Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 109 of 187
Found at i:32099803 original size:6 final size:6
Alignment explanation
Indices: 32099794--32099822 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
32099784 GAAAGAAAGA
32099794 AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
32099823 GAATAATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:32099839 original size:6 final size:6
Alignment explanation
Indices: 32099745--32099839 Score: 55
Period size: 6 Copynumber: 14.5 Consensus size: 6
32099735 TTTAAACAAC
* *
32099745 AAAAAG AAAGAAAG AAAAAAC AAAAAG AATAAAG AGAAAG AAAGAAAG
1 AAAAAG -AA-AAAG -AAAAAG AAAAAG AA-AAAG AAAAAG -AA-AAAG
* * * * *
32099793 AAAAAAC AAAAAC AAAAAC AAAAAC AAAAAG AATAATG AAAAAG AAA
1 -AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA-AAAG AAAAAG AAA
32099840 GTGAGGACGT
Statistics
Matches: 75, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
6 42 0.56
7 19 0.25
8 14 0.19
ACGTcount: A:0.79, C:0.05, G:0.13, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:32101051 original size:21 final size:21
Alignment explanation
Indices: 32101009--32101051 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32100999 AAATGACCTA
** *
32101009 TTTTAGTAATTTTATTTTATT
1 TTTTAGTAATTTTAAGTAATT
*
32101030 TTTTAGTATTTTTAAGTAATT
1 TTTTAGTAATTTTAAGTAATT
32101051 T
1 T
32101052 ACTCTAATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTTAGTAATTTTAAGTAATT
Found at i:32115160 original size:19 final size:19
Alignment explanation
Indices: 32115113--32115182 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 19
32115103 AAAATGATAA
32115113 AATCAAGTTAAA-ATGGTTTC
1 AATCAAGTTAAACAT--TTTC
**
32115133 AATTGAGTTAAACATTTTC
1 AATCAAGTTAAACATTTTC
*
32115152 AATCAAGTTAAAACTATTTTA
1 AATCAAGTT-AAAC-ATTTTC
*
32115173 AAACAAGTTA
1 AATCAAGTTA
32115183 GTATTGCTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
19 11 0.27
20 15 0.37
21 15 0.37
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (19 bp):
AATCAAGTTAAACATTTTC
Found at i:32115179 original size:21 final size:20
Alignment explanation
Indices: 32115138--32115182 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
32115128 GTTTCAATTG
* *
32115138 AGTT-AAACATTTTCAATCA
1 AGTTAAAACATTTTAAAACA
32115157 AGTTAAAACTATTTTAAAACA
1 AGTTAAAAC-ATTTTAAAACA
32115178 AGTTA
1 AGTTA
32115183 GTATTGCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 4 0.18
21 14 0.64
ACGTcount: A:0.47, C:0.11, G:0.07, T:0.36
Consensus pattern (20 bp):
AGTTAAAACATTTTAAAACA
Found at i:32116819 original size:41 final size:41
Alignment explanation
Indices: 32116762--32116843 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
32116752 CACGACCGTG
32116762 TGGCAACCCGTGTAGGTCACACGGCCATGTG-GTAGGTCGTA
1 TGGCAACCCGTGTAGGTCACACGGCCATGTGTG-AGGTCGTA
* * * *
32116803 TGGCAGCCCTTGTAGGTCACCCGGGCATGTGTGAGGTCGTA
1 TGGCAACCCGTGTAGGTCACACGGCCATGTGTGAGGTCGTA
32116844 CGTCAAGTCG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
41 35 0.97
42 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.35, T:0.23
Consensus pattern (41 bp):
TGGCAACCCGTGTAGGTCACACGGCCATGTGTGAGGTCGTA
Found at i:32121023 original size:47 final size:47
Alignment explanation
Indices: 32120969--32121076 Score: 153
Period size: 47 Copynumber: 2.3 Consensus size: 47
32120959 AATTATGTGC
* * * *
32120969 TGGCTTGTCCACAATATGCTATGTGGCCGTTTTCGACATTTGTATGG
1 TGGCTTGTCCACAATATGCTACGTGGCCATTTTCGACATTTATATAG
* *
32121016 TGGCTTGTCCACAATATGCTACGTGGTCATTTTCGACATTTATGTAG
1 TGGCTTGTCCACAATATGCTACGTGGCCATTTTCGACATTTATATAG
*
32121063 TAGCTTGTCCACAA
1 TGGCTTGTCCACAA
32121077 ATGGTGTGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (47 bp):
TGGCTTGTCCACAATATGCTACGTGGCCATTTTCGACATTTATATAG
Found at i:32134688 original size:22 final size:21
Alignment explanation
Indices: 32134663--32134706 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
32134653 TGATAAACTT
32134663 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
32134685 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
32134706 T
1 T
32134707 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:32140407 original size:22 final size:23
Alignment explanation
Indices: 32140377--32140423 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
32140367 ATGTAAAAAT
*
32140377 AAAGCAAAA-AAGGAGAAAAAGAA
1 AAAGCAAAACAAAG-GAAAAAGAA
32140400 AAAG-AAAACAAAGGAAAAAGAA
1 AAAGCAAAACAAAGGAAAAAGAA
32140422 AA
1 AA
32140424 CAAAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (23 bp):
AAAGCAAAACAAAGGAAAAAGAA
Found at i:32140434 original size:16 final size:17
Alignment explanation
Indices: 32140392--32140440 Score: 73
Period size: 16 Copynumber: 2.9 Consensus size: 17
32140382 AAAAAAGGAG
32140392 AAAAAGAAAAAGAAAAC
1 AAAAAGAAAAAGAAAAC
*
32140409 -AAAGGAAAAAGAAAAC
1 AAAAAGAAAAAGAAAAC
32140425 AAAAAGAAAAAAGAAA
1 AAAAAG-AAAAAGAAA
32140441 TGATGAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 15 0.54
17 4 0.14
18 9 0.32
ACGTcount: A:0.82, C:0.04, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAC
Found at i:32143632 original size:29 final size:29
Alignment explanation
Indices: 32143611--32143666 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
32143601 GTGTGGCAGC
*
32143611 TCGTATAGGTCACACGGTCGTGTGGTAAG
1 TCGTATAGGTCACACGATCGTGTGGTAAG
* *
32143640 TCGTGTGGGTCACACGATCGTGTGGTA
1 TCGTATAGGTCACACGATCGTGTGGTA
32143667 GGCCATATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.29
Consensus pattern (29 bp):
TCGTATAGGTCACACGATCGTGTGGTAAG
Found at i:32143737 original size:29 final size:29
Alignment explanation
Indices: 32143682--32143737 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
32143672 TATGGTAAAC
* *
32143682 TGTGTGAGCCACACGATCGTGTTGTAGCT
1 TGTGTGAGCCACACGATCATGTGGTAGCT
*
32143711 TGTGTGGGCCACAC-AGTCATGTGGTAG
1 TGTGTGAGCCACACGA-TCATGTGGTAG
32143738 GCCATGTGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 1 0.04
29 22 0.96
ACGTcount: A:0.18, C:0.20, G:0.34, T:0.29
Consensus pattern (29 bp):
TGTGTGAGCCACACGATCATGTGGTAGCT
Found at i:32148671 original size:23 final size:23
Alignment explanation
Indices: 32148636--32148708 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
32148626 AGTCAATAAT
*
32148636 TTGCACCTA-AATGCCGCTATCAC
1 TTGCA-CTATAATGCCACTATCAC
*
32148659 TTGCACTGTAATGCCACTGA-CAC
1 TTGCACTATAATGCCACT-ATCAC
*
32148682 TTGCACTATAGTGCCACTATCAC
1 TTGCACTATAATGCCACTATCAC
32148705 TTGC
1 TTGC
32148709 GCATATAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
22 3 0.07
23 39 0.91
24 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.29
Consensus pattern (23 bp):
TTGCACTATAATGCCACTATCAC
Found at i:32154326 original size:36 final size:36
Alignment explanation
Indices: 32154286--32154357 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
32154276 TCTTTGCTTG
*
32154286 CTTAGTTGTTTCAATCATCTTCAGATTCTTGTCACT
1 CTTAGTTGTTGCAATCATCTTCAGATTCTTGTCACT
*
32154322 CTTAGTTGTTGCAATTATCTTCAGATTCTTGTCACT
1 CTTAGTTGTTGCAATCATCTTCAGATTCTTGTCACT
32154358 ATGTATTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.47
Consensus pattern (36 bp):
CTTAGTTGTTGCAATCATCTTCAGATTCTTGTCACT
Found at i:32154702 original size:17 final size:17
Alignment explanation
Indices: 32154675--32154720 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 17
32154665 AAATTTTAGG
32154675 GGGGAAATAAAAAGTTTT
1 GGGGAAAT-AAAAGTTTT
32154693 GGGG-AATAAAAG-TTT
1 GGGGAAATAAAAGTTTT
32154708 GAGGGAAAGTAAA
1 G-GGGAAA-TAAA
32154721 TAGGGGGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 4 0.16
16 8 0.32
17 5 0.20
18 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.22
Consensus pattern (17 bp):
GGGGAAATAAAAGTTTT
Found at i:32156137 original size:94 final size:94
Alignment explanation
Indices: 32155958--32156137 Score: 236
Period size: 94 Copynumber: 1.9 Consensus size: 94
32155948 TGGCAAACTT
* * *
32155958 CCCCTTGTTTACTGTCCCAATAGATCCTCTATGTTGCCATAGCCAAGTTATGGTCTTAAACATGT
1 CCCCGTGTTTACTGTCCCAACAGATCCTCTATGTTGCCATAGCCAAGCTATGGTCTTAAACATGT
* * *
32156023 AACCTCATGTTTAATTTCCTGGTAGACTA
66 AACCCCATGTTCAATGTCCTGGTAGACTA
* * ** *
32156052 CCCCGTGTTTACTTTCCCAGCAGA-CTCTCTATGTTGCCATAGCTGAGCTATGGTCTTACACATG
1 CCCCGTGTTTACTGTCCCAACAGATC-CTCTATGTTGCCATAGCCAAGCTATGGTCTTAAACATG
*
32156116 TAACCCCATGTTCCATGTCCTG
65 TAACCCCATGTTCAATGTCCTG
32156138 ACAGACTCCA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 72 0.99
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (94 bp):
CCCCGTGTTTACTGTCCCAACAGATCCTCTATGTTGCCATAGCCAAGCTATGGTCTTAAACATGT
AACCCCATGTTCAATGTCCTGGTAGACTA
Found at i:32156620 original size:149 final size:148
Alignment explanation
Indices: 32156376--32156768 Score: 457
Period size: 149 Copynumber: 2.6 Consensus size: 148
32156366 CATTTGATTG
* * * *
32156376 CAGAATCTTAACGGAAATTTCATTTCCCTATCCATCTGGACATTCTTCCATTTCTCCATTTCTAA
1 CAGAATCTTAATGGAAATTTCATTTCCCTATCCATCAGCACATTCCTCCATTTCTCCATTTCTAA
* * * *** *
32156441 CTTTGATGCTTGAACA-CTACGGTGTCCCCTCCGTAAGGCCCGA-AGCTTCACACATCACGGTTT
66 CATTAATGCTCGAACACCTA--GTGTCCCCTCAACAAGG-CCGAGAGCTTCACACATCACGATTT
* *
32156504 GCACTCAACAACACCTGATTT
128 GCACTCAACAACACATGATAT
** * * * *
32156525 TGGAATCTTAATAGAAATCTCATTTCCCTATCCATCAGCCCATTCCTCCATTTCACCATTTCTAA
1 CAGAATCTTAATGGAAATTTCATTTCCCTATCCATCAGCACATTCCTCCATTTCTCCATTTCTAA
* * * *
