Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39383930
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 780790 characters in sequence are not A, C, G, or T
File 86 of 126
Found at i:26184669 original size:14 final size:15
Alignment explanation
Indices: 26184617--26184677 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 15
26184607 TGAAACATTA
*
26184617 AATTTTTTTATTTAAG
1 AATTTTTTTATTT-TG
* * *
26184633 TAATTTATTTACTGTTC
1 -AATTTTTTTA-TTTTG
26184650 AATTTTTTT-TTTTG
1 AATTTTTTTATTTTG
26184664 AATTTTTTTATTTT
1 AATTTTTTTATTTT
26184678 TTAACAGATT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
14 12 0.34
15 4 0.11
16 8 0.23
17 9 0.26
18 2 0.06
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (15 bp):
AATTTTTTTATTTTG
Found at i:26186875 original size:3 final size:3
Alignment explanation
Indices: 26186867--26186915 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
26186857 ATAAAGAAGG
26186867 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26186915 A
1 A
26186916 GGATTAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26188530 original size:29 final size:29
Alignment explanation
Indices: 26188497--26188559 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
26188487 ATAAAGTCGC
*
26188497 AGTGTCTAAACCGACAGTATATATTGGGG
1 AGTGTCTAAACCGACAGTATATATTGGAG
26188526 AGTGTCTAAACCGACAGTATATATTGGAG
1 AGTGTCTAAACCGACAGTATATATTGGAG
26188555 AGTGT
1 AGTGT
26188560 TGGAAGGCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.29
Consensus pattern (29 bp):
AGTGTCTAAACCGACAGTATATATTGGAG
Found at i:26189074 original size:32 final size:32
Alignment explanation
Indices: 26189038--26189101 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
26189028 CGAGTATTTC
26189038 CCTACTGCAAGCTGTTTGTGCAGGTGGATGGG
1 CCTACTGCAAGCTGTTTGTGCAGGTGGATGGG
26189070 CCTACTGCAAGCTGTTTGTGCAGGTGGATGGG
1 CCTACTGCAAGCTGTTTGTGCAGGTGGATGGG
26189102 ACTTGGCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.16, C:0.19, G:0.38, T:0.28
Consensus pattern (32 bp):
CCTACTGCAAGCTGTTTGTGCAGGTGGATGGG
Found at i:26190576 original size:8 final size:8
Alignment explanation
Indices: 26190548--26190589 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
26190538 GAGCTTATGC
*
26190548 TGTAAAGT
1 TGTAATGT
*
26190556 TGTTATG-
1 TGTAATGT
*
26190563 TGTAATAT
1 TGTAATGT
26190571 TGTAATGT
1 TGTAATGT
26190579 TGTAATGT
1 TGTAATGT
26190587 TGT
1 TGT
26190590 TGTAACACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
7 5 0.18
8 23 0.82
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (8 bp):
TGTAATGT
Found at i:26193165 original size:158 final size:158
Alignment explanation
Indices: 26192886--26198618 Score: 10380
Period size: 158 Copynumber: 36.3 Consensus size: 158
26192876 TCAAAACAAA
* * * * *
26192886 TTTAGTAAAAAAC-CTTTATTTTAGCCTTTTGTTCGTA---TTTTTTTCTGA-ATTTCATTACTT
1 TTTAGTAAAAAACTC-TTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTT
* *
26192946 TCAAAAAA-ATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTGAAATG
65 TCAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATG
* * *
26193010 TATTAATTTAGTGTATTTT-TTATATAAA
130 TATTAATTTAGTATGTTTTGTTATATAAG
* *
26193038 TTTAGTAAAAAACCCTTATTTTGGCCATTTGTTCGGAT-TTTTCTTATTTTCAGATTTTATTACT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTT-TT-TTTTCAGATTTTATTACT
* * * * *
26193102 TACAAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTTTGGTACATAATGTTTGAAAT
64 TTCAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAAT
* * *
26193167 GTATTAATTTAGTGTGTTTTTTTTATATAAA
129 GTATTAATTTAGTATG-TTTTGTTATATAAG
* * * *
26193198 TTTAGTAAGAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTCTTTTTGTC-GAATTTTATTA
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTT-T-TTTTT-TCAG-ATTTTATTA
* * * *
26193262 CTTTCAAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATTACGTTTCAA
62 CTTTCAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAA
* * * *
26193327 ATATATTAATTTAGTGTATTTT-TTATATAAA
127 ATGTATTAATTTAGTATGTTTTGTTATATAAG
* * * * *
26193358 TTTAGTAAAAAACCCTTATTTTGTCCCTTTGTTCGTAT-TTTTCTTTTTCCCGAATTTTATTACT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTT-TTTTTTCAG-ATTTTATTACT
* *
26193422 TTCAAATAATATACTATTTTTCGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTCAAA
64 TTCAAAAAATATACTATTTTT-GTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAA
* * * *
26193487 TGTAGTAATTTAGTGTGTTTTTTTATATAAA
128 TGTATTAATTTAGTATGTTTTGTTATATAAG
* * *
26193518 TTTAGTAAAAAACCCTTATTTTGGCCCTTTGTCCGTATTTTTCTTTTTTTTTTTCAGATTTTATT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTA----TC-TTTTTTTTTTCAGATTTTATT
* * *
26193583 ACTTTC-AAAAA-ATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTAA
61 ACTTTCAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGA
* * *
26193646 AATTTATTAATTTAGTGTGTTTT-TTATATAAA
126 AATGTATTAATTTAGTATGTTTTGTTATATAAG
* * * **
26193678 TTTAGT-AAAAACCCTTATTTTGGCCATTTGTTCCTATTTTTCTTTTTTTTTGGATTTTATTACT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTA-TCTT-TTTTTTTTCAGATTTTATTACT
* *
26193742 TTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTGAAAT
64 TTCAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAAT
* * *
26193807 GTATTAATTTAGTGTGTTTTTTTATATAAA
129 GTATTAATTTAGTATGTTTTGTTATATAAG
* * * * *
26193837 TTTAGTAAAAAACCCTTATTTTGGTCATTTGTTC--A--TATTTTTTTT-GGATTTTACTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
*
26193897 CAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
* * *
26193962 ATTAATTTAGTGTGTTTTTTTATATAAA
131 ATTAATTTAGTATGTTTTGTTATATAAG
26193990 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26194055 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26194120 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26194148 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26194213 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26194278 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26194306 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26194371 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26194436 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26194464 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26194529 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26194594 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26194622 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26194687 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26194752 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26194780 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26194845 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26194910 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26194938 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26195003 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26195068 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26195096 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26195161 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26195226 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26195254 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26195319 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26195384 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26195412 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26195477 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26195542 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26195570 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26195635 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26195700 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26195728 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26195793 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26195858 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26195886 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26195951 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26196016 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26196044 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26196109 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26196174 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26196202 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26196267 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26196332 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26196360 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26196425 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26196490 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26196518 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26196583 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26196648 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26196676 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26196741 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26196806 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26196834 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26196899 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26196964 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26196992 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26197057 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26197122 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26197150 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26197215 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26197280 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26197308 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26197373 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26197438 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26197466 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26197531 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26197596 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26197624 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26197689 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26197754 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26197782 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26197847 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26197912 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26197940 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26198005 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26198070 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26198098 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26198163 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
26198228 ATTAATTTAGTATGTTTTGTTATATAAG
131 ATTAATTTAGTATGTTTTGTTATATAAG
26198256 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
26198321 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
66 CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
* *
26198386 ATTAATTTAG--TGTTTTTTTATATAAA
131 ATTAATTTAGTATGTTTTGTTATATAAG
*
26198412 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTCTTTTTTTCGGATTTTATTACTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTT-TTTTTTTCAGATTTTATTACTT
* * *
26198477 TCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTAAAATT
65 TCAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATG
* *
26198542 TATTAATTTAGTGTGTTTT-TTATATAAA
130 TATTAATTTAGTATGTTTTGTTATATAAG
* * *
26198570 TTTAGT-AAAAACCCTTATTTTGGCCATTTGTTCCTATTTTTCTTTTTTT
1 TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTT-TTTTTTT
26198619 TTGGATTATT
Statistics
Matches: 5476, Mismatches: 70, Indels: 65
0.98 0.01 0.01
Matches are distributed among these distances:
152 32 0.01
153 139 0.03
154 11 0.00
155 6 0.00
156 85 0.02
157 167 0.03
158 4545 0.83
159 115 0.02
160 174 0.03
161 71 0.01
162 101 0.02
163 4 0.00
164 15 0.00
165 7 0.00
166 4 0.00
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.55
Consensus pattern (158 bp):
TTTAGTAAAAAACTCTTATTTTGGCCATTTGTTCGTATCTTTTTTTTTTCAGATTTTATTACTTT
CAAAAAATATACTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGT
ATTAATTTAGTATGTTTTGTTATATAAG
Found at i:26198627 original size:96 final size:96
Alignment explanation
Indices: 26198533--26198706 Score: 289
Period size: 96 Copynumber: 1.8 Consensus size: 96
26198523 GTACATTATG
**
26198533 TTTAAAATTTATTAATTTAGTGTG-TTTTTTATATAAATTTAGT-AAAAACCCTTATTTTGGCCA
1 TTTAAAATGAATTAATTTAGTGTGTTTTTTTATATAAATTTAGTAAAAAACCCTTATTTTGGCCA
26198596 TTTGTTCCTATTTTTCTTTTTTTTTGGATTA
66 TTTGTTCCTATTTTTCTTTTTTTTTGGATTA
* *
26198627 TTTGAAATGAATTAATTTAGTGTGTTTTTTTATATAAATTTAGTAAAAAACCCTTATTTTGGCCC
1 TTTAAAATGAATTAATTTAGTGTGTTTTTTTATATAAATTTAGTAAAAAACCCTTATTTTGGCCA
*
26198692 TTTGTTCGTATTTTT
66 TTTGTTCCTATTTTT
26198707 TTTCCGGATT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
94 21 0.29
95 19 0.26
96 33 0.45
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (96 bp):
TTTAAAATGAATTAATTTAGTGTGTTTTTTTATATAAATTTAGTAAAAAACCCTTATTTTGGCCA
TTTGTTCCTATTTTTCTTTTTTTTTGGATTA
Found at i:26198977 original size:19 final size:20
Alignment explanation
