Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 112 of 187
Found at i:33035150 original size:27 final size:27
Alignment explanation
Indices: 33035092--33035193 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
33035082 CTTAAGAGTG
* * * *
33035092 CGCCACAAAGGCATTTCATACGAAATTT
1 CGCCACAAAGGCTTTTCTTTC-ATATTT
* *
33035120 -GCCACAATGGCTTTTCTTTTATATTT
1 CGCCACAAAGGCTTTTCTTTCATATTT
33035146 CGCCACAAAGGCTTTTCTTTCATATTT
1 CGCCACAAAGGCTTTTCTTTCATATTT
* *
33035173 CTCCACAAAGGCATTTCTTTC
1 CGCCACAAAGGCTTTTCTTTC
33035194 CTAACGTGTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.08
27 58 0.92
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.37
Consensus pattern (27 bp):
CGCCACAAAGGCTTTTCTTTCATATTT
Found at i:33036886 original size:4 final size:4
Alignment explanation
Indices: 33036877--33036910 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
33036867 TTTTTTATAT
* *
33036877 TTTA TTTA TTAA TTTA TTTA TTTA TCTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
33036911 ATTACTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:33037667 original size:12 final size:11
Alignment explanation
Indices: 33037647--33037746 Score: 80
Period size: 12 Copynumber: 8.7 Consensus size: 11
33037637 GGGTTAATAT
33037647 TATTTTATGTA
1 TATTTTATGTA
33037658 TATCTTTATGTA
1 TAT-TTTATGTA
33037670 T-TTTT-TGTA
1 TATTTTATGTA
*
33037679 TATATTTATGCA
1 TAT-TTTATGTA
* *
33037691 TAACTCTATGTA
1 T-ATTTTATGTA
33037703 TATTCTTATGTA
1 TATT-TTATGTA
*
33037715 TTATTTTAT-AA
1 -TATTTTATGTA
33037726 TATTCTTATGTA
1 TATT-TTATGTA
33037738 TTATTTTAT
1 -TATTTTAT
33037747 AATATTGTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 19
0.72 0.08 0.19
Matches are distributed among these distances:
9 5 0.07
10 8 0.11
11 14 0.20
12 35 0.49
13 9 0.13
ACGTcount: A:0.27, C:0.06, G:0.07, T:0.60
Consensus pattern (11 bp):
TATTTTATGTA
Found at i:33037671 original size:21 final size:21
Alignment explanation
Indices: 33037647--33037688 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
33037637 GGGTTAATAT
*
33037647 TATTTTATGTATATCTTTATG
1 TATTTTATGTATATATTTATG
*
33037668 TATTTTTTGTATATATTTATG
1 TATTTTATGTATATATTTATG
33037689 CATAACTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.64
Consensus pattern (21 bp):
TATTTTATGTATATATTTATG
Found at i:33037729 original size:23 final size:23
Alignment explanation
Indices: 33037702--33037752 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
33037692 AACTCTATGT
33037702 ATATTCTTATGTATTATTTTATA
1 ATATTCTTATGTATTATTTTATA
33037725 ATATTCTTATGTATTATTTTATA
1 ATATTCTTATGTATTATTTTATA
33037748 ATATT
1 ATATT
33037753 GTTTCTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (23 bp):
ATATTCTTATGTATTATTTTATA
Found at i:33037840 original size:12 final size:12
Alignment explanation
Indices: 33037825--33037873 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
33037815 TATAAATTTG
33037825 TATATATTTTTA
1 TATATATTTTTA
33037837 TATATATTTTTA
1 TATATATTTTTA
* * *
33037849 TTTGTA-ATTTA
1 TATATATTTTTA
33037860 TATATAATTTTTA
1 TATAT-ATTTTTA
33037873 T
1 T
33037874 CGAACATTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
11 7 0.24
12 17 0.59
13 5 0.17
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (12 bp):
TATATATTTTTA
Found at i:33037882 original size:24 final size:23
Alignment explanation
Indices: 33037833--33037882 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
33037823 TGTATATATT
* *
33037833 TTTATATATATTTTTATTTGTAA
1 TTTATATATATTTTTATTCGAAA
33037856 TTTATATATAATTTTTA-TCGAACA
1 TTTATATAT-ATTTTTATTCGAA-A
33037880 TTT
1 TTT
33037883 TTTTAATTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTATATATATTTTTATTCGAAA
Found at i:33043281 original size:32 final size:31
Alignment explanation
Indices: 33043225--33043285 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
33043215 AGCATTTACT
33043225 AAACATTGGAAATTAGATAACACTAGTTTAAA
1 AAACATTGGAAATTAGATAACACTA-TTTAAA
* * **
33043257 AAACCTTGGAATTTAGATGTCACTATTTA
1 AAACATTGGAAATTAGATAACACTATTTA
33043286 CAATTGCTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 4 0.16
32 21 0.84
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (31 bp):
AAACATTGGAAATTAGATAACACTATTTAAA
Found at i:33062389 original size:57 final size:57
Alignment explanation
Indices: 33062317--33062430 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
33062307 GATTATATGC
* * *
33062317 CTTAAATTGTCGAATTTTTGTGGTCTGGAGTAGAGGTATCGATATTATTATTTTAAA
1 CTTAAACTGTCGAATTTTTGTGGTCTGGAGCAGAGGTATCGATATTAGTATTTTAAA
* *
33062374 CTTAAACTGTTGAATTTTTGTGGTCTGGAGCAGAGGTATCGATATTCGTATTTTAAA
1 CTTAAACTGTCGAATTTTTGTGGTCTGGAGCAGAGGTATCGATATTAGTATTTTAAA
33062431 AATGATACCT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (57 bp):
CTTAAACTGTCGAATTTTTGTGGTCTGGAGCAGAGGTATCGATATTAGTATTTTAAA
Found at i:33066802 original size:8 final size:8
Alignment explanation
Indices: 33066788--33066818 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
33066778 ATTACAAACC
33066788 CAAAATAT
1 CAAAATAT
*
33066796 TAAAATAT
1 CAAAATAT
33066804 CAAAATAT
1 CAAAATAT
33066812 CAAAATA
1 CAAAATA
33066819 AAATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.26
Consensus pattern (8 bp):
CAAAATAT
Found at i:33067241 original size:47 final size:47
Alignment explanation
Indices: 33067202--33067300 Score: 153
Period size: 47 Copynumber: 2.1 Consensus size: 47
33067192 ATAAACTATC
* *
33067202 AATAATCAAAATTGTGGACAAGCCACCAAAATCGTAGATAAACTGCT
1 AATAATCAAAATCGTGGACAAGCCACCAAAATCATAGATAAACTGCT
* * *
33067249 AATAATCAAAATCGTGGACAAGCCATCAAAATTATAGATAAACTGCC
1 AATAATCAAAATCGTGGACAAGCCACCAAAATCATAGATAAACTGCT
33067296 AATAA
1 AATAA
33067301 CTTCCACTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.21
Consensus pattern (47 bp):
AATAATCAAAATCGTGGACAAGCCACCAAAATCATAGATAAACTGCT
Found at i:33070237 original size:18 final size:19
Alignment explanation
Indices: 33070216--33070251 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
33070206 TTTAATTTTA
33070216 ATTTTAATT-AATAAATAT
1 ATTTTAATTAAATAAATAT
*
33070234 ATTTTACTTAAATAAATA
1 ATTTTAATTAAATAAATA
33070252 ACTAAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTTAATTAAATAAATAT
Found at i:33078731 original size:22 final size:23
Alignment explanation
Indices: 33078694--33078738 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
33078684 CACTTGAAAA
33078694 TAATAAAACCTAAAATCCTAATT
1 TAATAAAACCTAAAATCCTAATT
*
33078717 TAAT-AAACCTTAAATCCTAATT
1 TAATAAAACCTAAAATCCTAATT
33078739 AAACACTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (23 bp):
TAATAAAACCTAAAATCCTAATT
Found at i:33079590 original size:22 final size:20
Alignment explanation
Indices: 33079565--33079614 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
33079555 TGAAAATACC
*
33079565 ATTATTTTGTAAAATAAATTAT
1 ATTATTTT-AAAAATAAATT-T
33079587 ATTA-TTTAAAAATAAATTT
1 ATTATTTTAAAAATAAATTT
*
33079606 ATCATTTTA
1 ATTATTTTA
33079615 TATCTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.16
20 14 0.56
21 3 0.12
22 4 0.16
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTATTTTAAAAATAAATTT
Found at i:33079614 original size:20 final size:20
Alignment explanation
Indices: 33079575--33079612 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33079565 ATTATTTTGT
*
33079575 AAAATAAATTATATTATTTA
1 AAAATAAATTATATCATTTA
33079595 AAAATAAATT-TATCATTT
1 AAAATAAATTATATCATTT
33079613 TATATCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATAAATTATATCATTTA
Found at i:33081600 original size:16 final size:15
Alignment explanation
