCTAAGAATTTCTC
196 GCCTATAAAAGGCCATGATTCTGAATGGTTTTTTGGTACACTTTCATACTTTCTAAGAATTTCTC
24252186 TTACCAAAATTCTGTTATTCTAAAAAATCTCCTTTTCCATCTTTCGTGTTTTCTAAATATTCCGA
261 TTACCAAAATTCTGTTATTCTAAAAAATCTCCTTTTCCATCTTTCGTGTTTTCTAAATATTCCGA
24252251 TGAT
326 TGAT
*
24252255 AGAAA
1 TGAAA
24252260 AAGACATTGT
Statistics
Matches: 326, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
329 326 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (329 bp):
TGAAATGTCTGGACCGGTCGGACACAAATGGGACTACAAATATTTTAGCCCAACACGAATTTATT
TTCCTCAGTAGAAAAAATTTGCTTATATATGAAAACTTATCCTATTGAATTGATTCCAATAAATC
TATTTAAATATTTGATTTAATGACAAAGTTTGGGGCTATTTTTCCATAATTACAACACTCTCCAT
GCCTATAAAAGGCCATGATTCTGAATGGTTTTTTGGTACACTTTCATACTTTCTAAGAATTTCTC
TTACCAAAATTCTGTTATTCTAAAAAATCTCCTTTTCCATCTTTCGTGTTTTCTAAATATTCCGA
TGAT
Found at i:24256338 original size:78 final size:78
Alignment explanation
Indices: 24256140--24256493 Score: 385
Period size: 78 Copynumber: 4.6 Consensus size: 78
24256130 GGGAAATTAA
* *
24256140 AAGT-AAAT-AAAATCATTTCAGGATTGATTCCC-ACGTTCAACGATTTTATTCCAAATTTGTTT
1 AAGTAAAATAAAAATCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
*
24256202 TA-TTCAAAAAAC
66 TATTTCCAAAAAC
* ** ** * * *
24256214 AAGTAAAATAAAAAAAATTATTTCGATATTGATTCCCGTTGTTCAACGATTTTATTTCAAAATTC
1 AAGTAAAAT---AAAAATCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTG
**
24256279 TTTTATTTTTAAAAAC
63 TTTTATTTCCAAAAAC
* *
24256295 GAGTAAAATAAAAATCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
1 AAGTAAAATAAAAATCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
*
24256360 TATTTCCAAAAAT
66 TATTTCCAAAAAC
* * * ** * *
24256373 GAGTAAAATAAAAATCATTTCTGGATTGGTTCCCTTCATTCAACGATTTCATTCCAAATTTGTTT
1 AAGTAAAATAAAAATCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
24256438 TATTTCCAAAAAC
66 TATTTCCAAAAAC
* * * * *
24256451 AAGTAACAT-AGAATCCTTTTCGGGATTGATTGCCACCGTTCAA
1 AAGTAAAATAAAAAT-CATTTCGGGATTGATTCCCGCCGTTCAA
24256494 TGGATTTATT
Statistics
Matches: 230, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
74 4 0.02
75 4 0.02
77 4 0.02
78 155 0.67
79 20 0.09
80 27 0.12
81 16 0.07
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (78 bp):
AAGTAAAATAAAAATCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
TATTTCCAAAAAC
Found at i:24266319 original size:7 final size:7
Alignment explanation
Indices: 24266309--24266335 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
24266299 GAGATGAGAA
24266309 GGATGAG
1 GGATGAG
24266316 GGATGAG
1 GGATGAG
24266323 GGATGAG
1 GGATGAG
24266330 GGATGA
1 GGATGA
24266336 TTGAAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.56, T:0.15
Consensus pattern (7 bp):
GGATGAG
Found at i:24267125 original size:285 final size:285