Indices: 26198953--26198991 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26198943 TTTTTTACAC
26198953 AAATAATA-CAAAAAAATTA
1 AAATAATACCAAAAAAATTA
26198972 AAATAATACCAAAAAAATTA
1 AAATAATACCAAAAAAATTA
26198992 TCTTTCTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
AAATAATACCAAAAAAATTA
Found at i:26199006 original size:14 final size:14
Alignment explanation
Indices: 26198989--26199018 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26198979 ACCAAAAAAA
26198989 TTATCTTTCTTTCT
1 TTATCTTTCTTTCT
*
26199003 TTATTTTTCTTTCT
1 TTATCTTTCTTTCT
26199017 TT
1 TT
26199019 TTCCTTCCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.77
Consensus pattern (14 bp):
TTATCTTTCTTTCT
Found at i:26199087 original size:6 final size:6
Alignment explanation
Indices: 26199078--26199137 Score: 52
Period size: 6 Copynumber: 9.7 Consensus size: 6
26199068 CACCTTCTCC
* *
26199078 TTCTTT TTCTTTT TTCTTT TTC--T TTCTTT TTCTTTT TTCTGCT TTCCTT
1 TTCTTT TTC-TTT TTCTTT TTCTTT TTCTTT TTC-TTT TTCT-TT TTCTTT
26199127 TTCTTT CTTCT
1 TTCTTT -TTCT
26199138 CCTTCAGCTG
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
4 4 0.09
6 20 0.45
7 20 0.45
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.77
Consensus pattern (6 bp):
TTCTTT
Found at i:26199096 original size:13 final size:13
Alignment explanation
Indices: 26199078--26199117 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
26199068 CACCTTCTCC
26199078 TTCTTTTTCTTTT
1 TTCTTTTTCTTTT
26199091 TTCTTTTTC---T
1 TTCTTTTTCTTTT
26199101 TTCTTTTTCTTTT
1 TTCTTTTTCTTTT
26199114 TTCT
1 TTCT
26199118 GCTTTCCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
10 10 0.42
13 14 0.58
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (13 bp):
TTCTTTTTCTTTT
Found at i:26199099 original size:38 final size:38
Alignment explanation
Indices: 26198999--26199099 Score: 98
Period size: 41 Copynumber: 2.6 Consensus size: 38
26198989 TTATCTTTCT
* * *
26198999 TTCTTTATT-TTTCTTTCTTTTTCCTTCCCTCCCTCTTC
1 TTCTTT-TTCTTTCTTTCTTTTTCCTACCCACCCTCTCC
* * *
26199037 TTCTTCTCCTTCTCTTTCTCTTTTCCTACGCCACCTTCTCC
1 TTCTTTTTCTT-TCTTTCT-TTTTCCTAC-CCACCCTCTCC
26199078 TTCTTTTTCTTT-TTTCTTTTTC
1 TTCTTTTTCTTTCTTTCTTTTTC
26199100 TTTCTTTTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
37 1 0.02
38 12 0.24
39 12 0.24
40 9 0.18
41 17 0.33
ACGTcount: A:0.03, C:0.35, G:0.01, T:0.61
Consensus pattern (38 bp):
TTCTTTTTCTTTCTTTCTTTTTCCTACCCACCCTCTCC
Found at i:26199117 original size:17 final size:17
Alignment explanation
Indices: 26199083--26199114 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26199073 TCTCCTTCTT
26199083 TTTCTTTTTTCTTTTTC
1 TTTCTTTTTTCTTTTTC
26199100 TTTC-TTTTTCTTTTT
1 TTTCTTTTTTCTTTTT
26199115 TCTGCTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTCTTTTTTCTTTTTC
Found at i:26199128 original size:20 final size:20
Alignment explanation
Indices: 26199099--26199137 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26199089 TTTTCTTTTT
* *
26199099 CTTTCTTTTTCTTTTTTCTG
1 CTTTCCTTTTCTTTCTTCTG
26199119 CTTTCCTTTTCTTTCTTCT
1 CTTTCCTTTTCTTTCTTCT
26199138 CCTTCAGCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.72
Consensus pattern (20 bp):
CTTTCCTTTTCTTTCTTCTG
Found at i:26209107 original size:84 final size:83
Alignment explanation
Indices: 26209001--26209246 Score: 343
Period size: 85 Copynumber: 2.9 Consensus size: 83
26208991 TTACATCTTT
* * *
26209001 ATTTGGAAACAAAACAATATCAAATAAAATCTTGTTAAACGACGGGAATAAATCCCGAAACATAT
1 ATTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGACGGGAATAAATCCCGAAACAGAT
26209066 TTTATTTAATTTAGTT-TGA
66 TTTATTTAATTTA-TTCT-A
* * * ** *
26209085 ATTTAGAAACAAAATAAAATCAAATAAAATATTGTTAAACGGCGGAGGTTAAATCCCAAAACAGA
1 ATTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGACGG-GAATAAATCCCGAAACAGA
26209150 TTTTATTTAATTATATTCTA
65 TTTTATTTAATT-TATTCTA
* *
26209170 ATTTGGAAACAAAATAAAATCAAATAAAATCCTGTTAAACAAC-GGAATAAATCCCGAAACAGAT
1 ATTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGACGGGAATAAATCCCGAAACAGAT
26209234 TTTATTTAATTTA
66 TTTATTTAATTTA
26209247 ATTTCTCGTT
Statistics
Matches: 142, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
82 2 0.01
83 28 0.20
84 41 0.29
85 68 0.48
86 3 0.02
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.31
Consensus pattern (83 bp):
ATTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGACGGGAATAAATCCCGAAACAGAT
TTTATTTAATTTATTCTA
Found at i:26209539 original size:77 final size:78
Alignment explanation
Indices: 26209243--26209565 Score: 400
Period size: 77 Copynumber: 4.1 Consensus size: 78
26209233 TTTTATTTAA
* * * * *
26209243 TTTAATTT-CTCGTTTTTGGAAATAAACCAAATTTGGAATGAAATCATT-AAGCGGTAGGAATCA
1 TTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCATTGAA-CGGCAAGAATCA
*
26209306 ATTCCGAAACGATT
65 ATCCCGAAACGATT
* * * * * *
26209320 TTTATTTAACTCATTTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGACGAGAAAC
1 TTTATTTTACTC--GTTTTTGGAAATAAAACAAATTTGGAATAAAATCATTGAACGGCAAGAATC
26209385 AATCCCGAAACGATT
64 AATCCCGAAACGATT
* * ** *
26209400 TTTATATTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCAATGAACGGCGGGAATCGA
1 TTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCATTGAACGGCAAGAATCAA
*
26209465 TCCTGAAACGA-T
66 TCCCGAAACGATT
* * *
26209477 TTTATTTTACTCGTTTTTGGAAATAAAACAATTTTGGAATAAAATCGTTGAATGGCAAGAATCAA
1 TTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCATTGAACGGCAAGAATCAA
*
26209542 TCCCGAAATGATT
66 TCCCGAAACGATT
26209555 TTTATTTTACT
1 TTTATTTTACT
26209566 TTTAATTTCT
Statistics
Matches: 209, Mismatches: 32, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
77 73 0.35
78 71 0.34
80 63 0.30
81 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (78 bp):
TTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCATTGAACGGCAAGAATCAA
TCCCGAAACGATT
Found at i:26209555 original size:155 final size:157
Alignment explanation
Indices: 26209243--26209565 Score: 440
Period size: 155 Copynumber: 2.1 Consensus size: 157
26209233 TTTTATTTAA
* * * * *
26209243 TTTA-ATTTCTCGTTTTTGGAAATAAACCAAATTTGGAATGAAATCATTAAGCGGTAGGAATCAA
1 TTTATATTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCATGAAGCGGCAGGAATCAA
*
26209307 TTCCGAAACGATTTTTATTTAACTCATTTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTG
66 TTCCGAAACGATTTTTATTTAACTCA-GTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTG
*
26209372 AACGACGAGAAACAATCCCGAAACGATT
130 AACGACAAGAAACAATCCCGAAACGATT
* *
26209400 TTTATATTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCAATGAA-CGGCGGGAATCG
1 TTTATATTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATC-ATGAAGCGGCAGGAATCA
* *
26209464 A-TCCTGAAACGA-TTTTATTTTACTC-GTTTTTGGAAATAAAACAATTTTGGAATAAAATCGTT
65 ATTCC-GAAACGATTTTTATTTAACTCAGTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTT
* * * *
26209526 GAATGGCAAGAATCAATCCCGAAATGATT
129 GAACGACAAGAAACAATCCCGAAACGATT
*
26209555 TTTATTTTACT
1 TTTATATTACT
26209566 TTTAATTTCT
Statistics
Matches: 147, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
155 69 0.47
157 19 0.13
158 55 0.37
159 4 0.03
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (157 bp):
TTTATATTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCATGAAGCGGCAGGAATCAA
TTCCGAAACGATTTTTATTTAACTCAGTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGA
ACGACAAGAAACAATCCCGAAACGATT
Found at i:26209649 original size:91 final size:89
Alignment explanation
Indices: 26209476--26209649 Score: 201
Period size: 91 Copynumber: 1.9 Consensus size: 89
26209466 CCTGAAACGA
* ** *
26209476 TTTTATTTTACTCGTTTTTGGAAATAAAACAATTTTGGAATAAAATCGTTGAATGGCAAGAATCA
1 TTTTAATTTACTCGTTTTTGGAAATAAAACAATTACGGAATAAAATCGTTGAACGGCAAGAATCA
* *
26209541 ATCCCGAAATGATTTTTATTTTAC
66 ATCCCGAAACGAATTTTATTTTAC
* **
26209565 TTTTAATTT-CTC-TTTTTGGAAATAAAATCAAATTAACGGAATAAAATTTGTTGAACGGCGGGA
1 TTTTAATTTACTCGTTTTTGGAAATAAAA-C-AATT-ACGGAATAAAA-TCGTTGAACGGCAAGA
26209628 ATCAATCCC-ACAACGAATTTTA
62 ATCAATCCCGA-AACGAATTTTA
26209650 CCTATTGTTA
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
87 15 0.21
88 4 0.06
89 12 0.17
90 10 0.14
91 30 0.42
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (89 bp):
TTTTAATTTACTCGTTTTTGGAAATAAAACAATTACGGAATAAAATCGTTGAACGGCAAGAATCA
ATCCCGAAACGAATTTTATTTTAC
Found at i:26213810 original size:42 final size:43
Alignment explanation
Indices: 26213746--26213847 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 43
26213736 CGATTTGAGA
* * *
26213746 ATTACATGTAAGACCATGTCTGGAACATTGGCGTC-GTATATG
1 ATTACATGTAAGACCATATCTGGAACAGTGGCATCAGTATATG
* * * * *
26213788 ATTACATGTAAGACCCTATCTGGGACAGTGGCATCATTGTTTG
1 ATTACATGTAAGACCATATCTGGAACAGTGGCATCAGTATATG
26213831 ATTACATGTAAGACCAT
1 ATTACATGTAAGACCAT
26213848 GCCTAGGACG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 30 0.60
43 20 0.40
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (43 bp):
ATTACATGTAAGACCATATCTGGAACAGTGGCATCAGTATATG
Found at i:26213863 original size:43 final size:42
Alignment explanation
Indices: 26213706--26213864 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
26213696 AACATGACAT
* *
26213706 CATGTAAGACCACGTCTGGGACGTTGGCCTCGATTTGA-GAATTA
1 CATGTAAGACCATGTCTGGGACGTTGGCATC-ATTT-ATG-ATTA
* * * * *
26213750 CATGTAAGACCATGTCTGGAACATTGGCGTCGTATATGATTA
1 CATGTAAGACCATGTCTGGGACGTTGGCATCATTTATGATTA
* * *
26213792 CATGTAAGACCCTATCTGGGACAG-TGGCATCATTGTTTGATTA
1 CATGTAAGACCATGTCTGGGAC-GTTGGCATCATT-TATGATTA
* *
26213835 CATGTAAGACCATGCCTAGGACGTTGGCAT
1 CATGTAAGACCATGTCTGGGACGTTGGCAT
26213865 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 32 0.34
43 34 0.37
44 27 0.29
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
CATGTAAGACCATGTCTGGGACGTTGGCATCATTTATGATTA
Found at i:26217915 original size:20 final size:22
Alignment explanation
Indices: 26217865--26217915 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 22
26217855 AATTAATAAT
* *
26217865 ATATCATAAATTGTGTATAAATG
1 ATAT-ATAAATTGTGCATAAATA
26217888 ATAT-TAAATT-TGCATAAA-A
1 ATATATAAATTGTGCATAAATA
26217907 ATATATAAA
1 ATATATAAA
26217916 ACAATACGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 4 0.16
20 11 0.44
21 6 0.24
23 4 0.16
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (22 bp):
ATATATAAATTGTGCATAAATA
Found at i:26217936 original size:41 final size:41
Alignment explanation
Indices: 26217891--26217974 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
26217881 ATAAATGATA
* *
26217891 TTAAATTTGCATAAAAATATATAAAACAATACGTAATAAAT
1 TTAAATTTACATAAAAATATATAAAACAATACATAATAAAT
26217932 TTAAATTTACATAAAAATATATAAAACAATACATAATAAAT
1 TTAAATTTACATAAAAATATATAAAACAATACATAATAAAT
26217973 TT
1 TT
26217975 GAAGAATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (41 bp):
TTAAATTTACATAAAAATATATAAAACAATACATAATAAAT
Found at i:26218041 original size:24 final size:22
Alignment explanation
Indices: 26217967--26218045 Score: 81
Period size: 22 Copynumber: 3.5 Consensus size: 22
26217957 ACAATACATA
*
26217967 ATAAATTTGAAGAATAA-TACATG
1 ATAAATTT-AA-AATAATTATATG
*
26217990 A-AAACTTAAAATAATTATATG
1 ATAAATTTAAAATAATTATATG
*
26218011 ATAAATTTAAAATAATAATATGTG
1 ATAAATTTAAAATAAT--TATATG
26218035 ATAAATTTAAA
1 ATAAATTTAAA
26218046 CAACATTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
20 5 0.10
21 8 0.17
22 18 0.38
23 1 0.02
24 16 0.33
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.34
Consensus pattern (22 bp):
ATAAATTTAAAATAATTATATG
Found at i:26222970 original size:45 final size:44
Alignment explanation
Indices: 26222920--26223050 Score: 129
Period size: 44 Copynumber: 2.9 Consensus size: 44
26222910 GGAATTTGTC
* **
26222920 GCTTCAATCTACTCCACTGCAACATCAAGGAAATAAGATTTTCTG
1 GCTTCAATCTACTCCACTGCAACTTC-AGGAAATAAGATTTGATG
* * * * * **
26222965 TCTTCAGTCTGCTCCATTGCAACTTCAGAGAGATAAG-GCTGATG
1 GCTTCAATCTACTCCACTGCAACTTCAG-GAAATAAGATTTGATG
*
26223009 GCTTCAATCTACTCTACTGCAACTTCAGGAAAGTAAGATTTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGAAA-TAAGATTTG
26223051 CTATCTTTAG
Statistics
Matches: 65, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
43 3 0.05
44 32 0.49
45 30 0.46
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
GCTTCAATCTACTCCACTGCAACTTCAGGAAATAAGATTTGATG
Found at i:26223075 original size:89 final size:89
Alignment explanation
Indices: 26222920--26223090 Score: 236
Period size: 89 Copynumber: 1.9 Consensus size: 89
26222910 GGAATTTGTC
* * *
26222920 GCTTCAATCTACTCCACTGCAACATCAAGGAAATAAGATTTTCTGTCTTCAGTCTGCTCCATTGC
1 GCTTCAATCTACTCCACTGCAACATCAAGGAAATAAGATTTGCTATCTTCAGTCTGCTCCAGTGC
26222985 AACTTCAGAGAGATAAGGCTGATG
66 AACTTCAGAGAGATAAGGCTGATG
* * * * *
26223009 GCTTCAATCTACTCTACTGCAACTTC-AGGAAAGTAAGATTTGCTATCTTTAGTCTGGTTCAGTG
1 GCTTCAATCTACTCCACTGCAACATCAAGGAAA-TAAGATTTGCTATCTTCAGTCTGCTCCAGTG
* *
26223073 CAACTTTAGGGAGATAAG
65 CAACTTCAGAGAGATAAG
26223091 ACTTGTCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 6 0.08
89 65 0.92
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (89 bp):
GCTTCAATCTACTCCACTGCAACATCAAGGAAATAAGATTTGCTATCTTCAGTCTGCTCCAGTGC
AACTTCAGAGAGATAAGGCTGATG
Found at i:26223186 original size:44 final size:44
Alignment explanation
Indices: 26223120--26223232 Score: 120
