Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 102 of 187
Found at i:29844280 original size:14 final size:14
Alignment explanation
Indices: 29844243--29844293 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
29844233 TGGAAAATAT
*
29844243 AAATA-AAAATAAA
1 AAATATAAATTAAA
*
29844256 AAATAT--TTTAAA
1 AAATATAAATTAAA
29844268 AAATATAAATTAAA
1 AAATATAAATTAAA
29844282 AAATATATAATT
1 AAATATA-AATT
29844294 TTCTTAGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 10 0.32
13 5 0.16
14 12 0.39
15 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATATAAATTAAA
Found at i:29845021 original size:26 final size:26
Alignment explanation
Indices: 29844992--29845044 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29844982 GTGACAAAAT
* * * *
29844992 AAAAGTTAGGTACTATCTAGGTCCAA
1 AAAAATTAGGTACCAACTAGGTACAA
29845018 AAAAATTAGGTACCAACTAGGTACAA
1 AAAAATTAGGTACCAACTAGGTACAA
29845044 A
1 A
29845045 TGGACAAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (26 bp):
AAAAATTAGGTACCAACTAGGTACAA
Found at i:29845238 original size:3 final size:3
Alignment explanation
Indices: 29845232--29845410 Score: 358
Period size: 3 Copynumber: 59.7 Consensus size: 3
29845222 CATGGCATAA
29845232 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
29845280 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
29845328 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
29845376 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
29845411 ATAATAATAA
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 176 1.00
ACGTcount: A:0.34, C:0.00, G:0.33, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:29845738 original size:12 final size:13
Alignment explanation
Indices: 29845710--29845744 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
29845700 TCACACTATT
*
29845710 TTCTTCATCTTTC
1 TTCTTCATCTGTC
29845723 TTCTTCA-CTGTC
1 TTCTTCATCTGTC
29845735 TTCTTCATCT
1 TTCTTCATCT
29845745 CCCATTTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.09, C:0.31, G:0.03, T:0.57
Consensus pattern (13 bp):
TTCTTCATCTGTC
Found at i:29848120 original size:56 final size:56
Alignment explanation
Indices: 29848034--29848146 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
29848024 GAATTATAAG
* * *
29848034 TCAGAATGTGCTATAAATGTCTATATAATTTTTAGTTCTCACACCCTTAAACTTAA
1 TCAGAATGTGCTATAAATGTCTATATAATTTTGAGTTATCACACCCCTAAACTTAA
*
29848090 TCAGAATGTGTTATAAATGTCTATATAATTTTGAGTTATCACACCCCTAAACTTAA
1 TCAGAATGTGCTATAAATGTCTATATAATTTTGAGTTATCACACCCCTAAACTTAA
29848146 T
1 T
29848147 TCATTGTTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (56 bp):
TCAGAATGTGCTATAAATGTCTATATAATTTTGAGTTATCACACCCCTAAACTTAA
Found at i:29851416 original size:13 final size:13
Alignment explanation
Indices: 29851373--29851430 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
29851363 ATATATGTAA
29851373 ATGAAATGGTTAT
1 ATGAAATGGTTAT
* * *
29851386 ATGGAATGATTAC
1 ATGAAATGGTTAT
29851399 ATGAAATGGTTAT
1 ATGAAATGGTTAT
*
29851412 GTG-AATCGGTTAT
1 ATGAAAT-GGTTAT
*
29851425 GTGAAA
1 ATGAAA
29851431 ATATATGTGT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
12 3 0.08
13 31 0.86
14 2 0.06
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.34
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:29857236 original size:29 final size:29
Alignment explanation
Indices: 29857194--29857254 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
29857184 AGACAAAACC
29857194 TCATTTGCACTTTCAAAAATTCGTAATTT
1 TCATTTGCACTTTCAAAAATTCGTAATTT
29857223 TCATTTGCACTTTCAAAAATTCGTAATTT
1 TCATTTGCACTTTCAAAAATTCGTAATTT
29857252 TCA
1 TCA
29857255 AGTAAGTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.31, C:0.18, G:0.07, T:0.44
Consensus pattern (29 bp):
TCATTTGCACTTTCAAAAATTCGTAATTT
Found at i:29869012 original size:9 final size:10
Alignment explanation
Indices: 29868987--29869020 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
29868977 TCATATACTT
29868987 TATAATTAAA
1 TATAATTAAA
29868997 TATAATTAAA
1 TATAATTAAA
*
29869007 -ATAATTATA
1 TATAATTAAA
29869016 TATAA
1 TATAA
29869021 ACTATTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
TATAATTAAA
Found at i:29878961 original size:51 final size:51
Alignment explanation
Indices: 29878864--29878967 Score: 120
Period size: 51 Copynumber: 2.0 Consensus size: 51
29878854 ATATAATAAT
* * * * * *
29878864 AAATTTAGCCCTCAAATTTTACATATTCTATCGATTTAGTCATAATTTTAA
1 AAATTTAACCCTCAAAATTTACAAATGCTATCAATTTAGTCATAATTCTAA
* *
29878915 AAATTTAACCCTCAAAATTTACAAATGCTCTCAATTT-GATCCTAATTCTAA
1 AAATTTAACCCTCAAAATTTACAAATGCTATCAATTTAG-TCATAATTCTAA
29878966 AA
1 AA
29878968 TTTTTAAAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
50 1 0.02
51 43 0.98
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (51 bp):
AAATTTAACCCTCAAAATTTACAAATGCTATCAATTTAGTCATAATTCTAA
Found at i:29879108 original size:27 final size:28
Alignment explanation
Indices: 29879084--29879159 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
29879074 AATTTTTTTA
*
29879084 AAATATAAAAATTAAAATAAATTTTATAT
1 AAATAT-AAAATAAAAATAAATTTTATAT
* * *
29879113 TAATATTAAATAAAAATAAATTTAATACT
1 AAATATAAAATAAAAATAAATTTTATA-T
*
29879142 -AATATTAAATAAAAATAA
1 AAATATAAAATAAAAATAA
29879160 TGATTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 36 0.86
29 6 0.14
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (28 bp):
AAATATAAAATAAAAATAAATTTTATAT
Found at i:29879176 original size:28 final size:28
Alignment explanation
Indices: 29879092--29879159 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
29879082 TAAAATATAA
* * *
29879092 AAATTAAAATAAATTTTATATTAATATT
1 AAATAAAAATAAATTTAATACTAATATT
29879120 AAATAAAAATAAATTTAATACTAATATT
1 AAATAAAAATAAATTTAATACTAATATT
29879148 AAATAAAAATAA
1 AAATAAAAATAA
29879160 TGATTTTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (28 bp):
AAATAAAAATAAATTTAATACTAATATT
Found at i:29882774 original size:31 final size:31
Alignment explanation
Indices: 29882739--29882802 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
29882729 TTTCCTATAG
* *
29882739 TTAGGGTTTTCAATATTTTTAAGTTTAGGGT
1 TTAGGATTTTCAATATTTTTAAGTTTAAGGT
*
29882770 TTAGGATTTTTAATATTTTTAAGTTTAAGGT
1 TTAGGATTTTCAATATTTTTAAGTTTAAGGT
29882801 TT
1 TT
29882803 TTTAAAAGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.02, G:0.19, T:0.55
Consensus pattern (31 bp):
TTAGGATTTTCAATATTTTTAAGTTTAAGGT
Found at i:29884716 original size:20 final size:20
Alignment explanation
Indices: 29884691--29884731 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
29884681 CCCCTATAAG
*
29884691 TATGACCTATTTGATATGAA
1 TATGACATATTTGATATGAA
*
29884711 TATGACATATTTGATGTGAA
1 TATGACATATTTGATATGAA
29884731 T
1 T
29884732 GGCGAGCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (20 bp):
TATGACATATTTGATATGAA
Found at i:29885316 original size:18 final size:18
Alignment explanation
Indices: 29885274--29885323 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
29885264 AGGTGTAGAT
*
29885274 GAGGAAAAAGATGCGATC
1 GAGGAAGAAGATGCGATC
* *
29885292 GAGGAAGAAGATGTGGTC
1 GAGGAAGAAGATGCGATC
*
29885310 GAGGAAGAATATGC
1 GAGGAAGAAGATGC
29885324 AAGTGAGGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.38, T:0.14
Consensus pattern (18 bp):
GAGGAAGAAGATGCGATC
Found at i:29893236 original size:25 final size:25
Alignment explanation
Indices: 29893198--29893264 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
29893188 ACAAATAAAA
29893198 ACCCAAAATC-AGCCCAACACCCCAC
1 ACCCAAAA-CAAGCCCAACACCCCAC
*
29893223 ACCCAAAACAAGCCCAACACCTCAC
1 ACCCAAAACAAGCCCAACACCCCAC
29893248 ACCCAAAACAAGCCCAA
1 ACCCAAAACAAGCCCAA
29893265 GTTAACCCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.45, C:0.48, G:0.04, T:0.03
Consensus pattern (25 bp):
ACCCAAAACAAGCCCAACACCCCAC
Found at i:29898861 original size:24 final size:23
Alignment explanation
Indices: 29898795--29898881 Score: 70
Period size: 24 Copynumber: 3.7 Consensus size: 23
29898785 TGGTTATTCG
* *
29898795 GAGCTTCTTGATTAATGGCTCTTC
1 GAGCTTCCTGATT-ATGGCTCTAC
* *
29898819 GGAGCTACC-CATTATTGGCTCGTAC
1 -GAGCTTCCTGATTA-TGGCTC-TAC
*
29898844 GAGCTTCCTGATTATGGCTCTTAT
1 GAGCTTCCTGATTATGGCTC-TAC
29898868 GAGCTTCCTG-TTAT
1 GAGCTTCCTGATTAT
29898882 ACAGCCCGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 5 0.10
24 34 0.67
25 12 0.24
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (23 bp):
GAGCTTCCTGATTATGGCTCTAC
Found at i:29900684 original size:20 final size:20
Alignment explanation
Indices: 29900648--29900686 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
29900638 TTATAATGAC
*
29900648 AAAAAAATATTTTAATTTAT
1 AAAAAAATATTTAAATTTAT
29900668 AAAAAAACT-TTTAAATTTA
1 AAAAAAA-TATTTAAATTTA
29900687 ACTTGATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAAAATATTTAAATTTAT
Found at i:29901534 original size:18 final size:18
Alignment explanation
Indices: 29901508--29901551 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
29901498 TTAAAATTTG
*
29901508 AAAAGAAGTATAAGCATA
1 AAAAAAAGTATAAGCATA
*
29901526 AAAAAAAGTGTAAGCATA
1 AAAAAAAGTATAAGCATA
29901544 AAATAAAA
1 AAA-AAAA
29901552 AATAATTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.66, C:0.05, G:0.14, T:0.16
Consensus pattern (18 bp):
AAAAAAAGTATAAGCATA
Found at i:29905183 original size:69 final size:69
Alignment explanation
Indices: 29905099--29905239 Score: 203
Period size: 69 Copynumber: 2.0 Consensus size: 69
29905089 TTCCCTTCCT
* *
29905099 GAGGATTCCATCACAAAGAAGGTCTGTTTCAAGGAATC-GAACGTGAACCTTGAAGATGTGATGG
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCAG-ACGTGAACCTTGAAGATGTAATGG
*
29905163 TTGTG
65 TCGTG
* * **
29905168 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGT
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCAGACGTGAACCTTGAAGATGTAATGGT
29905233 CGTG
66 CGTG
29905237 GAG
1 GAG
29905240 TCATCACCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
69 63 0.98
70 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (69 bp):
GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCAGACGTGAACCTTGAAGATGTAATGGT
CGTG
Found at i:29905588 original size:69 final size:69
Alignment explanation
Indices: 29905504--29905644 Score: 210