32156590 CCTTAATGCTCGAACACCGTAGTGTACCCTCAACAAGGCCTAGAGCTTCGCACATCACGATTTGC
66 CATTAATGCTCGAACACC-TAGTGTCCCCTCAACAAGGCCGAGAGCTTCACACATCACGATTTGC
*
32156655 ACTCAGCAACACATGATAT
130 ACTCAACAACACATGATAT
* ** * *
32156674 CAGAATCTTAATGGAAATTTCATTTCCCTATCCATCCGTTCATTCCTCTATTTTTCCATTTCTAA
1 CAGAATCTTAATGGAAATTTCATTTCCCTATCCATCAGCACATTCCTCCATTTCTCCATTTCTAA
*
32156739 TATTAATGCTCGAACACCATAGTGTCCCCT
66 CATTAATGCTCGAACACC-TAGTGTCCCCT
32156769 TTGCACTCTC
Statistics
Matches: 204, Mismatches: 37, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
148 3 0.01
149 198 0.97
150 1 0.00
151 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (148 bp):
CAGAATCTTAATGGAAATTTCATTTCCCTATCCATCAGCACATTCCTCCATTTCTCCATTTCTAA
CATTAATGCTCGAACACCTAGTGTCCCCTCAACAAGGCCGAGAGCTTCACACATCACGATTTGCA
CTCAACAACACATGATAT
Found at i:32157917 original size:20 final size:21
Alignment explanation
Indices: 32157872--32157919 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
32157862 AAAAATCCCC
* *
32157872 CAAGTATTGATACTTTTTAAA
1 CAAGTATCGATAATTTTTAAA
32157893 CAAGTATCGATAATTTTTAAA
1 CAAGTATCGATAATTTTTAAA
32157914 -AAGTAT
1 CAAGTAT
32157920 AAATAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (21 bp):
CAAGTATCGATAATTTTTAAA
Found at i:32157928 original size:21 final size:21
Alignment explanation
Indices: 32157885--32157925 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32157875 GTATTGATAC
**
32157885 TTTTTAAACAAGTATCGATAA
1 TTTTTAAACAAGTATAAATAA
32157906 TTTTTAAA-AAGTATAAATAA
1 TTTTTAAACAAGTATAAATAA
32157926 ATTGTAACGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (21 bp):
TTTTTAAACAAGTATAAATAA
Found at i:32168353 original size:31 final size:28
Alignment explanation
Indices: 32168299--32168360 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 28
32168289 TAATTTCTAA
* *
32168299 ATATAAAATTTAGTATGATAATAAGATATT
1 ATATAAAAATTAGTATGAAAAT-A-ATATT
*
32168329 ATATAAAAATTAGTCATTAAAATAATATT
1 ATATAAAAATTAGT-ATGAAAATAATATT
32168358 ATA
1 ATA
32168361 CATATTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 8 0.29
30 14 0.50
31 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (28 bp):
ATATAAAAATTAGTATGAAAATAATATT
Found at i:32170307 original size:18 final size:18
Alignment explanation
Indices: 32170280--32170319 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32170270 CATAATTCTA
32170280 GAGGCAGAGGAGGACGTG
1 GAGGCAGAGGAGGACGTG
* * *
32170298 GAGGCGGAGGCGGAGGTG
1 GAGGCAGAGGAGGACGTG
32170316 GAGG
1 GAGG
32170320 TGGTCGGGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.10, G:0.62, T:0.05
Consensus pattern (18 bp):
GAGGCAGAGGAGGACGTG
Found at i:32175080 original size:15 final size:16
Alignment explanation
Indices: 32175062--32175094 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32175052 TATAGGGCAT
32175062 AACC-TTAACCCTTCC
1 AACCTTTAACCCTTCC
32175077 AACCTTTAACCCTTCC
1 AACCTTTAACCCTTCC
32175093 AA
1 AA
32175095 GTGCAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.30, C:0.42, G:0.00, T:0.27
Consensus pattern (16 bp):
AACCTTTAACCCTTCC
Found at i:32175442 original size:29 final size:31
Alignment explanation
Indices: 32175402--32175472 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 31
32175392 CATCATGCTC
* * *
32175402 CATTTTAATCACTTATGTT-T-GAAATATTA
1 CATTTTAGTCACTTACGTTATCGAAATATAA
* *
32175431 CATTTTAGTCACTTACGTTATCGTATTATAA
1 CATTTTAGTCACTTACGTTATCGAAATATAA
32175462 CATTTTAGTCA
1 CATTTTAGTCA
32175473 TTAAGCATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 17 0.49
30 1 0.03
31 17 0.49
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.46
Consensus pattern (31 bp):
CATTTTAGTCACTTACGTTATCGAAATATAA
Found at i:32187266 original size:28 final size:28
Alignment explanation
Indices: 32187234--32187296 Score: 126
Period size: 28 Copynumber: 2.2 Consensus size: 28
32187224 CCACTGTGTC
32187234 GAGAAACGCCACCAGTAAATAACAGTTA
1 GAGAAACGCCACCAGTAAATAACAGTTA
32187262 GAGAAACGCCACCAGTAAATAACAGTTA
1 GAGAAACGCCACCAGTAAATAACAGTTA
32187290 GAGAAAC
1 GAGAAAC
32187297 TTCAAAAAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.48, C:0.21, G:0.19, T:0.13
Consensus pattern (28 bp):
GAGAAACGCCACCAGTAAATAACAGTTA
Found at i:32189216 original size:36 final size:37
Alignment explanation
Indices: 32189175--32189253 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 37
32189165 TGAGAGTAGA
* *
32189175 AAGAAAGAGATATAAGAGAAATATAAAAGGATGAGAG
1 AAGAAAGAGACATAAGAGAAAGATAAAAGGATGAGAG
** * *
32189212 -AGAAAGAGACATGGGAGAAAGATAGAGGGATGAGAG
1 AAGAAAGAGACATAAGAGAAAGATAAAAGGATGAGAG
32189248 AAGAAA
1 AAGAAA
32189254 AGTCAAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
36 30 0.86
37 5 0.14
ACGTcount: A:0.56, C:0.01, G:0.33, T:0.10
Consensus pattern (37 bp):
AAGAAAGAGACATAAGAGAAAGATAAAAGGATGAGAG
Found at i:32189427 original size:49 final size:47
Alignment explanation
Indices: 32189329--32189427 Score: 117
Period size: 49 Copynumber: 2.1 Consensus size: 47
32189319 TATTTTATGA
* ** * * *
32189329 AAAATAAAGAATCAAATATAAAAGAGGAAAGAGAATAACATATATGG
1 AAAATAAAGAATCAAATATAAAAAAAAAAAGAAAATAACAAATACGG
*
32189376 AAAATAAAGAATCAGATATGGAAAAAAAAAAAGAAAATAACAAATACGG
1 AAAATAAAGAATCAAATAT--AAAAAAAAAAAGAAAATAACAAATACGG
32189425 AAA
1 AAA
32189428 TATGTATTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 18 0.42
49 25 0.58
ACGTcount: A:0.66, C:0.05, G:0.15, T:0.14
Consensus pattern (47 bp):
AAAATAAAGAATCAAATATAAAAAAAAAAAGAAAATAACAAATACGG
Found at i:32191036 original size:10 final size:10
Alignment explanation
Indices: 32191021--32191046 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32191011 TTCAATTTTT
32191021 AAAATTTTAA
1 AAAATTTTAA
32191031 AAAATTTTAA
1 AAAATTTTAA
32191041 AAAATT
1 AAAATT
32191047 CAAAAGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:32196324 original size:21 final size:23
Alignment explanation
Indices: 32196300--32196344 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
32196290 TTTTTAAAAA
*
32196300 TTATTAATA-TATTTTTAT-ATT
1 TTATTAATACAATTTTTATGATT
*
32196321 TTATTTATACAATTTTTATGATT
1 TTATTAATACAATTTTTATGATT
32196344 T
1 T
32196345 AAATTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 8 0.40
23 4 0.20
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (23 bp):
TTATTAATACAATTTTTATGATT
Found at i:32197563 original size:27 final size:27
Alignment explanation
Indices: 32197510--32197565 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
32197500 CAACTTATTT
* * * *
32197510 TAAATATATTATAAAATACATTTAAAA
1 TAAACATATCATAAAATACAATGAAAA
*
32197537 TAAACATATCATAAAATATAATGAAAA
1 TAAACATATCATAAAATACAATGAAAA
32197564 TA
1 TA
32197566 TAAATATATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (27 bp):
TAAACATATCATAAAATACAATGAAAA
Found at i:32197620 original size:21 final size:21
Alignment explanation
Indices: 32197595--32197645 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 21
32197585 TAATCAATTT
32197595 ATATATTATAATAAAATAATA
1 ATATATTATAATAAAATAATA
* *
32197616 ATATATT-TAA-ATAATCATA
1 ATATATTATAATAAAATAATA
32197635 A-ATATTA-AATA
1 ATATATTATAATA
32197646 TTAAGTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 7 0.27
19 9 0.35
20 3 0.12
21 7 0.27
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
ATATATTATAATAAAATAATA
Found at i:32197627 original size:16 final size:17
Alignment explanation
Indices: 32197608--32197645 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
32197598 TATTATAATA
*
32197608 AAATAATAATATAT-TT
1 AAATAATAATAAATATT
*
32197624 AAATAATCATAAATATT
1 AAATAATAATAAATATT
32197641 AAATA
1 AAATA
32197646 TTAAGTTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATAATAATAAATATT
Found at i:32198565 original size:27 final size:27
Alignment explanation
Indices: 32198512--32198567 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
32198502 CAACTTATTT
* * * *
32198512 TAAATATATTATAAAATACATTTAAAA
1 TAAACATATCATAAAATACAATGAAAA
*
32198539 TAAACATATCATAAAATATAATGAAAA
1 TAAACATATCATAAAATACAATGAAAA
32198566 TA
1 TA
32198568 TAAATATATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (27 bp):
TAAACATATCATAAAATACAATGAAAA
Found at i:32198622 original size:21 final size:21
Alignment explanation
Indices: 32198597--32198647 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 21
32198587 TAATCAATTT
32198597 ATATATTATAATAAAATAATA
1 ATATATTATAATAAAATAATA
* *
32198618 ATATATT-TAA-ATAATCATA
1 ATATATTATAATAAAATAATA
32198637 A-ATATTA-AATA
1 ATATATTATAATA
32198648 TTAAGTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 7 0.27
19 9 0.35
20 3 0.12
21 7 0.27
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
ATATATTATAATAAAATAATA
Found at i:32198629 original size:16 final size:17
Alignment explanation
Indices: 32198610--32198647 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
32198600 TATTATAATA
*
32198610 AAATAATAATATAT-TT
1 AAATAATAATAAATATT
*
32198626 AAATAATCATAAATATT
1 AAATAATAATAAATATT
32198643 AAATA
1 AAATA
32198648 TTAAGTTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATAATAATAAATATT
Found at i:32207443 original size:32 final size:32
Alignment explanation
Indices: 32207402--32207484 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
32207392 TGGGTGTGGT
32207402 CGTGTGGGCCACACGGGCTAGGCCAAGT-TGGG
1 CGTGTGGGCCACACGGGCTAGGCCAA-TCTGGG
* * * *
32207434 CGTGTGGGCCAAATGGGCAAGGCTAATCTGGG