Period size: 44 Copynumber: 2.6 Consensus size: 44
26223110 GATCTGACCT
** * *
26223120 ACTGCAACTTCAGAGG-TCTAGGATTCATCGTTTTAATCCGCTCC
1 ACTGCAACTTCAG-GGAAATAGGATTCATCGCTTCAATCCGCTCC
** * *
26223164 ACTGCAACTTCAGGGAAATAGGATTGGTGGCTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAAATAGGATTCATCGCTTCAATCCGCTCC
* *
26223208 ACTGCAACTTCAGGGAGATAAGATT
1 ACTGCAACTTCAGGGAAATAGGATT
26223233 TGCCATGATC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 2 0.03
44 56 0.97
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAAATAGGATTCATCGCTTCAATCCGCTCC
Found at i:26223302 original size:180 final size:180
Alignment explanation
Indices: 26222975--26223455 Score: 657
Period size: 181 Copynumber: 2.6 Consensus size: 180
26222965 TCTTCAGTCT
* * * * * *
26222975 GCTCCATTGCAACTTCAGAGAGATAAGG-CTGATGGCTTCAATCTACTCTACTGCAACTTCA-GG
1 GCTCCACTGCAACTTCAGGGAGAT-AGGATTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
26223038 AAAGTAAGATTTGCTATCTTTAGTCTGGTTC-AGTGCAACTTTAGGGAGATAAGA-CTTGTCTTT
65 AGA-TAAGATTTGC---CATGA-TCT-GTTCTACTGCAACTTTAGAGAGATAAGATC-TGTCTTT
*
26223101 GGTGAATTTGATCTGACCTACTGCAACTTCAGAGGTCTAGGATTCATCGTTTTAATCC
123 GGTGAATTTGATCTGACCTACTGCAACTTCAGAGGTATAGGATTCATCGTTTTAATCC
*
26223159 GCTCCACTGCAACTTCAGGGAAATAGGATTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGA
26223224 GATAAGATTTGCCATGATCTGTTCTACTGCAACTTTAGAGAGATAAGATCTGTCTTTGGTGAATT
66 GATAAGATTTGCCATGATCTGTTCTACTGCAACTTTAGAGAGATAAGATCTGTCTTTGGTGAATT
*
26223289 TGAT-TCGACCTACTGCAACTTCAGAGGTATATGATTCATCGTTTTAATCC
131 TGATCT-GACCTACTGCAACTTCAGAGGTATAGGATTCATCGTTTTAATCC
* *
26223339 GCTCCACTTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGAG
1 GCTCCAC-TGCAACTTCAGGGAGATAGGATTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * * *
26223404 AGATCAGATTTGCCATGATCTGCTCTACTGTAACTTAAGAGAGATAAGATCT
65 AGATAAGATTTGCCATGATCTGTTCTACTGCAACTTTAGAGAGATAAGATCT
26223456 ATGATTTATA
Statistics
Matches: 270, Mismatches: 21, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
179 5 0.02
180 92 0.34
181 106 0.39
183 3 0.01
184 60 0.22
185 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (180 bp):
GCTCCACTGCAACTTCAGGGAGATAGGATTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGA
GATAAGATTTGCCATGATCTGTTCTACTGCAACTTTAGAGAGATAAGATCTGTCTTTGGTGAATT
TGATCTGACCTACTGCAACTTCAGAGGTATAGGATTCATCGTTTTAATCC
Found at i:26223407 original size:44 final size:43
Alignment explanation
Indices: 26223300--26223407 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 43
26223290 GATTCGACCT
* * * *
26223300 ACTGCAACTTCAGAG-GTATATGATTCATCGTTTTAATCCGCTCC
1 ACTGCAACTTCAGAGAG-ATAGGATT-ATCGCTTCAATCTGCTCC
* *
26223344 ACTTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAATCTGCTCC
1 AC-TGCAACTTCAGAGAGATAGGATTA-TCGCTTCAATCTGCTCC
26223389 ACTGCAACTTCAGAGAGAT
1 ACTGCAACTTCAGAGAGAT
26223408 CAGATTTGCC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
44 19 0.35
45 34 0.63
46 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
ACTGCAACTTCAGAGAGATAGGATTATCGCTTCAATCTGCTCC
Found at i:26223536 original size:181 final size:178
Alignment explanation
Indices: 26222982--26223639 Score: 467
Period size: 181 Copynumber: 3.6 Consensus size: 178
26222972 TCTGCTCCAT
* * * * *
26222982 TGCAACTTCAGAGAGATAAGG-CTGATGGCTTCAATCTACTCTACTGCAACTTCA-GGAAAGTAA
1 TGCAACTTCAGGGAGAT-AGGATTG-TGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGA-TAA
* * * * * * * * *
26223045 GATTTGCTATCTTTAGTCTGGT-TCAGTGCAACTTTAGGGAGATAAGA-CTTGTCTTTGGTGAAT
63 GATTTGC---CATGA-TCTGCTCT-ACTGCAACTTAAGAGAGATAAGATC-TATATTTGATGAAT
* ** ** * * *
26223108 TTGA-TCTGACCTACTGCAACTTCAGAGGTCTAGGATTCATCGTTTTAATCCGCTCCAC
122 TTAATTC-GACCTACTGCAACTTCAGAGGAATAACATTCATCG-CTCAATCCGCCCCAC
*
26223166 TGCAACTTCAGGGAAATAGGATTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGAGATAGGATT-GTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* * * * * *
26223231 TTTGCCATGATCTGTTCTACTGCAACTTTAGAGAGATAAGATCTGTCTTTGGTGAATTTGATTCG
65 TTTGCCATGATCTGCTCTACTGCAACTTAAGAGAGATAAGATCTATATTTGATGAATTTAATTCG
* ** * * *
26223296 ACCTACTGCAACTTCAGAGGTATATGATTCATCGTTTTAATCCGCTCCAC
130 ACCTACTGCAACTTCAGAGGAATAACATTCATCG-CTCAATCCGCCCCAC
* *
26223346 TTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGAGAGATCAG
1 -TGCAACTTCAGGGAGATAGGATT-GTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* *
26223411 ATTTGCCATGATCTGCTCTACTGTAACTTAAGAGAGATAAGATCTATGATTT-AT-AGCTTTAA-
64 ATTTGCCATGATCTGCTCTACTGCAACTTAAGAGAGATAAGATCTAT-ATTTGATGA-ATTTAAT
* ** * *
26223473 TCTGTTCC-ACTGCGGCTTCAG-GGAAGTAACATTTGCTATC-CTCAGTCTGCCCCAC
127 TC-G-ACCTACTGCAACTTCAGAGGAA-TAACA-TT-C-ATCGCTCAATCCGCCCCAC
* * * ** *
26223528 TACAACTTCAGGGGGATAAGACTTGCTTTCTT-AAGTCAGCTCCACTGCAACTTCAGGGAGATAA
1 TGCAACTTCAGGGAGATAGGA-TTG-TGGCTTCAA-TCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * *
26223592 GACTTGCTTTCTTTAGTCTGCTCTACTGCAATTTCAGAGAGATAAGAT
63 GATTTGC---CATGA-TCTGCTCTACTGCAACTTAAGAGAGATAAGAT
26223640 TTGTAACTTT
Statistics
Matches: 402, Mismatches: 50, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
180 99 0.25
181 151 0.38
182 55 0.14
183 4 0.01
184 56 0.14
185 8 0.02
186 29 0.07
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (178 bp):
TGCAACTTCAGGGAGATAGGATTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
TTGCCATGATCTGCTCTACTGCAACTTAAGAGAGATAAGATCTATATTTGATGAATTTAATTCGA
CCTACTGCAACTTCAGAGGAATAACATTCATCGCTCAATCCGCCCCAC
Found at i:26223554 original size:45 final size:45
Alignment explanation
Indices: 26223488--26223599 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 45
26223478 TCCACTGCGG
* * * *
26223488 CTTCAGGGA-AGTAACATTTGCTATCCTCAGTCTGCCCCACTACAA
1 CTTCAGGGAGA-TAAGACTTGCTATCCTAAGTCAGCCCCACTACAA
* * * * *
26223533 CTTCAGGGGGATAAGACTTGCTTTCTTAAGTCAGCTCCACTGCAA
1 CTTCAGGGAGATAAGACTTGCTATCCTAAGTCAGCCCCACTACAA
26223578 CTTCAGGGAGATAAGACTTGCT
1 CTTCAGGGAGATAAGACTTGCT
26223600 TTCTTTAGTC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 55 0.98
46 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (45 bp):
CTTCAGGGAGATAAGACTTGCTATCCTAAGTCAGCCCCACTACAA
Found at i:26223600 original size:45 final size:45
Alignment explanation
Indices: 26223524--26223638 Score: 167
Period size: 45 Copynumber: 2.6 Consensus size: 45
26223514 TCAGTCTGCC
* *
26223524 CCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTAAGTCAGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTAAGTCAGCT
* *
26223569 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTTAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTAAGTCAGCT
* * *
26223614 CTACTGCAATTTCAGAGAGATAAGA
1 CCACTGCAACTTCAGGGAGATAAGA
26223639 TTTGTAACTT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (45 bp):
CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTAAGTCAGCT
Found at i:26223711 original size:44 final size:43
Alignment explanation
Indices: 26223566--26223728 Score: 123
Period size: 44 Copynumber: 3.7 Consensus size: 43
26223556 TCTTAAGTCA
* * *
26223566 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTT-TCTTTAGTCT
1 GCTCCACTGCAACTTTAGGGAGATAAGA-TT--TTAACTTTAATCT
* * * *
26223611 GCTCTACTGCAA-TTTCAGAGAGATAAGATTTGTAACTTTTATCC
1 GCTCCACTGCAACTTT-AGGGAGATAAGATTT-TAACTTTAATCT
** * * *
26223655 ATTCCATTGCAACTTTAGGGAGATAGGATTATTAGCTTTAATCT
1 GCTCCACTGCAACTTTAGGGAGATAAGATT-TTAACTTTAATCT
* * *
26223699 GCTCCACTGCAACTTCAGGAAAATAAGATT
1 GCTCCACTGCAACTTTAGGGAGATAAGATT
26223729 CACCATCTTC
Statistics
Matches: 90, Mismatches: 23, Indels: 11
0.73 0.19 0.09
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 62 0.69
45 26 0.29
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (43 bp):
GCTCCACTGCAACTTTAGGGAGATAAGATTTTAACTTTAATCT
Found at i:26235631 original size:6 final size:6
Alignment explanation
Indices: 26235608--26235642 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
26235598 AAACAATAAT
* *
26235608 CAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
26235643 TTCAACACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:26235721 original size:45 final size:45
Alignment explanation
Indices: 26235622--26235726 Score: 142
Period size: 45 Copynumber: 2.3 Consensus size: 45
26235612 AACGGTAGCA
* *
26235622 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAGTTT
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAGATC
* *
26235667 GTAATAGTAACGGTAACAGTATTCAACACACAAAGTG-TCGA-ATC
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCT-GAGATC
26235711 GATAACAGTAACAGTA
1 G-TAACAGTAACAGTA
26235727 GTCAGCATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 3 0.06
45 49 0.94
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAGATC
Found at i:26236965 original size:30 final size:29
Alignment explanation
Indices: 26236931--26236987 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
26236921 TTATCAAATA
26236931 AATAAA-ATCTTTTAATATAATAATTTAATT
1 AATAAATATCTTTTAAT-TAA-AATTTAATT
*
26236961 AATAAATATCTTTTACTTAAAATTTAA
1 AATAAATATCTTTTAATTAAAATTTAA
26236988 GAAAATATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 7 0.28
30 9 0.36
31 9 0.36
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (29 bp):
AATAAATATCTTTTAATTAAAATTTAATT
Found at i:26237105 original size:16 final size:17
Alignment explanation
Indices: 26237080--26237113 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26237070 GATTTATTTA
26237080 ATAATCTAAT-ATCATT
1 ATAATCTAATCATCATT
*
26237096 ATAATTTAATCATCATT
1 ATAATCTAATCATCATT
26237113 A
1 A
26237114 ATTATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAATCTAATCATCATT
Found at i:26240165 original size:43 final size:43
Alignment explanation
Indices: 26240099--26240221 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
26240089 GGCTCGTACA
* * *
26240099 ATGCCAACGTCCCAGATGAGGTCTTACATGTAATCAC-AGATCG
1 ATGCCAACGTCCCAGATGAGGTCTTACACGAAAACACAAG-TCG
26240142 ATGCC-ACTGTCCCAGAT-AGGGTCTTACACGAAAACACAAGTCG
1 ATGCCAAC-GTCCCAGATGA-GGTCTTACACGAAAACACAAGTCG
* *
26240185 ATGCCAACGTCCTAGATGTGGTCTTACACGAAAACAC
1 ATGCCAACGTCCCAGATGAGGTCTTACACGAAAACAC
26240222 TTATCGAAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
42 3 0.04
43 63 0.90
44 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAGATGAGGTCTTACACGAAAACACAAGTCG
Found at i:26241519 original size:41 final size:41
Alignment explanation
Indices: 26241455--26241837 Score: 423
Period size: 41 Copynumber: 9.4 Consensus size: 41
26241445 CTTTAGGGTA
* * *
26241455 TTTAGCGGCGCTTCTTT-AA-AAGCGTCGCTAATGAGTAGACA
1 TTTAGCGGCG-TT-TTTCAAGAAGCGCCGCTAATGAGCAGACC
* *
26241496 TTTAGCGGCATTTTTCAAGAAGCGCCGCTAATGAGTAGACC
1 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
* * *
26241537 TTTAGCGGCGTTTTTCAGGATGCGCTGCTAATGAGCAGACC
1 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
* * * * *
26241578 TTTAGTGGCG-TTTTCAGGATGCGTCGCTAATGAGTAGACC
1 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
* * * * *
26241618 TTTAGCGGCATTTTTTAAGAAACGCCGCTAATGAGTAGATC
1 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
* *
26241659 TTTAGCGGCGTTTTTCATTG-AGCCCCGCTAATGAGCAGACC
1 TTTAGCGGCGTTTTTCA-AGAAGCGCCGCTAATGAGCAGACC
* * * *
26241700 TTTAGCGTCTTTTTTCATGAGGCGCCGCTAATGAGCAGACC
1 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
* * *
26241741 TTTAGCGGCGTTTTTCAAGAAACGCCGTTAATGAACAGACC
1 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
* * * *
26241782 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAGTGCGCAAACC
1 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
*
26241823 TTTAGCGGTGTTTTT
1 TTTAGCGGCGTTTTT
26241838 GGCGAAGTGT
Statistics
Matches: 291, Mismatches: 46, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.01
40 41 0.14
41 246 0.85
42 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGAGCAGACC
Found at i:26241693 original size:122 final size:123
Alignment explanation
Indices: 26241476--26241836 Score: 467
Period size: 122 Copynumber: 3.0 Consensus size: 123
26241466 TTCTTTAAAA
* *
26241476 GCGTCGCTAATGAGTAGACATTTAGCGGCATTTTTCAAGAAGCGCCGCTAATGAGTAGACCTTTA
1 GCGTCGCTAATGAGTAGACCTTTAGCGGCATTTTTCAAGAAACGCCGCTAATGAGTAGACCTTTA
* * * *
26241541 GCGGCGTTTTTCAGGATGCGCTGCTAATGAGCAGACCTTTAGTGGC-GTTTTCAGGAT
66 GCGGCGTTTTTCAGGATGCCCCGCTAATGAGCAGACCTTTAGCGGCTGTTTTCAGGAG
* *
26241598 GCGTCGCTAATGAGTAGACCTTTAGCGGCATTTTTTAAGAAACGCCGCTAATGAGTAGATCTTTA
1 GCGTCGCTAATGAGTAGACCTTTAGCGGCATTTTTCAAGAAACGCCGCTAATGAGTAGACCTTTA
* * * *
26241663 GCGGCGTTTTTCATTGA-GCCCCGCTAATGAGCAGACCTTTAGCGTCTTTTTTCATGAG
66 GCGGCGTTTTTCA-GGATGCCCCGCTAATGAGCAGACCTTTAGCGGCTGTTTTCAGGAG
* * * * **
26241721 GCGCCGCTAATGAGCAGACCTTTAGCGGCGTTTTTCAAGAAACGCCGTTAATGAACAGACCTTTA
1 GCGTCGCTAATGAGTAGACCTTTAGCGGCATTTTTCAAGAAACGCCGCTAATGAGTAGACCTTTA
* * * * * * *
26241786 GCGGCGTTTTTAAAGAAGCGCCGCTAGTGCGCAAACCTTTAGCGG-TGTTTT
66 GCGGCGTTTTTCAGGATGCCCCGCTAATGAGCAGACCTTTAGCGGCTGTTTT
26241837 TGGCGAAGTG
Statistics
Matches: 208, Mismatches: 28, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
122 106 0.51
123 102 0.49
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (123 bp):
GCGTCGCTAATGAGTAGACCTTTAGCGGCATTTTTCAAGAAACGCCGCTAATGAGTAGACCTTTA
GCGGCGTTTTTCAGGATGCCCCGCTAATGAGCAGACCTTTAGCGGCTGTTTTCAGGAG
Found at i:26242556 original size:21 final size:21