Period size: 69 Copynumber: 2.0 Consensus size: 69
29905494 TTCTCTTACT
* *
29905504 GAGGATTCCATCACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTGATGGT
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTAATGGT
*
29905569 TGTG
66 CGTG
* * * * *
29905573 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGACTCGGATGTGATTCTTGAAGATGTAATGGT
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTAATGGT
29905638 CGTG
66 CGTG
29905642 GAG
1 GAG
29905645 TCATCACCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.27
Consensus pattern (69 bp):
GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTAATGGT
CGTG
Found at i:29905682 original size:405 final size:405
Alignment explanation
Indices: 29904931--29905745 Score: 1513
Period size: 405 Copynumber: 2.0 Consensus size: 405
29904921 ATGTCAACAA
29904931 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
1 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
* * *
29904996 TGGCTCACTTGGGTGTTAAATTCCGTTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
66 TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
* *
29905061 CTAATGTGGACAATAATGGAGAAGGTGATTCCCTTCCTGAGGATTCCATCACAAAGAAGGTCTGT
131 CTAATGTGGACAATAATGGAGAAAGTGATTCCCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
*
29905126 TTCAAGGAATCGAACGTGAACCTTGAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
196 TTCAAGGAATCGAACGTGAACCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
29905191 CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
261 CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
* * *
29905256 CTTTTTCTTGAAAAGATATGCTAGTGGGGAAGGATACTCCTGTGCAGAATAATACAAATAATGGG
326 CTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
29905321 CACTTCCTTGTTGAT
391 CACTTCCTTGTTGAT
29905336 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
1 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
29905401 TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
66 TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
*
29905466 CTAATGTGGACAATAATGGAGAAAGTGATTCTCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
131 CTAATGTGGACAATAATGGAGAAAGTGATTCCCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
*
29905531 TTCAAGGAATCGAACGTGAATCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
196 TTCAAGGAATCGAACGTGAACCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
*
29905596 CTGTTTCAAGGACTCGGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
261 CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
*
29905661 TTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
326 CTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
29905726 CACTTCCTTGTTGAT
391 CACTTCCTTGTTGAT
29905741 AATTT
1 AATTT
29905746 TTCCCTCACT
Statistics
Matches: 397, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
405 397 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (405 bp):
AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
CTAATGTGGACAATAATGGAGAAAGTGATTCCCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
TTCAAGGAATCGAACGTGAACCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
CTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
CACTTCCTTGTTGAT
Found at i:29911865 original size:12 final size:12
Alignment explanation
Indices: 29911848--29911894 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 12
29911838 TTTAATTTTC
29911848 AAATTTTAAAAA
1 AAATTTTAAAAA
29911860 AAA-TTTAAAAA
1 AAATTTTAAAAA
*
29911871 AGATTTT-AAAA
1 AAATTTTAAAAA
**
29911882 TTATTTTAAAAA
1 AAATTTTAAAAA
29911894 A
1 A
29911895 TTATAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (12 bp):
AAATTTTAAAAA
Found at i:29911892 original size:21 final size:22
Alignment explanation
Indices: 29911848--29911914 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
29911838 TTTAATTTTC
* **
29911848 AAATTTTAAAAAAAATTTAAAA
1 AAATTATAAAAATTATTTAAAA
* *
29911870 AAGATT-TTAAAATTATTTTAAA
1 AA-ATTATAAAAATTATTTAAAA
29911892 AAATTATAAAAATTATTTAAAA
1 AAATTATAAAAATTATTTAAAA
29911914 A
1 A
29911915 TATAAAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 3 0.08
22 31 0.84
23 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (22 bp):
AAATTATAAAAATTATTTAAAA
Found at i:29911915 original size:11 final size:11
Alignment explanation
Indices: 29911852--29911915 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
29911842 ATTTTCAAAT
**
29911852 TTTAAAAAAAA
1 TTTAAAAATTA
**
29911863 TTTAAAAAAGA
1 TTTAAAAATTA
*
29911874 TTTTAAAATTA
1 TTTAAAAATTA
29911885 TTTTAAAAA--A
1 -TTTAAAAATTA
29911895 TTATAAAAATTA
1 TT-TAAAAATTA
29911907 TTTAAAAAT
1 TTTAAAAAT
29911916 ATAAAATTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.05
10 7 0.16
11 25 0.57
12 10 0.23
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
TTTAAAAATTA
Found at i:29912958 original size:20 final size:20
Alignment explanation
Indices: 29912933--29912970 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
29912923 TGGGAGAGGA
*
29912933 TTTTTTAAAAAGGTTTTATT
1 TTTTTTAAAAAGGGTTTATT
29912953 TTTTTTAAAAAGGGTTTA
1 TTTTTTAAAAAGGGTTTA
29912971 AAATGATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (20 bp):
TTTTTTAAAAAGGGTTTATT
Found at i:29914433 original size:25 final size:25
Alignment explanation
Indices: 29914406--29914453 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
29914396 ATTTAATTAT
*
29914406 TTTTA-ATCTATATATATATATTTC
1 TTTTATATCTAAATATATATATTTC
*
29914430 TTTTATATGTAAATATATATATTT
1 TTTTATATCTAAATATATATATTT
29914454 TTAATGAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTTATATCTAAATATATATATTTC
Found at i:29916585 original size:18 final size:17
Alignment explanation
Indices: 29916555--29916588 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
29916545 ATAATTGTAA
*
29916555 TTTAAATTTTAATTATT
1 TTTAAATTGTAATTATT
29916572 TTTAAATATGTAATTAT
1 TTTAAAT-TGTAATTAT
29916589 CACAATTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTAAATTGTAATTATT
Found at i:29916976 original size:15 final size:15
Alignment explanation
Indices: 29916956--29916988 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
29916946 TACCCGTTTC
29916956 ATTAAT-TTTTATATA
1 ATTAATATTTTA-ATA
29916971 ATTAATATTTTAATA
1 ATTAATATTTTAATA
29916986 ATT
1 ATT
29916989 CAATCGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTAATATTTTAATA
Found at i:29923667 original size:41 final size:40
Alignment explanation
Indices: 29923538--29923680 Score: 135
Period size: 41 Copynumber: 3.5 Consensus size: 40
29923528 AATAATAATG
* * * *
29923538 AATTGCAAATACGTACCCTTCTTTGTACTTCGGTACCCTT
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTT
* * * *
29923578 GAAATAG-ACATACGTGCCTCTATTTGTAATTCGGTACCCCTG
1 --AATTGCACATACGTGCCCCTATTTGTACTTCGGTA-CCCTT
* * *
29923620 AATTGCACATATGTGCCCCTATTTGTACTTTGGTACCATT
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTT
*
29923660 AACTTGCACATACATGCCCCT
1 AA-TTGCACATACGTGCCCCT
29923681 GTTTAGACTT
Statistics
Matches: 81, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
40 9 0.11
41 64 0.79
42 8 0.10
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (40 bp):
AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTT
Found at i:29930006 original size:11 final size:10
Alignment explanation
Indices: 29929990--29930032 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
29929980 CATTAAAATT
*
29929990 TAAAATAAAT
1 TAAAATAAAA
29930000 TATAAATAAAA
1 TA-AAATAAAA
29930011 TAAAATAAAA
1 TAAAATAAAA
29930021 TAAAAATAAAA
1 T-AAAATAAAA
29930032 T
1 T
29930033 TCAATTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 11 0.37
11 19 0.63
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:29930011 original size:16 final size:15
Alignment explanation
Indices: 29929990--29930032 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
29929980 CATTAAAATT
*
29929990 TAAAATAAATTATAAA
1 TAAAATAAAATA-AAA
29930006 TAAAATAAAATAAAA
1 TAAAATAAAATAAAA
29930021 TAAAAATAAAAT
1 T-AAAATAAAAT
29930033 TCAATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAATAAAATAAAA
Found at i:29930016 original size:21 final size:21
Alignment explanation
Indices: 29929990--29930032 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
29929980 CATTAAAATT
* *
29929990 TAAAATAAATTATAAATAAAA
1 TAAAATAAAATAAAAATAAAA
29930011 TAAAATAAAATAAAAATAAAA
1 TAAAATAAAATAAAAATAAAA
29930032 T
1 T
29930033 TCAATTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAAATAAAATAAAAATAAAA
Found at i:29930028 original size:6 final size:5
Alignment explanation
Indices: 29929990--29930032 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
29929980 CATTAAAATT
*
29929990 TAAAA TAAAT TATAAA TAAAA TAAAA TAAAA TAAAAA TAAAA T
1 TAAAA TAAAA TA-AAA TAAAA TAAAA TAAAA T-AAAA TAAAA T
29930033 TCAATTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (5 bp):
TAAAA
Found at i:29937705 original size:25 final size:25
Alignment explanation
Indices: 29937672--29937722 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
29937662 TCATATATCT
29937672 TCTTACTATATCAATATCCATTTCA
1 TCTTACTATATCAATATCCATTTCA
29937697 TCTTACTATATCAATATCCATTTCA
1 TCTTACTATATCAATATCCATTTCA
29937722 T
1 T
29937723 GCATTTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.45
Consensus pattern (25 bp):
TCTTACTATATCAATATCCATTTCA
Found at i:29938124 original size:23 final size:22
Alignment explanation
Indices: 29938073--29938153 Score: 103
Period size: 23 Copynumber: 3.7 Consensus size: 22
29938063 AATATACGAT
29938073 ACAT-AAGTGCCTGAAA-CGAC
1 ACATAAAGTGCCTGAAATCGAC
**
29938093 ACAGGAAGTGCCTGAAATTCGAC
1 ACATAAAGTGCCTGAAA-TCGAC
29938116 ACATAAAGTGCCTGAAATACGAC
1 ACATAAAGTGCCTGAAAT-CGAC
*
29938139 ACATAAAGTGTCTGA
1 ACATAAAGTGCCTGA
29938154 TCAGCAAAGC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
20 3 0.06
21 12 0.23
22 1 0.02
23 37 0.70
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (22 bp):
ACATAAAGTGCCTGAAATCGAC
Found at i:29946984 original size:6 final size:6
Alignment explanation
Indices: 29946973--29947012 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
29946963 ACTCATATCA
*
29946973 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCGT TTTC
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTC
29947013 CAATAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.12, C:0.17, G:0.03, T:0.68
Consensus pattern (6 bp):
TTTCAT
Found at i:29956822 original size:31 final size:31
Alignment explanation
Indices: 29956785--29956861 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
29956775 TAATCTTTTC
* * * *
29956785 AATAAAATGAGATAAAAATAATAGTTTATAT
1 AATAAAATGAGAAAAAAAAAAGAGTTTAAAT
*
29956816 ACTAAAATGAGAAAAAAAAAAGAGTTTAAAT
1 AATAAAATGAGAAAAAAAAAAGAGTTTAAAT
*
29956847 AATAAAGTGAAGAAA
1 AATAAAATG-AGAAA
29956862 CCGTTATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 33 0.87
32 5 0.13
ACGTcount: A:0.62, C:0.01, G:0.13, T:0.23
Consensus pattern (31 bp):
AATAAAATGAGAAAAAAAAAAGAGTTTAAAT
Found at i:29961475 original size:143 final size:143
Alignment explanation
Indices: 29961211--29961496 Score: 500
Period size: 143 Copynumber: 2.0 Consensus size: 143
29961201 AAGAAATTCG
29961211 TTCATATGATCATTTCTGCAAAAGAAATTATAATCCAAATGTTGCACATCAAAGTTACCAAAAAA
1 TTCATATGATCATTTCTGCAAAAGAAATTATAATCCAAATGTTGCACATCAAAGTTACCAAAAAA
* *
29961276 CAACCTTCCAATTCTCCATTTGATAAGTTGCACAGTAATAGGTCTCTGTTCTATGCTAAAAGCAA
66 CAACCTTCCAATTCTCCATTTGATAAGTTGCACAGTAATAGGTCTCTGCTCCATGCTAAAAGCAA
*
29961341 TCCAATTCCTTCA
131 GCCAATTCCTTCA
*
29961354 TTCATATGATCATTTTTGCAAAAGAAATTATAATCCAAATGTTGCACATCAAAGTTACCAAAAAA
1 TTCATATGATCATTTCTGCAAAAGAAATTATAATCCAAATGTTGCACATCAAAGTTACCAAAAAA
* * *
29961419 CAACCTTCCAATTCTCCATTTGATAAGTTGCATAGTTATGGGTCTCTGCTCCATGCTAAAAGCAA
66 CAACCTTCCAATTCTCCATTTGATAAGTTGCACAGTAATAGGTCTCTGCTCCATGCTAAAAGCAA
*
29961484 GCTAATTCCTTCA
131 GCCAATTCCTTCA
29961497 GAATACTTGA
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
143 135 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (143 bp):
TTCATATGATCATTTCTGCAAAAGAAATTATAATCCAAATGTTGCACATCAAAGTTACCAAAAAA
CAACCTTCCAATTCTCCATTTGATAAGTTGCACAGTAATAGGTCTCTGCTCCATGCTAAAAGCAA
GCCAATTCCTTCA
Found at i:29961704 original size:31 final size:31
Alignment explanation
Indices: 29961637--29961764 Score: 78
Period size: 31 Copynumber: 3.7 Consensus size: 31
29961627 TCTTTTTATT
* * *
29961637 AATATATGAATTTTATTTTTGTTAATATATG
1 AATATATGAATATTATTTTGGATAATATATG
*
29961668 AATATATGAATATTATGTTTGGATATTATGACATATA
1 AATATATGAATATTAT-TTTGGATA--AT---ATATG
* *
29961705 AACTA-ATGAAATTATGTAACTTTTTGTTAATATATG
1 AA-TATATG-AA-TAT-T-A-TTTTGGATAATATATG
29961741 AATATATGAATATTATGTTTGGAT
1 AATATATGAATATTAT-TTTGGAT
29961765 GTAAAAAATT
Statistics
Matches: 74, Mismatches: 9, Indels: 27
0.67 0.08 0.25
Matches are distributed among these distances:
31 16 0.22
32 12 0.16
33 1 0.01
34 5 0.07
35 4 0.05
36 9 0.12
37 9 0.12
38 4 0.05
39 5 0.07
40 1 0.01
41 7 0.09
42 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.47
Consensus pattern (31 bp):
AATATATGAATATTATTTTGGATAATATATG
Found at i:29961940 original size:21 final size:21
Alignment explanation
Indices: 29961895--29961941 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
29961885 AAAAAATAAA
*
29961895 ATAG-ATTATATATTATTTTT
1 ATAGTATTATATATTATATTT
29961915 ATAGTATTATATATTATGATTT
1 ATAGTATTATATATTAT-ATTT
29961937 -TAGTA
1 ATAGTA
29961942 AATTCATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 17 0.71
22 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (21 bp):
ATAGTATTATATATTATATTT
Found at i:29962000 original size:55 final size:54
Alignment explanation
Indices: 29961934--29962039 Score: 124
Period size: 55 Copynumber: 1.9 Consensus size: 54
29961924 TATATTATGA
* * *
29961934 TTTTAGTAAATTCATA-TAAGAATAATTGTATTAAGAATTTTATTAAATTATATAT
1 TTTTAGTAAATT-ATATTAAGAATAATTATATTAA-AATATGATTAAATTATATAT
* * *
29961989 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTAT
1 TTTTAGTAAATTATA-TTAAGAATAATTATATTAAAATATGATTAAATTAT
29962040 TTACTATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
54 3 0.07
55 25 0.58
56 15 0.35
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (54 bp):
TTTTAGTAAATTATATTAAGAATAATTATATTAAAATATGATTAAATTATATAT
Found at i:29962259 original size:45 final size:44
Alignment explanation
Indices: 29962171--29962263 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 44
29962161 ATTACAACAT
*
29962171 CATTCCATTCAATCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
* *
29962215 CATTCCATTCAACCAAACA-ATTGAATTACTATTGCAGTTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTACAGTTCTATTC
29962260 CATT
1 CATT
29962264 ACACCTCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 22 0.50
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.34
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:29962274 original size:16 final size:16
Alignment explanation
Indices: 29962253--29962315 Score: 108
Period size: 16 Copynumber: 3.9 Consensus size: 16
29962243 CTATTGCAGT
*
29962253 TCTATTCCATTACACC
1 TCTATTCCATTACAGC
29962269 TCTATTCCATTACAGC
1 TCTATTCCATTACAGC
*
29962285 TCTATTCAATTACAGC
1 TCTATTCCATTACAGC
29962301 TCTATTCCATTACAG
1 TCTATTCCATTACAG
29962316 TGAACCAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.27, C:0.30, G:0.05, T:0.38
Consensus pattern (16 bp):
TCTATTCCATTACAGC
Found at i:29976069 original size:45 final size:46
Alignment explanation
Indices: 29975966--29976430 Score: 386
Period size: 45 Copynumber: 10.5 Consensus size: 46
29975956 ACAGATCGAG
* *
29975966 TCTTATCTTCCTGAAGTTGCAGTG-GAGCAGACT-AAG-TAGGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAAGAT-GGCAAA
* *
29976010 TCTTATC-CTTCTGAAGTTGCAGTGAG-GCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
* * ** *
29976055 TCTTATCTCCCTGAAGTTGCAGTG-GAGTAGATTAAAGCCGAC-AA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
29976099 TCTTATCTCCCTGAAGTTGCAGTGAG-GCAGACTAAAGATGGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
29976144 TCTTATCTCCCTGAAGTTGCAGTGAG-GCAGACTAAAGATGGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
* * *** *
29976189 TCTTATCTCCCTGAAGTTACAGTG-GAGCAGATTAAA-ACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
* * * * *
29976233 TCTTATCTCTCTGAAGTT--A-TAGAGAGCAGA-T-CACAT--CTAG
1 TCTTATCTCCCTGAAGTTGCAGT-GAGAGCAGACTAAAGATGGCAAA
* * ** * *
29976273 TCTTATCTCCTTGAAGTTGCAGT-AGAGTAGACT-AAGTAAAGTAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAAG-ATGGCAAA
* *
29976318 TCTTATC-CTCCTGAAGTTGCGGTGAG-GCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
* * ** *
29976363 TCTTATCT-CCTCAAAGTTGCAGTG-GAGCAGATTAAAGCCGAC-AA
1 TCTTATCTCCCT-GAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
* *
29976407 TCCTATCTCCCTGAAGTTGTAGTG
1 TCTTATCTCCCTGAAGTTGCAGTG
29976431 GAGTGGATTA
Statistics
Matches: 343, Mismatches: 52, Indels: 52
0.77 0.12 0.12
Matches are distributed among these distances:
40 17 0.05
41 9 0.03
42 7 0.02
43 9 0.03
44 112 0.33
45 182 0.53
46 7 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (46 bp):
TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAAGATGGCAAA
Found at i:29976103 original size:89 final size:89
Alignment explanation
Indices: 29975966--29976433 Score: 333
Period size: 89 Copynumber: 5.3 Consensus size: 89
29975956 ACAGATCGAG
* * * *
29975966 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATC-CTTCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAGACAAGTCTTATCTC-CCTGAAGTTGC
*
29976030 AGTGAGGCAGACTGAAGATGGCAAA
65 AGTGAGGCAGACTAAAGATGGCAAA
* * *
29976055 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGACAA-TCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGCAGACAAGTCTTATCTCCCTGAAGTTGC
29976119 AGTGAGGCAGACTAAAGATGGCAAA
65 AGTGAGGCAGACTAAAGATGGCAAA
* *
29976144 TCTTATCTCCCTGAAGTTGCAGT-GAGGCAGACTAAAG-ATGGCAAATCTTATCTCCCTGAAGTT
1 TCTTATCTCCCTGAAGTTGCAGTGGA-GCAGACT-AAGCA-GACAAGTCTTATCTCCCTGAAGTT
* * *** *
29976207 ACAGTG-GAGCAGATTAAA-ACCTCAGA
63 GCAGTGAG-GCAGACTAAAGATGGCAAA
* ** * * * * *
29976233 TCTTATCTCTCTGAAGTTATAG-AGAGCAGA-TCA-CA-TCTAGTCTTATCTCCTTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAGACAAGTCTTATCTCCCTGAAGTTGCA
* ** * *
29976294 GT-AGAGTAGACT-AAGTAAAGTAAG
66 GTGAG-GCAGACTAAAG-ATGGCAAA
* * * *
29976318 TCTTATC-CTCCTGAAGTTGCGGT-GAGGCAGACTGAAG-ATGGCAAATCTTATCT-CCTCAAAG
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGCA-GACAAGTCTTATCTCCCT-GAAG
* ** *
29976379 TTGCAGTG-GAGCAGATTAAAGCCGAC-AA
61 TTGCAGTGAG-GCAGACTAAAGATGGCAAA
* *
29976407 TCCTATCTCCCTGAAGTTGTAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
29976434 TGGATTAAAA
Statistics
Matches: 299, Mismatches: 56, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
83 2 0.01
84 31 0.10
85 20 0.07
86 7 0.02
87 2 0.01
88 9 0.03
89 155 0.52
90 70 0.23
91 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAGACAAGTCTTATCTCCCTGAAGTTGCA
GTGAGGCAGACTAAAGATGGCAAA
Found at i:29976205 original size:134 final size:133
Alignment explanation
Indices: 29975966--29976250 Score: 416
Period size: 134 Copynumber: 2.1 Consensus size: 133
29975956 ACAGATCGAG
* * *
29975966 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAATCTTATCCTCCTGAAGTTGCA
* * * *
29976031 GTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGA
66 GTGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACC-A
29976096 CA-A
130 CAGA
29976099 TCTTATCTCCCTGAAGTTGCAGT-GAGGCAGACTAAAG-ATGGCAAATCTTAT-CTCCCTGAAGT
1 TCTTATCTCCCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-GGCAAATCTTATCCT-CCTGAAGT
29976161 TGCAGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAA
62 TGCAGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAA
*
29976226 CCTCAGA
127 CCACAGA
*
29976233 TCTTATCTCTCTGAAGTT
1 TCTTATCTCCCTGAAGTT
29976251 ATAGAGAGCA
Statistics
Matches: 138, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
132 2 0.01
133 34 0.25
134 102 0.74
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (133 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAATCTTATCCTCCTGAAGTTGCA
GTGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCAC
AGA
Found at i:29976333 original size:174 final size:174
Alignment explanation
Indices: 29976099--29976424 Score: 446
Period size: 174 Copynumber: 1.9 Consensus size: 174
29976089 AAGCCGACAA
**
29976099 TCTTATCTCCCTGAAGTTGCAGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGAGGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
*