Indices: 33081579--33081629 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
33081569 GAGTGAAAAA
33081579 AAAATTGGAAGGATGG
1 AAAATT-GAAGGATGG
*
33081595 AAAATTGAAGGGATAG
1 AAAATTGAA-GGATGG
*
33081611 AAAACTAGAA-GATGG
1 AAAA-TTGAAGGATGG
33081626 AAAA
1 AAAA
33081630 CATAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 11 0.37
16 15 0.50
17 4 0.13
ACGTcount: A:0.53, C:0.02, G:0.29, T:0.16
Consensus pattern (15 bp):
AAAATTGAAGGATGG
Found at i:33087698 original size:42 final size:42
Alignment explanation
Indices: 33087639--33087723 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
33087629 GAATGCGGCC
33087639 TAGTTTTTATCATATAGAAGGACTACAAAATAAGTAATTGAG
1 TAGTTTTTATCATATAGAAGGACTACAAAATAAGTAATTGAG
33087681 TAGTTTTTATCATATAGAAGGACTACAAAATAAGTAATTGAG
1 TAGTTTTTATCATATAGAAGGACTACAAAATAAGTAATTGAG
33087723 T
1 T
33087724 CAAAGGACTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.34
Consensus pattern (42 bp):
TAGTTTTTATCATATAGAAGGACTACAAAATAAGTAATTGAG
Found at i:33088387 original size:2 final size:2
Alignment explanation
Indices: 33088380--33088407 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
33088370 TTAGCTTTCC
33088380 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33088408 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33090445 original size:27 final size:27
Alignment explanation
Indices: 33090406--33090464 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
33090396 AGTCCTGTGC
*
33090406 CGCCAATGGGAATGGCACCACCGGTGT
1 CGCCAATGAGAATGGCACCACCGGTGT
33090433 CGCCAATGAGAATGGCACCACCGGTGT
1 CGCCAATGAGAATGGCACCACCGGTGT
33090460 CGCCA
1 CGCCA
33090465 TTCCATTACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.32, G:0.31, T:0.14
Consensus pattern (27 bp):
CGCCAATGAGAATGGCACCACCGGTGT
Found at i:33090552 original size:17 final size:19
Alignment explanation
Indices: 33090516--33090553 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33090506 TAAATAATTT
33090516 TTTTTATATTATTTTGGTA
1 TTTTTATATTATTTTGGTA
*
33090535 TTTTTAT-TTCTTTT-GTA
1 TTTTTATATTATTTTGGTA
33090552 TT
1 TT
33090554 ATTTTAGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 6 0.33
19 7 0.39
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.74
Consensus pattern (19 bp):
TTTTTATATTATTTTGGTA
Found at i:33098609 original size:21 final size:21
Alignment explanation
Indices: 33098583--33098635 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
33098573 CATTGTTTCT
* * *
33098583 AATCTCACCGTTATAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
33098604 AATCTCATCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
33098625 AATCTCACCGC
1 AATCTCACCGC
33098636 CACCGCTGTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.28
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:33099150 original size:8 final size:8
Alignment explanation
Indices: 33099137--33099194 Score: 59
Period size: 8 Copynumber: 7.4 Consensus size: 8
33099127 ATAAGAAAAT
33099137 ATTATTAA
1 ATTATTAA
33099145 ATTATTAA
1 ATTATTAA
33099153 ATTA-T-A
1 ATTATTAA
33099159 ATTAGTT-A
1 ATTA-TTAA
*
33099167 ATTATTAT
1 ATTATTAA
*
33099175 ATTGTTAA
1 ATTATTAA
33099183 CATTATTAA
1 -ATTATTAA
33099192 ATT
1 ATT
33099195 TATAATTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 5 0.12
7 3 0.07
8 27 0.64
9 7 0.17
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (8 bp):
ATTATTAA
Found at i:33101410 original size:21 final size:21
Alignment explanation
Indices: 33101386--33101425 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33101376 ATAATATAAA
33101386 TTACAAATTAAAATTATTTTT
1 TTACAAATTAAAATTATTTTT
* *
33101407 TTACAATTTATAATTATTT
1 TTACAAATTAAAATTATTT
33101426 ATCAAAGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TTACAAATTAAAATTATTTTT
Found at i:33104973 original size:29 final size:28
Alignment explanation
Indices: 33104915--33104974 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
33104905 AATATTTATT
* *
33104915 TTTTTTATTTTTAAAATACTTGTTTTTG
1 TTTTTTATTTTTAAAATAATTGTTTGTG
33104943 TTTTTTATTTTTAAAATAAATT-TTTGGTG
1 TTTTTTATTTTTAAAAT-AATTGTTT-GTG
33104972 TTT
1 TTT
33104975 ATTAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.23, C:0.02, G:0.08, T:0.67
Consensus pattern (28 bp):
TTTTTTATTTTTAAAATAATTGTTTGTG
Found at i:33107713 original size:22 final size:21
Alignment explanation
Indices: 33107674--33107714 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
33107664 ATTTTAAATT
* *
33107674 TAGTGATGGTATCGTGATATC
1 TAGTGATGATATCATGATATC
33107695 TAGTGATGAATATCATGATA
1 TAGTGATG-ATATCATGATA
33107715 CCCCTGTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (21 bp):
TAGTGATGATATCATGATATC
Found at i:33112391 original size:16 final size:16
Alignment explanation
Indices: 33112370--33112401 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33112360 TGGCAACATT
33112370 GGGAATTATATCATGA
1 GGGAATTATATCATGA
*
33112386 GGGAATTATATTATGA
1 GGGAATTATATCATGA
33112402 CATATTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (16 bp):
GGGAATTATATCATGA
Found at i:33112494 original size:30 final size:31
Alignment explanation
Indices: 33112460--33112527 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
33112450 TTGCCCAAGA
** * **
33112460 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
33112490 GTAAATACAAAAAATTTGAAGGACCAATAGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
33112521 GTAAATA
1 GTAAATA
33112528 TTTTAAGAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26
Consensus pattern (31 bp):
GTAAATACAAAAAATTTGAAGGACCAATAGT
Found at i:33120151 original size:15 final size:16
Alignment explanation
Indices: 33120125--33120157 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
33120115 ATTTGGACCC
33120125 TATTTTTCTATTTATT
1 TATTTTTCTATTTATT
*
33120141 TATTTTT-TATTTGTT
1 TATTTTTCTATTTATT
33120156 TA
1 TA
33120158 CTAAGAGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TATTTTTCTATTTATT
Found at i:33120399 original size:44 final size:43
Alignment explanation
Indices: 33120348--33120682 Score: 288
Period size: 44 Copynumber: 7.8 Consensus size: 43
33120338 GGAATTTGGT
** * *
33120348 GCTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA-CG
* * *
33120392 GCTTTAATCAGCTCCACTGCAACTTTAGGGAGATAAGACTA--
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACG
* *** * * *
33120433 GATGCGATCTGCT-CTCTGCGAA-TTCAGAGAGATAAGATCTAAG
1 GCTTTAATCTGCTCCACTGC-AACTTCAGGGAGATAAGAT-TACG
* * * *
33120476 GTTTTGATCTGCTCCACTGCAACTTCAAGGAGATAGGATTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA-CG
33120520 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA--
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACG
* *** * * *
33120561 GATGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TACG
* * * *
33120604 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGCCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ACG
* *
33120648 ACTTTAATCTGCTCCACTGCAACTTCAGAGAGATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
33120683 GGACTGTCAG
Statistics
Matches: 234, Mismatches: 45, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
40 41 0.18
41 23 0.10
43 23 0.10
44 147 0.63
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (43 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACG
Found at i:33120580 original size:84 final size:85
Alignment explanation
Indices: 33120481--33120682 Score: 248
Period size: 84 Copynumber: 2.4 Consensus size: 85
33120471 CTAAGGTTTT
* * *
33120481 GATCTGCTCCACTGCAACTTCA-AGGAGATAGGAT-TATCGGCTTTAATCTGCTCCACTGCAACT