Alignment explanation
Indices: 24266615--24267184 Score: 1140
Period size: 285 Copynumber: 2.0 Consensus size: 285
24266605 TCAGCCATGT
24266615 GGAGCCGAAAATTGGGTTGACTTGGTTGCCACTTTGGACGGTTTTGCAATTAGAAGAAAACTCTC
1 GGAGCCGAAAATTGGGTTGACTTGGTTGCCACTTTGGACGGTTTTGCAATTAGAAGAAAACTCTC
24266680 AGGCCTGTCAAAAATAGTAGATAGTTTAGAGGACCAAATGAATTAATTTAACCACTTTAATTAAT
66 AGGCCTGTCAAAAATAGTAGATAGTTTAGAGGACCAAATGAATTAATTTAACCACTTTAATTAAT
24266745 CAATTTGTTTAATTAATTAAACCCAATTTTATTAATGAAATATTTAAAATGAATTATTAAAATAT
131 CAATTTGTTTAATTAATTAAACCCAATTTTATTAATGAAATATTTAAAATGAATTATTAAAATAT
24266810 AATATAATATTTTATTGTTTAATTTAATCATGCTTGACCCACTTCATAGCTTAAAAATATAATAT
196 AATATAATATTTTATTGTTTAATTTAATCATGCTTGACCCACTTCATAGCTTAAAAATATAATAT
24266875 GCTTAAATTAATATAAAATAAGCCA
261 GCTTAAATTAATATAAAATAAGCCA
24266900 GGAGCCGAAAATTGGGTTGACTTGGTTGCCACTTTGGACGGTTTTGCAATTAGAAGAAAACTCTC
1 GGAGCCGAAAATTGGGTTGACTTGGTTGCCACTTTGGACGGTTTTGCAATTAGAAGAAAACTCTC
24266965 AGGCCTGTCAAAAATAGTAGATAGTTTAGAGGACCAAATGAATTAATTTAACCACTTTAATTAAT
66 AGGCCTGTCAAAAATAGTAGATAGTTTAGAGGACCAAATGAATTAATTTAACCACTTTAATTAAT
24267030 CAATTTGTTTAATTAATTAAACCCAATTTTATTAATGAAATATTTAAAATGAATTATTAAAATAT
131 CAATTTGTTTAATTAATTAAACCCAATTTTATTAATGAAATATTTAAAATGAATTATTAAAATAT
24267095 AATATAATATTTTATTGTTTAATTTAATCATGCTTGACCCACTTCATAGCTTAAAAATATAATAT
196 AATATAATATTTTATTGTTTAATTTAATCATGCTTGACCCACTTCATAGCTTAAAAATATAATAT
24267160 GCTTAAATTAATATAAAATAAGCCA
261 GCTTAAATTAATATAAAATAAGCCA
24267185 TTTTATGCAT
Statistics
Matches: 285, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
285 285 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (285 bp):
GGAGCCGAAAATTGGGTTGACTTGGTTGCCACTTTGGACGGTTTTGCAATTAGAAGAAAACTCTC
AGGCCTGTCAAAAATAGTAGATAGTTTAGAGGACCAAATGAATTAATTTAACCACTTTAATTAAT
CAATTTGTTTAATTAATTAAACCCAATTTTATTAATGAAATATTTAAAATGAATTATTAAAATAT
AATATAATATTTTATTGTTTAATTTAATCATGCTTGACCCACTTCATAGCTTAAAAATATAATAT
GCTTAAATTAATATAAAATAAGCCA
Found at i:24272455 original size:10 final size:10
Alignment explanation
Indices: 24272440--24272506 Score: 95
Period size: 10 Copynumber: 6.9 Consensus size: 10
24272430 TATATTTTCT
24272440 TTATATATTA
1 TTATATATTA
24272450 -T-TATATTA
1 TTATATATTA
*
24272458 TTA-ACATTA
1 TTATATATTA
24272467 TTTATATATTA
1 -TTATATATTA
24272478 TTATATATTA
1 TTATATATTA
24272488 TTATATATTA
1 TTATATATTA
24272498 TTATATATT
1 TTATATATT
24272507 TAAATTTATA
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
8 7 0.14
9 7 0.14
10 32 0.63
11 5 0.10
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (10 bp):
TTATATATTA
Found at i:24272696 original size:21 final size:21
Alignment explanation
Indices: 24272656--24272694 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