29976164 AGTGAGGCAGACTAAAGATGGCAAATCTTATCTCC-CTGAAGTTACAGTGGAGCAGATTAAAACC
66 AGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCTC-AAAGTTACAGTGGAGCAGATTAAAACC
* * *
29976228 -TCAGATCTTATCTCTCTGAAGTTATAGAGAGCAGATCACATCTAG
130 GACA-ATCCTATCTCCCTGAAGTTATAGAGAGCAGATCACATCTAG
* * * *
29976273 TCTTATCTCCTTGAAGTTGCAGT-AGAGTAGACT-AAGTAAAGTAAGTCTTATC-CTCCTGAAGT
1 TCTTATCTCCCTGAAGTTGCAGTGAG-GCAGACTAAAG-AAAGCAAATCTTATCTC-CCTGAAGT
* * * *
29976335 TGCGGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCTCAAAGTTGCAGTGGAGCAGATTAAAG
63 TGCAGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCTCAAAGTTACAGTGGAGCAGATTAAAA
29976400 CCGACAATCCTATCTCCCTGAAGTT
128 CCGACAATCCTATCTCCCTGAAGTT
29976425 GTAGTGGAGT
Statistics
Matches: 133, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
173 6 0.05
174 124 0.93
175 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (174 bp):
TCTTATCTCCCTGAAGTTGCAGTGAGGCAGACTAAAGAAAGCAAATCTTATCTCCCTGAAGTTGC
AGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCTCAAAGTTACAGTGGAGCAGATTAAAACCG
ACAATCCTATCTCCCTGAAGTTATAGAGAGCAGATCACATCTAG
Found at i:29978048 original size:22 final size:23
Alignment explanation
Indices: 29978023--29978065 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
29978013 GTATAATATA
*
29978023 TATTTTTTTG-TTTATATGTAAT
1 TATTTTTTTGATCTATATGTAAT
29978045 TATTTTTTTGATCTATATGTA
1 TATTTTTTTGATCTATATGTA
29978066 TATATCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.65
Consensus pattern (23 bp):
TATTTTTTTGATCTATATGTAAT
Found at i:29978444 original size:4 final size:4
Alignment explanation
Indices: 29978430--29978464 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
29978420 TTATTATGTA
29978430 TATT CTATT TATT TATT TATT TATT TATAT TATT T
1 TATT -TATT TATT TATT TATT TATT TAT-T TATT T
29978465 CTATGACGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 21 0.72
5 8 0.28
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:29978464 original size:9 final size:9
Alignment explanation
Indices: 29978413--29978464 Score: 54
Period size: 8 Copynumber: 5.8 Consensus size: 9
29978403 TTTGTATGTG
*
29978413 ATTATTTTT
1 ATTATTTAT
*
29978422 ATTATGTAT
1 ATTATTTAT
29978431 ATTCTATTTAT
1 A-T-TATTTAT
29978442 -TTATTTAT
1 ATTATTTAT
29978450 -TTATTTAT
1 ATTATTTAT
29978458 ATTATTT
1 ATTATTT
29978465 CTATGACGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
8 15 0.41
9 15 0.41
10 1 0.03
11 6 0.16
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (9 bp):
ATTATTTAT
Found at i:30000036 original size:18 final size:17
Alignment explanation
Indices: 30000008--30000042 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
29999998 ATTATTAAGA
*
30000008 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
30000025 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
30000043 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:30000049 original size:54 final size:54
Alignment explanation
Indices: 29999991--30000177 Score: 187
Period size: 54 Copynumber: 3.2 Consensus size: 54
29999981 TTCATATAAG
29999991 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
* * * * *
30000045 AATATTAATTATTTCA-AATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATT-T-TATTA-A--AT--TATA-TAT--TTTAATTAAAAT-ATAT-
**
30000109 AG
53 TT
30000111 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
30000165 AATATTAATTATT
1 AATATTAATTATT
30000178 TCAAATTATA
Statistics
Matches: 105, Mismatches: 14, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
54 28 0.27
55 8 0.08
56 13 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 13 0.12
65 8 0.08
66 15 0.14
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (54 bp):
AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
Found at i:30000086 original size:59 final size:58
Alignment explanation
Indices: 30000021--30000206 Score: 184
Period size: 59 Copynumber: 3.1 Consensus size: 58
30000011 TTATTAAATT
30000021 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTAT-TTTTATAGTATC
* * ** * *
30000080 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTA-TTAAGAATT-TTATTA-A--AT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTCA-AATTATTTTTATAGTAT
*
30000140 T
58 C
30000141 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTAT-TTTTATAGTATC
30000200 ATATATT
1 ATATATT
30000207 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
54 15 0.15
55 8 0.08
56 5 0.05
57 4 0.04
59 17 0.17
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 8 0.08
66 15 0.15
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATTTTTATAGTATC
Found at i:30000101 original size:120 final size:120
Alignment explanation
Indices: 29999948--30000296 Score: 671
Period size: 120 Copynumber: 2.9 Consensus size: 120
29999938 TGCAGTTTCT
29999948 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
*
30000013 ATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATC
66 ATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATA
30000068 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
30000133 ATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATA
66 ATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATA
30000188 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
* *
30000253 ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTAT
66 ATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
30000297 ATTTAAATAT
Statistics
Matches: 226, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 226 1.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
ATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATA
Found at i:30000116 original size:66 final size:65
Alignment explanation
Indices: 30000045--30000243 Score: 224
Period size: 66 Copynumber: 3.2 Consensus size: 65
30000035 AAATATATTT
30000045 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTTCAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
30000110 G
65 G
* * * * * *
30000111 AATATTAATTA-TTAAGAATT-TTATTA-A--AT--TATA-TAT--TTTAATTAAAAT-ATAT-T
1 AATATTAATTATTTCA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
*
30000164 T
65 G
30000165 AATATTAATTATTTCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTTCAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
30000230 G
65 G
30000231 AATATTAATTATT
1 AATATTAATTATT
30000244 AAGAATTTTA
Statistics
Matches: 105, Mismatches: 14, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
54 15 0.14
55 8 0.08
56 13 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 13 0.12
65 8 0.08
66 28 0.27
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.49
Consensus pattern (65 bp):
AATATTAATTATTTCAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:30000156 original size:18 final size:17
Alignment explanation
Indices: 30000128--30000162 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
30000118 ATTATTAAGA
*
30000128 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
30000145 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
30000163 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:30000282 original size:16 final size:16
Alignment explanation
Indices: 30000261--30000305 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
30000251 TTATTAAATT
*
30000261 ATATATTTTAATTATA
1 ATATATTTTAATAATA
30000277 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
*
30000292 ATTATATTTAAATA
1 A-TATATTTTAATA
30000306 TGATTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 10 0.40
16 9 0.36
17 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:30000311 original size:16 final size:16
Alignment explanation
Indices: 30000262--30000302 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
30000252 TATTAAATTA
*
30000262 TATATTTTAATTATAA-
1 TATA-TTTAATAATAAT
30000278 TATATTTAATAATAAT
1 TATATTTAATAATAAT
30000294 TATATTTAA
1 TATATTTAA
30000303 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATTTAATAATAAT
Found at i:30000529 original size:45 final size:44
Alignment explanation
Indices: 30000447--30000537 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
30000437 ACCTCTATTC
* *
30000447 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
*** * *
30000491 CATTCAACCAAACAGTTGATTTGCTATTACATCTCTATTCAATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCAATTA
30000536 CA
1 CA
30000538 CCTCTATTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 16 0.41
45 23 0.59
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
Found at i:30000564 original size:16 final size:16
Alignment explanation
Indices: 30000516--30000569 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
30000506 TTGATTTGCT
* *
30000516 ATTACATCTCTATTCA
1 ATTACACCTCTATTCC
30000532 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
30000548 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
30000564 AATACA
1 ATTACA
30000570 GTGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:30005311 original size:16 final size:15
Alignment explanation
Indices: 30005257--30005354 Score: 56
Period size: 16 Copynumber: 6.3 Consensus size: 15
30005247 AACATTAAAT
*
30005257 TTAATTTAATTTAAGA
1 TTAA-TTAATTTAATA
*
30005273 -TAATTACTTTAATA
1 TTAATTAATTTAATA
*
30005287 TTGATTTAATTTAATA
1 TT-AATTAATTTAATA
**
30005303 CTTAATTAATAAAATA
1 -TTAATTAATTTAATA
* * *
30005319 CT-ATTAAGATAAATA
1 TTAATTAA-TTTAATA
30005334 TTAAATTAAATTTAATA
1 TT-AATT-AATTTAATA
30005351 TTAA
1 TTAA
30005355 ACTATTAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
14 14 0.23
15 11 0.18
16 23 0.37
17 12 0.19
18 2 0.03
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (15 bp):
TTAATTAATTTAATA
Found at i:30006500 original size:35 final size:35
Alignment explanation
Indices: 30006451--30006518 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
30006441 CTGTTGCTAG
*
30006451 TAAAGCAATTCCATACATAAGTCATATACCCAAAC
1 TAAAGCAATGCCATACATAAGTCATATACCCAAAC
* *
30006486 TAAAGCCATGCCATACATAAGTCATGTACCCAA
1 TAAAGCAATGCCATACATAAGTCATATACCCAA
30006519 CATACCAGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (35 bp):
TAAAGCAATGCCATACATAAGTCATATACCCAAAC
Found at i:30014081 original size:48 final size:48
Alignment explanation
Indices: 30013997--30014089 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
30013987 TCAAGAGGGA