1 GATCTGCTCCACTGCAACTTCAGA-GAGATAAGATCTA-AGGCTTTAATCCGCTCCACTGCAACT
33120544 TCAGGGAGATAAGATTAGATGC
64 TCAGGGAGATAAGATTAGATGC
* *
33120566 GATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTC
1 GATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTC
* * **
33120630 AGGGAGATAGGATTGCCGACTTT
66 AGGGAGATAAGATT--AGA-TGC
*
33120653 AATCTGCTCCACTGCAACTTCAGAGAGATA
1 GATCTGCTCCACTGCAACTTCAGAGAGATA
33120683 GGACTGTCAG
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
84 59 0.59
85 11 0.11
86 2 0.02
87 8 0.08
88 20 0.20
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (85 bp):
GATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTC
AGGGAGATAAGATTAGATGC
Found at i:33120587 original size:128 final size:128
Alignment explanation
Indices: 33120350--33120687 Score: 543
Period size: 128 Copynumber: 2.6 Consensus size: 128
33120340 AATTTGGTGC
* * *
33120350 TTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATCGGCTTTAATCAGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
*
33120415 TTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCGAATTCAGAGAGATAAGATCTAAGGT
66 TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCGAATTCAGAGAGATAAGATCTAAGGT
* * *
33120478 TTTGATCTGCTCCACTGCAACTTCAAGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
*
33120543 TTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTGC-AACTTCAGAGAGATAAGATCTAAGGT
66 TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCGAA-TTCAGAGAGATAAGATCTAAGGT
** *
33120606 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGCCGACTTTAATCTGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
* *
33120671 TTCAGAGAGATAGGACT
66 TTCAGGGAGATAAGACT
33120688 GTCAGCTACG
Statistics
Matches: 192, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
127 2 0.01
128 190 0.99
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (128 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCGAATTCAGAGAGATAAGATCTAAGGT
Found at i:33133881 original size:15 final size:16
Alignment explanation
Indices: 33133855--33133887 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
33133845 ATTTGGACCC
33133855 TATTTTTCTATTTATT
1 TATTTTTCTATTTATT
*
33133871 TATTTTT-TATTTGTT
1 TATTTTTCTATTTATT
33133886 TA
1 TA
33133888 CTAAGAGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TATTTTTCTATTTATT
Found at i:33134393 original size:13 final size:13
Alignment explanation
Indices: 33134375--33134440 Score: 81
Period size: 13 Copynumber: 5.5 Consensus size: 13
33134365 AATGTTGAAT
33134375 TATTTAGTGATAA
1 TATTTAGTGATAA
*
33134388 TATTTA--GA-AT
1 TATTTAGTGATAA
33134398 TATTTAGTGATAA
1 TATTTAGTGATAA
33134411 TATTTAG-GAT--
1 TATTTAGTGATAA
33134421 TATTTAGTGATAA
1 TATTTAGTGATAA
33134434 TATTTAG
1 TATTTAG
33134441 AAAAAATCTA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
10 14 0.31
11 5 0.11
12 5 0.11
13 21 0.47
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:33134397 original size:23 final size:23
Alignment explanation
Indices: 33134371--33134442 Score: 135
Period size: 23 Copynumber: 3.1 Consensus size: 23
33134361 TTTAAATGTT
33134371 GAATTATTTAGTGATAATATTTA
1 GAATTATTTAGTGATAATATTTA
33134394 GAATTATTTAGTGATAATATTTA
1 GAATTATTTAGTGATAATATTTA
*
33134417 GGATTATTTAGTGATAATATTTA
1 GAATTATTTAGTGATAATATTTA
33134440 GAA
1 GAA
33134443 AAAATCTAGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (23 bp):
GAATTATTTAGTGATAATATTTA
Found at i:33136066 original size:427 final size:427
Alignment explanation
Indices: 33135266--33136120 Score: 1595
Period size: 427 Copynumber: 2.0 Consensus size: 427
33135256 ATTTTATTTA
*
33135266 ACAATTTATTTCATTTTCTTAAATTTATTTTTGCATTTTTAAATCTGTTTTTATTTTATTTTATT
1 ACAATTTATTTCATTTTCTTAAATTTATTTTTGCATTTTTAAATATGTTTTTATTTTATTTTATT
* *
33135331 ACACTTCATATTTCCTTTTTTTTTATCTTAATCAATTTAGATCTCCCATTTTTATTTATTTATTT
66 ACACTTCATATTTCCTTTTTTATTATCTTAATCAATTTAGATATCCCATTTTTATTTATTTATTT
*
33135396 TAGCATTACTACGCAAAGGTCGTGGGCACGACTGTGACTGCGACAGCGAACCTGGTCACAAGAAA
131 TAGCATTACTACGCAAAGGTCGTGGGCACGACTGTGACTGCGACAACGAACCTGGTCACAAGAAA
33135461 ATGTGAAATTAGATAACCAGTCCCTATGGATTCGACCCTACTGCTATATATTTCAATTTACTGTT
196 ATGTGAAATTAGATAACCAGTCCCTATGGATTCGACCCTACTGCTATATATTTCAATTTACTGTT
33135526 ATATTTGCCGTAGGAATTTATATTTGGTGGTTTCGACGCCCATCAGTGGCGATCTTTGATAAAAA
261 ATATTTGCCGTAGGAATTTATATTTGGTGGTTTCGACGCCCATCAGTGGCGATCTTTGATAAAAA
*
33135591 GAATGCCTTTATGGCTCCCTCTGTTAGAAGGACACCTTTGTGGTGAGACTCTGAAAGGAAAGTCT
326 GAATGCCTTTATGGCTCCCTCTGTTAGAAGGACACCTTTGTAGTGAGACTCTGAAAGGAAAGTCT
33135656 CTGTGGCTATCTTTGTAAGGGAACGCCTTCATGGTGG
391 CTGTGGCTATCTTTGTAAGGGAACGCCTTCATGGTGG
33135693 ACAATTTATTTCATTTTCTTAAATTTATTTTTGCA-TTTTAAATATGTTTTTATTTTATTTTATT
1 ACAATTTATTTCATTTTCTTAAATTTATTTTTGCATTTTTAAATATGTTTTTATTTTATTTTATT
33135757 ACACTTCATATTTCCTTATTTTATTATCTTAATCAATTTAGATATCCCATTTTTATTTATTTATT
66 ACACTTCATATTTCCTT-TTTTATTATCTTAATCAATTTAGATATCCCATTTTTATTTATTTATT
* *
33135822 TTAGCATTACTACGCAAAGGTCGTGGGCACGACTGTGACTGCGACAACGAATCTGGTCATAAGAA
130 TTAGCATTACTACGCAAAGGTCGTGGGCACGACTGTGACTGCGACAACGAACCTGGTCACAAGAA
33135887 AATGTGAAATTAGATAACCAGTCCCTATGGATTCGACCCTACTGCTATATATTTCAATTTACTGT
195 AATGTGAAATTAGATAACCAGTCCCTATGGATTCGACCCTACTGCTATATATTTCAATTTACTGT
* *
33135952 TATATTTGTCGTAGGAATTTATATTTGGTGGTTTCGACGTCCATCAGTGGCGATCTTTGATAAAA
260 TATATTTGCCGTAGGAATTTATATTTGGTGGTTTCGACGCCCATCAGTGGCGATCTTTGATAAAA
*
33136017 AGAATGCCTTTATGGCTCCCTTTGTTAGAAGGACACCTTTGTAGTGAGACTCTGAAAGGAAAGTC
325 AGAATGCCTTTATGGCTCCCTCTGTTAGAAGGACACCTTTGTAGTGAGACTCTGAAAGGAAAGTC
*
33136082 TTTGTGGCTATCTTTGTAAGGGAACGCCTTCATGGTGG
390 TCTGTGGCTATCTTTGTAAGGGAACGCCTTCATGGTGG
33136120 A
1 A
33136121 ATCTGAAGAA
Statistics
Matches: 416, Mismatches: 11, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
426 45 0.11
427 371 0.89
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (427 bp):
ACAATTTATTTCATTTTCTTAAATTTATTTTTGCATTTTTAAATATGTTTTTATTTTATTTTATT
ACACTTCATATTTCCTTTTTTATTATCTTAATCAATTTAGATATCCCATTTTTATTTATTTATTT
TAGCATTACTACGCAAAGGTCGTGGGCACGACTGTGACTGCGACAACGAACCTGGTCACAAGAAA
ATGTGAAATTAGATAACCAGTCCCTATGGATTCGACCCTACTGCTATATATTTCAATTTACTGTT
ATATTTGCCGTAGGAATTTATATTTGGTGGTTTCGACGCCCATCAGTGGCGATCTTTGATAAAAA
GAATGCCTTTATGGCTCCCTCTGTTAGAAGGACACCTTTGTAGTGAGACTCTGAAAGGAAAGTCT
CTGTGGCTATCTTTGTAAGGGAACGCCTTCATGGTGG
Found at i:33150809 original size:17 final size:17
Alignment explanation
Indices: 33150782--33150846 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
33150772 TCCTTATTGG
* *
33150782 TTTATTGATTTTTATCG
1 TTTATTTATTTTTATCA
* * *
33150799 TTTGTTTATTTTTCTTA
1 TTTATTTATTTTTATCA
33150816 TTTATTTATTTTTATCTCA
1 TTTATTTATTTTTA--TCA
*
33150835 ATTATTTATTTT
1 TTTATTTATTTT
33150847 ATGGTTCATC
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
17 24 0.65
19 13 0.35
ACGTcount: A:0.18, C:0.06, G:0.05, T:0.71
Consensus pattern (17 bp):
TTTATTTATTTTTATCA
Found at i:33153181 original size:79 final size:81
Alignment explanation
Indices: 33153045--33153229 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
33153035 TTGAATGATG
*
33153045 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33153109 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33153124 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33153186 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33153204 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33153230 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33153243 original size:40 final size:40
Alignment explanation
Indices: 33153046--33153229 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