Alignment explanation
Indices: 26242508--26242565 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
26242498 TAGGGTTTTA
26242508 ATTAA-GGTTTAGGGTTAAGG
1 ATTAAGGGTTTAGGGTTAAGG
* * *
26242528 GTTAAGGGTTTATGGTTTAGG
1 ATTAAGGGTTTAGGGTTAAGG
* *
26242549 ATTTAGGGGTTAAGGGT
1 A-TTAAGGGTTTAGGGT
26242566 CGGGTTAGAG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
20 4 0.14
21 13 0.45
22 12 0.41
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (21 bp):
ATTAAGGGTTTAGGGTTAAGG
Found at i:26245980 original size:20 final size:19
Alignment explanation
Indices: 26245937--26245990 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 19
26245927 AACTTATTAA
26245937 TATATATATTTT-AA-AGTT
1 TATATATATTTTCAATA-TT
*
26245955 AATATATATTTTCAATATT
1 TATATATATTTTCAATATT
26245974 TAT-TATATTTTCAATAT
1 TATATATATTTTCAATAT
26245991 ATTTTTACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 25 0.78
19 6 0.19
20 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (19 bp):
TATATATATTTTCAATATT
Found at i:26246003 original size:20 final size:18
Alignment explanation
Indices: 26245962--26246005 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
26245952 GTTAATATAT
*
26245962 ATTTTCAATATTTATTAT
1 ATTTTCAATATTTATTAA
*
26245980 ATTTTCAATATATTTTTACA
1 ATTTTCAATAT-TTATTA-A
26246000 ATTTTC
1 ATTTTC
26246006 TTTATACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 5 0.23
20 6 0.27
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTCAATATTTATTAA
Found at i:26246054 original size:15 final size:13
Alignment explanation
Indices: 26246026--26246050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26246016 TTACTAATAT
26246026 ATATATAATTTTA
1 ATATATAATTTTA
26246039 ATATATAATTTT
1 ATATATAATTTT
26246051 TTAAAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATATAATTTTA
Found at i:26246241 original size:13 final size:13
Alignment explanation
Indices: 26246225--26246389 Score: 109
Period size: 13 Copynumber: 12.5 Consensus size: 13
26246215 TTACTAAAAT
*
26246225 TTACTTTAATATA
1 TTACTTAAATATA
*
26246238 TTACTTGAATATA
1 TTACTTAAATATA
*
26246251 TTACTTAAATAAA
1 TTACTTAAATATA
*
26246264 TTACTTAAATACA
1 TTACTTAAATATA
* *
26246277 CTACTTACTAAAAT-
1 TTACTTA--AATATA
** *
26246291 TTGGTTAAATTTA
1 TTACTTAAATATA
*
26246304 TTACTTAAATATG
1 TTACTTAAATATA
* * *
26246317 CTACTCAAATACA
1 TTACTTAAATATA
*
26246330 TTACTTACTAAAAT-
1 TTACTTA--AATATA
** *
26246344 TTGTTTAAATTTA
1 TTACTTAAATATA
*
26246357 TTACTTAAATATG
1 TTACTTAAATATA
*
26246370 TTACTTAAATACA
1 TTACTTAAATATA
26246383 TTACTTA
1 TTACTTA
26246390 CTAAAATTTA
Statistics
Matches: 112, Mismatches: 34, Indels: 12
0.71 0.22 0.08
Matches are distributed among these distances:
12 6 0.05
13 91 0.81
14 9 0.08
15 6 0.05
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.44
Consensus pattern (13 bp):
TTACTTAAATATA
Found at i:26246306 original size:53 final size:53
Alignment explanation
Indices: 26246249--26246398 Score: 246
Period size: 53 Copynumber: 2.8 Consensus size: 53
26246239 TACTTGAATA
** *
26246249 TATTACTTAAATAAATTACTTAAATACACTACTTACTAAAATTTGGTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
* * *
26246302 TATTACTTAAATATGCTACTCAAATACATTACTTACTAAAATTTGTTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
26246355 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
26246399 AAGTATATAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 89 1.00
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.43
Consensus pattern (53 bp):
TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
Found at i:26246313 original size:23 final size:23
Alignment explanation
Indices: 26246281--26246398 Score: 65
Period size: 23 Copynumber: 4.5 Consensus size: 23
26246271 AATACACTAC
*
26246281 TTACTAAAATTTGGTTAAATTTA
1 TTACTAAAATTTGCTTAAATTTA
* *
26246304 TTACTTAAATATGCTACTCAAATACATTA
1 TTACTAAAATTTGCT--T-AAAT---TTA
*
26246333 CTTACTAAAATTTGTTTAAATTTA
1 -TTACTAAAATTTGCTTAAATTTA
*
26246357 TTACTTAAATATGTTACTTAAATACATTA
1 TTAC-TAAA-AT-TTGCTTAAAT---TTA
26246386 CTTACTAAAATTT
1 -TTACTAAAATTT
26246399 AAGTATATAT
Statistics
Matches: 73, Mismatches: 8, Indels: 24
0.70 0.08 0.23
Matches are distributed among these distances:
23 16 0.22
24 7 0.10
25 3 0.04
26 12 0.16
27 6 0.08
28 3 0.04
29 10 0.14
30 16 0.22
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (23 bp):
TTACTAAAATTTGCTTAAATTTA
Found at i:26246614 original size:16 final size:16
Alignment explanation
Indices: 26246595--26246649 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
26246585 ATTATATGTA
26246595 AACTTACATAATACAT
1 AACTTACATAATACAT
*
26246611 AACTTACAT-GT---T
1 AACTTACATAATACAT
*
26246623 ACCTTACATAATACAT
1 AACTTACATAATACAT
*
26246639 AACTTATATAA
1 AACTTACATAA
26246650 ATTTTTTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
12 9 0.30
13 1 0.03
15 1 0.03
16 19 0.63
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (16 bp):
AACTTACATAATACAT
Found at i:26246985 original size:9 final size:9
Alignment explanation
Indices: 26246973--26247039 Score: 70
Period size: 9 Copynumber: 7.9 Consensus size: 9
26246963 CATTACTTTG
26246973 ATAACTTAC
1 ATAACTTAC
26246982 ATAACTTAC
1 ATAACTTAC
26246991 ATAA--TAC
1 ATAACTTAC
* *
26246998 ACAAGTTAC
1 ATAACTTAC
*
26247007 ATAGCTTAC
1 ATAACTTAC
*
26247016 TTAA--TAC
1 ATAACTTAC
26247023 ATAACTTAC
1 ATAACTTAC
26247032 ATAACTTA
1 ATAACTTA
26247040 TACATGTACA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
7 12 0.26
9 35 0.74
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:26247007 original size:25 final size:25
Alignment explanation
Indices: 26246975--26247039 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
26246965 TTACTTTGAT
26246975 AACTTACATAACTTACATAATACAC
1 AACTTACATAACTTACATAATACAC
* * * *
26247000 AAGTTACATAGCTTACTTAATACAT
1 AACTTACATAACTTACATAATACAC
26247025 AACTTACATAACTTA
1 AACTTACATAACTTA
26247040 TACATGTACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAC
Found at i:26250663 original size:21 final size:21
Alignment explanation
Indices: 26250611--26250681 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
26250601 CAGCTGCTTA
* * *
26250611 AAGCAGATGCGGCAACGAGAG
1 AAGCAGAGGCTGCAACGAGGG
26250632 AAGCAGAGGCTGCAACGAGGG
1 AAGCAGAGGCTGCAACGAGGG
* * *
26250653 AAGTAGAGGCTACAGCGAGGG
1 AAGCAGAGGCTGCAACGAGGG
*
26250674 AAACAGAG
1 AAGCAGAG
26250682 CAGCATAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.38, C:0.17, G:0.39, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCTGCAACGAGGG
Found at i:26251054 original size:43 final size:43
Alignment explanation
Indices: 26251019--26251401 Score: 255
Period size: 43 Copynumber: 8.9 Consensus size: 43
26251009 CGTTTTAAAA
26251019 AAAAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTTGT-GGT
1 AAAAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTT-TCGGT
* *
26251062 AAAAGCGT-CGCTAAAGATAATGATCTTTAGCGGCATTTGT-GGT
1 AAAAGC-TCCGCTAAAGATAATGGTCTTTAGCGGCGTTT-TCGGT
*
26251105 AAAAGCGT-CGCTAAAGATAATGGTCTTTAGCGGCGTTTGCGAG-
1 AAAAGC-TCCGCTAAAGATAATGGTCTTTAGCGGCGTTTTCG-GT
* * * * * *
26251148 AAAAGCGCCGCTAAAGATCAGGGTATTTAGCTGCGTTTTCTGT
1 AAAAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTTTCGGT
* * * * *
26251191 AAAAGCGT-CGTTAAAGATTAGGGTCTTTAGCGACGTTTGCAGG-
1 AAAAGC-TCCGCTAAAGATAATGGTCTTTAGCGGCGTTTTC-GGT
* * * * * *
26251234 AAATGCGCCGCTAAAAGGTCATGGTCTTTAGTGGCGTTTTCCG-
1 AAAAGCTCCGCT-AAAGATAATGGTCTTTAGCGGCGTTTTCGGT
* * * *
26251277 AATAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCTG-
1 AA-AAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTT-TCGGT
* * ** * * * *
26251321 AAAAGCGCCACTAAAGACCATGGCCTTTAGAGGCATTTGT-GGC
1 AAAAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTT-TCGGT
* * * ** *
26251364 GAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCAGCGTTT
1 AAAAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTT
26251402 ATTTCTAAAA
Statistics
Matches: 279, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
42 2 0.01
43 238 0.85
44 39 0.14
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
AAAAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTTTCGGT
Found at i:26251128 original size:86 final size:85
Alignment explanation
Indices: 26251019--26251401 Score: 351
Period size: 86 Copynumber: 4.4 Consensus size: 85
26251009 CGTTTTAAAA
* *
26251019 AAAAGC-TCCGCTAAAGATAATGGTCTTTAGCGGCGTTTGTGGTAAAAGCGTCGCTAAAGATAAT
1 AAAAGCGT-CGCTAAAGATAATGGTCTTTAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGATCAT
*
26251083 GATCTTTAGCGGCATTTGT-GGT
64 GGTCTTTAGCGGCATTT-TCGGT
* *
26251105 AAAAGCGTCGCTAAAGATAATGGTCTTTAGCGGCGTTTGCGAGAAAAGCGCCGCTAAAGATCAGG
1 AAAAGCGTCGCTAAAGATAATGGTCTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGATCATG
* * * *
26251170 GTATTTAGCTGCGTTTTCTGT
65 GTCTTTAGCGGCATTTTCGGT
* * * * * * *
26251191 AAAAGCGTCGTTAAAGATTAGGGTCTTTAGCGACGTTTGCAGGAAATGCGCCGCTAAAAGGTCAT
1 AAAAGCGTCGCTAAAGATAATGGTCTTTAGCGGCGTTTG-TGGAAAAGCGCCGCT-AAAGATCAT
* * *
26251256 GGTCTTTAGTGGCGTTTTCCG-
64 GGTCTTTAGCGGCATTTTCGGT
* * * * * *
26251277 AATAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCTGAAAAGCGCCACTAAAGACCAT
1 AA-AAGCGTCGCTAAAGATAATGGTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGATCAT
* * *
26251342 GGCCTTTAGAGGCATTTGT-GGC
64 GGTCTTTAGCGGCATTT-TCGGT
* * * ** *
26251364 GAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCAGCGTTT
1 AAAAGCGTCGCTAAAGATAATGGTCTTTAGCGGCGTTT
26251402 ATTTCTAAAA
Statistics
Matches: 248, Mismatches: 40, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
85 1 0.00
86 176 0.71
87 71 0.29
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (85 bp):
AAAAGCGTCGCTAAAGATAATGGTCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGATCATGG
TCTTTAGCGGCATTTTCGGT
Found at i:26251246 original size:129 final size:131
Alignment explanation
Indices: 26251018--26251337 Score: 373
Period size: 129 Copynumber: 2.5 Consensus size: 131
26251008 GCGTTTTAAA
* * *
26251018 AAAAAGCTCCGCTAAAGATAATGGTCTTTAGCGGCGTTTGT-GGTAAAAGCGTCGCTAAAGATAA
1 AAAAAGCGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTCTGTAAAAGCGTCGCTAAAGATAA
* * * * *
26251082 TGATCTTTAGCGGCATTTGTGGTAAAAGCGTCGCT-AAAGATAATGGTCTTTAGCGGCG-TTTGC
66 GGATCTTTAGCGACATTTGAGGTAAAAGCGCCGCTAAAAGATAATGGTCTTTAGCGGCGTTTTCC
26251145 G
131 G
* * * * *
26251146 AGAAAAGCGCCGCTAAAGATCAGGGTATTTAGCTGCGTTT-TCTGTAAAAGCGTCGTTAAAGATT
1 A-AAAAGCGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTCTGTAAAAGCGTCGCTAAAGATA
* * * * * *
26251210 AGGGTCTTTAGCGACGTTTGCAGG-AAATGCGCCGCTAAAAGGTCATGGTCTTTAGTGGCGTTTT
65 AGGATCTTTAGCGACATTTG-AGGTAAAAGCGCCGCTAAAAGATAATGGTCTTTAGCGGCGTTTT
26251274 CCG
129 CCG
* * * *
26251277 AATAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCTG-AAAAGCGCCACTAAAGA
1 AAAAAGCGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTCTGTAAAAGCGTCGCTAAAGA
26251338 CCATGGCCTT
Statistics
Matches: 159, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
128 2 0.01
129 78 0.49
130 69 0.43
131 10 0.06
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (131 bp):
AAAAAGCGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTCTGTAAAAGCGTCGCTAAAGATAA
GGATCTTTAGCGACATTTGAGGTAAAAGCGCCGCTAAAAGATAATGGTCTTTAGCGGCGTTTTCC
G
Found at i:26251516 original size:19 final size:19
Alignment explanation
Indices: 26251488--26251551 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
26251478 AATTTTCGAG
*
26251488 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26251507 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26251526 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
26251547 GATAT
1 GATAT
26251552 ATACAATCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26251570 original size:19 final size:21
Alignment explanation
Indices: 26251489--26251564 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
26251479 ATTTTCGAGG
26251489 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
26251508 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
26251529 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
26251550 ATATACAATCTTAGA
1 ATATACAATCTTAGA
26251565 AGATATGATT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.34
21 35 0.66
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:26251586 original size:23 final size:24
Alignment explanation
Indices: 26251520--26251587 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 24
26251510 ATGCAATCTT
*
26251520 AGATATGATATATGCAATCTT---
1 AGATATGATATATACAATCTTAGA
26251541 AGATATGATATATACAATCTTAGA
1 AGATATGATATATACAATCTTAGA
* *
26251565 AGATATGAT-TTTATAATCTTAGA
1 AGATATGATATATACAATCTTAGA
26251588 GATTTAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
21 20 0.49
23 12 0.29
24 9 0.22
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.38
Consensus pattern (24 bp):
AGATATGATATATACAATCTTAGA
Found at i:26252071 original size:21 final size:21
Alignment explanation
Indices: 26252027--26252068 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26252017 TTAATTTTGT
* *
26252027 TATTATTATTATATTATATAA
1 TATTATTATTATACTACATAA
26252048 TATTATTATTATACCTACATA
1 TATTATTATTATA-CTACATA