1 CGTGTGGGCCACACGGGCTAGGCCAATCTGGG
*
32207466 CGTGTGGGCTACACGGGCT
1 CGTGTGGGCCACACGGGCT
32207485 TGTGGGCTCA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 1 0.02
32 41 0.98
ACGTcount: A:0.17, C:0.23, G:0.42, T:0.18
Consensus pattern (32 bp):
CGTGTGGGCCACACGGGCTAGGCCAATCTGGG
Found at i:32210381 original size:49 final size:49
Alignment explanation
Indices: 32210320--32210516 Score: 186
Period size: 49 Copynumber: 3.9 Consensus size: 49
32210310 AAATTAACCA
* * *
32210320 TTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATATATATACCT
1 TTATTAGTAGGTTTAGCTTCATTTAAGTCATGCATATATATATATACAT
*
32210369 TTATTAGTAGGTTTAGCTTCATTTAAGTCATGCATATATATATTAATGCAT
1 TTATTAGTAGGTTTAGCTTCATTTAAGTCATGCATATATATA-T-ATACAT
* * *
32210420 ATA-TA-TACTGTTTAGCTTCATTTAAGTCATGCACATATATATATTA-AT
1 TTATTAGTA-GGTTTAGCTTCATTTAAGTCATGCATATATATATA-TACAT
* *** *
32210468 GCATATATA-TCCATTTAGCTTCGTTTAAGTCATGCATATATATTATATA
1 --TTAT-TAGTAGGTTTAGCTTCATTTAAGTCATGCATATATA-TATATA
32210517 TATTATAAAA
Statistics
Matches: 126, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
48 3 0.02
49 44 0.35
50 37 0.29
51 35 0.28
52 7 0.06
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44
Consensus pattern (49 bp):
TTATTAGTAGGTTTAGCTTCATTTAAGTCATGCATATATATATATACAT
Found at i:32210515 original size:52 final size:51
Alignment explanation
Indices: 32210380--32210510 Score: 205
Period size: 52 Copynumber: 2.6 Consensus size: 51
32210370 TATTAGTAGG
**
32210380 TTTAGCTTCATTTAAGTCATGC-ATATATATATTAATGCATATATATACTG
1 TTTAGCTTCATTTAAGTCATGCAATATATATATTAATGCATATATATACCA
32210430 TTTAGCTTCATTTAAGTCATGCACATATATATATTAATGCATATATAT-CCA
1 TTTAGCTTCATTTAAGTCATGCA-ATATATATATTAATGCATATATATACCA
*
32210481 TTTAGCTTCGTTTAAGTCATGC-ATATATAT
1 TTTAGCTTCATTTAAGTCATGCAATATATAT
32210511 TATATATATT
Statistics
Matches: 76, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
49 8 0.11
50 22 0.29
51 22 0.29
52 24 0.32
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.44
Consensus pattern (51 bp):
TTTAGCTTCATTTAAGTCATGCAATATATATATTAATGCATATATATACCA
Found at i:32214312 original size:21 final size:22
Alignment explanation
Indices: 32214288--32214330 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32214278 TTACATGTAA
* *
32214288 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
32214309 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
32214331 ACTTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:32217845 original size:3 final size:3
Alignment explanation
Indices: 32217832--32217866 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
32217822 GAAGATGCAA
*
32217832 ATG AGG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
32217867 AGTCACTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
ATG
Found at i:32220841 original size:880 final size:880
Alignment explanation
Indices: 32219139--32220899 Score: 3371
Period size: 880 Copynumber: 2.0 Consensus size: 880
32219129 CTGTGCAAGA
*
32219139 CACATGTATACAAACTGGAGGAAAGAGCACAGGGGGTGGTGATTTATAGAAACTATTTTGGGCTT
1 CACATGTATACAAACTGGAGGAAAGAGCACAAGGGGTGGTGATTTATAGAAACTATTTTGGGCTT
*
32219204 GTTGAAAGTCAACAACTAAAGGTCTCTTTCAAAAATATACTACAAGAATTGGTTAGTTAAAGAAA
66 GTTGAAAGTCAACAACTAAAGGTCTCTTTCAAAAATATACTACAAGAATTAGTTAGTTAAAGAAA
32219269 GTTGCTTTGGAAAGTTTGATGAGGAAGGAACCAAAAAGCTTTTTTCAACACTTATTCAAAGTGTG
131 GTTGCTTTGGAAAGTTTGATGAGGAAGGAACCAAAAAGCTTTTTTCAACACTTATTCAAAGTGTG
*
32219334 ATGCGATCAATAACAACTTCGGTGAGGCCTTCAACTTCACACTTGTGAGAACTAGGTTTAAATCT
196 ATGCGATCAATAACAACTTCGGTGAGGCCTTCAACTTCACACTTGTGACAACTAGGTTTAAATCT
32219399 ATCATTTCTTTGTTTGAGGATATTAGACACTACGTCATGAATAGGGTAATGTAAAATAAGAAAAA
261 ATCATTTCTTTGTTTGAGGATATTAGACACTACGTCATGAATAGGGTAATGTAAAATAAGAAAAA
32219464 AGTGTGAAGATTGGTCCCCTGATTTATTCTAAAAAGTAAGTAAAAAAATTGAAGAACATAAATAT
326 AGTGTGAAGATTGGTCCCCTGATTTATTCTAAAAAGTAAGTAAAAAAATTGAAGAACATAAATAT
32219529 TTAAGTTATTACTATCATGTGTGTTGGAATGGGCAAGATGGTTATGAGGTTGACTATAATAGGGA
391 TTAAGTTATTACTATCATGTGTGTTGGAATGGGCAAGATGGTTATGAGGTTGACTATAATAGGGA
*
32219594 TACTTATGTTGTAGATGTTAGGGGTTGAAATTGTGCATGTATATCTTGGGATCTAACAGGCATGT
456 TACTTATGTTGTAGATGTTAGGGGTGGAAATTGTGCATGTATATCTTGGGATCTAACAGGCATGT
*
32219659 AGATGTTAGAGGTTGTATCTAAAATTTTGTTTAGAGAACAAATAGTTGAAGAATATGTAAGTGAC
521 AGATGTTAGAGGCTGTATCTAAAATTTTGTTTAGAGAACAAATAGTTGAAGAATATGTAAGTGAC
*
32219724 TATTACAAAAGGGATACGTACAAAATGTTGTACAATTGTACACTTTCCACTATCTCAAGTGAGAA
586 TATTACAAAAGGGATACGTACAAAATGTTGTACAATTGTACACTTTCCACTATCCCAAGTGAGAA
* *
32219789 TTTCTAGAAAGACACTAGAATGGGGCTGATCAATCCCTCTTTGAAAAAGAAAGCTTCCTAGAATA
651 TTTCTAGAAAGACACTAGAATGGGACTGATCAATCCCTCTTTGAAAAAGAAAGCTCCCTAGAATA
32219854 CCCAAACATAAAAGAAAAAGAGAAGAGGGTGAGACATCAAATAGAAGAAAGCTATCCAAAAGAGG
716 CCCAAACATAAAAGAAAAAGAGAAGAGGGTGAGACATCAAATAGAAGAAAGCTATCCAAAAGAGG
*
32219919 AATCAAAATGACTGTCAAAGATGCGAGATGGTTGGTAATAACTCTAGAACCTGTCCAGCTTAAAA
781 AATCAAAATGACTGTCAAAGATGCGAGATGGTTGGCAATAACTCTAGAACCTGTCCAGCTTAAAA
32219984 TACACCAGTAAGTCTATTTCAAACTTCTTATTTTC
846 TACACCAGTAAGTCTATTTCAAACTTCTTATTTTC
32220019 CACATGTATACAAACTGGAGGAAAGAGCACAAGGGGTGGTGATTTATAGAAACTATTTTGGGCTT
1 CACATGTATACAAACTGGAGGAAAGAGCACAAGGGGTGGTGATTTATAGAAACTATTTTGGGCTT
*
32220084 GTTGAAAGTCAACAATTAAAGGTCTCTTTCAAAAATATACTACAAGAATTAGTTAGTTAAAGAAA
66 GTTGAAAGTCAACAACTAAAGGTCTCTTTCAAAAATATACTACAAGAATTAGTTAGTTAAAGAAA
32220149 GTTGCTTTGGAAAGTTTGATGAGGAAGGAACCAAAAAGCTTTTTTCAACACTTATTCAAAGTGTG
131 GTTGCTTTGGAAAGTTTGATGAGGAAGGAACCAAAAAGCTTTTTTCAACACTTATTCAAAGTGTG
* *
32220214 ATGTGATCAATAACAACTTCGGTGAGGCCTTCAACTTCGCACTTGTGACAACTAGGTTTAAATCT
196 ATGCGATCAATAACAACTTCGGTGAGGCCTTCAACTTCACACTTGTGACAACTAGGTTTAAATCT
32220279 ATCATTTCTTTGTTTGAGGATATTAGACACTACGTCATGAATAGGGTAATGTAAAATAAGAAAAA
261 ATCATTTCTTTGTTTGAGGATATTAGACACTACGTCATGAATAGGGTAATGTAAAATAAGAAAAA
32220344 AGTGTGAAGATTGGTCCCCTGATTTATTCTAAAAAGTAAGTAAAAAAATTGAAGAACATAAATAT
326 AGTGTGAAGATTGGTCCCCTGATTTATTCTAAAAAGTAAGTAAAAAAATTGAAGAACATAAATAT
32220409 TTAAGTTATTACTATCATGTGTGTTGGAATGGGCAAGATGGTTATGAGGTTGACTATAATAGGGA
391 TTAAGTTATTACTATCATGTGTGTTGGAATGGGCAAGATGGTTATGAGGTTGACTATAATAGGGA
32220474 TACTTATGTTGTAGATGTTAGGGGCTGGAAA-TGTGCATGTATATCTTGGGATCTAACAGGCATG
456 TACTTATGTTGTAGATGTTAGGGG-TGGAAATTGTGCATGTATATCTTGGGATCTAACAGGCATG
32220538 TAGATGTTAGAGGCTGTATCTAAAATTTTGTTTAGAGAACAAATAGTTGAAGAATATGTAAGTGA
520 TAGATGTTAGAGGCTGTATCTAAAATTTTGTTTAGAGAACAAATAGTTGAAGAATATGTAAGTGA
*
32220603 CTATTACAAAATGGATACGTACAAAATGTTGTACAATTGTACACTTTCCACTATCCCAAGTGAGA
585 CTATTACAAAAGGGATACGTACAAAATGTTGTACAATTGTACACTTTCCACTATCCCAAGTGAGA
32220668 ATTTCTAGAAAGACACTAGAATGGGACTGATCAATCCCTCTTTGAAAAAGAAAGCTCCCTAGAAT
650 ATTTCTAGAAAGACACTAGAATGGGACTGATCAATCCCTCTTTGAAAAAGAAAGCTCCCTAGAAT
*
32220733 ACCCAAACATAAAAGAAGAAGAGAAGAGGGTGAGACATCAAATAGAAGAAAGCTATCCAAAAGAG
715 ACCCAAACATAAAAGAAAAAGAGAAGAGGGTGAGACATCAAATAGAAGAAAGCTATCCAAAAGAG
32220798 GAATCAAAATGACTGTCAAAGATGCGAGATGGTTGGCAATAACTCTAGAACCTGTCCAGCTTAAA
780 GAATCAAAATGACTGTCAAAGATGCGAGATGGTTGGCAATAACTCTAGAACCTGTCCAGCTTAAA
*
32220863 ATACACCAGTAAGTCTATTTCAAATTTCTTATTTTC
845 ATACACCAGTAAGTCTATTTCAAACTTCTTATTTTC
32220899 C
1 C
32220900 TTTATACATG
Statistics
Matches: 865, Mismatches: 15, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
880 860 0.99
881 5 0.01
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (880 bp):
CACATGTATACAAACTGGAGGAAAGAGCACAAGGGGTGGTGATTTATAGAAACTATTTTGGGCTT
GTTGAAAGTCAACAACTAAAGGTCTCTTTCAAAAATATACTACAAGAATTAGTTAGTTAAAGAAA
GTTGCTTTGGAAAGTTTGATGAGGAAGGAACCAAAAAGCTTTTTTCAACACTTATTCAAAGTGTG
ATGCGATCAATAACAACTTCGGTGAGGCCTTCAACTTCACACTTGTGACAACTAGGTTTAAATCT
ATCATTTCTTTGTTTGAGGATATTAGACACTACGTCATGAATAGGGTAATGTAAAATAAGAAAAA
AGTGTGAAGATTGGTCCCCTGATTTATTCTAAAAAGTAAGTAAAAAAATTGAAGAACATAAATAT
TTAAGTTATTACTATCATGTGTGTTGGAATGGGCAAGATGGTTATGAGGTTGACTATAATAGGGA
TACTTATGTTGTAGATGTTAGGGGTGGAAATTGTGCATGTATATCTTGGGATCTAACAGGCATGT
AGATGTTAGAGGCTGTATCTAAAATTTTGTTTAGAGAACAAATAGTTGAAGAATATGTAAGTGAC
TATTACAAAAGGGATACGTACAAAATGTTGTACAATTGTACACTTTCCACTATCCCAAGTGAGAA
TTTCTAGAAAGACACTAGAATGGGACTGATCAATCCCTCTTTGAAAAAGAAAGCTCCCTAGAATA
CCCAAACATAAAAGAAAAAGAGAAGAGGGTGAGACATCAAATAGAAGAAAGCTATCCAAAAGAGG
AATCAAAATGACTGTCAAAGATGCGAGATGGTTGGCAATAACTCTAGAACCTGTCCAGCTTAAAA
TACACCAGTAAGTCTATTTCAAACTTCTTATTTTC
Found at i:32228762 original size:18 final size:18
Alignment explanation
Indices: 32228741--32228775 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32228731 AAATTCATTT
*
32228741 TATTTTTTAAATAAATTA
1 TATTATTTAAATAAATTA
*
32228759 TATTATTTATATAAATT
1 TATTATTTAAATAAATT
32228776 TTTTAATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTATTTAAATAAATTA
Found at i:32228773 original size:22 final size:22
Alignment explanation
Indices: 32228731--32228774 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32228721 TTTTGCAGTC
* *
32228731 AAATTCATTTTATTTTTTAAAT
1 AAATTCATATTATTTTATAAAT
32228753 AAATT-ATATTATTTATATAAAT
1 AAATTCATATTATTT-TATAAAT
32228775 TTTTTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
AAATTCATATTATTTTATAAAT
Found at i:32229472 original size:47 final size:48
Alignment explanation
Indices: 32229407--32229505 Score: 146
Period size: 47 Copynumber: 2.1 Consensus size: 48
32229397 TTGAATATTT
* * * * *
32229407 TATGGAAAATAGATAATCAAATATAG-GAAAGGAAAGAGAATAACATA
1 TATGAAAAATAGAGAATCAAATATAGAAAAAGAAAAGAGAATAACAGA
32229454 TATGAAAAATAGAGAATCAAATATAGAAAAAGAAAAGAGAATAACAGA