33153036 TGAATGATGT
* * * *
33153046 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33153086 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33153126 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33153164 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33153205 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33153230 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33153251 original size:79 final size:79
Alignment explanation
Indices: 33153046--33153262 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
33153036 TGAATGATGT
** * * * **
33153046 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
33153109 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
33153126 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
33153191 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
33153205 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
33153263 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:33161116 original size:39 final size:40
Alignment explanation
Indices: 33161021--33161243 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
33161011 TTGAATGATG
*
33161021 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
33161059 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
33161100 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
33161139 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
33161178 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
33161217 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
33161244 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:33161207 original size:79 final size:81
Alignment explanation
Indices: 33161021--33161243 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
33161011 TTGAATGATG
* * *
33161021 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
33161083 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
33161100 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
33161161 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
33161178 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
33161242 TG
66 TG
33161244 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:33161265 original size:79 final size:79
Alignment explanation
Indices: 33161021--33161276 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
33161011 TTGAATGATG
* * * *
33161021 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
33161082 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
33161100 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
33161164 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
33161178 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
33161241 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
33161258 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33161277 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:33166338 original size:55 final size:55
Alignment explanation
Indices: 33166169--33166338 Score: 122
Period size: 55 Copynumber: 3.1 Consensus size: 55
33166159 AGCACGCCTA
**
33166169 AGAAAGAGTACACCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATG
1 AGAAAGAGTACGGCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATG
* * * ** * * * *
33166224 AGAAAGTTGTA-GG---AGAA--TTGATT-ATCTTTAAGACCACACCATATGTAA-TACCTA
1 AGAAAG-AGTACGGCCCAGAATTTTGGTTGAGCACTAAG---A-GCC-TAT-TAAGTGCATG
33166278 AGAAAGAGTACGGCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATG
1 AGAAAGAGTACGGCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATG
33166333 AGAAAG
1 AGAAAG
33166339 TTGTAGGAGA
Statistics
Matches: 80, Mismatches: 20, Indels: 30
0.62 0.15 0.23
Matches are distributed among these distances:
49 6 0.08
50 5 0.06
52 5 0.06
53 5 0.06
54 17 0.21
55 21 0.26
56 5 0.06
57 5 0.06
59 5 0.06
60 6 0.08
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (55 bp):
AGAAAGAGTACGGCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATG
Found at i:33166356 original size:109 final size:109
Alignment explanation
Indices: 33166165--33166385 Score: 424
Period size: 109 Copynumber: 2.0 Consensus size: 109
33166155 GAAGAGCACG
33166165 CCTAAGAAAGAGTACACCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATGAGAAAG
1 CCTAAGAAAGAGTACACCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATGAGAAAG
33166230 TTGTAGGAGAATTGATTATCTTTAAGACCACACCATATGTAATA
66 TTGTAGGAGAATTGATTATCTTTAAGACCACACCATATGTAATA
**
33166274 CCTAAGAAAGAGTACGGCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATGAGAAAG
1 CCTAAGAAAGAGTACACCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATGAGAAAG
33166339 TTGTAGGAGAATTGATTATCTTTAAGACCACACCATATGTAATA
66 TTGTAGGAGAATTGATTATCTTTAAGACCACACCATATGTAATA
33166383 CCT
1 CCT
33166386 CGAAAATTTT
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 110 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (109 bp):
CCTAAGAAAGAGTACACCCCAGAATTTTGGTTGAGCACTAAGAGCCTATTAAGTGCATGAGAAAG
TTGTAGGAGAATTGATTATCTTTAAGACCACACCATATGTAATA
Found at i:33167725 original size:57 final size:57
Alignment explanation
Indices: 33167651--33167759 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 57
33167641 GATCCTATCC
* *
33167651 TGATATAGTCCTCCCGAAGAATATGTGTGAAAA-AGATCTAGCCCGGATGGGTGATCT
1 TGATATAGCCCTCCCGAAGAATATGTGT-AAAATAGATCTAGCCCGGACGGGTGATCT
* *
33167708 TGATATAGCCCTCCCGAAGAATATGTGTAAAATGGATTTAGCCCGGACGGGT
1 TGATATAGCCCTCCCGAAGAATATGTGTAAAATAGATCTAGCCCGGACGGGT
33167760 AATCCGAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
56 4 0.09
57 43 0.91
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (57 bp):
TGATATAGCCCTCCCGAAGAATATGTGTAAAATAGATCTAGCCCGGACGGGTGATCT
Found at i:33167905 original size:54 final size:54
Alignment explanation
Indices: 33167832--33167969 Score: 267
Period size: 54 Copynumber: 2.6 Consensus size: 54
33167822 ATTGTCGTTG
33167832 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTATATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTATATGAGTTTATATTA
33167886 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTATATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTATATGAGTTTATATTA
*
33167940 CAGGGGATTTAGCCTGGACTAGTAATCCCG
1 CAGGGGATTTAGCCTGGACTGGTAATCCCG
33167970 CTGTAAGAAA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTATATGAGTTTATATTA
Found at i:33168240 original size:57 final size:57
Alignment explanation
Indices: 33168166--33168274 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 57
33168156 GATCCTATCC
* *
33168166 TGATATAGTCCTCCCGAAGAATATGTGTGAAAA-AGATCTAGCCCGGATGGGTGATCT
1 TGATATAGCCCTCCCGAAGAATATGTG-GAAAATAGATCTAGCCCGGACGGGTGATCT
* *
33168223 TGATATAGCCCTCCCGAAGAATATGTGGAAAATGGATTTAGCCCGGACGGGT
1 TGATATAGCCCTCCCGAAGAATATGTGGAAAATAGATCTAGCCCGGACGGGT
33168275 AATCCGAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
56 5 0.11
57 42 0.89
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (57 bp):
TGATATAGCCCTCCCGAAGAATATGTGGAAAATAGATCTAGCCCGGACGGGTGATCT
Found at i:33168509 original size:67 final size:67
Alignment explanation
Indices: 33168401--33168532 Score: 221
Period size: 67 Copynumber: 2.0 Consensus size: 67
33168391 GTTTATATTA
33168401 CAGGGGATTTAGCCTGGACTAGTAATCCCGCTGTAAGAAATGAGGTTCT-CGAGAGTATGCTCTC
1 CAGGGGATTTAGCCTGGACTAGTAATCCCGCTGTAAGAAATGAGGTT-TGCGAGAGTATGCTCTC
33168465 TTG
65 TTG
* * *
33168468 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTTGCGGGAGTGTGCTCTCT
1 CAGGGGATTTAGCCTGGACTAGTAATCCCGCTGTAAGAAATGAGGTTTGCGAGAGTATGCTCTCT
33168533 GAATTGAAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 1 0.02