26252069 TATGTGCGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (21 bp):
TATTATTATTATACTACATAA
Found at i:26252435 original size:51 final size:52
Alignment explanation
Indices: 26252325--26252437 Score: 133
Period size: 51 Copynumber: 2.2 Consensus size: 52
26252315 TTCCACGTTT
* **
26252325 TATAT-TATACTTATATATTTCATTTTTTTGTAAATGCATGAATATATTTTA
1 TATATATATATTTATATATTTCATTTTTTCATAAATGCATGAATATATTTTA
* * * *
26252376 TATGTATATATTTATAT-TTTCCTTGTTTTCATAAATGCAT-TATGTATTTTA
1 TATATATATATTTATATATTTCATT-TTTTCATAAATGCATGAATATATTTTA
26252427 TATATATATAT
1 TATATATATAT
26252438 AAGTTTTATA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
51 29 0.56
52 23 0.44
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (52 bp):
TATATATATATTTATATATTTCATTTTTTCATAAATGCATGAATATATTTTA
Found at i:26256837 original size:19 final size:18
Alignment explanation
Indices: 26256810--26256845 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
26256800 TTTTAAAAAA
26256810 AAAAGAAAAGAAAGAAAG
1 AAAAGAAAAGAAAGAAAG
26256828 AAAAGAAAAAGAAAGAAA
1 AAAAG-AAAAGAAAGAAA
26256846 AATGAAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAGAAAGAAAG
Found at i:26256858 original size:24 final size:24
Alignment explanation
Indices: 26256804--26256855 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
26256794 AAATTTTTTT
*
26256804 AAAAAAAAAAGAAAAGAAAGAAAG
1 AAAAGAAAAAGAAAAGAAAGAAAG
*
26256828 AAAAGAAAAAG-AAAGAAA-AATG
1 AAAAGAAAAAGAAAAGAAAGAAAG
26256850 AAAAGA
1 AAAAGA
26256856 GAAGCAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 9 0.35
23 7 0.27
24 10 0.38
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (24 bp):
AAAAGAAAAAGAAAAGAAAGAAAG
Found at i:26256864 original size:18 final size:17
Alignment explanation
Indices: 26256808--26256864 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
26256798 TTTTTTAAAA
26256808 AAAAAAGAAAAGA-AAG
1 AAAAAAGAAAAGAGAAG
26256824 AAAGAAAAGAAAA-AGAAAG
1 -AA-AAAAGAAAAGAG-AAG
*
26256843 AAAAATGAAAAGAGAAG
1 AAAAAAGAAAAGAGAAG
*
26256860 CAAAA
1 AAAAA
26256865 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
17 18 0.53
18 13 0.38
19 3 0.09
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (17 bp):
AAAAAAGAAAAGAGAAG
Found at i:26258263 original size:132 final size:132
Alignment explanation
Indices: 26258078--26259568 Score: 2153
Period size: 132 Copynumber: 11.3 Consensus size: 132
26258068 GTGAAACACC
* * * * * * *
26258078 AAGCCTTGTCTCCCTGAGCAGCAGTGTAGTAGATTAAAGATTGTAGATCTTATCTCCCTAAGAAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
26258143 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTAGGAAACAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
26258208 TA
131 CA
* * *
26258210 AAGTCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTACT-GATCTTATCTCCCTAAGAA
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATT-GTAGATCTTATCTCCCTAAGCA
* * * * * * * *
26258274 GTAGTGGAGCAGAGCGAAGACGGCGAATCTTATCTTTCCAAGCTAGTAGCAAACAGATTTAAGCC
65 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
26258339 ATA
130 ACA
* * *
26258342 AAGTCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTACT-GATCTTATCTCCCTAAGAA
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATT-GTAGATCTTATCTCCCTAAGCA
* * * *
26258406 GTAGTGGAGCAGAGCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
65 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
26258471 ACA
130 ACA
* *
26258474 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGAAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * *
26258539 TAGTGGAGCAGATCGAAGATGACAAATCTTATCTTTCCAAGATAGTGGAAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
26258604 CC
131 CA
* * * *
26258606 AAGCCTTGTCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
26258671 TAGTGAAGTAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
26258736 CA
131 CA
* * * * * *
26258738 AAGCCTTGTCTCTCTGAACAGCAACAGAAAAGGTTAAAGATTGTAGATCTTATCTCCCTAAGTAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * * *
26258803 TAGTAGAGTAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
26258868 CC
131 CA
* * * *
26258870 AAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCTTAAGCAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
26258935 TAGTGGAGTAGATTAAAGATGGCAAATCTTATCTTTCCAAGATAGTAGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
26259000 CA
131 CA
* * *
26259002 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCTTAAGTAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
*
26259067 TAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
26259132 CA
131 CA
*
26259134 AAGTCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * ** *
26259199 TAGTGGAGCAGATCAAATACGTAAAATCTTATCTTTCCAAGATAGTGGGAAGCATATTTAAGCCA
66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
26259264 CC
131 CA
* * *
26259266 AAGCTTTGTCTCTCTGAGCAGCAGCGGAGTAGATTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
*
26259331 TAGTGGAGCAGATCAAAG-TCGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCATATTTAAGCC
66 TAGTGGAGCAGATCAAAGAT-GGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
26259395 ACC
130 ACA
* *
26259398 AAGCTTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATTTCCCTAAGCAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
26259463 TAGTGGAGCAGATCAAAG-TCGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 TAGTGGAGCAGATCAAAGAT-GGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
26259527 ACC
130 ACA
* * * *
26259530 AAGCCTTATCTCCCTGAGCAGTAGCGGAGTAGGTTGAAG
1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAG
26259569 TTGCAGTGAA
Statistics
Matches: 1244, Mismatches: 112, Indels: 6
0.91 0.08 0.00
Matches are distributed among these distances:
131 1 0.00
132 1242 1.00
133 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CA
Found at i:26258572 original size:44 final size:44
Alignment explanation
Indices: 26258124--26258572 Score: 130
Period size: 44 Copynumber: 10.2 Consensus size: 44
26258114 AAGATTGTAG
** *
26258124 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGATGGCAA
1 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
* * * *
26258168 ATCTTATCTTTCC-AAGATAGTAG-GAAACAGATTTAAGCCAT-A-AA
1 ATCTTATC-TCCCTAAGA-AGTAGTGGAGCAGATTGAAG--ATGACAA
* * * * * * * * * * **
26258212 GTCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTACTG
1 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
** * * *
26258256 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGAGCGAAGACGGCGA
1 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
* * ** * *
26258300 ATCTTATCTTTCC-AAGCTAGTAG-CAAACAGATTTAAGCCAT-A-AA
1 ATCTTATC-TCCCTAAG-AAGTAGTGGAGCAGATTGAAG--ATGACAA
* * * * * * * * * * **
26258344 GTCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTACTG
1 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
** * * *
26258388 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGAGCGAAGACGGCGA
1 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
* * **
26258432 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGAAGTAGT-GG-AGCAGATTGAAGATGACAA
* * * * * * * * * * * *
26258475 AGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAG
1 A-TCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
*
26258520 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGACAA
1 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
26258564 ATCTTATCT
1 ATCTTATCT
26258573 TTCCAAGATA
Statistics
Matches: 269, Mismatches: 112, Indels: 48
0.63 0.26 0.11
Matches are distributed among these distances:
42 8 0.03
43 23 0.09
44 208 0.77
45 25 0.09
46 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTGAAGATGACAA
Found at i:26260126 original size:19 final size:19
Alignment explanation
Indices: 26260098--26260161 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
26260088 AATTTTCGAG
*
26260098 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26260117 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26260136 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
26260157 GATAT
1 GATAT
26260162 ATACAATCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26260180 original size:19 final size:21
Alignment explanation
Indices: 26260099--26260172 Score: 116
Period size: 21 Copynumber: 3.6 Consensus size: 21
26260089 ATTTTCGAGG
26260099 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
26260118 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
26260139 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
26260160 ATATACAATCTTA
1 ATATACAATCTTA
26260173 CAAGATATGA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.35
21 33 0.65
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:26260403 original size:19 final size:21
Alignment explanation
Indices: 26260379--26260417 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
26260369 ACTGTTTTCT
*
26260379 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
26260398 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
26260418 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:26261004 original size:52 final size:51
Alignment explanation
Indices: 26260942--26261046 Score: 122
Period size: 52 Copynumber: 2.0 Consensus size: 51
26260932 CGTTTTAAAT
** *
26260942 TATACTTATATATTTCATT-TTTTTTTAAATGCATGAATATATTTTATATGTA
1 TATACTTATAT-TTTCATTGTTTTCATAAATGCAT-AATATATTTTATATATA
* * * *
26260994 TATATTTATATTTTCCTTGTTTTCATAAATGCATTATGTATTTTATATATA
1 TATACTTATATTTTCATTGTTTTCATAAATGCATAATATATTTTATATATA
26261045 TA
1 TA
26261047 AGTTTTATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
51 22 0.49
52 23 0.51
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (51 bp):
TATACTTATATTTTCATTGTTTTCATAAATGCATAATATATTTTATATATA
Found at i:26262102 original size:22 final size:22
Alignment explanation
Indices: 26262074--26262116 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
26262064 TAGCGGCGTT
*
26262074 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
26262096 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
26262117 GTTTTGGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.28, G:0.21, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:26262929 original size:15 final size:16
Alignment explanation
Indices: 26262901--26262931 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26262891 GGTAAGACAT
26262901 GATGTGATTATGATTC
1 GATGTGATTATGATTC
26262917 GATGTGA-TATGATTC
1 GATGTGATTATGATTC
26262932 ATAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.42
Consensus pattern (16 bp):
GATGTGATTATGATTC
Found at i:26265446 original size:8 final size:8
Alignment explanation
Indices: 26265433--26265459 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
26265423 ATTTATCAGC
26265433 TTTTATTA
1 TTTTATTA
26265441 TTTTATTA
1 TTTTATTA
26265449 TTTTATTA
1 TTTTATTA
26265457 TTT
1 TTT
26265460 CGATTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTATTA
Found at i:26270236 original size:43 final size:43
Alignment explanation
Indices: 26270188--26270337 Score: 178
Period size: 43 Copynumber: 3.4 Consensus size: 43
26270178 TCGAATATAA
*
26270188 AGGTGGTTGCTAAGCGCTAATTCCACCAGATATCCATGTAAGT
1 AGGTGGTTGCTAAGTGCTAATTCCACCAGATATCCATGTAAGT
* *
26270231 AGGTGGTTGTTAAGTGCTAATTCCACCAGATATCC-TCGAATATA-A
1 AGGTGGTTGCTAAGTGCTAATTCCACCAGATATCCAT-G--TA-AGT
* * **
26270276 AGGTGGTTGCTAAGTGATGATTCCACTGGATATCCATGTAAGT
1 AGGTGGTTGCTAAGTGCTAATTCCACCAGATATCCATGTAAGT
26270319 AAGGTGGTTGCTAAGTGCT
1 -AGGTGGTTGCTAAGTGCT
26270338 GGTTCCCTCG
Statistics
Matches: 90, Mismatches: 10, Indels: 13
0.80 0.09 0.12
Matches are distributed among these distances:
42 2 0.02
43 36 0.40
44 17 0.19
45 33 0.37
46 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
AGGTGGTTGCTAAGTGCTAATTCCACCAGATATCCATGTAAGT
Found at i:26270274 original size:88 final size:89
Alignment explanation
Indices: 26270167--26270390 Score: 317
Period size: 89 Copynumber: 2.5 Consensus size: 89
26270157 CTCGGATTAG
* * *
26270167 ACCAAATATCCTCGAATATAAAGGTGGTTGCTAAGCGCTAATTCCACCAGATATCCATGTAAGT-
1 ACCAGATATCCTCGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCAGATATCCATGTAAGTA
*
26270231 AGGTGGTTGTTAAGTGCTAATTCC
66 AGGTGGTTGCTAAGTGCTAATTCC
* **
26270255 ACCAGATATCCTCGAATATAAAGGTGGTTGCTAAGTGATGATTCCACTGGATATCCATGTAAGTA
1 ACCAGATATCCTCGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCAGATATCCATGTAAGTA
**
26270320 AGGTGGTTGCTAAGTGCTGGTTCC
66 AGGTGGTTGCTAAGTGCTAATTCC
* * *
26270344 -CTCGGATAACCTTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCAC
1 AC-CAGATATCCTCGAATATAAAGGTGGTTGCTAAGTGCTGATTCCAC
26270391 AGTGTAATTA
Statistics
Matches: 121, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
88 59 0.49
89 62 0.51
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (89 bp):
ACCAGATATCCTCGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCAGATATCCATGTAAGTA
AGGTGGTTGCTAAGTGCTAATTCC
Found at i:26270299 original size:45 final size:44
Alignment explanation
Indices: 26270167--26270390 Score: 217
Period size: 45 Copynumber: 5.0 Consensus size: 44
26270157 CTCGGATTAG
* * *
26270167 ACCAAATATCCTCGAATATAAAGGTGGTTGCTAAGCGCTAATTCC