1 TATGAAAAATAGAGAATCAAATATAGAAAAAGAAAAGAGAATAACAGA
32229502 TATG
1 TATG
32229506 GAAATATGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 24 0.52
48 22 0.48
ACGTcount: A:0.60, C:0.04, G:0.18, T:0.18
Consensus pattern (48 bp):
TATGAAAAATAGAGAATCAAATATAGAAAAAGAAAAGAGAATAACAGA
Found at i:32229477 original size:23 final size:23
Alignment explanation
Indices: 32229407--32229484 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
32229397 TTGAATATTT
* *
32229407 TATGGAAAATAGATAATCAAATA
1 TATGAAAAATAGAGAATCAAATA
*
32229430 TAGGAAAGGAA-AGAGAAT-AACATA
1 TATGAAA--AATAGAGAATCAA-ATA
32229454 TATGAAAAATAGAGAATCAAATA
1 TATGAAAAATAGAGAATCAAATA
32229477 TA-GAAAAA
1 TATGAAAAA
32229485 GAAAAGAGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
22 8 0.17
23 19 0.41
24 17 0.37
25 2 0.04
ACGTcount: A:0.60, C:0.04, G:0.17, T:0.19
Consensus pattern (23 bp):
TATGAAAAATAGAGAATCAAATA
Found at i:32234384 original size:29 final size:29
Alignment explanation
Indices: 32234328--32234384 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
32234318 TTATGGAAGA
* ** * *
32234328 GATGGAGAACTTGTTTGTTGAGAGTTCGC
1 GATGAAGAACTTGTTCATTAAGAATTCGC
32234357 GATGAAGAACTTGTTCATTAAGAATTCG
1 GATGAAGAACTTGTTCATTAAGAATTCG
32234385 TGTCAAGGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTAAGAATTCGC
Found at i:32237828 original size:22 final size:22
Alignment explanation
Indices: 32237797--32237842 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
32237787 TGGGTTTCGA
*
32237797 ATTTTGTTTGGTTATCATTATT
1 ATTTTATTTGGTTATCATTATT
* *
32237819 ATTTTATTTGTTTATTATTATT
1 ATTTTATTTGGTTATCATTATT
32237841 AT
1 AT
32237843 GGATAATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.67
Consensus pattern (22 bp):
ATTTTATTTGGTTATCATTATT
Found at i:32240920 original size:35 final size:35
Alignment explanation
Indices: 32240874--32240969 Score: 156
Period size: 35 Copynumber: 2.7 Consensus size: 35
32240864 TTCTGTTGAT
*
32240874 ATTCTAATTCGCATGTTAAGCATGCCATTATACTG
1 ATTCTGATTCGCATGTTAAGCATGCCATTATACTG
32240909 ATTCTGATTCGCATGTTAAGCATGCCATTATACTG
1 ATTCTGATTCGCATGTTAAGCATGCCATTATACTG
* * *
32240944 GTTTTGATTCGCATGTAAAGCATGCC
1 ATTCTGATTCGCATGTTAAGCATGCC
32240970 TACAAAAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (35 bp):
ATTCTGATTCGCATGTTAAGCATGCCATTATACTG
Found at i:32241817 original size:19 final size:20
Alignment explanation
Indices: 32241767--32241817 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
32241757 CGTTAAACTC
*
32241767 AACTCAACAATCGTTATTTCA
1 AACTCAAC-ATCATTATTTCA
*
32241788 AACTCAGAACATCATT-TTTGA
1 AACTC--AACATCATTATTTCA
32241809 AACTCAACA
1 AACTCAACA
32241818 CTATCTGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 4 0.15
21 14 0.54
22 5 0.19
23 3 0.12
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (20 bp):
AACTCAACATCATTATTTCA
Found at i:32243175 original size:30 final size:31
Alignment explanation
Indices: 32243139--32243200 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
32243129 TATCAGTACA
* *
32243139 GTGTGGGCCTTAGCCCATTAGAGTAA-CAGT
1 GTGTGGGCCTTAGCCCAGTACAGTAATCAGT
32243169 GTGTGGGCCTTAGCCCAGTACAGTAATCAGT
1 GTGTGGGCCTTAGCCCAGTACAGTAATCAGT
32243200 G
1 G
32243201 CAATGCAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.26
Consensus pattern (31 bp):
GTGTGGGCCTTAGCCCAGTACAGTAATCAGT
Found at i:32243359 original size:26 final size:26
Alignment explanation
Indices: 32243305--32243360 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
32243295 ACACCAATAT
* * *
32243305 CGCAGCAAAGCTGCCAGTAATAGTGA
1 CGCAACAAAGCTGCCAGTAACAGTAA
* *
32243331 CGCAACAAAGCTTCCAGTAACATTAA
1 CGCAACAAAGCTGCCAGTAACAGTAA
32243357 CGCA
1 CGCA
32243361 GAAAAGATGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.27, G:0.20, T:0.16
Consensus pattern (26 bp):
CGCAACAAAGCTGCCAGTAACAGTAA
Found at i:32243578 original size:27 final size:26
Alignment explanation
Indices: 32243548--32243743 Score: 148
Period size: 27 Copynumber: 7.3 Consensus size: 26
32243538 GGTATAACAG
*
32243548 TCATTTTACCCAATGGAGGTATTTCGA
1 TCATTTTACCC-TTGGAGGTATTTCGA
*
32243575 TCATTTTACCTTTCAGG-GGTATTTCGA
1 TCATTTTACCCTT--GGAGGTATTTCGA
*
32243602 TCATTTTA-CCTTCGGGGGTATTTC-A
1 TCATTTTACCCTT-GGAGGTATTTCGA
* *
32243627 GTCATTTTACCCTTCGAGTGTATTTTGA
1 -TCATTTTACCCTTGGAG-GTATTTCGA
* * *
32243655 TCATTTTACACTTTGAGGGTATTTCAA
1 TCATTTTACCCTTGGA-GGTATTTCGA
* *
32243682 TCATTTTACCATTCGAGGATATTTC-A
1 TCATTTTACCCTTGGAGG-TATTTCGA
* * * *
32243708 GTTATTTTACCCTTCGAGGGTATTTTGG
1 -TCATTTTACCCTTGGA-GGTATTTCGA
32243736 TCATTTTA
1 TCATTTTA
32243744 TCATGAATCG
Statistics
Matches: 138, Mismatches: 19, Indels: 24
0.76 0.10 0.13
Matches are distributed among these distances:
25 3 0.02
26 25 0.18
27 104 0.75
28 6 0.04
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.44
Consensus pattern (26 bp):
TCATTTTACCCTTGGAGGTATTTCGA
Found at i:32243733 original size:81 final size:80
Alignment explanation
Indices: 32243545--32243743 Score: 267
Period size: 80 Copynumber: 2.5 Consensus size: 80
32243535 AGGGGTATAA
* * * *
32243545 CAGTCATTTTACCCAATGGA-GGTATTTCGATCATTTTACCTTTCAGGGGTATTTCGATCATTTT
1 CAGTCATTTTACCC-TTCGAGGGTATTTTGATCATTTTACCTTTCAGGGGTATTTCAATCATTTT
* *
32243609 ACCTTCGGGGGTATTT
65 ACCTTCGAGGATATTT
* *
32243625 CAGTCATTTTACCCTTCGAGTGTATTTTGATCATTTTACACTTTGA-GGGTATTTCAATCATTTT
1 CAGTCATTTTACCCTTCGAGGGTATTTTGATCATTTTAC-CTTTCAGGGGTATTTCAATCATTTT
32243689 ACCATTCGAGGATATTT
65 ACC-TTCGAGGATATTT
* *
32243706 CAGTTATTTTACCCTTCGAGGGTATTTTGGTCATTTTA
1 CAGTCATTTTACCCTTCGAGGGTATTTTGATCATTTTA
32243744 TCATGAATCG
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 51 0.49
81 51 0.49
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (80 bp):
CAGTCATTTTACCCTTCGAGGGTATTTTGATCATTTTACCTTTCAGGGGTATTTCAATCATTTTA
CCTTCGAGGATATTT
Found at i:32243743 original size:54 final size:53
Alignment explanation
Indices: 32243548--32243732 Score: 196
Period size: 54 Copynumber: 3.5 Consensus size: 53
32243538 GGTATAACAG
* * * * *
32243548 TCATTTTACCCAATGGA-GGTATTTCGATCATTTTACCTTTCAGGGGTATTTCGA
1 TCATTTTACCC-TTCGAGGGTATTTCAATCATTTTACCATTC-GAGGTATTTCGA
* * * *
32243602 TCATTTTA-CCTTCGGGGGTATTTCAGTCATTTTACCCTTCGAGTGTATTTTGA
1 TCATTTTACCCTTCGAGGGTATTTCAATCATTTTACCATTCGAG-GTATTTCGA
* *
32243655 TCATTTTACACTTTGAGGGTATTTCAATCATTTTACCATTCGAGGATATTTC-A
1 TCATTTTACCCTTCGAGGGTATTTCAATCATTTTACCATTCGAGG-TATTTCGA
*
32243708 GTTATTTTACCCTTCGAGGGTATTT
1 -TCATTTTACCCTTCGAGGGTATTT
32243733 TGGTCATTTT
Statistics
Matches: 109, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
52 4 0.04
53 41 0.38
54 64 0.59
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (53 bp):
TCATTTTACCCTTCGAGGGTATTTCAATCATTTTACCATTCGAGGTATTTCGA
Found at i:32247313 original size:20 final size:20
Alignment explanation
Indices: 32247288--32247329 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
32247278 TATGATATTT
32247288 TGACTTGATGAAAATATGAA
1 TGACTTGATGAAAATATGAA
*
32247308 TGACTTGATGAAAATATTAA
1 TGACTTGATGAAAATATGAA
32247328 TG
1 TG
32247330 CGAATGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (20 bp):
TGACTTGATGAAAATATGAA
Found at i:32250450 original size:51 final size:51
Alignment explanation
Indices: 32250391--32250492 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
32250381 GCCATAAAAG
* *
32250391 TATGTCACGTCGTGACCTCAGGCCACTCGATGTCGTAACGTGACTTATTGT
1 TATGTCACGTCGTGACCTCAGGCCACTCGATGTCGCAACGTGACTCATTGT
*
32250442 TATGTCACGTCGTGACCTCAGGCCACTTGATGTCGCAACGTGACTCATTGT
1 TATGTCACGTCGTGACCTCAGGCCACTCGATGTCGCAACGTGACTCATTGT
32250493 CAACCGACGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (51 bp):
TATGTCACGTCGTGACCTCAGGCCACTCGATGTCGCAACGTGACTCATTGT
Found at i:32255529 original size:40 final size:40
Alignment explanation
Indices: 32255392--32255522 Score: 205
Period size: 39 Copynumber: 3.3 Consensus size: 40
32255382 ACATAGCTTN
32255392 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTC
32255431 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTC
* * *
32255470 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAGTC
32255510 CCGAAGGCATTTG
1 CCGAAGGCATTTG
32255523 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
38 2 0.02
39 70 0.81
40 14 0.16
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTC
Found at i:32257029 original size:26 final size:26
Alignment explanation
Indices: 32256999--32257049 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32256989 AGCACTAGTC
*
32256999 CATTCAATTATTAATTTCAATAACAA
1 CATTCAAATATTAATTTCAATAACAA
* *
32257025 CATTCAAATATTCATTTCATTAACA
1 CATTCAAATATTAATTTCAATAACA
32257050 GAAAAATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (26 bp):
CATTCAAATATTAATTTCAATAACAA
Found at i:32258162 original size:20 final size:20
Alignment explanation
Indices: 32258134--32258176 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
32258124 AACAAAAATG
*
32258134 AAAATAGGATTAAATTTTCT
1 AAAAAAGGATTAAATTTTCT
32258154 AAAAAAGGATTAAATTTTCT
1 AAAAAAGGATTAAATTTTCT
32258174 AAA
1 AAA
32258177 CCTGACAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (20 bp):
AAAAAAGGATTAAATTTTCT
Found at i:32258855 original size:20 final size:20
Alignment explanation
Indices: 32258827--32258879 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
32258817 GATAGAGGAA
*
32258827 CAAATGTGCAATCAGAGGCAT
1 CAAA-GTGCAATCAGAGGCAC