67 60 0.98
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (67 bp):
CAGGGGATTTAGCCTGGACTAGTAATCCCGCTGTAAGAAATGAGGTTTGCGAGAGTATGCTCTCT
TG
Found at i:33171205 original size:24 final size:24
Alignment explanation
Indices: 33171167--33171226 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
33171157 GCTTATCCGG
33171167 GCAATATAACGGGTAGCTCCAAAGA
1 GCAAT-TAACGGGTAGCTCCAAAGA
**
33171192 GCAATTAACGGGTAGCTCTGAAGA
1 GCAATTAACGGGTAGCTCCAAAGA
*
33171216 GTAATTAACGG
1 GCAATTAACGG
33171227 AAGCACCAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 27 0.84
25 5 0.16
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.20
Consensus pattern (24 bp):
GCAATTAACGGGTAGCTCCAAAGA
Found at i:33171326 original size:26 final size:25
Alignment explanation
Indices: 33171268--33171333 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 25
33171258 AAGTGAGCAC
* * *
33171268 TAACGGGAAGCTTACAAAGAGCCTT
1 TAACGGGAAGCTCACAAAGAGCATA
*
33171293 TAATCGGGAAGCTCACGAAGAGCAATA
1 TAA-CGGGAAGCTCACAAAGAGC-ATA
*
33171320 TAACGGGACGCTCA
1 TAACGGGAAGCTCA
33171334 TAAGAGCTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.09
26 27 0.79
27 4 0.12
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (25 bp):
TAACGGGAAGCTCACAAAGAGCATA
Found at i:33173439 original size:25 final size:25
Alignment explanation
Indices: 33173356--33173444 Score: 106
Period size: 25 Copynumber: 3.5 Consensus size: 25
33173346 AAACCAAACC
* * ** *
33173356 AAGCTTTTGTGGCGAATTGGTTGGA
1 AAGCCTTTGTGGCGATTTATTTGGG
*
33173381 AAGCCTTTATGGCGATTTATTTGTGG
1 AAGCCTTTGTGGCGATTTATTTG-GG
*
33173407 AAGCCTTTGTGGCTATTTATTTGGG
1 AAGCCTTTGTGGCGATTTATTTGGG
33173432 AAGCCTTTGTGGC
1 AAGCCTTTGTGGC
33173445 AAGTTATCTG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
25 33 0.60
26 22 0.40
ACGTcount: A:0.18, C:0.12, G:0.30, T:0.39
Consensus pattern (25 bp):
AAGCCTTTGTGGCGATTTATTTGGG
Found at i:33173467 original size:25 final size:25
Alignment explanation
Indices: 33173439--33173492 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
33173429 GGGAAGCCTT
* * *
33173439 TGTGGCAAGTTATCTGTAAAGTCTA
1 TGTGGAAAGTTACCTGTAAAGGCTA
33173464 TGTGGAAAGTTACCTGTAAAGGCTA
1 TGTGGAAAGTTACCTGTAAAGGCTA
33173489 TGTG
1 TGTG
33173493 ACGTAATGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (25 bp):
TGTGGAAAGTTACCTGTAAAGGCTA
Found at i:33180365 original size:23 final size:23
Alignment explanation
Indices: 33180320--33180367 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
33180310 ATTGCTCGCG
* ***
33180320 TTCTATTTTGGTTACTTTTTTAT
1 TTCTATTTTGGTCACTAAATTAT
33180343 TTCTATTTTGGTCACTAAATTAT
1 TTCTATTTTGGTCACTAAATTAT
33180366 TT
1 TT
33180368 GAAATCAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.10, G:0.08, T:0.62
Consensus pattern (23 bp):
TTCTATTTTGGTCACTAAATTAT
Found at i:33181895 original size:8 final size:9
Alignment explanation
Indices: 33181874--33181905 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
33181864 TTTCTGAAAG
*
33181874 TTTTTATAT
1 TTTTTATAA
33181883 TTTTTATAA
1 TTTTTATAA
33181892 TTTTTATAA
1 TTTTTATAA
33181901 TTTTT
1 TTTTT
33181906 TTTAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTTATAA
Found at i:33189896 original size:13 final size:13
Alignment explanation
Indices: 33189841--33189896 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
33189831 AATATAAATG
33189841 GAAATAAT-AAAA
1 GAAATAATAAAAA
*
33189853 GAACAATAAATAAACA
1 G-A-AAT-AATAAAAA
*
33189869 -AAATAATAAAGA
1 GAAATAATAAAAA
33189881 GAAATAATAAAAA
1 GAAATAATAAAAA
33189894 GAA
1 GAA
33189897 GTCAGGGACC
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
12 8 0.22
13 18 0.50
14 4 0.11
15 3 0.08
16 3 0.08
ACGTcount: A:0.73, C:0.04, G:0.09, T:0.14
Consensus pattern (13 bp):
GAAATAATAAAAA
Found at i:33190645 original size:21 final size:21
Alignment explanation
Indices: 33190600--33190645 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
33190590 GAATAGAAAT
33190600 AAAATAAAAAAATAATAATAG
1 AAAATAAAAAAATAATAATAG
* *
33190621 -AAATGAAAAAA-AATATATTG
1 AAAATAAAAAAATAATA-ATAG
33190641 AAAAT
1 AAAAT
33190646 CTGAAATCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.22
Consensus pattern (21 bp):
AAAATAAAAAAATAATAATAG
Found at i:33191422 original size:129 final size:128
Alignment explanation
Indices: 33191255--33191544 Score: 447
Period size: 129 Copynumber: 2.2 Consensus size: 128
33191245 GGATTTGTGG
* * ** *
33191255 TTTTAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTACTCCACTACTG-CT
1 TTTTTGTCTGCTCTACTACTGCTT-AGGGAGATAAGACTTGATGCAATCTACTCCACTACTGTC-
33191319 TAGGGAGATAAGATCTGTAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTT
64 TAGGGAGATAAGATCTGTAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTT
*
33191384 TTTTTCGTCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCCACTACTGTCT
1 TTTTT-GTCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATGCAATCTACTCCACTACTGTCT
* *
33191449 AGGGAGATAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTT
65 AGGGAGATAAGATCTGTAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTT
* * *
33191513 TTTCTGTCTGCTCCACTACTGCTTAGAGAGAT
1 TTTTTGTCTGCTCTACTACTGCTTAGGGAGAT
33191545 CAGATCTGTA
Statistics
Matches: 148, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
128 25 0.17
129 106 0.72
130 17 0.11
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.34
Consensus pattern (128 bp):
TTTTTGTCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATGCAATCTACTCCACTACTGTCTA
GGGAGATAAGATCTGTAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTT
Found at i:33191482 original size:43 final size:42
Alignment explanation
Indices: 33191306--33191549 Score: 145
Period size: 44 Copynumber: 5.6 Consensus size: 42
33191296 ATGCGATCTA
*
33191306 CTCCACTACTGCTTAGGGAGATAAGATCTGTAGTTTTAATCCG
1 CTCCACTACTGCTTAGGGAGATAAGATTTGT-GTTTTAATCCG
* ** * * * **
33191349 CTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTTTCGTCTG
1 CTCCACTACTGCTT-AGGGAGATAAGATTTGTGTTTTAATC--C-G
* * * *
33191395 CTCTACTACTGCTTAGGGAGATAAGACTTGATG---CAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATTTG-TGTTTTAATCCG
33191435 CTCCACTACTG-TCTAGGGAGATAAGATTTGTGGTTTTAATCCG
1 CTCCACTACTGCT-TAGGGAGATAAGATTTGT-GTTTTAATCCG
* ** * * * ** *
33191478 CTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTCTGTCTG
1 CTCCACTACTGCTT-AGGGAGATAAGATTTG-TGTTTT-AATCCG
* *
33191523 CTCCACTACTGCTTAGAGAGATCAGAT
1 CTCCACTACTGCTTAGGGAGATAAGAT
33191550 CTGTAATCTT
Statistics
Matches: 147, Mismatches: 40, Indels: 27
0.69 0.19 0.13
Matches are distributed among these distances:
39 2 0.01
40 28 0.19
43 33 0.22
44 43 0.29
45 29 0.20
46 12 0.08
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (42 bp):
CTCCACTACTGCTTAGGGAGATAAGATTTGTGTTTTAATCCG
Found at i:33191588 original size:44 final size:44
Alignment explanation
Indices: 33191540--33191985 Score: 154
Period size: 44 Copynumber: 10.1 Consensus size: 44
33191530 ACTGCTTAGA
* *
33191540 GAGATCAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAAG
1 GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
* * * * * * *
33191584 GAGAT-AGAACTATCGA-CTTTAATGTACTCCACTG-TAATCTCAAG
1 GAGATAAGATCTGT-AATCTTCAATCTACTCCACTGCT--GCCCAAG
* * ** * * * ** *
33191628 GAGGTAAAATCTGCCATCTTCGACCTACTCCACTACTGCTTAGG
1 GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
* * *
33191672 GAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
1 GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
* * ** * * * *
33191716 GAGAT-AGAACTACTGGT-TTCAATGTACTCCACCG-TAATCTCAAG