* * *
30013997 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGCAAAG
1 ATAAATAGTGATAAAAGTGTAGACAGTGAAAAACCAAGTTTAGCAAAG
*
30014045 ATAAATAGTGATAAAAGTGTAGATAGTGAAAAACCAAGTTTAGCA
1 ATAAATAGTGATAAAAGTGTAGACAGTGAAAAACCAAGTTTAGCA
30014090 TTGCATAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.46, C:0.08, G:0.24, T:0.23
Consensus pattern (48 bp):
ATAAATAGTGATAAAAGTGTAGACAGTGAAAAACCAAGTTTAGCAAAG
Found at i:30018699 original size:21 final size:21
Alignment explanation
Indices: 30018675--30018717 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
30018665 CTTTTAGTAT
30018675 TTAGGTTAGAATTGATTTGAC
1 TTAGGTTAGAATTGATTTGAC
30018696 TTAGGTTAGAATTGATTTGAC
1 TTAGGTTAGAATTGATTTGAC
30018717 T
1 T
30018718 CTCGCCTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (21 bp):
TTAGGTTAGAATTGATTTGAC
Found at i:30022442 original size:24 final size:24
Alignment explanation
Indices: 30022410--30022456 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
30022400 TAAACTTAAA
*
30022410 AATTGAGTTTAAACAATTTAAAAG
1 AATTCAGTTTAAACAATTTAAAAG
*
30022434 AATTCAGTTTAAACAGTTTAAAA
1 AATTCAGTTTAAACAATTTAAAA
30022457 CTTAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (24 bp):
AATTCAGTTTAAACAATTTAAAAG
Found at i:30026694 original size:45 final size:45
Alignment explanation
Indices: 30026635--30026790 Score: 206
Period size: 45 Copynumber: 3.5 Consensus size: 45
30026625 ATATAAATAT
*
30026635 AGGTACTATGTACCAGTGTTGGCTATCATGCTATATGCATACAAC
1 AGGTACTATGTACCAGTGTTGGCTATCATGCTATATACATACAAC
* * * * *
30026680 AGGTACTATTTACCAGTGTTGGCTTTCATG-TCACATAAATACAAT
1 AGGTACTATGTACCAGTGTTGGCTATCATGCT-ATATACATACAAC
** *
30026725 AGGTACTATGTACTGGTGTTGGCTATCATGCCATATACATACAAC
1 AGGTACTATGTACCAGTGTTGGCTATCATGCTATATACATACAAC
*
30026770 AGGTACTATGTATCAGTGTTG
1 AGGTACTATGTACCAGTGTTG
30026791 ATTTTCTTAT
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.01
45 91 0.99
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (45 bp):
AGGTACTATGTACCAGTGTTGGCTATCATGCTATATACATACAAC
Found at i:30028763 original size:91 final size:91
Alignment explanation
Indices: 30028602--30028789 Score: 205
Period size: 91 Copynumber: 2.1 Consensus size: 91
30028592 ATTTAATAAT
* * * *
30028602 CTGCAAACACTAGTGGTTTATCCACAATTTTTACTAACAACTTTAATCTGCAAAAAAGTTGTGCA
1 CTGCAAACACTAGTGGTTTATCCACAATTTATACTAACAAATTTAATCTACAAAAAAGTTATGCA
* * * *
30028667 TTCACAACTACTAGTAGCGTATTAAC
66 ATCACAAATACTAGCAGCGTATGAAC
* *** * *** *
30028693 CTGCAAACACTAGTGGTTTATCCATAATTTATACTGGTAAATTTTATCTACAAACCCGTTATGTA
1 CTGCAAACACTAGTGGTTTATCCACAATTTATACTAACAAATTTAATCTACAAAAAAGTTATGCA
* *
30028758 ATCACAAATACTGGCAGTGTATGAAC
66 ATCACAAATACTAGCAGCGTATGAAC
30028784 CTGCAA
1 CTGCAA
30028790 TACTGGCGGC
Statistics
Matches: 78, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (91 bp):
CTGCAAACACTAGTGGTTTATCCACAATTTATACTAACAAATTTAATCTACAAAAAAGTTATGCA
ATCACAAATACTAGCAGCGTATGAAC
Found at i:30029299 original size:9 final size:9
Alignment explanation
Indices: 30029282--30029315 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
30029272 TGAGTTTTCG
30029282 AATTCGAAT
1 AATTCGAAT
*
30029291 AACTCGAAT
1 AATTCGAAT
30029300 AATTCGAAT
1 AATTCGAAT
30029309 AATTCGA
1 AATTCGA
30029316 CTATCAACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:30029433 original size:29 final size:29
Alignment explanation
Indices: 30029373--30029435 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
30029363 TTTTACTTTT
* *
30029373 CCCT-CAAAACTTTTACTCCTTCCCACTT
1 CCCTCCAAAACTTTTACTCCCTCCCACTC
30029401 CCCTCCAAAACTTTTACTCCCCTCCC-CTC
1 CCCTCCAAAACTTTTACT-CCCTCCCACTC
30029430 CCCTCC
1 CCCTCC
30029436 CCTCTCAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 4 0.13
29 21 0.68
30 6 0.19
ACGTcount: A:0.17, C:0.52, G:0.00, T:0.30
Consensus pattern (29 bp):
CCCTCCAAAACTTTTACTCCCTCCCACTC
Found at i:30030512 original size:25 final size:25
Alignment explanation
Indices: 30030484--30030539 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
30030474 ATTTCAGTGA
*
30030484 CTAATGTAGTCTCTTGAATTTGGGT
1 CTAATATAGTCTCTTGAATTTGGGT
30030509 CTAATATAGTCTCTTGAATTTGGGT
1 CTAATATAGTCTCTTGAATTTGGGT
30030534 CTAATA
1 CTAATA
30030540 GCTTGCAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (25 bp):
CTAATATAGTCTCTTGAATTTGGGT
Found at i:30030600 original size:23 final size:23
Alignment explanation
Indices: 30030574--30030627 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
30030564 GATCATGAAC
*
30030574 ATATTTATGAAAATATGTGTTTA
1 ATATTTATGAAAATATGTATTTA
** * *
30030597 ATATACATGAATATATTTATTTA
1 ATATTTATGAAAATATGTATTTA
*
30030620 ATGTTTAT
1 ATATTTAT
30030628 ACAAGTTTTC
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (23 bp):
ATATTTATGAAAATATGTATTTA
Found at i:30030693 original size:44 final size:42
Alignment explanation
Indices: 30030610--30030694 Score: 107
Period size: 44 Copynumber: 2.0 Consensus size: 42
30030600 TACATGAATA
* *
30030610 TATTTATTTAATGTTTATACAAGTTTTCATTTAACTGAAACC
1 TATTTATTTAATGTTTAAACAAGTTTTCATTGAACTGAAACC
* **
30030652 TATTTATTTAATGTTTACAAAGAAGTTTTTGTTGAACTGAAAC
1 TATTTATTTAATGTTT--AAACAAGTTTTCATTGAACTGAAAC
30030695 AAATGAGGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 16 0.44
44 20 0.56
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (42 bp):
TATTTATTTAATGTTTAAACAAGTTTTCATTGAACTGAAACC
Found at i:30031874 original size:19 final size:20
Alignment explanation
Indices: 30031840--30031879 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
30031830 AAAAAATTGA
30031840 ATATTTTAAGTTTTTTATAT
1 ATATTTTAAGTTTTTTATAT
*
30031860 ATATTTTTA-TTTTTTATAT
1 ATATTTTAAGTTTTTTATAT
30031879 A
1 A
30031880 ATTAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
ATATTTTAAGTTTTTTATAT
Found at i:30034154 original size:27 final size:27
Alignment explanation
Indices: 30034099--30034151 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
30034089 AGTTTAAATT
** *
30034099 TTATATTAATATTAATATTAAATATAA
1 TTATATTAATATTAATAAAAAATAAAA
30034126 TTATATTAATATTAA-AAAAAATAAAA
1 TTATATTAATATTAATAAAAAATAAAA
30034152 ATTCCCCATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
TTATATTAATATTAATAAAAAATAAAA
Found at i:30044693 original size:22 final size:22
Alignment explanation
Indices: 30044668--30044710 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
30044658 TTAAAAGAGA
* *
30044668 CATAATTATTCAACTAATATTT
1 CATAACTATTCAAATAATATTT
30044690 CATAACTATTCAAATAATATT
1 CATAACTATTCAAATAATATT
30044711 ACTTGTATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (22 bp):
CATAACTATTCAAATAATATTT
Found at i:30050192 original size:33 final size:33
Alignment explanation
Indices: 30050148--30050345 Score: 144
Period size: 33 Copynumber: 5.5 Consensus size: 33
30050138 ATCAGTGGAT
30050148 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
* * * *
30050181 TCAGCATTTAGCAACCCCTTTCACATTTAAGATACGGTGGGA
1 TCAGCACTTAGCAACCAC---CA-A--TGA-AT-CGG-GGAA
* *
30050223 TCAGCACTTAGCAACCACCAATGATTCAGGGAA
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
* * * *
30050256 TCAACACTTAGCAACCCCTTCACATTTAAAATATGGTGGAA
1 TCAGCACTTAGCAACCAC--CA-A--T-GAAT-CGG-GGAA
*
30050297 TCAGCACTTAGCAACCATCAATGAATCGGGGAA
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
30050330 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
30050346 CCCTTTATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 34
0.70 0.12 0.19
Matches are distributed among these distances:
33 55 0.43
34 4 0.03
35 6 0.05
36 6 0.05
37 1 0.01
38 3 0.02
39 8 0.06
40 3 0.02
41 22 0.17
42 19 0.15
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGAATCGGGGAA
Found at i:30050329 original size:74 final size:75
Alignment explanation
Indices: 30050142--30050347 Score: 324
Period size: 74 Copynumber: 2.8 Consensus size: 75
30050132 TCCGTTATCA
* *
30050142 GTGGATTCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCATTTAGCAACCCCTTTCACAT
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
*
30050207 TTAAGATACG
66 TTAAAATACG
* * * *
30050217 GTGGGATCAGCACTTAGCAACCACCAATGATTCAGGGAATCAACACTTAGCAACCCC-TTCACAT
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
*
30050281 TTAAAATATG
66 TTAAAATACG
*
30050291 GTGGAATCAGCACTTAGCAACCATCAATGAATCGGGGAATCAGCACTTAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCC
30050348 CTTTATATTC
Statistics
Matches: 118, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
74 67 0.57
75 51 0.43
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (75 bp):
GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
TTAAAATACG
Found at i:30053272 original size:11 final size:11
Alignment explanation
Indices: 30053258--30053282 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
30053248 CAAGTGAAGA
30053258 ATGAATGAATG
1 ATGAATGAATG
30053269 ATGAATGAATG
1 ATGAATGAATG
30053280 ATG
1 ATG
30053283 TTTGGAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (11 bp):
ATGAATGAATG
Found at i:30057996 original size:7 final size:7
Alignment explanation
Indices: 30057984--30058011 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
30057974 ATGGAGGCCT
30057984 GGTATAA
1 GGTATAA
30057991 GGTATAA
1 GGTATAA
30057998 GGTATAA
1 GGTATAA
30058005 GGTATAA
1 GGTATAA
30058012 ATATACTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (7 bp):
GGTATAA
Found at i:30058207 original size:35 final size:35
Alignment explanation
Indices: 30058168--30058237 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
30058158 GTAAATACAG
*
30058168 AATAGAGATAAAGTCTGCCAAGACAATAAACACGA
1 AATAGAAATAAAGTCTGCCAAGACAATAAACACGA
* * ** *
30058203 AATAGAAATAAATTTTTTCAGGACAATAAACACGA
1 AATAGAAATAAAGTCTGCCAAGACAATAAACACGA
30058238 GGTAAGTTCG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.20
Consensus pattern (35 bp):
AATAGAAATAAAGTCTGCCAAGACAATAAACACGA
Found at i:30058556 original size:20 final size:20
Alignment explanation
Indices: 30058531--30058569 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
30058521 GCGAAGACCC
30058531 AATGAGAATTAGAGAAAGAT
1 AATGAGAATTAGAGAAAGAT
30058551 AATGAGAATTAGAGAAAGA
1 AATGAGAATTAGAGAAAGA
30058570 CAGGTCTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.18
Consensus pattern (20 bp):
AATGAGAATTAGAGAAAGAT