1 ACCAGATATCCT-GAATATAAAGGTGGTTGCTAAGTGCTGATTCC
* * *
26270212 ACCAGATATCCATG--TA-AGTAGGTGGTTGTTAAGTGCTAATTCC
1 ACCAGATATCC-TGAATATA-AAGGTGGTTGCTAAGTGCTGATTCC
*
26270255 ACCAGATATCCTCGAATATAAAGGTGGTTGCTAAGTGATGATTCC
1 ACCAGATATCCT-GAATATAAAGGTGGTTGCTAAGTGCTGATTCC
** * *
26270300 ACTGGATATCCATGTAA-GT-AAGGTGGTTGCTAAGTGCTGGTTCC
1 ACCAGATATCC-TG-AATATAAAGGTGGTTGCTAAGTGCTGATTCC
* *
26270344 -CTCGGATAACCTTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
1 AC-CAGATATCC-TGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
26270389 AC
1 AC
26270391 AGTGTAATTA
Statistics
Matches: 149, Mismatches: 18, Indels: 23
0.78 0.09 0.12
Matches are distributed among these distances:
42 2 0.01
43 39 0.26
44 33 0.22
45 69 0.46
46 6 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (44 bp):
ACCAGATATCCTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
Found at i:26275728 original size:16 final size:15
Alignment explanation
Indices: 26275696--26275724 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26275686 TTGTGTCTTT
26275696 TTTTTTTAATATTTA
1 TTTTTTTAATATTTA
26275711 TTTTTTTAATATTT
1 TTTTTTTAATATTT
26275725 TATTATACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTTAATATTTA
Found at i:26279597 original size:15 final size:15
Alignment explanation
Indices: 26279561--26279597 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
26279551 TTGAACATAT
*
26279561 ATGATTAGGGCTCAA
1 ATGATTTGGGCTCAA
26279576 ATGATTTGGGCTCAA
1 ATGATTTGGGCTCAA
26279591 ATGATTT
1 ATGATTT
26279598 ATACTTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (15 bp):
ATGATTTGGGCTCAA
Found at i:26283685 original size:25 final size:25
Alignment explanation
Indices: 26283657--26283747 Score: 87
Period size: 25 Copynumber: 3.6 Consensus size: 25
26283647 TCATTAGAGT
*
26283657 TACCGATTTATAGCTCGTAAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
*
26283682 TACCGATTCATAGCTCGTGAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
* * *
26283707 TATCGA-TCTTCAGCTC-AAATGAGCA
1 TACCGATTCAT-AGCTCGTAA-GAGCA
* *
26283732 CACCGATTCACAGCTC
1 TACCGATTCATAGCTC
26283748 ATTTGAGCAT
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
24 4 0.08
25 47 0.89
26 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (25 bp):
TACCGATTCATAGCTCGTAAGAGCA
Found at i:26290996 original size:25 final size:25
Alignment explanation
Indices: 26290968--26291066 Score: 94
Period size: 25 Copynumber: 4.0 Consensus size: 25
26290958 TAGGGTTACT
*
26290968 GATTTATAGCTCATAAGAGCATACC
1 GATTCATAGCTCATAAGAGCATACC
* *
26290993 GATTCATAGCTCGTGAGAGCATACC
1 GATTCATAGCTCATAAGAGCATACC
* *
26291018 GA-TCTTTAGCTCA-AATGAGCATACT
1 GATTC-ATAGCTCATAA-GAGCATACC
* * *
26291043 GATTCACAGCTCGTATGAGCATAC
1 GATTCATAGCTCATAAGAGCATAC
26291067 ATGTACATGA
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
24 3 0.05
25 53 0.90
26 3 0.05
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (25 bp):
GATTCATAGCTCATAAGAGCATACC
Found at i:26294579 original size:13 final size:14
Alignment explanation
Indices: 26294552--26294584 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26294542 TAGATCTATA
26294552 AATTAAAAAAGAAT
1 AATTAAAAAAGAAT
*
26294566 AATTAAAATA-AAT
1 AATTAAAAAAGAAT
26294579 AATTAA
1 AATTAA
26294585 GATGGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
AATTAAAAAAGAAT
Found at i:26298167 original size:20 final size:20
Alignment explanation
Indices: 26298124--26298165 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
26298114 TAAAGAAAGT
26298124 AAATGCAATGGAAAATAATG
1 AAATGCAATGGAAAATAATG
26298144 AAATGCAAAT-GAAAATAA-G
1 AAATGC-AATGGAAAATAATG
26298163 AAA
1 AAA
26298166 ATTTGAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 14 0.67
21 3 0.14
ACGTcount: A:0.62, C:0.05, G:0.17, T:0.17
Consensus pattern (20 bp):
AAATGCAATGGAAAATAATG
Found at i:26300144 original size:18 final size:19
Alignment explanation
Indices: 26300114--26300149 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
26300104 CGACATTCGA
26300114 AATAAATAATTAATAAATT
1 AATAAATAATTAATAAATT
26300133 AATAAA-AATTAATAAAT
1 AATAAATAATTAATAAAT
26300150 ACAATATGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAAATAATTAATAAATT
Found at i:26302833 original size:105 final size:104
Alignment explanation
Indices: 26302608--26302835 Score: 273
Period size: 105 Copynumber: 2.2 Consensus size: 104
26302598 GTTCACACAA
* * * *
26302608 GCAAGGACATGGGCGTGTGTATAGGCCGTGTAACTCACTGTTTATGATTTAAGACCACATGGCCA
1 GCAAGGACATGAGCGTGTGTACAAGCCGTGTAACTCACTGTTTATGATTTAAGAACACATGGCCA
* * * * *
26302673 GGGACATGGGTGTGTGCCTAGGCTGTGTGAGCCATACGG
66 GGGACATGGGCGTGTGCCCAGGCTATGTAAGCCACACGG
* * *
26302712 GCAAGGACAT-AGGCGTGTGTCCAAGCCGTGTAACTCACTTTTTATGATTTAGAATAACACA-GG
1 GCAAGGACATGA-GCGTGTGTACAAGCCGTGTAACTCACTGTTTATGATTT--AAGAACACATGG
* *
26302775 -CAGATGACATGGGCGTGTGCCCAGGCTATGTAAGCTACACGG
63 CCAG-GGACATGGGCGTGTGCCCAGGCTATGTAAGCCACACGG
26302817 GCAAGGACATGAGCGTGTG
1 GCAAGGACATGAGCGTGTG
26302836 CCCAGGCTAT
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
104 47 0.45
105 50 0.48
106 8 0.08
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (104 bp):
GCAAGGACATGAGCGTGTGTACAAGCCGTGTAACTCACTGTTTATGATTTAAGAACACATGGCCA
GGGACATGGGCGTGTGCCCAGGCTATGTAAGCCACACGG
Found at i:26302877 original size:42 final size:42
Alignment explanation
Indices: 26302780--26302891 Score: 161
Period size: 42 Copynumber: 2.7 Consensus size: 42
26302770 ACAGGCAGAT
*
26302780 GACATGGGCGTGTGCCCAGGCTATGTAAGCTACACGGGCAAG
1 GACATGGGCGTGTGCCCAGGCTATGTAAGCCACACGGGCAAG
* *
26302822 GACATGAGCGTGTGCCCAGGCTATGTGAGCCACACGGGCAAG
1 GACATGGGCGTGTGCCCAGGCTATGTAAGCCACACGGGCAAG
* * * *
26302864 GACATGGGTGTGTGTCTAGGCCATGTAA
1 GACATGGGCGTGTGCCCAGGCTATGTAA
26302892 CTTATTTTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.23, C:0.22, G:0.36, T:0.19
Consensus pattern (42 bp):
GACATGGGCGTGTGCCCAGGCTATGTAAGCCACACGGGCAAG
Found at i:26304339 original size:13 final size:12
Alignment explanation
Indices: 26304321--26304363 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
26304311 TGTAACACGG
26304321 ATAAAATAATTAT
1 ATAAAA-AATTAT
26304334 ATAAAAAATT-T
1 ATAAAAAATTAT
*
26304345 ATAAAAAGTTAAT
1 ATAAAAAATT-AT
26304358 ATAAAA
1 ATAAAA
26304364 TTAAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 10 0.37
12 4 0.15
13 13 0.48
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAAAAAATTAT
Found at i:26304953 original size:14 final size:16
Alignment explanation
Indices: 26304922--26304954 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26304912 AAGAAATCAG
26304922 TAATCTAACTTATATT
1 TAATCTAACTTATATT
26304938 TAATCTAA-TT-TATT
1 TAATCTAACTTATATT
26304952 TAA
1 TAA
26304955 CTTATAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 2 0.12
16 8 0.47
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATCTAACTTATATT
Found at i:26311381 original size:25 final size:24
Alignment explanation
Indices: 26311353--26311405 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
26311343 CACAGCTTGC
* *
26311353 ATGAACTTTCCGTTATTCAGCTCGT
1 ATGAACTTTCCGTT-TACAACTCGT
*
26311378 ATGAGCTTTCCGTTTACAACTCGT
1 ATGAACTTTCCGTTTACAACTCGT
26311402 ATGA
1 ATGA
26311406 GCATACAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (24 bp):
ATGAACTTTCCGTTTACAACTCGT
Found at i:26311405 original size:24 final size:25
Alignment explanation
Indices: 26311353--26311407 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
26311343 CACAGCTTGC
* * *
26311353 ATGAACTTTCCGTTATTCAGCTCGT
1 ATGAGCTTTCCGTTATACAACTCGT
26311378 ATGAGCTTTCCGTT-TACAACTCGT
1 ATGAGCTTTCCGTTATACAACTCGT
26311402 ATGAGC
1 ATGAGC
26311408 ATACAAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (25 bp):
ATGAGCTTTCCGTTATACAACTCGT
Found at i:26311926 original size:19 final size:19
Alignment explanation
Indices: 26311902--26311938 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26311892 ATTTAGCCAA
*
26311902 TGTTGGTATATAATTGTTT
1 TGTTGGTATATAAATGTTT
26311921 TGTTGGTATATAAATGTT
1 TGTTGGTATATAAATGTT
26311939 GGTATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (19 bp):
TGTTGGTATATAAATGTTT
Found at i:26314430 original size:6 final size:6
Alignment explanation
Indices: 26314419--26314459 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
26314409 TCGTTCATAA
26314419 TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT TAATT
1 TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT TAATT
26314460 ACTTAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TAATTT
Found at i:26330827 original size:26 final size:26
Alignment explanation
Indices: 26330798--26330847 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26330788 TATTACTTGC
*
26330798 TGTTCTTGGAATATTTTATTCTTTGT
1 TGTTCTTGGAATACTTTATTCTTTGT
*
26330824 TGTTCTTGGAATACTTTGTTCTTT
1 TGTTCTTGGAATACTTTATTCTTT
26330848 TCAAGATACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.14, C:0.10, G:0.16, T:0.60
Consensus pattern (26 bp):
TGTTCTTGGAATACTTTATTCTTTGT
Found at i:26331805 original size:44 final size:44
Alignment explanation
Indices: 26331695--26332167 Score: 280
Period size: 44 Copynumber: 10.8 Consensus size: 44
26331685 TAAAACCACA
* * * * ****
26331695 AATCCTATTTCCCTGAAGTTGAAGTGGAGCGGATTGAAGATGGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
* *
26331739 AAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAAT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
* * ****
26331784 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGATGGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
* * * * * *
26331828 AAGCCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCCAAT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
* * * * * **
26331873 AATCCTATATCCCTGAAGTTGTAGTGGAGCGGATT-AAAATGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
* * * * *
26331916 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC--T
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
* * * *** * *
26331957 AGTCTTATCACTCTGAAGTTGCAGCATAGCAGACT-AAG-CAAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAC-AAT
* * * **
26332000 AGATCTTATCCCCCTGAAGTTGCAGTGGGGCAGATTGAAGATGACG
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-CAAT
* ** *
26332046 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGACAGAAGA-AGCT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACA-AT
* * * * *
26332090 AATCCTATCTCCCTGAAGTTGCAATGGAGCGGATT-AAAACAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
* * *
26332133 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
26332168 CGCATCCAGT
Statistics
Matches: 322, Mismatches: 91, Indels: 32
0.72 0.20 0.07
Matches are distributed among these distances:
40 23 0.07
41 9 0.03
43 18 0.06
44 167 0.52
45 103 0.32
46 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAAT
Found at i:26331848 original size:89 final size:89
Alignment explanation
Indices: 26331695--26331907 Score: 336
Period size: 89 Copynumber: 2.4 Consensus size: 89
26331685 TAAAACCACA
* * *
26331695 AATCCTATTTCCCTGAAGTTGAAGTGGAGCGGATTGAAGATGGCAAGTCTTATCTCCCTGAAGTT
1 AATCCTATATCCCTGAAGTTGAAGTGGAGCGGATTGAAGATGGCAAGCCTTATCTCCCTAAAGTT
*
26331760 GCAGCGGAGCAGATTGAAGCCAAT
66 GCAGCGGAGCAGATTAAAGCCAAT
* * *
26331784 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGATGGCAAGCCTTATCTCCTTAAAGTT
1 AATCCTATATCCCTGAAGTTGAAGTGGAGCGGATTGAAGATGGCAAGCCTTATCTCCCTAAAGTT
* *
26331849 GCAGTGGAGTAGATTAAAGCCAAT
66 GCAGCGGAGCAGATTAAAGCCAAT
*
26331873 AATCCTATATCCCTGAAGTTGTAGTGGAGCGGATT
1 AATCCTATATCCCTGAAGTTGAAGTGGAGCGGATT
26331908 AAAATGATAG
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 114 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (89 bp):
AATCCTATATCCCTGAAGTTGAAGTGGAGCGGATTGAAGATGGCAAGCCTTATCTCCCTAAAGTT
GCAGCGGAGCAGATTAAAGCCAAT
Found at i:26332120 original size:217 final size:217
Alignment explanation
Indices: 26331740--26332226 Score: 590
Period size: 217 Copynumber: 2.2 Consensus size: 217
26331730 GAAGATGGCA
* * * * *
26331740 AGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGCAAACAATCCTATCCCCCTGAAGTTG
* * * * * *
26331805 CAGTGGAGCGGATTGAAGATGGCAAGCCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCC
66 CAGTGGAGCAGATTGAAGATGACAAGCCTTATCTCCCTAAAGTTACAGTGGAGCAGATCAAAG-C
* * ** *
26331870 AATAATCCTATATCCCTGAAGTTGTAGTGGAGCGGATTAAAATGATAGATCTTATCTCTCTGAAG
130 AATAATCCTATATCCCTGAAGTTGCAATGGAGCGGATTAAAACAACAGATCTTATCTCTCTGAAG
*
26331935 TTGCAG-AGAGCAGATCGCATCT
195 TTGCAGTAGAGCAGATCGCATCC
* * * *
26331957 AGTCTTATCACTCTGAAGTTGCAGCATAGCAGACT-AAGCAAACAGATCTTATCCCCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGCAAACA-ATCCTATCCCCCTGAAGTT
* * *
26332021 GCAGTGGGGCAGATTGAAGATGACGAA-TCTTATCTCCCTGAAGTTACAGTGGAGCAGA-CAGAA
65 GCAGTGGAGCAGATTGAAGATGAC-AAGCCTTATCTCCCTAAAGTTACAGTGGAGCAGATCA-AA
*
26332084 G-AAGCTAATCCTATCTCCCTGAAGTTGCAATGGAGCGGATTAAAACAACAGATCTTATCTCTCT
128 GCAA--TAATCCTATATCCCTGAAGTTGCAATGGAGCGGATTAAAACAACAGATCTTATCTCTCT
*
26332148 GAAGTTGCAGTAGAGTAGATCGCATCC
191 GAAGTTGCAGTAGAGCAGATCGCATCC
* ** * *
26332175 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCGGACAGAAG-AAACCAATCCTAT