1 GAGATAAGATCT-GTAATCTTCAATCTACTCCACTGCT--GCCCAAG
* * ** * * * * ** *
33191760 GAGGTAAAATCTGCCATTTTCGATCTGCTCCACTACTGCTTAGG
1 GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
* * *
33191804 GAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
1 GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
* * ** * * * *
33191848 GAGAT-AGAACTACTGGT-TTCAATGTACTCCACCG-TAATCTCAAG
1 GAGATAAGATCT-GTAATCTTCAATCTACTCCACTGCT--GCCCAAG
* * ** * * * * ** *
33191892 GAGGTAAAATCTGCCATTTTCGATCTGCTCCACTACTGCTTAGG
1 GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
* * *
33191936 GAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
1 GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
33191980 GAGATA
1 GAGATA
33191986 GAACTACCGG
Statistics
Matches: 275, Mismatches: 109, Indels: 36
0.65 0.26 0.09
Matches are distributed among these distances:
42 3 0.01
43 57 0.21
44 163 0.59
45 49 0.18
46 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
GAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCCAAG
Found at i:33191659 original size:132 final size:132
Alignment explanation
Indices: 33191519--33192035 Score: 869
Period size: 132 Copynumber: 3.9 Consensus size: 132
33191509 TTTTTTTCTG
* * * *
33191519 TCTGCTCCACTACTGCTTAGAGAGATCAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
* *
33191584 GAGATAGAACTA-TCGACTTT-AATGTACTCCACTGTAATCTCAAGGAGGTAAAATCTGCCATCT
66 GAGATAGAACTACT-G-CTTTCAATGTACTCCACCGTAATCTCAAGGAGGTAAAATCTGCCATTT
33191647 TCGA
129 TCGA
* *
33191651 CCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
*
33191716 GAGATAGAACTACTGGTTTCAATGTACTCCACCGTAATCTCAAGGAGGTAAAATCTGCCATTTTC
66 GAGATAGAACTACTGCTTTCAATGTACTCCACCGTAATCTCAAGGAGGTAAAATCTGCCATTTTC
33191781 GA
131 GA
33191783 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
*
33191848 GAGATAGAACTACTGGTTTCAATGTACTCCACCGTAATCTCAAGGAGGTAAAATCTGCCATTTTC
66 GAGATAGAACTACTGCTTTCAATGTACTCCACCGTAATCTCAAGGAGGTAAAATCTGCCATTTTC
33191913 GA
131 GA
33191915 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
* * *
33191980 GAGATAGAACTACCGGC-TTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCT
66 GAGATAGAACTA-CTGCTTTCAATGTACTCCACCGTAATCTCAAGGAGGTAAAATCT
33192036 ACTATCGACT
Statistics
Matches: 367, Mismatches: 15, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
131 3 0.01
132 361 0.98
133 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTGCCCAGG
GAGATAGAACTACTGCTTTCAATGTACTCCACCGTAATCTCAAGGAGGTAAAATCTGCCATTTTC
GA
Found at i:33193147 original size:16 final size:16
Alignment explanation
Indices: 33193105--33193148 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
33193095 GGCCTCTCCT
*
33193105 TTTTCTTTTTCACTCA
1 TTTTCTTTTTCACTAA
*
33193121 TTTTCTTTTTTTCATTAA
1 TTTTC--TTTTTCACTAA
33193139 TTTTCTTTTT
1 TTTTCTTTTT
33193149 TTTCAAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTCTTTTTCACTAA
Found at i:33193153 original size:19 final size:18
Alignment explanation
Indices: 33193110--33193150 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
33193100 CTCCTTTTTC
*
33193110 TTTTTCACTCATTTTCTT
1 TTTTTCACTAATTTTCTT
*
33193128 TTTTTCATTAATTTTCTT
1 TTTTTCACTAATTTTCTT
33193146 TTTTT
1 TTTTT
33193151 TCAAGTGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTCACTAATTTTCTT
Found at i:33194966 original size:80 final size:80
Alignment explanation
Indices: 33194841--33194990 Score: 300
Period size: 80 Copynumber: 1.9 Consensus size: 80
33194831 TGTGCTTTGG
33194841 GGTTGATCTCTTGATGCCTTCTCCCGCATCTATCTTCCCACTTCTTATTGCATTTTCAATCATTT
1 GGTTGATCTCTTGATGCCTTCTCCCGCATCTATCTTCCCACTTCTTATTGCATTTTCAATCATTT
33194906 CACCATTTGCTTTAA
66 CACCATTTGCTTTAA
33194921 GGTTGATCTCTTGATGCCTTCTCCCGCATCTATCTTCCCACTTCTTATTGCATTTTCAATCATTT
1 GGTTGATCTCTTGATGCCTTCTCCCGCATCTATCTTCCCACTTCTTATTGCATTTTCAATCATTT
33194986 CACCA
66 CACCA
33194991 GACATCACTA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.17, C:0.30, G:0.10, T:0.43
Consensus pattern (80 bp):
GGTTGATCTCTTGATGCCTTCTCCCGCATCTATCTTCCCACTTCTTATTGCATTTTCAATCATTT
CACCATTTGCTTTAA
Found at i:33195121 original size:33 final size:33
Alignment explanation
Indices: 33195084--33195149 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
33195074 CATCGTGGTT
* * *
33195084 TCTTTCTCTAAAAGAGGTGGCTGGACCTGTGTC
1 TCTTTCTCCAAAAGAAGTGGCTGAACCTGTGTC
*
33195117 TCTTTCTCCAAAAGAAGTGGTTGAACCTGTGTC
1 TCTTTCTCCAAAAGAAGTGGCTGAACCTGTGTC
33195150 GCGATCTCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (33 bp):
TCTTTCTCCAAAAGAAGTGGCTGAACCTGTGTC
Found at i:33197864 original size:127 final size:129
Alignment explanation
Indices: 33197615--33197856 Score: 280
Period size: 127 Copynumber: 1.9 Consensus size: 129
33197605 GCCTCGCTTT
*
33197615 GAAATTTCGAAAGGATATTCGGCTATTTAGAATCAACGAGAAAAATCGAAGCCCAGTAAGTTAGG
1 GAAATTTCAAAAGGATATTCGGCTATTTAGAATCAACGAGAAAAATCGAAGCCCAGTAAGTTAGG
* * * * * *
33197680 GCACGATTGCTCGAATTTTCTAAATATAGAATATTACCTTTATTTTTGAAATTTTACGTGTTTG
66 GCACAATTGCTCGAATTTCCAAAACATAGAACATTACCTTTATTCTTGAAATTTTACGTGTTTG
** ** *
33197744 GAAATTT-AAAAGGATATTTTGCTATTTAGGTTCAACGAG-AAAATTG-AGACCCAGTAAGTTAG
1 GAAATTTCAAAAGGATATTCGGCTATTTAGAATCAACGAGAAAAATCGAAG-CCCAGTAAGTTAG
* * * *
33197806 GGTACAATTTCTCGAATTTCCAAAACGT-GAAACATTGCC-TTA-TCTTGAAAT
65 GGCACAATTGCTCGAATTTCCAAAACATAG-AACATTACCTTTATTCTTGAAAT
33197857 GTGTTACGAA
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
125 8 0.08
126 6 0.06
127 47 0.49
128 27 0.28
129 7 0.07
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (129 bp):
GAAATTTCAAAAGGATATTCGGCTATTTAGAATCAACGAGAAAAATCGAAGCCCAGTAAGTTAGG
GCACAATTGCTCGAATTTCCAAAACATAGAACATTACCTTTATTCTTGAAATTTTACGTGTTTG
Found at i:33198338 original size:13 final size:13
Alignment explanation
Indices: 33198283--33198338 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
33198273 AATATAAATG
33198283 GAAATAAT-AAAA
1 GAAATAATAAAAA
*
33198295 GAACAATAAATAAACA
1 G-A-AAT-AATAAAAA
*
33198311 -AAATAATAAAGA
1 GAAATAATAAAAA
33198323 GAAATAATAAAAA
1 GAAATAATAAAAA
33198336 GAA
1 GAA
33198339 GTCAGGGACC
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
12 8 0.22
13 18 0.50
14 4 0.11
15 3 0.08
16 3 0.08
ACGTcount: A:0.73, C:0.04, G:0.09, T:0.14
Consensus pattern (13 bp):
GAAATAATAAAAA
Found at i:33201406 original size:13 final size:13
Alignment explanation
Indices: 33201388--33201414 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33201378 TTTCGGTTTA
33201388 ATTTAAACAATAT
1 ATTTAAACAATAT
33201401 ATTTAAACAATAT
1 ATTTAAACAATAT
33201414 A
1 A
33201415 GTTGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTTAAACAATAT
Found at i:33203503 original size:18 final size:17
Alignment explanation
Indices: 33203475--33203509 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33203465 ATTATTAAGA
*
33203475 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
33203492 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
33203510 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:33203629 original size:16 final size:16
Alignment explanation
Indices: 33203608--33203649 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
33203598 TTATTAAATT
*
33203608 ATATATTTTAATTATA
1 ATATATTTTAATAATA
33203624 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
33203639 AT-TATGTTTAA
1 ATATAT-TTTAA
33203650 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:33203634 original size:15 final size:15
Alignment explanation
Indices: 33203599--33203640 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
33203589 TTAAGAATTT
*
33203599 TATTAAATTAT-ATA