* * *
32258848 CGAAGTGCAAACAGGGGCAC
1 CAAAGTGCAATCAGAGGCAC
32258868 CAAAGTGCAATC
1 CAAAGTGCAATC
32258880 CTATACAAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.13
Consensus pattern (20 bp):
CAAAGTGCAATCAGAGGCAC
Found at i:32260423 original size:79 final size:78
Alignment explanation
Indices: 32260321--32260544 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
32260311 GCTCCTCGTT
* *
32260321 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
32260386 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
32260401 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
32260465 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
32260479 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
32260543 GA
63 GA
32260545 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 36 0.29
79 56 0.44
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:32260438 original size:39 final size:40
Alignment explanation
Indices: 32260321--32260544 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
32260311 GCTCCTCGTT
* *
32260321 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
32260361 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
32260401 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
32260440 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
32260479 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
32260520 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32260545 CATCATTCAA
Statistics
Matches: 166, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 77 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:32268246 original size:40 final size:40
Alignment explanation
Indices: 32268198--32268321 Score: 248
Period size: 40 Copynumber: 3.1 Consensus size: 40
32268188 GGACTTAACT
32268198 GGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCC
1 GGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCC
32268238 GGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCC
1 GGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCC
32268278 GGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCC
1 GGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCC
32268318 GGAT
1 GGAT
32268322 ATTGTCACTT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (40 bp):
GGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCC
Found at i:32273330 original size:4 final size:4
Alignment explanation
Indices: 32273321--32273397 Score: 127
Period size: 4 Copynumber: 19.2 Consensus size: 4
32273311 AACATGCTCA
* *
32273321 ACAT ACAT ACAT ACAT AAAT ACAT ACAT AAAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
32273369 ACAT AAAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
32273398 TCTATCACAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 67 1.00
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:32273576 original size:17 final size:17
Alignment explanation
Indices: 32273554--32273587 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32273544 GCCCATGTTG
32273554 TATGCC-ATGTGGGCCCA
1 TATGCCAATGT-GGCCCA
32273571 TATGCCAATGTGGCCCA
1 TATGCCAATGTGGCCCA
32273588 CACGGCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (17 bp):
TATGCCAATGTGGCCCA
Found at i:32287246 original size:17 final size:18
Alignment explanation
Indices: 32287226--32287260 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
32287216 CAAATGTTTC
32287226 CCATTTC-TCCATTTTTA
1 CCATTTCATCCATTTTTA
32287243 CCATTTCTATCCATTTTT
1 CCATTTC-ATCCATTTTT
32287261 TTCATTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.17, C:0.29, G:0.00, T:0.54
Consensus pattern (18 bp):
CCATTTCATCCATTTTTA
Found at i:32297269 original size:21 final size:21
Alignment explanation
Indices: 32297227--32297275 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
32297217 GAAATTTGGT
* *
32297227 CACACCACCGTGTATCTCAGC
1 CACACGACCATGTATCTCAGC
* *
32297248 CACACGACCATGTCTCTGAGC
1 CACACGACCATGTATCTCAGC
*
32297269 CATACGA
1 CACACGA
32297276 ATGTGTACCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.39, G:0.16, T:0.18
Consensus pattern (21 bp):
CACACGACCATGTATCTCAGC
Found at i:32300894 original size:21 final size:21
Alignment explanation
Indices: 32300870--32300917 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
32300860 GTCATACGAC
32300870 CGTGTATCTCAACCACA-AGGT
1 CGTGTATCTCAACCACACA-GT
* * *
32300891 CGTGTCTCTTAGCCACACAGT
1 CGTGTATCTCAACCACACAGT
32300912 CGTGTA
1 CGTGTA
32300918 CCCCTGTCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (21 bp):
CGTGTATCTCAACCACACAGT
Found at i:32306689 original size:35 final size:35
Alignment explanation
Indices: 32306632--32306748 Score: 126
Period size: 35 Copynumber: 3.3 Consensus size: 35
32306622 ACAAGCCCCC
* **
32306632 AAACACACGAGATGCTTGTAAGAGCCAATCCATCCG
1 AAACACACCA-ATGCTCATAAGAGCCAATCCATCCG
* *
32306668 AAACACACCAATGCTCATAAGAGCCAATCCCTCCA
1 AAACACACCAATGCTCATAAGAGCCAATCCATCCG
* * ** * *
32306703 AAACACATCAATGCTCATAAAAGATAGTCCAACCG
1 AAACACACCAATGCTCATAAGAGCCAATCCATCCG
32306738 AAACACACCAA
1 AAACACACCAA
32306749 AATAGACAGT
Statistics
Matches: 67, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
35 58 0.87
36 9 0.13
ACGTcount: A:0.43, C:0.31, G:0.12, T:0.15
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCCAATCCATCCG
Found at i:32307617 original size:45 final size:45
Alignment explanation
Indices: 32307560--32307774 Score: 279
Period size: 45 Copynumber: 4.8 Consensus size: 45
32307550 GCTGTTACAA
* *
32307560 GTATAATGCCATAGTGTCTTTCAACTATGGTCTCATTCATTTTCG
1 GTATAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCG
* * * *
32307605 ATGTAGTGCCATAGTGTCATTCATCTATGGTCTTATTCATTTTCG
1 GTATAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCG
* * *
32307650 GTATAGTGCCATAATGCCTTTCAACTATGGTCTTATTTATTTTCG
1 GTATAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCG
* * **
32307695 GTATATTTCTGTAGTGTCTTTCAACTATGGTCTTATTCA-TTTCTG
1 GTATAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTC-G
* *
32307740 GTACAGTGCCATAGTGTCTTTCAACTATTGTCTTA
1 GTATAGTGCCATAGTGTCTTTCAACTATGGTCTTA
32307775 ACCGTTTGAT
Statistics
Matches: 143, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
44 4 0.03
45 139 0.97
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.45
Consensus pattern (45 bp):
GTATAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCG
Found at i:32311539 original size:9 final size:9
Alignment explanation
Indices: 32311525--32311555 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32311515 GTTAAACGAA
32311525 TCGAGTTAT
1 TCGAGTTAT
*
32311534 TCGAGTTAA
1 TCGAGTTAT
32311543 TCGAGTTAT
1 TCGAGTTAT
32311552 TCGA
1 TCGA
32311556 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:32311626 original size:9 final size:9
Alignment explanation
Indices: 32311609--32311645 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32311599 TGAGTTTTCG
32311609 AATTCGAAT
1 AATTCGAAT
*
32311618 AACTCGAAT
1 AATTCGAAT
32311627 AATTCGAAT
1 AATTCGAAT
32311636 AATTCGAAT
1 AATTCGAAT
32311645 A
1 A
32311646 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:32311889 original size:30 final size:31
Alignment explanation
Indices: 32311855--32311914 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
32311845 AAACCTTTTA
*
32311855 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
32311885 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
32311915 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:32313395 original size:50 final size:50
Alignment explanation
Indices: 32313330--32313429 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
32313320 TACTTTTCTG
32313330 ATAAATTTTATTATAAGCGAATTCGGCTAAAGGTAGAAAGTTTTCCCAAT
1 ATAAATTTTATTATAAGCGAATTCGGCTAAAGGTAGAAAGTTTTCCCAAT
32313380 ATAAATTTTATTATAAGCGAATTCGGCTAAAGGTAGAAAGTTTTCCCAAT
1 ATAAATTTTATTATAAGCGAATTCGGCTAAAGGTAGAAAGTTTTCCCAAT
32313430 TACCTTCAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (50 bp):
ATAAATTTTATTATAAGCGAATTCGGCTAAAGGTAGAAAGTTTTCCCAAT
Found at i:32319909 original size:29 final size:30
Alignment explanation
Indices: 32319865--32319925 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
32319855 GAGAGGTGGG
*
32319865 ATGGGAAGGGAATAAAAGTTTT-AGGGAAAA
1 ATGGGAAGGGAATAAAAATTTTGA-GGAAAA
*
32319895 ATGGG-AGGGAGTAAAAATTTTGAGGAAAA
1 ATGGGAAGGGAATAAAAATTTTGAGGAAAA
32319924 AT
1 AT
32319926 AAAAGGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.21
Consensus pattern (30 bp):
ATGGGAAGGGAATAAAAATTTTGAGGAAAA
Found at i:32320634 original size:30 final size:31
Alignment explanation
Indices: 32320589--32320647 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 31
32320579 TCTGAACTTT
32320589 GGGACAAAAATGTAAT-TATG-CAAAAGTTTA
1 GGGACAAAAATGTAATGT-TGTCAAAAGTTTA
32320619 GGGAC-AAAATCGTAATGTTGTCAAAAGTT
1 GGGACAAAAAT-GTAATGTTGTCAAAAGTT
32320648 GAGTCGAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 5 0.19
30 12 0.46
31 9 0.35
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.27
Consensus pattern (31 bp):
GGGACAAAAATGTAATGTTGTCAAAAGTTTA
Found at i:32335411 original size:16 final size:16
Alignment explanation
Indices: 32335390--32335457 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
32335380 TTTGGTTCGC
32335390 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
32335406 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