24272646 AAATCATGGA
24272656 TAAATCCAAGCGATTCTTTCT
1 TAAATCCAAGCGATTCTTTCT
24272677 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGATTCTTT
24272695 TCATAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (21 bp):
TAAATCCAAGCGATTCTTTCT
Found at i:24274635 original size:15 final size:15
Alignment explanation
Indices: 24274615--24274651 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
24274605 AAGAAGAAAG
24274615 ATTAAATCAATCTTA
1 ATTAAATCAATCTTA
**
24274630 ATTAAATTGATCTTA
1 ATTAAATCAATCTTA
24274645 ATTAAAT
1 ATTAAAT
24274652 TGTGGATTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (15 bp):
ATTAAATCAATCTTA
Found at i:24274652 original size:15 final size:15
Alignment explanation
Indices: 24274624--24274653 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24274614 GATTAAATCA
24274624 ATCTTAATTAAATTG
1 ATCTTAATTAAATTG
24274639 ATCTTAATTAAATTG
1 ATCTTAATTAAATTG
24274654 TGGATTGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (15 bp):
ATCTTAATTAAATTG
Found at i:24279671 original size:559 final size:560
Alignment explanation
Indices: 24278609--24279697 Score: 1611
Period size: 559 Copynumber: 1.9 Consensus size: 560
24278599 TATTTTTAAG
24278609 CTATAAAGTGGGTCATGCATGATTAAATTAAATAATAAAAATATAAAGTTATATTTAATAATTCA
1 CTATAAAGTGGGTCATGCATGATTAAATTAAATAATAAAAATATAAAGTTATATTTAATAATTCA
* * *
24278674 TTTTTAATATTTCATTACTAAATTGAGTTTTAATTAATTAAATAAATAAATTAATTAAAGTGGTT
66 TTTTAAATATTTCATTAATAAATTGAGGTTTAATTAATTAAATAAATAAATTAATTAAAGTGGTT
*
24278739 AAATTCTATTATTTGGTCCTCTAAACTATCTACTATTTTTTGACAGGGCTAAGAGTTTTCTTCTA
131 AAATTCAATTATTTGGTCCTCTAAACTATCTACTATTTTTTGACAGGGCTAAGAGTTTTCTTCTA
* * * * *
24278804 ATTGCAAAACCGTCCAAATTGGGGACCAATTCAACCCAATTTTTGGCTGCACGTGGATGTCATAA
196 ATTGCAAAACCGTCCAAAGTGGGGACCAAGTCAAACCAATTTTCGGCTGCACATGGATGTCATAA
* *
24278869 ACCATTTTTTTGGTTTAATTATATAAAGTACTTGAAGAGTTAAAGAAATCAGAGATTTTCTCGAA
261 ACCATTTTTTTGGTTTAATTACATAAAGCACTTGAAGAGTTAAAGAAATCAGAGATTTTCTCGAA
* * * *
24278934 GATTTACTGATGACCGATTTAGTGCTGAGTTGTTGTGACACTCAAATTGACCAAAAATCAAGGAA
326 GATTTACTGATGACCGATTTAATCCTGAGTTGTTGTGACACTCAAATTGAACAAAAATCAAGAAA
* * *
24278999 AAATCAGCCACCTTTCCTCAATTCATGGCCGGCCACTCTTGGAGGAAGTTTCAAAGGATGGACAC
391 AAATCAGCCACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAAGTTTCAAAGGATAGACAC
*
24279064 TCCTATTTTTAGCAAACTAGCTCCCTTGCCTCACCAATAAATAAGAGCTCATTTCTCACTTTTTC
456 TCCTAATTTTAGCAAACTAGCTCCCTTGCCTCACCAATAAATAAGAGCTCATTTCTCACTTTTTC
24279129 -ATCATCCCTCATCTCATCATCTCTCACTCATTCATCATT
521 AATCATCCCTCATCTCATCATCTCTCACTCATTCATCATT
* **
24279168 CTATGAAGTGGGTCATGCATGATTAAATTAAATAAT-AAAATATAATTTTATATTTTAATAATTC
1 CTATAAAGTGGGTCATGCATGATTAAATTAAATAATAAAAATATAAAGTTATA-TTTAATAATTC