Found at i:30063305 original size:74 final size:74
Alignment explanation
Indices: 30063214--30063365 Score: 286
Period size: 74 Copynumber: 2.1 Consensus size: 74
30063204 GTCTTACAAA
30063214 CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
1 CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
30063279 ATACTTTAT
66 ATACTTTAT
* *
30063288 CCTCAGACTCAATTTTCCTTTTTGACAAAACCAAATAATCTTTTTCCATAGAGAGACCTTTAGAA
1 CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
30063353 ATACTTTAT
66 ATACTTTAT
30063362 CCTC
1 CCTC
30063366 TAAATTCAAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (74 bp):
CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
ATACTTTAT
Found at i:30066408 original size:62 final size:59
Alignment explanation
Indices: 30066300--30066500 Score: 163
Period size: 62 Copynumber: 3.2 Consensus size: 59
30066290 ATCACTTTAA
* * *
30066300 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
30066359 TATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATGTTAAGATAATC
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAACATTAAATTAAATTTAATATT---A-AAT-
30066424 ACTT
58 -C-T
* * * ** *
30066428 TAACATTAAACTAATAAAATA-TTATTAAGATAAGTATTAAATTTAATTTAATATTAAAT-T
1 T---ATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
*
30066488 TATTAAAATAATA
1 TATTAAATTAATA
30066501 TTATTTTTAG
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
57 11 0.09
59 20 0.17
60 2 0.02
61 1 0.01
62 27 0.23
64 3 0.03
65 2 0.02
66 3 0.03
68 26 0.22
69 3 0.03
71 3 0.03
72 15 0.13
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:30066497 original size:17 final size:17
Alignment explanation
Indices: 30066462--30066494 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
30066452 TTAAGATAAG
*
30066462 TATTAAATTTAATTTAA
1 TATTAAATTTAATTAAA
30066479 TATTAAATTT-ATTAAA
1 TATTAAATTTAATTAAA
30066495 ATAATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTAAATTTAATTAAA
Found at i:30077793 original size:91 final size:91
Alignment explanation
Indices: 30077668--30077875 Score: 344
Period size: 91 Copynumber: 2.3 Consensus size: 91
30077658 AAGATTTTAG
* * * *
30077668 TAAATTAATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAC
*
30077733 ATTTAATATTAATTATTTTAAATTATA
65 ATTTAATAATAATTATTTTAAATTATA
*
30077760 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTACA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTACA
30077825 TTTAATAATAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
*
30077851 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
30077876 GTTATAATTA
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 94 0.86
92 15 0.14
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTACA
TTTAATAATAATTATTTTAAATTATA
Found at i:30077828 original size:47 final size:47
Alignment explanation
Indices: 30077687--30077828 Score: 143
Period size: 47 Copynumber: 3.1 Consensus size: 47
30077677 ATAAGAACAT
* *
30077687 TTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATTAAA
* **
30077734 TTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--AAA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATT-AT-TAA-ATTAAA
* * *
30077778 TTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTACA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATTAAA
30077825 TTTA
1 TTTA
30077829 ATAATAATTA
Statistics
Matches: 75, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.04
44 24 0.32
45 8 0.11
46 8 0.11
47 29 0.39
48 3 0.04
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (47 bp):
TTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATTAAA
Found at i:30077842 original size:47 final size:47
Alignment explanation
Indices: 30077700--30077843 Score: 131
Period size: 47 Copynumber: 3.1 Consensus size: 47
30077690 ATTATTAAGA
* * *
30077700 ATTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATT
1 ATTTTATGAAATTATATATAATTATTAAATTAAATTTAATAATAATT
* **
30077747 A-TTT-T-AAATTATATA-AATTCATATAAGA--AAATTT-ATTATCAAGA
1 ATTTTATGAAATTATATATAATT-AT-TAA-ATTAAATTTAATAAT-AATT
* *
30077791 ATTTTATGAAATTATATATTATTATTAAATTACATTTAATAATAATT
1 ATTTTATGAAATTATATATAATTATTAAATTAAATTTAATAATAATT
30077838 ATTTTA
1 ATTTTA
30077844 AATTATACAA
Statistics
Matches: 75, Mismatches: 11, Indels: 22
0.69 0.10 0.20
Matches are distributed among these distances:
43 6 0.08
44 20 0.27
45 8 0.11
46 8 0.11
47 26 0.35
48 7 0.09
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (47 bp):
ATTTTATGAAATTATATATAATTATTAAATTAAATTTAATAATAATT
Found at i:30077885 original size:47 final size:46
Alignment explanation
Indices: 30077742--30077909 Score: 159
Period size: 47 Copynumber: 3.7 Consensus size: 46
30077732 TATTTAATAT
30077742 TAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTATCAA
1 TAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTAT-AA
* * * *
30077789 GAATT-TTATGAAATTATATATTATT-AT-TAA-ATTACATTTA--ATAA
1 TAATTATT-TTAAATTATATA-AATTCATATAAGA--AAATTTATTATAA
* *
30077833 TAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTAGTTA
1 TAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA-TAA
* * *
30077880 TAATTATTTTAAATTTTATTAAGTCATATA
1 TAATTATTTTAAATTATATAAATTCATATA
30077910 TTTTAATTAA
Statistics
Matches: 96, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
43 3 0.03
44 24 0.25
45 8 0.08
46 7 0.07
47 51 0.53
48 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (46 bp):
TAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTATAA
Found at i:30078012 original size:16 final size:15
Alignment explanation
Indices: 30077991--30078020 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
30077981 TAAATTCATA
30077991 TAAGAATTTTGATTAT
1 TAAGAATTTT-ATTAT
30078007 TAAGAATTTTATTA
1 TAAGAATTTTATTA
30078021 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
TAAGAATTTTATTAT
Found at i:30078016 original size:120 final size:120
Alignment explanation
Indices: 30077891--30078181 Score: 476
Period size: 120 Copynumber: 2.4 Consensus size: 120
30077881 AATTATTTTA
* * * * *
30077891 AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAAATTTTATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCT-AAATTATATTT
* * *
30077955 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
30078011 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTAAATTATATTTT
30078076 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
30078131 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
30078182 TTTAAATATG
Statistics
Matches: 160, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
120 159 0.99
121 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:30078028 original size:59 final size:60
Alignment explanation
Indices: 30077964--30078151 Score: 150
Period size: 61 Copynumber: 3.1 Consensus size: 60
30077954 TTATAGTATC
*
30077964 ATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTAAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAA-T
* * * * * * * * * * ** *
30078025 ATATATTTTAATTAAAATATATTTA-ATAATAATTATGCTAAATT-A-TCTTTTA-TAGTAT
1 ATATATTATGATTTAAGTAAATTCATATAAGAATTTTGAT-TATTAAGAATTTTATTA-AAT
* * *
30078083 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 -ATATATTATGATTTAAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAA-T
30078145 ATATATT
1 ATATATT
30078152 TTAATTATAA
Statistics
Matches: 89, Mismatches: 30, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
58 3 0.03
59 27 0.30
60 22 0.25
61 34 0.38
62 3 0.03
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (60 bp):
ATATATTATGATTTAAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAAT
Found at i:30078040 original size:18 final size:17
Alignment explanation
Indices: 30078012--30078046 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
30078002 ATTATTAAGA
*
30078012 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
30078029 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
30078047 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:30078166 original size:16 final size:16
Alignment explanation
Indices: 30078145--30078186 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
30078135 TTATTAAATT
*
30078145 ATATATTTTAATTATA
1 ATATATTTTAATAATA
30078161 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
30078176 AT-TATGTTTAA
1 ATATAT-TTTAA
30078187 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:30078171 original size:15 final size:15
Alignment explanation
Indices: 30078136--30078177 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
30078126 TTAAGAATTT
*
30078136 TATTAAATTAT-ATA
1 TATTTAATTATAATA
30078150 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
30078164 TATTTAATAATAAT
1 TATTTAATTATAAT
30078178 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:30078426 original size:16 final size:16
Alignment explanation
Indices: 30078400--30078448 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
30078390 TTGATTTGCT
*
30078400 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
* *
30078416 ATTACTCCTCTATTTC
1 ATTACGCCTCTATTCC
*
30078432 ATTACGCCTCCATTCC
1 ATTACGCCTCTATTCC
30078448 A
1 A
30078449 ATACAACGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.20, C:0.35, G:0.04, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:30079616 original size:7 final size:7
Alignment explanation
Indices: 30079573--30079597 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
30079563 TTTAAAATCA
30079573 TTTTTAT
1 TTTTTAT
30079580 TTTTTAT
1 TTTTTAT
30079587 TTTTTAT
1 TTTTTAT
30079594 TTTT
1 TTTT
30079598 CAAAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:30081224 original size:29 final size:29
Alignment explanation
Indices: 30081187--30081334 Score: 296
Period size: 29 Copynumber: 5.1 Consensus size: 29
30081177 AATTGTTCTT
30081187 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
30081216 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
30081245 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
30081274 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
30081303 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
30081332 TTA
1 TTA
30081335 GGAGAAAGTT
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 119 1.00
ACGTcount: A:0.21, C:0.14, G:0.17, T:0.49