32335422 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
32335438 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
32335454 TGTA
1 TGTA
32335458 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:32335725 original size:17 final size:17
Alignment explanation
Indices: 32335685--32335824 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
32335675 AACATAATTA
32335685 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
*
32335699 TT-TTATAATATATAAT
1 TTATTAAAATATATAAT
32335715 TTGA-TAAAATATATGAAT
1 TT-ATTAAAATATAT-AAT
32335733 TTATTAAAAT-TATAAT
1 TTATTAAAATATATAAT
* * *
32335749 ATA-TAATATTATAAAAT
1 TTATTAA-AATATATAAT
* *
32335766 ATAATTTAAAATA-ATTA-
1 -TTA-TTAAAATATATAAT
32335783 TTATT--AA-ATATAAT
1 TTATTAAAATATATAAT
**
32335797 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
*
32335815 TTAATAAAAT
1 TTATTAAAAT
32335825 TCTTAGTATT
Statistics
Matches: 92, Mismatches: 16, Indels: 33
0.65 0.11 0.23
Matches are distributed among these distances:
12 1 0.01
13 7 0.08
14 11 0.12
15 6 0.07
16 12 0.13
17 26 0.28
18 23 0.25
19 3 0.03
20 3 0.03
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:32335752 original size:24 final size:22
Alignment explanation
Indices: 32335722--32335770 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
32335712 AATTTGATAA
32335722 AATATATGAAT-TTATTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
32335746 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
32335768 AAT
1 AAT
32335771 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:32335761 original size:15 final size:15
Alignment explanation
Indices: 32335741--32335796 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
32335731 ATTTATTAAA
*
32335741 ATTATAATATATAAT
1 ATTATAAAATATAAT
32335756 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
32335769 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
32335782 ATTATTAAATATAAT
1 ATTATAAAATATAAT
32335797 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:32335763 original size:41 final size:39
Alignment explanation
Indices: 32335701--32335888 Score: 115
Period size: 41 Copynumber: 4.7 Consensus size: 39
32335691 AATATATTTT
32335701 TTATAATATATAAT-TTGATAAAATATATGAATTTATTAAAA
1 TTATAATATATAATATT-ATAAAATATAT-AATTTA-TAAAA
*
32335742 TTATAATATATAATATTAT-AAA-ATATAATTTAAAATAA
1 TTATAATATATAATATTATAAAATATATAATTTATAA-AA
* *
32335780 TTATTATTAAATATAAT-TTAACAAAAATATATAATTTAATAAAA
1 TTA-TA--ATATATAATATT-A-TAAAATATATAATTT-ATAAAA
* * *
32335824 TTCTTAGTAT-TAAATATTCT----TATATGAATTTACTAAAA
1 TT-ATAATATAT-AATATTATAAAATATAT-AATTTA-TAAAA
* *
32335862 TCATAATATATAATACTATAAAATATA
1 TTATAATATATAATATTATAAAATATA
32335889 ATCTAAAATA
Statistics
Matches: 113, Mismatches: 14, Indels: 40
0.68 0.08 0.24
Matches are distributed among these distances:
37 19 0.17
38 23 0.20
39 6 0.05
40 5 0.04
41 30 0.27
42 7 0.06
43 5 0.04
44 15 0.13
45 3 0.03
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (39 bp):
TTATAATATATAATATTATAAAATATATAATTTATAAAA
Found at i:32335791 original size:26 final size:25
Alignment explanation
Indices: 32335751--32335813 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
32335741 ATTATAATAT
32335751 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
32335776 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
32335803 AAAATA-TATAA
1 ATAATATTATAA
32335814 TTTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:32343892 original size:20 final size:20
Alignment explanation
Indices: 32343869--32343907 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32343859 CCGTAGTAAT
*
32343869 TGGGATGAAGCAACAAAGGC
1 TGGGATAAAGCAACAAAGGC
32343889 TGGGATAAAGCAACAAAGG
1 TGGGATAAAGCAACAAAGG
32343908 GGGTATGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.13, G:0.33, T:0.10
Consensus pattern (20 bp):
TGGGATAAAGCAACAAAGGC
Found at i:32348363 original size:3 final size:3
Alignment explanation
Indices: 32348355--32348382 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32348345 AGACAAATGG
32348355 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
32348383 AGGAAAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:32349440 original size:17 final size:18
Alignment explanation
Indices: 32349420--32349479 Score: 50
Period size: 20 Copynumber: 3.2 Consensus size: 18
32349410 TCTCCTCCTT
32349420 TTCTTCTTTTCTTT-TTC
1 TTCTTCTTTTCTTTATTC
* * * *
32349437 TTCTCCATTTCTTCTCTTA
1 TTCTTCTTTTCTT-TATTC
32349456 TTCTTCTTTTTCTCTTATTC
1 TTCTTC-TTTTCT-TTATTC
32349476 TTCT
1 TTCT
32349480 ACTGCCCAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 11 0.34
18 1 0.03
19 7 0.22
20 12 0.38
21 1 0.03
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (18 bp):
TTCTTCTTTTCTTTATTC
Found at i:32349442 original size:25 final size:27
Alignment explanation
Indices: 32349399--32349451 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 27
32349389 AGTCCTTCCA
*
32349399 TTTTCTCTTCTTCTCCTCCTTTTCTTC
1 TTTTCTCTTCTTCTCCTCCATTTCTTC
*
32349426 TTTTCT-TT-TTCTTCTCCATTTCTTC
1 TTTTCTCTTCTTCTCCTCCATTTCTTC
32349451 T
1 T
32349452 CTTATTCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 16 0.67
26 2 0.08
27 6 0.25
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (27 bp):
TTTTCTCTTCTTCTCCTCCATTTCTTC
Found at i:32349462 original size:25 final size:25
Alignment explanation
Indices: 32349406--32349463 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
32349396 CCATTTTCTC
* * * *
32349406 TTCTTCTCCTCCTTTTCTTCTTTTC
1 TTCTTCTTCTCCATTTCTTCTCTTA
*
32349431 TTTTTCTTCTCCATTTCTTCTCTTA
1 TTCTTCTTCTCCATTTCTTCTCTTA
32349456 TTCTTCTT
1 TTCTTCTT
32349464 TTTCTCTTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (25 bp):
TTCTTCTTCTCCATTTCTTCTCTTA
Found at i:32358384 original size:23 final size:23
Alignment explanation
Indices: 32358354--32358398 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
32358344 TCCATTTACA
32358354 AGCCCAATTACCTAAACTACCCT
1 AGCCCAATTACCTAAACTACCCT
32358377 AGCCCAATTACCTAAACTACCC
1 AGCCCAATTACCTAAACTACCC
32358399 AGAAGCCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.40, G:0.04, T:0.20
Consensus pattern (23 bp):
AGCCCAATTACCTAAACTACCCT
Found at i:32359572 original size:11 final size:11
Alignment explanation
Indices: 32359544--32359582 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
32359534 TTCTCTTTTT
*
32359544 TTTAATTTTCA
1 TTTAAATTTCA
32359555 CTTTAAATTTCA
1 -TTTAAATTTCA
32359567 TTTAAATTTCAA
1 TTTAAATTTC-A
32359579 TTTA
1 TTTA
32359583 GTCCTCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTAAATTTCA
Found at i:32364529 original size:45 final size:45
Alignment explanation
Indices: 32364458--32364718 Score: 258
Period size: 45 Copynumber: 5.8 Consensus size: 45
32364448 GACACAGTTT
* * *
32364458 GCATGTATTAGTCCACCATATTTATGAATCTTCTTTTATGACTCC
1 GCATGTATGAGTCCACCATATCTATGAATCTTCTTTTATGAATCC
**
32364503 GCATGTATGAGTCCATTATATCTATGAATCTT-TTTCTATGAATCC
1 GCATGTATGAGTCCACCATATCTATGAATCTTCTTT-TATGAATCC
* **
32364548 GCATGTATGAGTCCACCATATCTATAAATCTTCTGCTATGAATCC
1 GCATGTATGAGTCCACCATATCTATGAATCTTCTTTTATGAATCC
* * ** **
32364593 ACATGTATGAGTTCGTCATATCTATGAATCTTC-TACATGAATCC
1 GCATGTATGAGTCCACCATATCTATGAATCTTCTTTTATGAATCC
* * *** *** *
32364637 GCATATACGAGTTTGCCATAT-TCATGAATCTTCTACCATGAAACC
1 GCATGTATGAGTCCACCATATCT-ATGAATCTTCTTTTATGAATCC
* *
32364682 GCATGTATGAGTTCACCATATCTATGAATCTTTTTTT
1 GCATGTATGAGTCCACCATATCTATGAATCTTCTTTT
32364719 GCGAGTTCGC
Statistics
Matches: 177, Mismatches: 34, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
43 1 0.01
44 37 0.21
45 137 0.77
46 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (45 bp):
GCATGTATGAGTCCACCATATCTATGAATCTTCTTTTATGAATCC
Found at i:32364678 original size:89 final size:90
Alignment explanation
Indices: 32364467--32364713 Score: 291
Period size: 89 Copynumber: 2.8 Consensus size: 90
32364457 TGCATGTATT
* ** * * *
32364467 AGTCCACCATATTTATGAATCTTCTTTTATGACTCCGCATGTATGAGTCCATTATATCTATGAAT
1 AGTCCACCATATTCATGAATCTTCTACTATGAATCCGCATGTATGAGTTCATCATATCTATGAAT
* * * *
32364532 CTTTTTCTATGAATCCGCATGTATG
66 CTTCTACTATGAATCCGCATATACG
* * * *
32364557 AGTCCACCATA-TCTATAAATCTTCTGCTATGAATCCACATGTATGAGTTCGTCATATCTATGAA
1 AGTCCACCATATTC-ATGAATCTTCTACTATGAATCCGCATGTATGAGTTCATCATATCTATGAA
32364621 TCTTCTAC-ATGAATCCGCATATACG
65 TCTTCTACTATGAATCCGCATATACG
*** * * *
32364646 AGTTTGCCATATTCATGAATCTTCTACCATGAAACCGCATGTATGAGTTCACCATATCTATGAAT
1 AGTCCACCATATTCATGAATCTTCTACTATGAATCCGCATGTATGAGTTCATCATATCTATGAAT
32364711 CTT
66 CTT
32364714 TTTTTGCGAG
Statistics
Matches: 132, Mismatches: 23, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
89 71 0.54
90 61 0.46
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (90 bp):
AGTCCACCATATTCATGAATCTTCTACTATGAATCCGCATGTATGAGTTCATCATATCTATGAAT
CTTCTACTATGAATCCGCATATACG
Found at i:32369042 original size:41 final size:41
Alignment explanation
Indices: 32368997--32369081 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
32368987 TTTTAATCAC
32368997 TGAGCGTTAATTACCGTTAATAGTGCAACGATAAATTGACG
1 TGAGCGTTAATTACCGTTAATAGTGCAACGATAAATTGACG
32369038 TGAGCGTTAATTACCGTTAATAGTGCAACGATAAATTGACG
1 TGAGCGTTAATTACCGTTAATAGTGCAACGATAAATTGACG
32369079 TGA
1 TGA
32369082 CATATTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (41 bp):
TGAGCGTTAATTACCGTTAATAGTGCAACGATAAATTGACG