* ** *
24279232 ATTTTAAATATTTCATTAATAAAATT-AGGTTTAATTAATTAAGTAAATTGATTAATTATAGTGG
65 ATTTTAAATATTTCATTAAT-AAATTGAGGTTTAATTAATTAAATAAATAAATTAATTAAAGTGG
** * * *
24279296 TTAAATT-AATTCATTTGGTCCTCTAAACTATCTGTTATTTTTT-ATAGGTCTGAGAGTTTT-TT
129 TTAAATTCAATT-ATTTGGTCCTCTAAACTATCTACTATTTTTTGACAGGGCTAAGAGTTTTCTT
* *** *
24279358 CTAATTGTAAAACCGTCCAAAGTGGGGACCAAGTCAAACCAATTTTCGGCTGCACATTTCTGATT
193 CTAATTGCAAAACCGTCCAAAGTGGGGACCAAGTCAAACCAATTTTCGGCTGCACATGGATG-TC
* * * *
24279423 ATAAACCA-TTTTTTGGTTTAATTACATAAGGCCCTTGAAGAGTTAAAGAAATCATATATTTATC
257 ATAAACCATTTTTTTGGTTTAATTACATAAAGCACTTGAAGAGTTAAAGAAATCAGAGATTT-TC
* * *
24279487 T-GAAGATTTGCTGGA-GACCGAGTCTTAATCCTGAGTTGTTGTGGCATTCAAATTGAACAAAAA
321 TCGAAGATTTACT-GATGACCGA-T-TTAATCCTGAGTTGTTGTGACACTCAAATTGAACAAAAA
* *
24279550 TCAAGAAAAAATTAGCCACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAGGTTTCAAAGG
383 TCAAGAAAAAATCAGCCACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAAGTTTCAAAGG
* * *
24279615 ATAGACACTCCTAATTTTAGCAAGCTAGTTCCCTTGCCTCACCTATAAATAAGAGCTCATTTCTC
448 ATAGACACTCCTAATTTTAGCAAACTAGCTCCCTTGCCTCACCAATAAATAAGAGCTCATTTCTC
24279680 ACTTTTTCAATCATCCCT
513 ACTTTTTCAATCATCCCT
24279698 AATCCCTCAT
Statistics
Matches: 473, Mismatches: 48, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
557 118 0.25
558 46 0.10
559 295 0.62
560 14 0.03
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (560 bp):
CTATAAAGTGGGTCATGCATGATTAAATTAAATAATAAAAATATAAAGTTATATTTAATAATTCA
TTTTAAATATTTCATTAATAAATTGAGGTTTAATTAATTAAATAAATAAATTAATTAAAGTGGTT
AAATTCAATTATTTGGTCCTCTAAACTATCTACTATTTTTTGACAGGGCTAAGAGTTTTCTTCTA
ATTGCAAAACCGTCCAAAGTGGGGACCAAGTCAAACCAATTTTCGGCTGCACATGGATGTCATAA
ACCATTTTTTTGGTTTAATTACATAAAGCACTTGAAGAGTTAAAGAAATCAGAGATTTTCTCGAA
GATTTACTGATGACCGATTTAATCCTGAGTTGTTGTGACACTCAAATTGAACAAAAATCAAGAAA
AAATCAGCCACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAAGTTTCAAAGGATAGACAC
TCCTAATTTTAGCAAACTAGCTCCCTTGCCTCACCAATAAATAAGAGCTCATTTCTCACTTTTTC
AATCATCCCTCATCTCATCATCTCTCACTCATTCATCATT
Found at i:24279704 original size:7 final size:7
Alignment explanation
Indices: 24279690--24279732 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
24279680 ACTTTTTCAA
24279690 TCATCCC
1 TCATCCC
*
24279697 TAATCCC
1 TCATCCC
24279704 TCATCCC
1 TCATCCC
24279711 TCATCCTTC
1 TCATCC--C
*
24279720 TCATCTC
1 TCATCCC
24279727 TCATCC
1 TCATCC
24279733 TCTCTCTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
7 24 0.80
9 6 0.20
ACGTcount: A:0.16, C:0.49, G:0.00, T:0.35
Consensus pattern (7 bp):
TCATCCC
Found at i:24279724 original size:16 final size:16
Alignment explanation
Indices: 24279690--24279738 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