Consensus pattern (29 bp):
TTAATGGAGTTCATCTTGGTTTAACTTTC
Found at i:30094933 original size:7 final size:7
Alignment explanation
Indices: 30094921--30094949 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
30094911 TAATTAGGGG
30094921 TTAAAAT
1 TTAAAAT
30094928 TTAAAAT
1 TTAAAAT
30094935 TTAAAAT
1 TTAAAAT
30094942 TTAAAAT
1 TTAAAAT
30094949 T
1 T
30094950 AATAATGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TTAAAAT
Found at i:30095991 original size:21 final size:22
Alignment explanation
Indices: 30095963--30096026 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
30095953 GCTTTGCCGG
30095963 TCAGGCACTATATGTGTCGTAT
1 TCAGGCACTATATGTGTCGTAT
* ** *
30095985 T-AGGCACCACGTGTGTCAT-T
1 TCAGGCACTATATGTGTCGTAT
* *
30096005 TCGGGCACTTTATGTGTCGTAT
1 TCAGGCACTATATGTGTCGTAT
30096027 ACTGCTTCTG
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.87
22 2 0.07
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (22 bp):
TCAGGCACTATATGTGTCGTAT
Found at i:30096288 original size:23 final size:23
Alignment explanation
Indices: 30096262--30096415 Score: 128
Period size: 23 Copynumber: 7.1 Consensus size: 23
30096252 GGATTCGCTG
*
30096262 ATCAGGCACTTTATGTGTCATAT
1 ATCAGGCACTTTATGTGTCGTAT
*
30096285 ATCAGGAACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * ****
30096308 TTCAAGCACCACGTGTGTCGT-T
1 ATCAGGCACTTTATGTGTCGTAT
*
30096330 -TCAGGCAC-TTATGTGTTGTAT
1 ATCAGGCACTTTATGTGTCGTAT
*
30096351 ATCAAGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* **
30096374 TTCA-G-AC-TCGTGTGTCG--T
1 ATCAGGCACTTTATGTGTCGTAT
30096392 ATCAGGCAC-TTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
30096414 AT
1 AT
30096416 TGATCAGGTA
Statistics
Matches: 102, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
18 4 0.04
19 1 0.01
20 25 0.25
21 10 0.10
22 12 0.12
23 50 0.49
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:30096368 original size:43 final size:46
Alignment explanation
Indices: 30096262--30096415 Score: 128
Period size: 43 Copynumber: 3.5 Consensus size: 46
30096252 GGATTCGCTG
* *
30096262 ATCAGGCACTTTATGTGTCATATATCAGGAACTTTATGTGTCGTAT
1 ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
* **** * *
30096308 TTCAAGCACCACGTGTGTCGT-T-TCAGGCAC-TTATGTGTTGTAT
1 ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
* **
30096351 ATCAAGCACTTTATGTGTCGTATTTCA-G-AC-TCGTGTGTCG--T
1 ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
*
30096392 ATCAGGCAC-TTATGTGTCGTATAT
1 ATCAAGCACTTTATGTGTCGTATAT
30096416 TGATCAGGTA
Statistics
Matches: 87, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
40 14 0.16
41 9 0.10
43 37 0.43
44 9 0.10
45 4 0.05
46 14 0.16
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (46 bp):
ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
Found at i:30096370 original size:66 final size:63
Alignment explanation
Indices: 30096262--30096415 Score: 218
Period size: 66 Copynumber: 2.4 Consensus size: 63
30096252 GGATTCGCTG
* *
30096262 ATCAGGCACTTTATGTGTCATATATCAGGAACTTTATGTGTCGTATTTCAAGCACCACGTGTGTC
1 ATCAGGCAC-TTATGTGTCGTATATCAAGAACTTTATGTGTCGTATTTC-AG-A-CACGTGTGTC
30096327 GT
62 GT
* * * *
30096329 TTCAGGCACTTATGTGTTGTATATCAAGCACTTTATGTGTCGTATTTCAGACTCGTGTGTCGT
1 ATCAGGCACTTATGTGTCGTATATCAAGAACTTTATGTGTCGTATTTCAGACACGTGTGTCGT
30096392 ATCAGGCACTTATGTGTCGTATAT
1 ATCAGGCACTTATGTGTCGTATAT
30096416 TGATCAGGTA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
63 33 0.42
64 1 0.01
65 2 0.03
66 35 0.44
67 8 0.10
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (63 bp):
ATCAGGCACTTATGTGTCGTATATCAAGAACTTTATGTGTCGTATTTCAGACACGTGTGTCGT
Found at i:30101395 original size:45 final size:45
Alignment explanation
Indices: 30101331--30101489 Score: 185
Period size: 45 Copynumber: 3.6 Consensus size: 45
30101321 TACTGAGTAT
***
30101331 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
* *
30101376 CATTGATTATAAAGGTGGTTGCTATATGTTGACTCCACCGAAAAT
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
** * * * *
30101421 CATTGAAAATAAAGGTGGTTGCCATATGATGATTCCACCGAATAT
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
* * *
30101466 AATTAATTATAAGGGTGG-TGCTAT
1 CATTGATTATAAAGGTGGTTGCTAT
30101490 GTGCTGATCC
Statistics
Matches: 97, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 5 0.05
45 92 0.95
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (45 bp):
CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
Found at i:30111784 original size:39 final size:40
Alignment explanation
Indices: 30111689--30111950 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
30111679 TTGAATGATG
*
30111689 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
30111727 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
30111768 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
30111807 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
30111846 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
30111885 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
30111924 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30111951 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:30118465 original size:23 final size:25
Alignment explanation
Indices: 30118414--30118466 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
30118404 TCTTTGTGAG
* *
30118414 CTTCCTGATTAGTGGCTCTCCTGAG
1 CTTCCTGATTAGTGGCTCGCCTGAA
*
30118439 CTTCCTGA-TA-TGGCTCGCTTGAA
1 CTTCCTGATTAGTGGCTCGCCTGAA
30118462 CTTCC
1 CTTCC
30118467 CAATATATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 15 0.60
24 2 0.08
25 8 0.32
ACGTcount: A:0.13, C:0.30, G:0.21, T:0.36
Consensus pattern (25 bp):
CTTCCTGATTAGTGGCTCGCCTGAA
Found at i:30118541 original size:24 final size:24
Alignment explanation
Indices: 30118509--30118569 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
30118499 GTCTGTTCGA
*
30118509 AGCTACCCGTTATTGGCT-TGTATG
1 AGCTTCCCGTTATTGGCTCT-TATG
30118533 AGCTTCCCGATTA-TGGCTCTTATG
1 AGCTTCCCG-TTATTGGCTCTTATG
30118557 AGCTTCCCGTTAT
1 AGCTTCCCGTTAT
30118570 ATAGCCCGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 3 0.09
24 26 0.79
25 4 0.12
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.38
Consensus pattern (24 bp):
AGCTTCCCGTTATTGGCTCTTATG
Found at i:30118622 original size:25 final size:25
Alignment explanation
Indices: 30118544--30118626 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
30118534 GCTTCCCGAT
* * *
30118544 TATGGCTCTTATGAGCTTCCCGTTA
1 TATGGCTCATATAAGCTTCCTGTTA
* * *
30118569 TATAGCCCGA-ATAAGCTTCTTGTTA
1 TATGGCTC-ATATAAGCTTCCTGTTA
30118594 TATGGCTCATATAAGCTTCCTGTTA
1 TATGGCTCATATAAGCTTCCTGTTA
30118619 TATGGCTC
1 TATGGCTC
30118627 GAGAGAGAGC
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.02
25 46 0.98
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.39
Consensus pattern (25 bp):
TATGGCTCATATAAGCTTCCTGTTA
Found at i:30119648 original size:31 final size:32
Alignment explanation
Indices: 30119603--30119663 Score: 115
Period size: 31 Copynumber: 1.9 Consensus size: 32
30119593 AGATAATTTT
30119603 AAAGAGTTTTTATTAGGATTCAATTACTCTAG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTAG
30119635 AAAGAG-TTTTATTAGGATTCAATTACTCT
1 AAAGAGTTTTTATTAGGATTCAATTACTCT
30119664 TGTAATTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 23 0.79
32 6 0.21
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTAG
Found at i:30139465 original size:7 final size:7
Alignment explanation
Indices: 30139453--30139492 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
30139443 AAAAAGAGAG
30139453 ATGAAAA
1 ATGAAAA
30139460 ATG-AAA
1 ATGAAAA
30139466 ATG-AAA
1 ATGAAAA
30139472 ATGAAAA
1 ATGAAAA
30139479 ATGAAAA
1 ATGAAAA
30139486 ATGAAAA
1 ATGAAAA
30139493 TGGAGAGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 12 0.38
7 20 0.62
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:30139468 original size:6 final size:6
Alignment explanation
Indices: 30139457--30139494 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
30139447 AGAGAGATGA
30139457 AAAATG AAAATG AAAATG AAAAATG AAAAATG AAAATG
1 AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAATG
30139495 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 18 0.58
7 13 0.42
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:30139469 original size:13 final size:13
Alignment explanation
Indices: 30139453--30139494 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
30139443 AAAAAGAGAG
30139453 ATGAAAAATGAAA
1 ATGAAAAATGAAA
30139466 ATG-AAAATGAAAA
1 ATGAAAAATG-AAA
30139479 ATGAAAAATGAAA
1 ATGAAAAATGAAA
30139492 ATG
1 ATG
30139495 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.22
13 15 0.56
14 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:30140832 original size:87 final size:87
Alignment explanation
Indices: 30140686--30141452 Score: 1291
Period size: 87 Copynumber: 8.8 Consensus size: 87
30140676 AGATCAGTGA
* *
30140686 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * **
30140751 ATTCCTACGTTAACAGTAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
30140773 AGATCGAAAACAAAGTCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
30140838 CTTCCTGCGTTAACAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
30140860 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
30140925 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
30140947 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGGGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
30141012 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
30141034 AGATCGAAAACAAAGCCTTGTCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAACATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
30141099 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
30141121 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
** *
30141186 CTTCCTGCGTTAATGGCAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
30141208 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
30141273 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
30141295 AGATCGAAAACAAAACCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAACAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
30141360 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