1 TATTTAATTATAATA
33203613 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
33203627 TATTTAATAATAAT
1 TATTTAATTATAAT
33203641 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:33203761 original size:156 final size:157
Alignment explanation
Indices: 33203583--33203898 Score: 562
Period size: 156 Copynumber: 2.0 Consensus size: 157
33203573 ATAAGAATAT
*
33203583 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
** * *
33203648 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAAAATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
33203713 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
33203740 TAATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
33203804 AAATATGATTAAAAAATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAAAATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
33203869 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
33203896 TAA
1 TAA
33203899 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
156 146 0.96
157 6 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAAAATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:33203779 original size:18 final size:17
Alignment explanation
Indices: 33203751--33203785 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33203741 AATTATAAGA
*
33203751 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
33203768 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
33203786 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:33204042 original size:16 final size:16
Alignment explanation
Indices: 33204021--33204056 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
33204011 GATTTGCTAT
33204021 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
33204037 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
33204053 TACA
1 TACA
33204057 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:33206160 original size:15 final size:15
Alignment explanation
Indices: 33206137--33206167 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33206127 CATCAAAATA
33206137 AAATAAAATATAATT
1 AAATAAAATATAATT
*
33206152 AAATTAAATATAATT
1 AAATAAAATATAATT
33206167 A
1 A
33206168 TATATATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AAATAAAATATAATT
Found at i:33209236 original size:84 final size:84
Alignment explanation
Indices: 33209135--33209302 Score: 309
Period size: 84 Copynumber: 2.0 Consensus size: 84
33209125 GATAAAAATT
*
33209135 AAGCTTATTTTAAGAAAGGGGTAAACTGTAAAGCTTAATTATTAATTTCATACATTAAGGACCAA
1 AAGCTTAGTTTAAGAAAGGGGTAAACTGTAAAGCTTAATTATTAATTTCATACATTAAGGACCAA
33209200 ATTGAATAAAATGAAAAAA
66 ATTGAATAAAATGAAAAAA
*
33209219 AAGCTTAGTTTAAGAAAGGGGTAAACTGTAAAGCTTAATTATTAATTTCATACATTAAGGGCCAA
1 AAGCTTAGTTTAAGAAAGGGGTAAACTGTAAAGCTTAATTATTAATTTCATACATTAAGGACCAA
*
33209284 ATTGAATAAAATGCAAAAA
66 ATTGAATAAAATGAAAAAA
33209303 TGCCATGAAA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.29
Consensus pattern (84 bp):
AAGCTTAGTTTAAGAAAGGGGTAAACTGTAAAGCTTAATTATTAATTTCATACATTAAGGACCAA
ATTGAATAAAATGAAAAAA
Found at i:33213394 original size:27 final size:27
Alignment explanation
Indices: 33213364--33213415 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
33213354 TGAAATGTGC
33213364 AGGGGTTGCTAAGTGCTGATTCCCCCA
1 AGGGGTTGCTAAGTGCTGATTCCCCCA
**
33213391 AGGGGTTGCTGTGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
33213416 GATTCATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCA
Found at i:33220293 original size:31 final size:31
Alignment explanation
Indices: 33220258--33220357 Score: 105
Period size: 31 Copynumber: 3.2 Consensus size: 31
33220248 AAAATTTCTG
33220258 AAAATTTAAATTAAGCCTCTCATAATTTTTA
1 AAAATTTAAATTAAGCCTCTCATAATTTTTA
* * * * *
33220289 AAAA-TTATTATCAAGCCT-TTAAAAGGTTTTA
1 AAAATTTA-AATTAAGCCTCTCATAA-TTTTTA
* *
33220320 AAAGTTTGAATTAAGCCTCTCATAATTTTTA
1 AAAATTTAAATTAAGCCTCTCATAATTTTTA
33220351 AAAATTT
1 AAAATTT
33220358 TAGAAATTCT
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
30 7 0.13
31 39 0.75
32 6 0.12
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (31 bp):
AAAATTTAAATTAAGCCTCTCATAATTTTTA
Found at i:33221065 original size:24 final size:24
Alignment explanation
Indices: 33221037--33221088 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
33221027 TTTCTAGAAG
* *
33221037 ATTTAATATTTATGAGTATAATAT
1 ATTTAACATTTATGAGCATAATAT
* *
33221061 ATTTAGCATTTATTAGCATAATAT
1 ATTTAACATTTATGAGCATAATAT
33221085 ATTT
1 ATTT
33221089 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAACATTTATGAGCATAATAT
Found at i:33227425 original size:19 final size:20
Alignment explanation
Indices: 33227381--33227431 Score: 77
Period size: 19 Copynumber: 2.5 Consensus size: 20
33227371 TCAAGGATGA
33227381 GCAATCTTAGATATGATATAT
1 GCAATCTTAGATATGA-ATAT
*
33227402 ACAATCTTAGATATG-ATAT
1 GCAATCTTAGATATGAATAT
33227421 GCAATCTTAGA
1 GCAATCTTAGA
33227432 AGATGTGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 14 0.50
21 14 0.50
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (20 bp):
GCAATCTTAGATATGAATAT
Found at i:33227683 original size:23 final size:23
Alignment explanation
Indices: 33227635--33227683 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
33227625 GCGTTCTTAT
* *
33227635 TTTATTGATTTGTGTATAATTTA
1 TTTATTGATTTGTATATAATTGA
**
33227658 TTTATTGATTTGTATATTGTTGA
1 TTTATTGATTTGTATATAATTGA
33227681 TTT
1 TTT
33227684 CAAATATCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.14, T:0.63
Consensus pattern (23 bp):
TTTATTGATTTGTATATAATTGA
Found at i:33240839 original size:28 final size:28
Alignment explanation
Indices: 33240807--33240933 Score: 112
Period size: 28 Copynumber: 4.5 Consensus size: 28
33240797 TTAATAAGTA
*
33240807 CGCACACTTAGTGCTTAATAATCACACT
1 CGCACACTTAGTGCTTAACAATCACACT
* * * *
33240835 CGCACACTTAGTGCTTTACCATTATACT
1 CGCACACTTAGTGCTTAACAATCACACT
* * * *
33240863 CGCACACTTAGTGCTTTACCATTATACT
1 CGCACACTTAGTGCTTAACAATCACACT
* * * * *
33240891 CTCACACTTAATGCATT-TCAATTAAACT
1 CGCACACTTAGTGC-TTAACAATCACACT
33240919 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33240934 AATCTCATTA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
27 1 0.01
28 83 0.97
29 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAACAATCACACT
Found at i:33240897 original size:56 final size:56
Alignment explanation
Indices: 33240807--33240933 Score: 157
Period size: 56 Copynumber: 2.3 Consensus size: 56
33240797 TTAATAAGTA
* * * *
33240807 CGCACACTTAGTGCTTAATAATCACACTCGCACACTTAGTGC-TTTACCATTATACT
1 CGCACACTTAGTGCTTAACAATCACACTCGCACACTTAATGCATTT-CAATTAAACT
* * * * *
33240863 CGCACACTTAGTGCTTTACCATTATACTCTCACACTTAATGCATTTCAATTAAACT
1 CGCACACTTAGTGCTTAACAATCACACTCGCACACTTAATGCATTTCAATTAAACT
33240919 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33240934 AATCTCATTA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 58 0.95
57 3 0.05
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (56 bp):
CGCACACTTAGTGCTTAACAATCACACTCGCACACTTAATGCATTTCAATTAAACT
Found at i:33243766 original size:25 final size:23
Alignment explanation
Indices: 33243731--33243823 Score: 89
Period size: 25 Copynumber: 3.9 Consensus size: 23
33243721 TTACCGATTC
* *
33243731 CAGCTCTTATGAGCTTATCAATACT
1 CAGCTCGTATGAGCTTA-CATTA-T
33243756 CAGCTCGTATGAGCTTACCATTATT
1 CAGCTCGTATGAGCTTA-CATTA-T
* *
33243781 CAGCTCGGAGGAGCTTACTATTAT
1 CAGCTCGTATGAGCTTAC-ATTAT
*
33243805 C-GCTCGTATGAGCATACAT
1 CAGCTCGTATGAGCTTACAT
33243824 GTACAGGAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
22 2 0.03
23 13 0.22
24 3 0.05
25 40 0.69