24279680 ACTTTTTCAA
*
24279690 TCATCCCTAATCC--C
1 TCATCCCTCATCCTTC
24279704 TCATCCCTCATCCTTC
1 TCATCCCTCATCCTTC
*
24279720 TCATCTCTCATCCTCTC
1 TCATCCCTCATCCT-TC
24279737 TC
1 TC
24279739 TCAACTCTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 12 0.40
16 14 0.47
17 4 0.13
ACGTcount: A:0.14, C:0.49, G:0.00, T:0.37
Consensus pattern (16 bp):
TCATCCCTCATCCTTC
Found at i:24287528 original size:282 final size:282
Alignment explanation
Indices: 24287024--24287587 Score: 1101
Period size: 282 Copynumber: 2.0 Consensus size: 282
24287014 AAGTATGTTT
24287024 CAAATCATTCTTTCATAAGTATGTCTTAATAAATGAATGTTTGGAGAAATTTTTTTTAATAAGAT
1 CAAATCATTCTTTCATAAGTATGTCTTAATAAATGAATGTTTGGAGAAATTTTTTTTAATAAGAT
24287089 AGCTTGTATGCAAGCATGAACGATGATTTTATCTGAGTGATTGTATGTTATCATGAAAAATGGAA
66 AGCTTGTATGCAAGCATGAACGATGATTTTATCTGAGTGATTGTATGTTATCATGAAAAATGGAA
24287154 TGTTTTTATGATCTTAGTCTTAGGTAATGTTTGCCATGAAAACTTAGTTTCTCTTGAGATTAGAC
131 TGTTTTTATGATCTTAGTCTTAGGTAATGTTTGCCATGAAAACTTAGTTTCTCTTGAGATTAGAC
24287219 ATGCATGAAGGTTTATATCTTTAGAATTGACTTAGTAACTTTCTTGAGGCGAAATCCTAGGGGAC
196 ATGCATGAAGGTTTATATCTTTAGAATTGACTTAGTAACTTTCTTGAGGCGAAATCCTAGGGGAC
24287284 ATAAAAATCTAAAATGATATAG
261 ATAAAAATCTAAAATGATATAG
24287306 CAAATCATTCTTTCATAAGTATGTCTTAATAAATGAATGTTTGGAGAAATTTTTTTTAATAAGAT
1 CAAATCATTCTTTCATAAGTATGTCTTAATAAATGAATGTTTGGAGAAATTTTTTTTAATAAGAT
24287371 AGCTTGTATGCAAGCATGAACGATGATTTTATCTGAGTGATTGTATGTTATCATGAAAAATGGAA
66 AGCTTGTATGCAAGCATGAACGATGATTTTATCTGAGTGATTGTATGTTATCATGAAAAATGGAA
* * *
24287436 TGTTTTTATGATCTTAGTCTTAGTTATTGTTTTCCATGAAAACTTAGTTTCTCTTGAGATTAGAC
131 TGTTTTTATGATCTTAGTCTTAGGTAATGTTTGCCATGAAAACTTAGTTTCTCTTGAGATTAGAC
24287501 ATGCATGAAGGTTTATATCTTTAGAATTGACTTAGTAACTTTCTTGAGGCGAAATCCTAGGGGAC
196 ATGCATGAAGGTTTATATCTTTAGAATTGACTTAGTAACTTTCTTGAGGCGAAATCCTAGGGGAC
24287566 ATAAAAATCTAAAATGATATAG
261 ATAAAAATCTAAAATGATATAG
24287588 GCACCATTTT
Statistics
Matches: 279, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
282 279 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (282 bp):
CAAATCATTCTTTCATAAGTATGTCTTAATAAATGAATGTTTGGAGAAATTTTTTTTAATAAGAT
AGCTTGTATGCAAGCATGAACGATGATTTTATCTGAGTGATTGTATGTTATCATGAAAAATGGAA
TGTTTTTATGATCTTAGTCTTAGGTAATGTTTGCCATGAAAACTTAGTTTCTCTTGAGATTAGAC
ATGCATGAAGGTTTATATCTTTAGAATTGACTTAGTAACTTTCTTGAGGCGAAATCCTAGGGGAC
ATAAAAATCTAAAATGATATAG
Found at i:24289188 original size:15 final size:15
Alignment explanation
Indices: 24289170--24289209 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
24289160 TTCTCACTTT
24289170 TTCAATCATCCCTCA
1 TTCAATCATCCCTCA
*
24289185 TTCAATCATCTCTCA
1 TTCAATCATCCCTCA
* *
24289200 CTCATTCATC
1 TTCAATCATC