1 AGTCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGCAAA-CAATCCTAT
26332227 GAAGTTGCAG
Statistics
Matches: 227, Mismatches: 35, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
215 2 0.01
216 8 0.04
217 160 0.70
218 52 0.23
219 5 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (217 bp):
AGTCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGCAAACAATCCTATCCCCCTGAAGTTG
CAGTGGAGCAGATTGAAGATGACAAGCCTTATCTCCCTAAAGTTACAGTGGAGCAGATCAAAGCA
ATAATCCTATATCCCTGAAGTTGCAATGGAGCGGATTAAAACAACAGATCTTATCTCTCTGAAGT
TGCAGTAGAGCAGATCGCATCC
Found at i:26334003 original size:3 final size:3
Alignment explanation
Indices: 26333995--26334024 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
26333985 ACTTCGTTAC
26333995 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26334025 ATTGTTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26334041 original size:9 final size:8
Alignment explanation
Indices: 26333997--26334060 Score: 58
Period size: 9 Copynumber: 7.5 Consensus size: 8
26333987 TTCGTTACTA
26333997 TTATTATT
1 TTATTATT
26334005 ATTATTATT
1 -TTATTATT
26334014 ATTATTATT
1 -TTATTATT
* *
26334023 ATATTGTT
1 TTATTATT
26334031 TTCATTATT
1 TT-ATTATT
26334040 TTAATTA-T
1 TT-ATTATT
26334048 TTATATATT
1 TTAT-TATT
26334057 TTAT
1 TTAT
26334061 GCCAAATTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
7 2 0.04
8 12 0.26
9 33 0.70
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (8 bp):
TTATTATT
Found at i:26334058 original size:26 final size:26
Alignment explanation
Indices: 26333998--26334058 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 26
26333988 TCGTTACTAT
26333998 TATTATTATT-ATTATTATTATTATTA
1 TATTATT-TTCATTATTATTATTATTA
*
26334024 TATTGTTTTCATTATT-TTAATTATT-
1 TATTATTTTCATTATTATT-ATTATTA
26334049 TATATATTTT
1 TAT-TATTTT
26334059 ATGCCAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (26 bp):
TATTATTTTCATTATTATTATTATTA
Found at i:26335322 original size:24 final size:26
Alignment explanation
Indices: 26335288--26335339 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
26335278 TTTATTCATG
26335288 TTGTTTGAAGC-TTTTTATTTTAATT
1 TTGTTTGAAGCTTTTTTATTTTAATT
26335313 TTGTTT-AAGCTTTTTTATTTTAATT
1 TTGTTTGAAGCTTTTTTATTTTAATT
26335338 TT
1 TT
26335340 TAATTAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 4 0.15
25 22 0.85
ACGTcount: A:0.19, C:0.04, G:0.10, T:0.67
Consensus pattern (26 bp):
TTGTTTGAAGCTTTTTTATTTTAATT
Found at i:26336826 original size:126 final size:125
Alignment explanation
Indices: 26336587--26337263 Score: 737
Period size: 126 Copynumber: 5.5 Consensus size: 125
26336577 GATAAAATCA
* * ** * * * * * *
26336587 AAGCAGGATGATTTATCAGAAGGCTTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTAAAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGT
* * *
26336652 AGGTCCTGGAAAAATAATTTCAAATTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
26336712 AACCAGGATGCGTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCACTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGT
* * * * *
26336777 TGGTCCTCGAAGAAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
*
26336838 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGAAG--C--TT--T--A-T
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGT
* *
26336894 --G----AGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTT-
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
26336946 ATAGCAGGATGCTTTATGAGAAGAATTTGTGTAATCGTGCCCACGTGGACGCTCTTTTGCTACAG
1 A-AGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAG
** * * *
26337011 TAGGTCCTAAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAATG-TTGT
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTT-C
* * * **
26337073 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATTGCGTCCTCATGGACGTGCTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAG
* *
26337137 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGAAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * * * * *
26337197 TAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCACCCACATGGACCCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGT
26337262 AG
66 AG
26337264 CATGCTTGGG
Statistics
Matches: 470, Mismatches: 58, Indels: 49
0.81 0.10 0.08
Matches are distributed among these distances:
108 1 0.00
109 54 0.11
110 34 0.07
111 4 0.01
113 2 0.00
115 2 0.00
117 2 0.00
118 2 0.00
120 2 0.00
122 2 0.00
123 2 0.00
124 98 0.21
125 71 0.15
126 191 0.41
127 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:26336982 original size:109 final size:110
Alignment explanation
Indices: 26336789--26336994 Score: 326
Period size: 109 Copynumber: 1.9 Consensus size: 110
26336779 GTCCTCGAAG
* * *
26336789 AAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGCAGGATGCTTTAT
1 AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTAT
*
26336854 GAGAAGAATTTGTGAAATCGCGCCCTCGTGGAAGCTTTATGAGAA
66 GAGAAGAATTTGTGAAATCGCGCCCACGTGGAAGCTTTATGAGAA
*
26336899 AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTT-ATAGCAGGATGCTTTA
1 AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCA-AGCAGGATGCTTTA
* *
26336962 TGAGAAGAATTTGTGTAATCGTGCCCACGTGGA
65 TGAGAAGAATTTGTGAAATCGCGCCCACGTGGA
26336995 CGCTCTTTTG
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 1 0.01
109 53 0.60
110 34 0.39
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (110 bp):
AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTAT
GAGAAGAATTTGTGAAATCGCGCCCACGTGGAAGCTTTATGAGAA
Found at i:26337079 original size:235 final size:242
Alignment explanation
Indices: 26336660--26337263 Score: 744
Period size: 235 Copynumber: 2.5 Consensus size: 242
26336650 GTAGGTCCTG
* * * * * *
26336660 GAAAAATAATTTCAAATTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTCA-ACCAGGATGCG
1 GAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTT-ATAGCAGGATGCT
* * * * *
26336724 TTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCACTTTTGCTATAGTTGGTCCTCGAAG
64 TTATGAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAGGTCCTCAAAA
* *
26336789 AAATAATTTCGAGTTGATGTTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGCAGGATGCT-TTA
129 AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTATT-
*
26336853 TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGA-AGC-TT-T-A-T-G-A
193 TGAGAAGAATTTGTGAAATCGCGCCCTCATGGACAGCTTTCTAAGTAGCA
26336896 GAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTATAGCAGGATGCTTT
1 GAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTATAGCAGGATGCTTT
* *
26336961 ATGAGAAGAATTTGTGTAATCGTGCCCACGTGGACGCTCTTTTGCTACAGTAGGTCCT-AAAAAA
66 ATGAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAGGTCCTCAAAAAA
* *
26337025 ATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAATG-TTGTAAGCAGGATGCTATTT
131 ATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTT-CAAGCAGGATGCTATTT
* * * *
26337089 GAGAAGAATTTGTGAAATTGCGTCCTCATGGACGTGCTTTTGCTACAGTAGGTCCTG
194 GAGAAGAATTTGTGAAATCGCGCCCTCATGGAC-AGC-TTT-CTA-AGTA-G--C-A
* *
26337146 GAAAAATAATTTCGACTTGACGTTTCTGAGAAAATAGTATAAAATCGCTTCTAGCAGGATGCTTT
1 GAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTATAGCAGGATGCTTT
* ** * * *
26337211 ATAAGAAGAATTTGTGAAATCGCACCCACATGGACCCGCTTTTGCTACAGTAG
66 ATGAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAG
26337264 CATGCTTGGG
Statistics
Matches: 318, Mismatches: 31, Indels: 24
0.85 0.08 0.06
Matches are distributed among these distances:
234 44 0.14
235 118 0.37
236 39 0.12
237 2 0.01
239 2 0.01
241 1 0.00
243 1 0.00
244 1 0.00
246 1 0.00
250 109 0.34
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (242 bp):
GAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTATAGCAGGATGCTTT
ATGAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAGGTCCTCAAAAAA
ATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTATTTGA
GAAGAATTTGTGAAATCGCGCCCTCATGGACAGCTTTCTAAGTAGCA
Found at i:26339317 original size:22 final size:22
Alignment explanation
Indices: 26339231--26340434 Score: 1258
Period size: 22 Copynumber: 55.0 Consensus size: 22
26339221 TCAAATTATA
26339231 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339252 TTTAAGTTAAGTG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * **
26339273 TTTTATTTAAGAG-TTACAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339294 TTAAAGTTAAGGGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339316 TTTAATTTAAGGG-TTACGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339337 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339359 TTAAAGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339379 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26339401 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
26339423 TTTAATTTAA-AGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339444 TTTAATTTAAGGGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26339466 TTTAAGTTTAAGGGTTT-GGGTT
1 TTTAAG-TTAAGGGTTTAGGGTT
* *
26339488 TTAAAGTTAAGGG-TTAGGGCT
1 TTTAAGTTAAGGGTTTAGGGTT
** *
26339509 TTTAAGTTAAAAGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339531 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
26339553 TTTAATTTAAAGGTTTAAGATT
1 TTTAAGTTAAGGGTTTAGGGTT
26339575 TTTAAGTTAAGAGG-TTAGGGTT
1 TTTAAGTTAAG-GGTTTAGGGTT
*
26339597 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339618 TTTAAGCTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339640 TTTAATTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26339662 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339683 TTTAATTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
26339705 TTTAATTTAAGAATTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26339727 TTTAAGTTAAAGGG-TTAGGGTT
1 TTTAAGTT-AAGGGTTTAGGGTT
*
26339749 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339771 TTTAATTTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
26339792 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339813 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339835 TTTAAGTTAAAGGG-TTATGGTT
1 TTTAAGTT-AAGGGTTTAGGGTT
*
26339857 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339879 TTTAAGTTAAGGG-TTAGGGGT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339900 TTTAAGTTAAAGGTTTTGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339922 TTTAATTTATGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26339944 TTTAATTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26339966 TTTAAGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
**
26339988 TCAAAGTTAA--GTATTAGGG-T
1 TTTAAGTTAAGGGT-TTAGGGTT
* *
26340008 TTTAAGTTAAAGGTTTAGGGTA
1 TTTAAGTTAAGGGTTTAGGGTT
*
26340030 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26340052 TTTAAGTTAAGGGGTTATGGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
***
26340074 TTTAAGTTAAGGGTTTATCATT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
26340096 TCTAAGTTAAAGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26340118 TTTAAGTTAAGGGGTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26340140 TTTAAGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26340162 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26340184 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26340205 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
26340227 TAT-GGTTTATGGTTTTTAAATTAAGGGTT
1 TTTAAG-TTAAGG---GT---TT-AGGGTT
* * *
26340256 TAGGGTTTTTAAGTTAAGAGTTTTGGGGT
1 T-------TTAAGTTAAGGGTTTAGGGTT
26340285 TTTAAGTTAAAGGG-TTAGGGTT
1 TTTAAGTT-AAGGGTTTAGGGTT
*
26340307 TTTAAGTTAAGGGTTTTGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
26340328 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26340349 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26340371 TTTAAGTTAAGGTTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26340393 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26340414 TTCAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26340435 AGGGTTAAGG
Statistics
Matches: 995, Mismatches: 143, Indels: 90
0.81 0.12 0.07
Matches are distributed among these distances:
20 35 0.04
21 297 0.30
22 613 0.62
23 27 0.03
25 1 0.00
28 2 0.00
29 11 0.01
30 2 0.00
33 1 0.00
36 5 0.01
37 1 0.00
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:26339426 original size:65 final size:64
Alignment explanation
Indices: 26339231--26340434 Score: 1173
Period size: 65 Copynumber: 18.7 Consensus size: 64
26339221 TCAAATTATA
* * * **
26339231 TTTAAGTTAAGGGTTAGGGTTTTTAAGTT-AA-GTGTTAGGGTTTTTTATTTAAGAG-TTACAGT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAAGGT-TTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26339293 T
64 T
* * * * * *
26339294 TTAAAGTTAAGGGTTTAGTGTTTTTAA-TTTAAGGGTTACGGTTTTTAAGTTAAAGGTTTAGGGT
1 TTTAAGTTAAGGG-TTAG-GGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26339358 T
64 T
*
26339359 TTAAAGTTAAGGGTTAGGGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * * * *
26339423 TTTAATTTAAAGTTTAGTGTTTTTAATTTAAGGGTTTAGTGTTTTTAAGTTTAAGGGTTT-GGGT
1 TTTAAGTTAAGGGTTAG-GGTTTTAAGTTAAAGGTTTAGGGTTTTTAAG-TTAAGGGTTTAGGGT
26339487 T
64 T
* * * *
26339488 TTAAAGTTAAGGGTTAGGGCTTTTAAGTTAAAAGTTTAAGGTTTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * ** *