Found at i:32370569 original size:20 final size:21
Alignment explanation
Indices: 32370515--32370570 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
32370505 AGAAAAAATT
* *
32370515 ATAAAAATA-AAAGATTTTAG
1 ATAAAAATATAAAAATTCTAG
* *
32370535 AAAAAAATAT-TAAATTCTA-
1 ATAAAAATATAAAAATTCTAG
32370554 ATAAAAATATAAAAATT
1 ATAAAAATATAAAAATT
32370571 AAAATTTATT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (21 bp):
ATAAAAATATAAAAATTCTAG
Found at i:32370845 original size:19 final size:19
Alignment explanation
Indices: 32370822--32370868 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
32370812 ATAATTTTCA
32370822 ATTTTATAAAATTCTATA-
1 ATTTTATAAAATTCTATAT
* * *
32370840 ATTTTTTTATATTTCTATAT
1 A-TTTTATAAAATTCTATAT
32370860 ATTTTATAA
1 ATTTTATAA
32370869 TTTTTTACAA
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
18 1 0.05
19 20 0.91
20 1 0.05
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTATAAAATTCTATAT
Found at i:32370912 original size:10 final size:10
Alignment explanation
Indices: 32370823--32370921 Score: 55
Period size: 10 Copynumber: 10.2 Consensus size: 10
32370813 TAATTTTCAA
*
32370823 TTTTATAAAA
1 TTTTATAAAT
*
32370833 TTCTAT-AAT
1 TTTTATAAAT
* *
32370842 TTTTTTATAT
1 TTTTATAAAT
* *
32370852 TTCTATATA-
1 TTTTATAAAT
32370861 TTTTAT-AAT
1 TTTTATAAAT
32370870 TTTT-TACAAT
1 TTTTATA-AAT
**
32370880 TTTTATATCT
1 TTTTATAAAT
* *
32370890 TTTTTTAATT
1 TTTTATAAAT
32370900 TTTTATAAA-
1 TTTTATAAAT
32370909 TTTTATAATAT
1 TTTTATAA-AT
32370920 TT
1 TT
32370922 GAATTTCTTC
Statistics
Matches: 66, Mismatches: 16, Indels: 13
0.69 0.17 0.14
Matches are distributed among these distances:
8 2 0.03
9 23 0.35
10 37 0.56
11 4 0.06
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:32370912 original size:19 final size:19
Alignment explanation
Indices: 32370861--32370917 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
32370851 TTTCTATATA
*
32370861 TTTTAT-AATTTTTTACAAT
1 TTTTATAAATTTTTTA-ATT
**
32370880 TTTTATATCTTTTTTTAATT
1 TTTTATA-AATTTTTTAATT
*
32370900 TTTTATAAATTTTATAAT
1 TTTTATAAATTTTTTAAT
32370918 ATTTGAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 14 0.47
20 9 0.30
21 7 0.23
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTATAAATTTTTTAATT
Found at i:32391819 original size:70 final size:70
Alignment explanation
Indices: 32391706--32391846 Score: 264
Period size: 70 Copynumber: 2.0 Consensus size: 70
32391696 TTCTTGCATT
*
32391706 TCCTTCGATTTCAAAATCAGTTTTGGTGCTTCTGAATCTTCAGTCTCTGATAGCCGATCAGCCCA
1 TCCTTCGATTTCAAAATCAATTTTGGTGCTTCTGAATCTTCAGTCTCTGATAGCCGATCAGCCCA
32391771 CCAAG
66 CCAAG
*
32391776 TCCTTCGATTTCAAAATCAATTTTGGTGCTTCTGAATCTTCAGTCTCTGATAGCTGATCAGCCCA
1 TCCTTCGATTTCAAAATCAATTTTGGTGCTTCTGAATCTTCAGTCTCTGATAGCCGATCAGCCCA
32391841 CCAAG
66 CCAAG
32391846 T
1 T
32391847 ATATATATGA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.34
Consensus pattern (70 bp):
TCCTTCGATTTCAAAATCAATTTTGGTGCTTCTGAATCTTCAGTCTCTGATAGCCGATCAGCCCA
CCAAG
Found at i:32392966 original size:21 final size:21
Alignment explanation
Indices: 32392942--32393000 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
32392932 CACCATTGTT
* *
32392942 TCTAATTTCACCGTTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
32392963 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
* *
32392984 ACTAATCTCATCGCTAC
1 TCTAATCTCACCGCTAC
32393001 CGTTATTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:32394879 original size:23 final size:23
Alignment explanation
Indices: 32394853--32394898 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
32394843 GATAATAGCC
32394853 AGGGTCATAACAATGATGTTAAA
1 AGGGTCATAACAATGATGTTAAA
32394876 AGGGTCATAACAATGATGTTAAA
1 AGGGTCATAACAATGATGTTAAA
32394899 CAATCTCAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.26
Consensus pattern (23 bp):
AGGGTCATAACAATGATGTTAAA
Found at i:32398956 original size:29 final size:30
Alignment explanation
Indices: 32398891--32398972 Score: 103
Period size: 31 Copynumber: 2.7 Consensus size: 30
32398881 ATATACCAGA
* *
32398891 TTTATACATGAACTATGGTTTAATGTGCAAT
1 TTTATACATGAACTTTGATTT-ATGTGCAAT
*
32398922 TCTATACATGAACTTTGATTT-TGTGCAAT
1 TTTATACATGAACTTTGATTTATGTGCAAT
*
32398951 TTTATACATGAAATTTTGATTT
1 TTTATACATG-AACTTTGATTT
32398973 GATCCAATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 17 0.38
30 10 0.22
31 18 0.40
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.46
Consensus pattern (30 bp):
TTTATACATGAACTTTGATTTATGTGCAAT
Found at i:32398973 original size:29 final size:29
Alignment explanation
Indices: 32398893--32398972 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
32398883 ATACCAGATT
* *
32398893 TATACATGAACTATGGTTTAATGTGCAATTC
1 TATACATGAACTTTGATTT--TGTGCAATTC
*
32398924 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTTTGATTTTGTGCAATTC
*
32398953 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
32398973 GATCCAATTC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 17 0.39
30 10 0.23
31 17 0.39
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTGCAATTC
Found at i:32398981 original size:30 final size:29
Alignment explanation
Indices: 32398893--32398983 Score: 85
Period size: 29 Copynumber: 3.0 Consensus size: 29
32398883 ATACCAGATT
* * *
32398893 TATACATGAACTATGGTTTAATGTGCAATTC
1 TATACATGAACTTTGATTT--TGTCCAATTC
* *
32398924 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTTTGATTTTGTCCAATTC
*
32398953 TATACATGAAATTTTGA-TTTGATCCAATTC
1 TATACATG-AACTTTGATTTTG-TCCAATTC
32398983 T
1 T
32398984 TGTAAATTAT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
29 21 0.40
30 14 0.27
31 17 0.33
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTCCAATTC
Found at i:32401061 original size:40 final size:40
Alignment explanation
Indices: 32401017--32401114 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 40
32401007 GGTATGTCTG
*
32401017 AACAAATGAAAGGTTGAAAAGGAAGTTATCCGTA-ATGGAT
1 AACAAATGAAAGGTTGAAAAGGAAGTTATCCATATA-GGAT
* * *
32401057 AACAAATGAAAATGTGGAAAAGGGAGTTATCCATATAGGAT
1 AACAAATG-AAAGGTTGAAAAGGAAGTTATCCATATAGGAT
32401098 AACAAATGGAAAGGTTG
1 AACAAAT-GAAAGGTTG
32401115 TATTTGAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 8 0.16
41 39 0.80
42 2 0.04
ACGTcount: A:0.46, C:0.07, G:0.26, T:0.21
Consensus pattern (40 bp):
AACAAATGAAAGGTTGAAAAGGAAGTTATCCATATAGGAT
Found at i:32413308 original size:41 final size:41
Alignment explanation
Indices: 32413251--32413350 Score: 200
Period size: 41 Copynumber: 2.4 Consensus size: 41
32413241 GAACCCAATA
32413251 TGAAATGCCTAAGCTTGTGGGATTGATTAGGGTCTTTGAAG
1 TGAAATGCCTAAGCTTGTGGGATTGATTAGGGTCTTTGAAG
32413292 TGAAATGCCTAAGCTTGTGGGATTGATTAGGGTCTTTGAAG
1 TGAAATGCCTAAGCTTGTGGGATTGATTAGGGTCTTTGAAG
32413333 TGAAATGCCTAAGCTTGT
1 TGAAATGCCTAAGCTTGT
32413351 TAACATTCTC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.34
Consensus pattern (41 bp):
TGAAATGCCTAAGCTTGTGGGATTGATTAGGGTCTTTGAAG
Found at i:32420997 original size:40 final size:40
Alignment explanation
Indices: 32420937--32421043 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 40
32420927 TGCGACATTT
* * *
32420937 TTAGCGGCGCTTTTTAAAAAACGCCGCTATAGGTTGAGCA
1 TTAGCGGCGCTTTTTAAAAAACGCAGCTATAGGTCGACCA
* * *
32420977 TTAGCGGCGCTTTTTGAAAAACGTAGTTATAGGTCGACCA
1 TTAGCGGCGCTTTTTAAAAAACGCAGCTATAGGTCGACCA
* * *
32421017 TTAGCAGCACTTTTTAAAAAACACAGC
1 TTAGCGGCGCTTTTTAAAAAACGCAGC
32421044 AAAAAAATTA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTAAAAAACGCAGCTATAGGTCGACCA
Found at i:32421149 original size:40 final size:40
Alignment explanation
Indices: 32421089--32421279 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
32421079 AGCTTTAGTG
* *
32421089 GCATTAGCGGCGTTTTTTGAAAAACGTCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * *
32421129 GCATTAGCGACGCTTCTTGAAAAACGCCACTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * *
32421169 GCATTAGCGGCGCTTCTTCAAAAACGTCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * * *
32421209 GCATTAGCAGTGCTTTTTGAAAAAGCGCCGCTATAGGTCAA
1 GCATTAGCGGCGCTTTTTGAAAAA-CGCCGCTATAGATCGA
* *
32421250 CCATTAGCGGCGCTTTTTGAAAAACACCGC
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGC
32421280 AAAAAAATTA
Statistics
Matches: 130, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 96 0.74
41 34 0.26
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:32421392 original size:40 final size:40
Alignment explanation
Indices: 32421337--32421437 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
32421327 TGCGTTTTTA
* *
32421337 AAAAACGCAGCTATAGATCGAGTATTAACGGC-GCATCTTG
1 AAAAACGCCGCTATAGATCGAGCATTAACGGCAGC-TCTTG
* *
32421377 AAAAACGCCGCTATAGATCGAGCATTAGCTGCAGCTCTTG
1 AAAAACGCCGCTATAGATCGAGCATTAACGGCAGCTCTTG
* *
32421417 AAAAATGCCGTTATAGATCGA
1 AAAAACGCCGCTATAGATCGA
32421438 ACTTTATGAT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 52 0.96
41 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAACGGCAGCTCTTG
Found at i:32421402 original size:229 final size:233
Alignment explanation
Indices: 32420937--32421437 Score: 638
Period size: 229 Copynumber: 2.2 Consensus size: 233
32420927 TGCGACATTT
* * * * *
32420937 TTAGCGGCGCTTTTTAAAAAACGCCGCTATAGGTTGAGCATTAGCGGCGCTTTTTGAAAAACGTA
1 TTAGCGGCGCTTCTTAAAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGAAAAACGCA
* *