24289210 ATTCTCTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (15 bp):
TTCAATCATCCCTCA
Found at i:24289203 original size:19 final size:19
Alignment explanation
Indices: 24289181--24289218 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
24289171 TCAATCATCC
24289181 CTCATTCAATCA-TCTCTCA
1 CTCATTC-ATCATTCTCTCA
24289200 CTCATTCATCATTCTCTCA
1 CTCATTCATCATTCTCTCA
24289219 ACTCTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.24, C:0.37, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATTCATCATTCTCTCA
Found at i:24290447 original size:35 final size:35
Alignment explanation
Indices: 24290401--24290586 Score: 284
Period size: 35 Copynumber: 5.3 Consensus size: 35
24290391 GATAATCCAA
* *
24290401 CTCATAAGAGCTAATCCATCCGGAACACATCAATG
1 CTCATAAGAGCTAATCCATCCGAAACACACCAATG
24290436 CTCATAAGAGCTAATCCATCCGAAACACACCAATG
1 CTCATAAGAGCTAATCCATCCGAAACACACCAATG
24290471 CTCATAAGAGCTAATCCATCCGAAACACACCAATG
1 CTCATAAGAGCTAATCCATCCGAAACACACCAATG
*
24290506 CTCATAAGAGCTAATCCATCCGAAACACACCAACG
1 CTCATAAGAGCTAATCCATCCGAAACACACCAATG
* * * * *
24290541 CTTATAAAAG-TTATCCATCCGAAACAGATCAATG
1 CTCATAAGAGCTAATCCATCCGAAACACACCAATG
*
24290575 CTCATCAGAGCT
1 CTCATAAGAGCT
24290587 TAACATGAGA
Statistics
Matches: 138, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
34 27 0.20
35 111 0.80
ACGTcount: A:0.39, C:0.30, G:0.12, T:0.19
Consensus pattern (35 bp):
CTCATAAGAGCTAATCCATCCGAAACACACCAATG
Found at i:24303713 original size:27 final size:27
Alignment explanation
Indices: 24303686--24303959 Score: 248
Period size: 27 Copynumber: 10.0 Consensus size: 27
24303676 TATCCCCTTT
* *
24303686 ATAGATCACCACGAAGGCTTCCTTTTT
1 ATAGATCACCACAAAGGCTTCCTTTTC
*
24303713 ATAGATCACCACAAAGGCTTCCTTTTT
1 ATAGATCACCACAAAGGCTTCCTTTTC
* * * * *
24303740 AGAGATCGCCACAAATGTTTCCTATTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
* *
24303767 ATAGATCGCTACAAAGGCTTCCTTTTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
* *
24303794 ATAGATAGCCACACCACAAAGGCTTTCTTTTT
1 ATAGAT-----CACCACAAAGGCTTCCTTTTC
* * *
24303826 ATAGATCGCCACAAATGCTTTCTTTTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
* *
24303853 ATTGAT-AGCTACAAAGGCTTCCTTTTC
1 ATAGATCA-CCACAAAGGCTTCCTTTTC
*
24303880 ATAGATCGCCACAAAGGCTTCCTTTTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
* * *
24303907 ATTGAT-AGCCACAAATGATTCC-TTTC
1 ATAGATCA-CCACAAAGGCTTCCTTTTC
* *
24303933 AATAGATCACCATAAAGGCTTTCTTTT
1 -ATAGATCACCACAAAGGCTTCCTTTT
24303960 ATGATGTATT
Statistics
Matches: 200, Mismatches: 36, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.02
27 169 0.85
28 4 0.02
32 23 0.12
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (27 bp):
ATAGATCACCACAAAGGCTTCCTTTTC
Done.