26339553 TTTAATTTAAAGGTTTAAGATTTTTAAGTTAAGAGG-TTAGGGTTTTAAAGTTAAGGG-TTAGGG
1 TTTAAGTT-AAGGGTT-AGGGTTTTAAGTTAA-AGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGG
26339616 TT
63 TT
* * * * *
26339618 TTTAAGCTAAAGGTTTAGGGTTTTTAATTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGT
1 TTTAAG-TTAAGGGTTAGGG-TTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26339682 T
64 T
* * * *
26339683 TTTAATTTAAGGGTTTAAGGTTTTTAA-TTTAAGAATTTAGGGTTTTTAAGTTAAAGGG-TTAGG
1 TTTAAGTTAAGGG-TT-AGGGTTTTAAGTTAAAG-GTTTAGGGTTTTTAAGTT-AAGGGTTTAGG
26339746 GTT
62 GTT
* * *
26339749 TTTAAGTTAAAGGTTTAGGGTTTTTAATTTAAGGGTTTAGGG-TTTTAAGTTAAGGG-TTAGGGT
1 TTTAAGTT-AAGGGTTAGGG-TTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26339812 T
64 T
* * * *
26339813 TTTAATTTAAGGGTTTAGGGTTTTTAAGTTAAAGGGTTATGGTTTTTAAGTTAAGGGTTTATGGT
1 TTTAAGTTAAGGG-TTAGGG-TTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26339878 T
64 T
* * *
26339879 TTTAAGTTAAGGGTTAGGGGTTTTAAGTTAAAGGTTTTGGGTTTTTAATTTATGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTA-GGGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * **
26339944 TTTAATTTAAGGGTTTAAGGTTTTTAAGTTAAGGGGTTAGGGTTTCAAAGTTAA--GTATTAGGG
1 TTTAAGTTAAGGG-TT-AGGGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGT-TTAGGG
26340007 -T
63 TT
* * * *
26340008 TTTAAGTTAAAGGTTTAGGGTATTTAATTTAAGGGTTTAGGGTTTTTAAGTTAAGGGGTTATGGG
1 TTTAAGTT-AAGGGTTAGGGT-TTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTA-GGG
26340073 -T
63 TT
*** * * *
26340074 TTTAAGTTAAGGGTTTATCATTTCTAAGTTAAAGGTTTATGGTTTTTAAGTTAAGGGGTTAAGGT
1 TTTAAGTTAAGGG-TTAGGGTTT-TAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26340139 T
64 T
* * *
26340140 TTTAAGTTAAGGGGTTAGGGTTTTTAATTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAAGGT
1 TTTAAGTTAA-GGGTTAGGG-TTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26340204 T
64 T
* * * *
26340205 TTTAGGTTAAGGGTTTATGG-TTT-A--T---GGTTTATGGTTTTTAAATTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
26340263 TTTAAGTTAAGAGTTTTGGGGTTTTAAGTTAAAGGGTTAGGGTTTTTAAGTTAAGGGTTTTGGG-
1 TTTAAGTTAAG-G-GTTAGGGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
26340327 T
64 T
* * * * *
26340328 TTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGTTTTAAGGTT
1 TTTAAGTTAAGGGTTAGGG-TTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
26340393 TTTAATTTAAGGGTTAGGGTTTTCAAGTT-AAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTT-AAGTTAAAGGTTTAGGGTT
26340435 AGGGTTAAGG
Statistics
Matches: 950, Mismatches: 137, Indels: 107
0.80 0.11 0.09
Matches are distributed among these distances:
57 22 0.02
58 17 0.02
59 5 0.01
60 4 0.00
61 1 0.00
62 1 0.00
63 38 0.04
64 241 0.25
65 344 0.36
66 258 0.27
67 19 0.02
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (64 bp):
TTTAAGTTAAGGGTTAGGGTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:26340260 original size:7 final size:7
Alignment explanation
Indices: 26340216--26340241 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26340206 TTAGGTTAAG
26340216 GGTTTAT
1 GGTTTAT
26340223 GGTTTAT
1 GGTTTAT
26340230 GGTTTAT
1 GGTTTAT
26340237 GGTTT
1 GGTTT
26340242 TTAAATTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.31, T:0.58
Consensus pattern (7 bp):
GGTTTAT
Found at i:26341036 original size:18 final size:18
Alignment explanation
Indices: 26341010--26341052 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
26341000 GGACTCGAAA
* * *
26341010 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
26341028 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
26341046 AGGATAC
1 AGGATAC
26341053 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:26341701 original size:20 final size:20
Alignment explanation
Indices: 26341663--26341701 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26341653 TTTTATTTTT
*
26341663 TAAAATCTACATAATAATTG
1 TAAAATCTACATAAAAATTG
26341683 TAAAATCTA-ATATAAAATT
1 TAAAATCTACATA-AAAATT
26341702 TACCTCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (20 bp):
TAAAATCTACATAAAAATTG
Found at i:26342615 original size:13 final size:13
Alignment explanation
Indices: 26342597--26342623 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26342587 TTTACGGTTT
26342597 AAAAAATTTAAAA
1 AAAAAATTTAAAA
26342610 AAAAAATTTAAAA
1 AAAAAATTTAAAA
26342623 A
1 A
26342624 TTATTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAAAATTTAAAA
Found at i:26342687 original size:51 final size:50
Alignment explanation
Indices: 26342632--26342731 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 50
26342622 AATTATTTAA
26342632 AAATAGGGATTTAAGAGAAATTT-AATAGGAACTTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTGAA-AGG-ACTTGAGAGCAAATTGAGATT
* * *
26342683 AAATATGGATTTGAGAGAAATTTGGAAAGGATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTT-GAAAGGACTTGAGAGCAAATTGAGA
26342732 GGAAATTTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
51 39 0.89
52 3 0.07
53 2 0.05
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.27
Consensus pattern (50 bp):
AAATAGGGATTTAAGAGAAATTTGAAAGGACTTGAGAGCAAATTGAGATT
Found at i:26342705 original size:11 final size:11
Alignment explanation
Indices: 26342691--26342767 Score: 65
Period size: 11 Copynumber: 6.9 Consensus size: 11
26342681 TTAAATATGG
26342691 ATTTGAGAGAA
1 ATTTGAGAGAA
26342702 ATTTG-GA-AA
1 ATTTGAGAGAA
26342711 GGATTTGAGAGCAA
1 --ATTTGAGAG-AA
26342725 A-TTGAGAGGAA
1 ATTTGAGA-GAA
26342736 ATTT-AGAGGAA
1 ATTTGAGA-GAA
26342747 A-TTGAGAGGAA
1 ATTTGAGA-GAA
26342758 ATTTGAGAGA
1 ATTTGAGAGA
26342768 GGATTAGTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 18
0.76 0.00 0.24
Matches are distributed among these distances:
9 2 0.04
10 4 0.07
11 37 0.65
12 12 0.21
14 2 0.04
ACGTcount: A:0.43, C:0.01, G:0.31, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:26342748 original size:22 final size:23
Alignment explanation
Indices: 26342713--26342766 Score: 92
Period size: 22 Copynumber: 2.4 Consensus size: 23
26342703 TTTGGAAAGG
26342713 ATTTGAGAGCAAATTGAGAGGAA
1 ATTTGAGAGCAAATTGAGAGGAA
*
26342736 ATTT-AGAGGAAATTGAGAGGAA
1 ATTTGAGAGCAAATTGAGAGGAA
26342758 ATTTGAGAG
1 ATTTGAGAG
26342767 AGGATTAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.43, C:0.02, G:0.31, T:0.24
Consensus pattern (23 bp):
ATTTGAGAGCAAATTGAGAGGAA
Found at i:26344238 original size:41 final size:41
Alignment explanation
Indices: 26344181--26344295 Score: 140
Period size: 41 Copynumber: 2.8 Consensus size: 41
26344171 TTCAGACTNA
* * *
26344181 CAGACTTTACGTCTAGCAGGCTTGATGCTGGTGAAATAATT
1 CAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAATT
* *
26344222 CAGACTTTACGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAATT
* * * * *
26344263 CGGACTATAGGTCTAGCAGGCTAAAAGCCGGTG
1 CAGACTTTACGTCTAGCAGGCTTAATGCCGGTG
26344296 TACTGAATCA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (41 bp):
CAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAATT
Found at i:26349479 original size:3 final size:3
Alignment explanation
Indices: 26349466--26349495 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
26349456 GTTTTTGTTT
26349466 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26349496 GTAAGAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:26353034 original size:20 final size:20
Alignment explanation
Indices: 26352994--26353034 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26352984 GCGGATGAAG
**
26352994 AAAGCTTGGCATGTGACAAT
1 AAAGCTTGGCATGCAACAAT
*
26353014 AAAGCTTGGCATGCAATAAT
1 AAAGCTTGGCATGCAACAAT
26353034 A
1 A
26353035 GAGGTGTGGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (20 bp):
AAAGCTTGGCATGCAACAAT
Found at i:26355962 original size:45 final size:44
Alignment explanation
Indices: 26355907--26356030 Score: 140
Period size: 45 Copynumber: 2.8 Consensus size: 44
26355897 GCTACACACC
* * *
26355907 TAAATTGAGTATGGCCATAGCTGAATGACGCTATAACATCATCA
1 TAAAATGAGTATGACCATAGCTGAAAGACGCTATAACATCATCA
* * ** *
26355951 TTAAAATGAGTATGACCATAGCTGAAAGATGATATAGTATCATGA
1 -TAAAATGAGTATGACCATAGCTGAAAGACGCTATAACATCATCA
* *
26355996 TAGAAATGAGTAAGACCATGGCTGAAAGACGCTAT
1 TA-AAATGAGTATGACCATAGCTGAAAGACGCTAT
26356031 GGCATCACAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 2 0.03
45 64 0.97
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.26
Consensus pattern (44 bp):
TAAAATGAGTATGACCATAGCTGAAAGACGCTATAACATCATCA
Found at i:26360402 original size:24 final size:24
Alignment explanation
Indices: 26360357--26360402 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26360347 CCGCAACAGT
* *
26360357 TTGAGTAGGTGCTTCGGTAGCAGC
1 TTGAGTAGGTCCTTCGGCAGCAGC
26360381 TTGAGTAGGCTCCTT-GGCAGCA
1 TTGAGTAGG-TCCTTCGGCAGCA
26360403 TTAGCAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.17, C:0.20, G:0.35, T:0.28
Consensus pattern (24 bp):
TTGAGTAGGTCCTTCGGCAGCAGC
Found at i:26361476 original size:15 final size:15
Alignment explanation
Indices: 26361456--26361495 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
26361446 TGAGTATTCG
*
26361456 ATTGAGTCAAGGCGA
1 ATTGAGTCAAGGCAA
26361471 ATTGAGTCAAGGCAA
1 ATTGAGTCAAGGCAA
26361486 ATTGAGTCAA
1 ATTGAGTCAA
26361496 AAAACTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.23
Consensus pattern (15 bp):
ATTGAGTCAAGGCAA
Found at i:26366179 original size:17 final size:18
Alignment explanation
Indices: 26366157--26366197 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
26366147 TGGGAGATGG
26366157 CAATTTTTCTAT-CACTT
1 CAATTTTTCTATCCACTT
26366174 CAATTTTTTCTATCCACTT
1 CAA-TTTTTCTATCCACTT
26366193 CAATT
1 CAATT
26366198 CCTTTCTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
19 8 0.36
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (18 bp):
CAATTTTTCTATCCACTT
Found at i:26366183 original size:18 final size:19
Alignment explanation
Indices: 26366160--26366197 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26366150 GAGATGGCAA
26366160 TTTTTCTAT-CACTTCAAT
1 TTTTTCTATCCACTTCAAT
26366178 TTTTTCTATCCACTTCAAT
1 TTTTTCTATCCACTTCAAT
26366197 T
1 T
26366198 CCTTTCTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTTCTATCCACTTCAAT
Found at i:26369678 original size:14 final size:15
Alignment explanation
Indices: 26369653--26369689 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
26369643 CCTGTAGAAA
26369653 TTAAATTAAACTAAG
1 TTAAATTAAACTAAG
26369668 TTAAA-TAAACTAA-
1 TTAAATTAAACTAAG
*
26369681 TGAAATTAA
1 TTAAATTAA
26369690 GTAAAATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 11 0.55
15 5 0.25
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (15 bp):
TTAAATTAAACTAAG
Found at i:26376649 original size:50 final size:50
Alignment explanation
Indices: 26376593--26376691 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
26376583 TAGAGCTGGT
26376593 AGTAACACAATACATAACAATTCCAATCAAGCAGCTAAGAAGCACATCTA
1 AGTAACACAATACATAACAATTCCAATCAAGCAGCTAAGAAGCACATCTA
*
26376643 AGTAACACAATACATAACAATTCCAATCAAGCGGCTAAGAAGCACATCT
1 AGTAACACAATACATAACAATTCCAATCAAGCAGCTAAGAAGCACATCT
26376692 TCCATAAAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.46, C:0.24, G:0.11, T:0.18
Consensus pattern (50 bp):
AGTAACACAATACATAACAATTCCAATCAAGCAGCTAAGAAGCACATCTA
Found at i:26389151 original size:79 final size:79
Alignment explanation
Indices: 26388984--26389347 Score: 457
Period size: 79 Copynumber: 4.6 Consensus size: 79
26388974 AATTAAAAGT
* * * ** * *
26388984 AAATAAAATCCATTTCGGGATTTATTCCCACTGTTCAATGAATTTTATTCCATTATTTTGATTTT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCATTTAACG-ATTTTATTCCA-TATTTTG-TTTT
*
26389049 ATTTCCAAAAATGAGTA
63 ATTTCCAAAAACGAGTA
*
26389066 AAATAAAATCCGTTTCGGGATTGATTCCCGCCATTTAACGATTTTTTTCCATATTTTGTTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCATTTAACGATTTTATTCCATATTTTGTTTTATT
26389131 TCCAAAAACGAGTA
66 TCCAAAAACGAGTA
* ** * *
26389145 AAATAAAATCTGTTTCAAGATTGA-TCCCTGCCATTTAACGATTTTATTCTATATTTTGCTTTAT
1 AAATAAAATCCGTTTCGGGATTGATTCCC-GCCATTTAACGATTTTATTCCATATTTTGTTTTAT
26389209 TTCCAAAAACGAGTA
65 TTCCAAAAACGAGTA
* * * *
26389224 AAATAAAATCCATTTCGGGATTGATTCCAGCCGTTTAACGATTTTATT-CA-AATTT-TTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCATTTAACGATTTTATTCCATATTTTGTTTTATT
26389286 TCCAAAAACGAGTA
66 TCCAAAAACGAGTA
* * * * *
26389300 AAATAAAATCTGTTTCGGGATTGATTCCCGTCGTTCAACGAATTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCATTTAACGATTTTATT
26389348 AAATTTTGAT
Statistics
Matches: 250, Mismatches: 30, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
76 62 0.25
77 4 0.02
78 5 0.02
79 126 0.50
80 10 0.04
81 10 0.04
82 33 0.13
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (79 bp):
AAATAAAATCCGTTTCGGGATTGATTCCCGCCATTTAACGATTTTATTCCATATTTTGTTTTATT
TCCAAAAACGAGTA
Found at i:26393879 original size:31 final size:31
Alignment explanation
Indices: 26393843--26393904 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
26393833 AGATAATTTT
26393843 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
26393874 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
26393905 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Done.