32421002 GTTATAGGTCGACCATTAGCAGCACTTTTTAAAAAACACAGCAAAAAAATTAAGCACAACGCCAT
66 GCTATAGGTCAACCATTAGCAGCACTTTTTAAAAAACACAGCAAAAAAATTAAGCACAA--CCAT
*** *
32421067 CATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGTTTTTTGAAAAACGTCGCTATAGATCGAGCA
129 CATACCATGTTGAGCTTTAGTGGCATTAGCGGCGTTTTTTAAAAAACGTCGCTATAGATCGAGCA
* *
32421132 TTAGCGACGCTTCTTGAAAAACGCCACTATAGATCGAGCA
194 TTAACGACGCATCTTGAAAAACGCCACTATAGATCGAGCA
* * *
32421172 TTAGCGGCGCTTCTTCAAAAACGTCGCTATAGATCGAGCATTAGCAGTGCTTTTTGAAAAAGCGC
1 TTAGCGGCGCTTCTTAAAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGAAAAA-CGC
* * * * *
32421237 CGCTATAGGTCAACCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAAATTAAGCACAA-CA-C
65 AGCTATAGGTCAACCATTAGCAGCACTTTTTAAAAAACACAGCAAAAAAATTAAGCACAACCATC
* * *
32421300 -TACCGT-TTGAGCTTTAGTGGCATTAGCTGCG-TTTTTAAAAAACG-CAGCTATAGATCGAGTA
130 ATACCATGTTGAGCTTTAGTGGCATTAGCGGCGTTTTTTAAAAAACGTC-GCTATAGATCGAGCA
* *
32421361 TTAACGGCGCATCTTGAAAAACGCCGCTATAGATCGAGCA
194 TTAACGACGCATCTTGAAAAACGCCACTATAGATCGAGCA
* * * *
32421401 TTAGCTGCAGC-TCTTGAAAAATGCCGTTATAGATCGA
1 TTAGCGGC-GCTTCTTAAAAAACGCCGCTATAGATCGA
32421438 ACTTTATGAT
Statistics
Matches: 232, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
228 1 0.00
229 91 0.39
230 26 0.11
231 2 0.01
232 1 0.00
233 2 0.01
235 54 0.23
236 55 0.24
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (233 bp):
TTAGCGGCGCTTCTTAAAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGAAAAACGCA
GCTATAGGTCAACCATTAGCAGCACTTTTTAAAAAACACAGCAAAAAAATTAAGCACAACCATCA
TACCATGTTGAGCTTTAGTGGCATTAGCGGCGTTTTTTAAAAAACGTCGCTATAGATCGAGCATT
AACGACGCATCTTGAAAAACGCCACTATAGATCGAGCA
Found at i:32421512 original size:14 final size:14
Alignment explanation
Indices: 32421460--32421513 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
32421450 AAGGATTATT
32421460 GTTTATGGTTTAAG
1 GTTTATGGTTTAAG
* * *
32421474 GGTTGTGATTTAAGG
1 GTTTATGGTTTAA-G
* *
32421489 GTTAAGGGTTTAAG
1 GTTTATGGTTTAAG
32421503 GTTTATGGTTT
1 GTTTATGGTTT
32421514 TTGTTTTATG
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
14 20 0.69
15 9 0.31
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.46
Consensus pattern (14 bp):
GTTTATGGTTTAAG
Found at i:32421674 original size:14 final size:14
Alignment explanation
Indices: 32421652--32421767 Score: 85
Period size: 14 Copynumber: 8.1 Consensus size: 14
32421642 TTAGTGTCCA
*
32421652 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
32421666 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
32421680 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
* * *
32421694 TTAAGTTTTAAGAGT
1 TTATGGTTT-AGGGT
*
32421709 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
*
32421723 TTATGGATTATGGGT
1 TTATGGTTTA-GGGT
*
32421738 TTATGGATTATGGG-
1 TTATGGTTTA-GGGT
32421752 TTATGGTTTAAGGGT
1 TTATGGTTT-AGGGT
32421767 T
1 T
32421768 GGGGTTTATG
Statistics
Matches: 82, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
12 3 0.04
14 50 0.61
15 27 0.33
17 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:32421738 original size:15 final size:15
Alignment explanation
Indices: 32421720--32421767 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
32421710 ACTATTTTAA
32421720 GGTTTATGGATTATG
1 GGTTTATGGATTATG
32421735 GGTTTATGGATTATG
1 GGTTTATGGATTATG
* *
32421750 GG-TTATGGTTTAAG
1 GGTTTATGGATTATG
32421764 GGTT
1 GGTT
32421768 GGGGTTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:32421773 original size:14 final size:15
Alignment explanation
Indices: 32421756--32421818 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 15
32421746 TATGGGTTAT
*
32421756 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAAG
* *
32421770 GGTTT-ATGGTTTAG
1 GGTTTAAGGGTTAAG
*
32421784 GTTTTAAGGGTTAAG
1 GGTTTAAGGGTTAAG
* *
32421799 GG-TTAAGTGTTAGG
1 GGTTTAAGGGTTAAG
32421813 GGTTTA
1 GGTTTA
32421819 GCGTTTATGA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
13 5 0.13
14 22 0.58
15 11 0.29
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.41
Consensus pattern (15 bp):
GGTTTAAGGGTTAAG
Found at i:32421786 original size:6 final size:7
Alignment explanation
Indices: 32421652--32421787 Score: 71
Period size: 7 Copynumber: 19.3 Consensus size: 7
32421642 TTAGTGTCCA
*
32421652 TTATAGT
1 TTATGGT
*
32421659 TTAGGGT
1 TTATGGT
32421666 TTATGGT
1 TTATGGT
*
32421673 TTAGGGT
1 TTATGGT
*
32421680 ATATGGT
1 TTATGGT
*
32421687 TTAGGGT
1 TTATGGT
* *
32421694 TTAAGTT
1 TTATGGT
*
32421701 TTAAGAGT
1 TTATG-GT
32421709 TACTAT--T
1 T--TATGGT
*
32421716 TTAAGGT
1 TTATGGT
*
32421723 TTATGGA
1 TTATGGT
32421730 TTATGGGT
1 TTAT-GGT
*
32421738 TTATGGA
1 TTATGGT
*
32421745 TTATGGG
1 TTATGGT
32421752 TTATGGT
1 TTATGGT
* *
32421759 TTAAGGG
1 TTATGGT
**
32421766 TTGGGGT
1 TTATGGT
32421773 TTATGGT
1 TTATGGT
32421780 TTA-GGT
1 TTATGGT
32421786 TT
1 TT
32421788 TAAGGGTTAA
Statistics
Matches: 97, Mismatches: 26, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
5 2 0.02
6 5 0.05
7 80 0.82
8 8 0.08
10 2 0.02
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:32422256 original size:19 final size:20
Alignment explanation
Indices: 32422228--32422272 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
32422218 AATTATAACA
*
32422228 AAAAAAGAAATACAAAAA-T
1 AAAAATGAAATACAAAAACT
32422247 AAAAATGAAATACAAAAACT
1 AAAAATGAAATACAAAAACT
32422267 AAAAAT
1 AAAAAT
32422273 TATAATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (20 bp):
AAAAATGAAATACAAAAACT
Found at i:32422597 original size:13 final size:14
Alignment explanation
Indices: 32422579--32422607 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32422569 CCTGAAATCT
32422579 CATTTTA-TTTTCC
1 CATTTTATTTTTCC
32422592 CATTTTATTTTTCC
1 CATTTTATTTTTCC
32422606 CA
1 CA
32422608 AACCATTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (14 bp):
CATTTTATTTTTCC
Found at i:32423265 original size:53 final size:54
Alignment explanation
Indices: 32423173--32423277 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 54
32423163 ATCCCTAGAC
*
32423173 CCAAGCTTCAATTTTACAAATAGACTAGGAAACTAAATAATGTAAGTTTTGACG
1 CCAAGCTTCAATTTTACAAATAAACTAGGAAACTAAATAATGTAAGTTTTGACG
**
32423227 CCAAGCTTCAATTTTAC-CCTAAACTAGGAAACTAAATAATGTAAGTTTTGA
1 CCAAGCTTCAATTTTACAAATAAACTAGGAAACTAAATAATGTAAGTTTTGA
32423278 AATCCTGTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 31 0.65
54 17 0.35
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (54 bp):
CCAAGCTTCAATTTTACAAATAAACTAGGAAACTAAATAATGTAAGTTTTGACG
Found at i:32426127 original size:28 final size:28
Alignment explanation
Indices: 32426094--32426151 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
32426084 TATGCATATC
32426094 AAAGCATTATTGTATTAGTTAGTTTTTT
1 AAAGCATTATTGTATTAGTTAGTTTTTT
32426122 AAAGCATTATTGTATTAGTTAGTTTTTT
1 AAAGCATTATTGTATTAGTTAGTTTTTT
32426150 AA
1 AA
32426152 CATTAACTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.14, T:0.52
Consensus pattern (28 bp):
AAAGCATTATTGTATTAGTTAGTTTTTT
Found at i:32426492 original size:44 final size:43
Alignment explanation
Indices: 32426426--32426513 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 43
32426416 GTGGTGTTTG
* *
32426426 ATAAAAGCGCCGCTAAAGGTCATATTCTT-TAGCGGCGTTTTTTT
1 ATAAAAGCGCAGCTAAAAGTCATATT-TTATAGCGGC-TTTTTTT
* *
32426470 ATAAAAGCGCAGTTAAAAGTCATGTTTTATAGCGGCTTTTTTT
1 ATAAAAGCGCAGCTAAAAGTCATATTTTATAGCGGCTTTTTTT
32426513 A
1 A
32426514 CATAAACGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (43 bp):
ATAAAAGCGCAGCTAAAAGTCATATTTTATAGCGGCTTTTTTT
Found at i:32427261 original size:130 final size:130
Alignment explanation
Indices: 32427028--32427286 Score: 500
Period size: 130 Copynumber: 2.0 Consensus size: 130
32427018 AACAACCTTA
*
32427028 AGACTTCCGTACCCACGCAGCCCAGTCCTTCCTCACCGCCTTCAGAACCAAGTTTGGAACATCAG
1 AGACTTCCGTACCCACGCAGCCCAGTCCTTACTCACCGCCTTCAGAACCAAGTTTGGAACATCAG
32427093 TATCCCATCTCCAACAAACCCCTCTCCTCCTTCCTTCAATGGCAAGAGCATGCGCCGCTTCATTG
66 TATCCCATCTCCAACAAACCCCTCTCCTCCTTCCTTCAATGGCAAGAGCATGCGCCGCTTCATTG
*
32427158 AGACTTCCGTACCCACGCAGCCCAGTCCTTACTTACCGCCTTCAGAACCAAGTTTGGAACATCAG
1 AGACTTCCGTACCCACGCAGCCCAGTCCTTACTCACCGCCTTCAGAACCAAGTTTGGAACATCAG
32427223 TATCCCATCTCCAACAAACCCCTCTCCTCCTTCCTTCAATGGCAAGAGCATGCGCCGCTTCATT
66 TATCCCATCTCCAACAAACCCCTCTCCTCCTTCCTTCAATGGCAAGAGCATGCGCCGCTTCATT
32427287 TCCTTCCCGA
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 127 1.00
ACGTcount: A:0.24, C:0.39, G:0.14, T:0.24
Consensus pattern (130 bp):
AGACTTCCGTACCCACGCAGCCCAGTCCTTACTCACCGCCTTCAGAACCAAGTTTGGAACATCAG
TATCCCATCTCCAACAAACCCCTCTCCTCCTTCCTTCAATGGCAAGAGCATGCGCCGCTTCATTG
Found at i:32431805 original size:12 final size:11
Alignment explanation
Indices: 32431776--32431807 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
32431766 TAACACTCCG
32431776 TAAATATTTAA
1 TAAATATTTAA
32431787 TAAATATTTAA
1 TAAATATTTAA
32431798 TAAAATATTT
1 T-AAATATTT
32431808 TCGAGCTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAAATATTTAA
Found at i:32435479 original size:12 final size:12
Alignment explanation
Indices: 32435462--32435487 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32435452 TAATCCTCTC
32435462 AATTTCCTTCCA
1 AATTTCCTTCCA
32435474 AATTTCCTTCCA
1 AATTTCCTTCCA
32435486 AA
1 AA
32435488 ATTCTCTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (12 bp):
AATTTCCTTCCA
Done.