30141382 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
30141447 CTTCCT
66 CTTCCT
30141453 AAGCGCTAGC
Statistics
Matches: 637, Mismatches: 43, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 637 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:30140882 original size:43 final size:43
Alignment explanation
Indices: 30140834--30141404 Score: 148
Period size: 45 Copynumber: 13.1 Consensus size: 43
30140824 ATAACAGATA
*
30140834 TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
1 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
* * * * * * * * *
30140877 TTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGT-TAAAGATAGCAGATC
1 TTGCCTTCC-TGC-GTTAACAGCGAAGCAGATCGAAA-ACA--AAACC
30140921 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
1 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
* * * * * * * * *
30140964 TTGCC-TCCAT-CGGTT-GCAGGGGAGCTGGT-TAAAGATAGCAGATC
1 TTGCCTTCC-TGC-GTTAACAGCGAAGCAGATCGAAA-ACA--AAACC
*
30141008 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCC
1 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
* * * * * * *
30141051 TTGTC-TCCAT-CGGTT-GCAGTGGAGCTAG-T-TAAAGATAACATATC
1 TTGCCTTCC-TGC-GTTAACAGCGAAGC-AGATCGAAA-ACAA-A-ACC
*
30141095 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCC
1 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
* * * * * * * * *
30141138 TTGCC-TCCAT-CGATT-GCAGTGGAGCTGGT-TAAAGATAGCAGATC
1 TTGCCTTCC-TGCG-TTAACAGCGAAGCAGATCGAAA-ACA--AAACC
** * *
30141182 TTGCCTTCCTGCGTTAATGGCAAAGCAGATCGAAAACAAAGCC
1 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
* * * * * * * * *
30141225 TTGCC-TCCAT-CGATT-GCAGTGGAGCTGGT-TAAAGATAGCAGATC
1 TTGCCTTCC-TGCG-TTAACAGCGAAGCAGATCGAAA-ACA--AAACC
30141269 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
1 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
* * * * * * * **
30141312 TTGCC-TCCATTG-GTT-GCAGTGGAGCTGGT-TAAAGATAACAGATA
1 TTGCCTTCC--TGCGTTAACAGCGAAGCAGATCGAAA-ACAA-A-ACC
*
30141356 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCC
1 TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
30141399 TTGCCT
1 TTGCCT
30141405 CCATCGGTTG
Statistics
Matches: 354, Mismatches: 118, Indels: 112
0.61 0.20 0.19
Matches are distributed among these distances:
41 18 0.05
42 88 0.25
43 73 0.21
44 68 0.19
45 89 0.25
46 18 0.05
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (43 bp):
TTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAACC
Found at i:30141630 original size:44 final size:41
Alignment explanation
Indices: 30141575--30141845 Score: 206
Period size: 44 Copynumber: 6.4 Consensus size: 41
30141565 TTACAAGTCT
*
30141575 TATCTCTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAC--AA-AAACCAATCC
** *
30141619 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAACC--A-ATCC
* * * * * *
30141663 TATCTCTCTGAAGTTGCAGTAGAGCAGATC-ACATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAACCAATCC
*
30141704 TATCTCCTTGAAGTTG-AGTGGAGCAGACGAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAC-AA-AAACCAATCC
* * * * * *
30141746 TATCTCCCTGAAGTTGCAATGGAGCGGATTAAGACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAAC-CA-ATCC
* * * * *
30141790 TATCTCTCTGAAGTTGCAGTAGAGCAGATC-ATATCCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAACCAATCC
30141831 TATCTCCCTGAAGTT
1 TATCTCCCTGAAGTT
30141846 ACAGCAGAGA
Statistics
Matches: 184, Mismatches: 32, Indels: 25
0.76 0.13 0.10
Matches are distributed among these distances:
39 1 0.01
40 10 0.05
41 41 0.22
42 27 0.15
43 17 0.09
44 88 0.48
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAACCAATCC
Found at i:30141751 original size:127 final size:129
Alignment explanation
Indices: 30141570--30141845 Score: 450
Period size: 127 Copynumber: 2.2 Consensus size: 129
30141560 GGAAATTACA
30141570 AGTCTTATCT-CTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTT
1 AGTCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTT
* *
30141634 GCAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
65 GCAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
*
30141699 AGTCTTATCTCCTTGAAGTTG-AGTGGAGCAGAC-GAAGAAACCAATCCTATCTCCCTGAAGTTG
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
* * *
30141762 CAATGGAGCGGATTAAGACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
66 CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
* *
30141826 AATCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCTTGAAGTT
30141846 ACAGCAGAGA
Statistics
Matches: 138, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
127 106 0.77
128 12 0.09
129 18 0.13
130 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (129 bp):
AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
Found at i:30141841 original size:85 final size:81
Alignment explanation
Indices: 30141619--30141845 Score: 224
Period size: 85 Copynumber: 2.7 Consensus size: 81
30141609 AAACCAATCC
* * *
30141619 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCAGATCAAAACC--A-ATCTTATCTCCCTGAAGTTGCAATA
* *
30141684 GAGCAGATCACATCCAGTCT
62 GAGCAGATAACACCCAGTCT
* *
30141704 TATCTCCTTGAAGTTG-AGTGGAGCAGA-CGAAGAAACCAATCCTATCTCCCTGAAGTTGCAATG
1 TATCTCC-TGAAGTTGCAGTGGAGCAGATC--A-AAACCAATCTTATCTCCCTGAAGTTGCAATA
* *
30141767 GAGCGGATTAAGACCACAGATCT
62 GAGCAGA-TAACACC-CAG-TCT
* * *
30141790 TATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCCAATCTTATCTCCCTGAAGTT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGATCAAAACCAATCTTATCTCCCTGAAGTT
30141846 ACAGCAGAGA
Statistics
Matches: 119, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
83 27 0.23
84 18 0.15
85 39 0.33
86 23 0.19
87 11 0.09
88 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (81 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGATCAAAACCAATCTTATCTCCCTGAAGTTGCAATAGAGC
AGATAACACCCAGTCT
Found at i:30146107 original size:238 final size:236
Alignment explanation
Indices: 30145640--30146108 Score: 663
Period size: 238 Copynumber: 2.0 Consensus size: 236
30145630 TTTTAGGATA
* *
30145640 TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGGCTCAATTGCCACTACTTAATATTCATATGAT
1 TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGACTAAATTGCCACTACTTAATATTCATATGAT
* * * *
30145705 AAGGTCATCTTACTTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTTCTTTGT
66 AAGATAATCTTAATTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTCCTTTGT
* * * *
30145770 GTGTGTTTCATTTTAGTGAAATACCAAAAAAATTATACTAAAATGGATGTTCTCTCTTTTGTTAA
131 GTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTGTGAA
**
30145835 AAATGCTGGAAAGATAGGTTTTGCTGCAAAAGAGATAATTT
196 AAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGATAATTT
* * * * *
30145876 TGTTTTCTAAAGAATTGATCTTTGAGGGCTATA-ACTAAACTTTGTCAGTATTTAATATTTATAT
1 TGTTTTCT-AAGAATTGACCTTTGAGGGCTATAGACTAAA--TTGCCACTACTTAATATTCATAT
* *
30145940 GGTAAGATAATCTTAATTAGATCCTTGGCTTCA-TTCTTGGTTTCAATATGTAAAGGTTGTTCCT
63 GATAAGATAATCTTAATTAGATCCTTGGCCTCACTT-TTGGTTTCAATATGTAAAGGTTGTTCCT
* * * * *
30146004 TTGTGTGTGTTTCATTGTAATGAAATTCCAAGACAATGATACTAAAATGGTTGTTGTCTCTTTTG
127 TTGTGTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTG
*
30146069 TGAAAAATGCTGGAAAGATCGCATTTGCTGCAAAAGAGAT
192 TGAAAAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGAT
30146109 CGATGTGGGA
Statistics
Matches: 204, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
236 12 0.06
237 25 0.12
238 167 0.82
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (236 bp):
TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGACTAAATTGCCACTACTTAATATTCATATGAT
AAGATAATCTTAATTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTCCTTTGT
GTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTGTGAA
AAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGATAATTT
Found at i:30156113 original size:14 final size:14
Alignment explanation
Indices: 30156094--30156122 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
30156084 GAATGAGAAG
30156094 ACCTGTGATCCCCA
1 ACCTGTGATCCCCA
30156108 ACCTGTGATCCCCA
1 ACCTGTGATCCCCA
30156122 A
1 A
30156123 GCAAAACGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.41, G:0.14, T:0.21
Consensus pattern (14 bp):
ACCTGTGATCCCCA
Found at i:30158236 original size:17 final size:18
Alignment explanation
Indices: 30158204--30158237 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
30158194 AGAACTCGAA
*
30158204 TGATTTAAACTCAAAATC
1 TGATTCAAACTCAAAATC
30158222 TGATTCAAA-TCAAAAT
1 TGATTCAAACTCAAAAT
30158238 GGCCGAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (18 bp):
TGATTCAAACTCAAAATC
Found at i:30160571 original size:261 final size:261
Alignment explanation
Indices: 30160107--30160614 Score: 971
Period size: 261 Copynumber: 1.9 Consensus size: 261
30160097 CTAAAATATT
*
30160107 ATTTATGAGAAAGGATTGTATAAAATTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
1 ATTTATGAGAAAGGATTGTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
30160172 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
66 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
* *
30160237 ATAATGAGGAAAAAGTTGATTTGTCATTTTACTATTGAAAATGAATAAAAATGACATGAAATCAC
131 ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
30160302 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAATAACGCCTCTATTC
196 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAATAACGCCTCTATTC
30160367 C
261 C
* *
30160368 ATTTATGAGAAAGGATTTTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGC
1 ATTTATGAGAAAGGATTGTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
30160433 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
66 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
30160498 ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
131 ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
30160563 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAAT
196 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAAT
30160615 TTCAAATTTA
Statistics
Matches: 242, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
261 242 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (261 bp):
ATTTATGAGAAAGGATTGTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAATAACGCCTCTATTC
C
Done.