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACATTAT
Found at i:33246600 original size:105 final size:105
Alignment explanation
Indices: 33246418--33246633 Score: 362
Period size: 105 Copynumber: 2.1 Consensus size: 105
33246408 CTAACCTTGT
* *
33246418 TTCGTTAAAAAGGCCACATTGAATTTGGTTAACTCCCTAAATCCTAGCTCCCATTGCATTTTTTA
1 TTCGTTAAAAAAGCCACATTGAATTTGGTTAACTCCCTAAATCCTAGCTCCAATTGCATTTTTTA
*
33246483 TCTGCACATCAAACTCCACTGGCACCAATGTATGCCTTTA
66 TCTGCACATCAAACTCCACTGGCACCAATGTATGCATTTA
33246523 TTCGTTAAAAAAGCCACATTGAATTTGGTTAACTCCCTAAATCCTAGC-CCTAATTGCATTTTTT
1 TTCGTTAAAAAAGCCACATTGAATTTGGTTAACTCCCTAAATCCTAGCTCC-AATTGCATTTTTT
* * *
33246587 ATCTGCACATCAAACTCTAGTGGTACCAATGTATGCATTTA
65 ATCTGCACATCAAACTCCACTGGCACCAATGTATGCATTTA
33246628 TTCGTT
1 TTCGTT
33246634 TTCTCATTAC
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 2 0.02
105 102 0.98
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (105 bp):
TTCGTTAAAAAAGCCACATTGAATTTGGTTAACTCCCTAAATCCTAGCTCCAATTGCATTTTTTA
TCTGCACATCAAACTCCACTGGCACCAATGTATGCATTTA
Found at i:33260329 original size:27 final size:27
Alignment explanation
Indices: 33260292--33260345 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
33260282 AATTTCTCAA
33260292 CAACTGACTATATACATACACACCATT
1 CAACTGACTATATACATACACACCATT
33260319 CAACTGACTATATACATACACACCATT
1 CAACTGACTATATACATACACACCATT
33260346 ATACTTCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.30, G:0.04, T:0.26
Consensus pattern (27 bp):
CAACTGACTATATACATACACACCATT
Found at i:33265295 original size:39 final size:39
Alignment explanation
Indices: 33265241--33265319 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
33265231 AAGTGGGAAG
33265241 TAAGACGTTGACAAATGATCTCTCTCTCTCTCAAATTTA
1 TAAGACGTTGACAAATGATCTCTCTCTCTCTCAAATTTA
33265280 TAAGACGTTGACAAATGATCTCTCTCTCTCTCAAATTTA
1 TAAGACGTTGACAAATGATCTCTCTCTCTCTCAAATTTA
33265319 T
1 T
33265320 GAATGGAATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (39 bp):
TAAGACGTTGACAAATGATCTCTCTCTCTCTCAAATTTA
Found at i:33265823 original size:64 final size:66
Alignment explanation
Indices: 33265690--33265827 Score: 235
Period size: 66 Copynumber: 2.1 Consensus size: 66
33265680 GTTTTACCTA
*
33265690 AACCCTAAGAAAAATCTAGCCCAAATGAGGAAAAAACCCTAAACAAATAGAAAACGAATACAAGC
1 AACCCTAAGAAAAATCTAGCCCAAATGAGAAAAAAACCCTAAACAAATAGAAAACGAATACAAGC
33265755 T
66 T
* *
33265756 AACCCTAAGAAAAATCTAGCCCCAATGA-AAAAAAACCCTAAACAAATAG-AAATGAATACAAGC
1 AACCCTAAGAAAAATCTAGCCCAAATGAGAAAAAAACCCTAAACAAATAGAAAACGAATACAAGC
33265819 T
66 T
33265820 AACCCTAA
1 AACCCTAA
33265828 ACCCACCCAC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
64 22 0.32
65 20 0.29
66 27 0.39
ACGTcount: A:0.54, C:0.22, G:0.10, T:0.13
Consensus pattern (66 bp):
AACCCTAAGAAAAATCTAGCCCAAATGAGAAAAAAACCCTAAACAAATAGAAAACGAATACAAGC
T
Found at i:33266261 original size:18 final size:19
Alignment explanation
Indices: 33266205--33266252 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
33266195 GAAGTACTTC
33266205 AAGTCAATTTTAAAATCAA
1 AAGTCAATTTTAAAATCAA
33266224 AAGTCAATTTTAAAATCAA
1 AAGTCAATTTTAAAATCAA
33266243 AAGTCAATTT
1 AAGTCAATTT
33266253 AAATACAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (19 bp):
AAGTCAATTTTAAAATCAA
Found at i:33269916 original size:22 final size:21
Alignment explanation
Indices: 33269886--33269928 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
33269876 ATATCATATC
33269886 TTTAATAAA-ATTTATATTTCAT
1 TTTAATAAAGA-TTAT-TTTCAT
*
33269908 TTTATTAAAGATTATTTTCAT
1 TTTAATAAAGATTATTTTCAT
33269929 GAATGAGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 6 0.32
22 12 0.63
23 1 0.05
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTAATAAAGATTATTTTCAT
Found at i:33271892 original size:33 final size:34
Alignment explanation
Indices: 33271815--33271902 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 34
33271805 TCTTTGTTCA
* * *
33271815 TCTTTGTTATATTAATATGAATTTTATGAGTTTTT
1 TCTTTG-TATATTGATATAAATTTTATGAGTTTTG
*
33271850 TCTTTGTATATTGATATAAATTTTCTGAG-TTTG
1 TCTTTGTATATTGATATAAATTTTATGAGTTTTG
* *
33271883 TCTTTGTATAATGAAATAAA
1 TCTTTGTATATTGATATAAA
33271903 ACTTCTATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 21 0.45
34 20 0.43
35 6 0.13
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (34 bp):
TCTTTGTATATTGATATAAATTTTATGAGTTTTG
Found at i:33275556 original size:12 final size:12
Alignment explanation
Indices: 33275539--33275581 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
33275529 CTAAGACCCT
33275539 CCACACGACTTG
1 CCACACGACTTG
33275551 CCACACGACTTG
1 CCACACGACTTG
33275563 CCACACGACTTG
1 CCACACGACTTG
33275575 CCACACG
1 CCACACG
33275582 GCCGTGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.26, C:0.44, G:0.16, T:0.14
Consensus pattern (12 bp):
CCACACGACTTG
Found at i:33275814 original size:29 final size:28
Alignment explanation
Indices: 33275781--33275886 Score: 113
Period size: 28 Copynumber: 3.7 Consensus size: 28
33275771 TCTTTGATTT
* *
33275781 TTTTTAGATTTTTATAGTTTTACCCTTGA
1 TTTTTAGA-TTTTATAATTTTACCCTTAA
* * * *
33275810 TTTTTAAATTTTACAAATTTACCCATAA
1 TTTTTAGATTTTATAATTTTACCCTTAA
* *
33275838 TTTTTAGATTTTATAATTTTGCCCTAAA
1 TTTTTAGATTTTATAATTTTACCCTTAA
*
33275866 TTTTTTAGATTTTATAGTTTT
1 -TTTTTAGATTTTATAATTTT
33275887 GTCTCTTATT
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
28 37 0.59
29 26 0.41
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.57
Consensus pattern (28 bp):
TTTTTAGATTTTATAATTTTACCCTTAA
Found at i:33275822 original size:28 final size:28
Alignment explanation
Indices: 33275781--33275919 Score: 100
Period size: 28 Copynumber: 4.9 Consensus size: 28
33275771 TCTTTGATTT
* *
33275781 TTTTTAGATTTTTATAGTTTTACCCTTGA
1 TTTTTA-AATTTTATAGTTTTACCCTTAA
* ** *
33275810 TTTTTAAATTTTACAAATTTACCCATAA
1 TTTTTAAATTTTATAGTTTTACCCTTAA
* * * *
33275838 TTTTTAGATTTTATAATTTTGCCCTAAA
1 TTTTTAAATTTTATAGTTTTACCCTTAA
* * *
33275866 TTTTTTAGATTTTATAGTTTTGTCTCTT-A
1 -TTTTTAAATTTTATAGTTTT-ACCCTTAA
* *
33275895 TTTTTCAAATTTTACAGTTTGACCC
1 TTTTT-AAATTTTATAGTTTTACCC
33275920 AAAATTTTAT
Statistics
Matches: 86, Mismatches: 21, Indels: 7
0.75 0.18 0.06
Matches are distributed among these distances:
28 45 0.52
29 38 0.44
30 3 0.03
ACGTcount: A:0.26, C:0.12, G:0.07, T:0.55
Consensus pattern (28 bp):
TTTTTAAATTTTATAGTTTTACCCTTAA
Found at i:33275887 original size:29 final size:29
Alignment explanation
Indices: 33275721--33275887 Score: 103
Period size: 28 Copynumber: 5.8 Consensus size: 29
33275711 TGTGTCCCTT
33275721 ATTTTTTAGATTTTATAGTTTTGCCCCT--
1 ATTTTTTAGATTTTATAGTTTTG-CCCTAA
* * * ** *
33275749 ATTTTTTAAAATTTAAAAGTTTT-CTTTGAT
1 ATTTTTT-AGATTTTATAGTTTTGCCCT-AA
* * **
33275779 TTTTTTTAGATTTTTATAGTTTTACCCTTG
1 ATTTTTTAGA-TTTTATAGTTTTGCCCTAA
* * ** *
33275809 A-TTTTTAAATTTTACAAATTTACCC-ATA
1 ATTTTTTAGATTTTATAGTTTTGCCCTA-A
*
33275837 A-TTTTTAGATTTTATAATTTTGCCCTAA
1 ATTTTTTAGATTTTATAGTTTTGCCCTAA
33275865 ATTTTTTAGATTTTATAGTTTTG
1 ATTTTTTAGATTTTATAGTTTTG
33275888 TCTCTTATTT
Statistics
Matches: 105, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
27 2 0.02
28 43 0.41
29 42 0.40
30 16 0.15
31 2 0.02
ACGTcount: A:0.26, C:0.09, G:0.08, T:0.57
Consensus pattern (29 bp):
ATTTTTTAGATTTTATAGTTTTGCCCTAA
Found at i:33275897 original size:29 final size:29
Alignment explanation
Indices: 33275713--33275914 Score: 119
Period size: 29 Copynumber: 7.0 Consensus size: 29
33275703 CACGGCCGTG
33275713 TGTCCCTTATTTTTTAGATTTTATAGTTT
1 TGTCCCTTATTTTTTAGATTTTATAGTTT
* * * *
33275742 TG-CCCCTATTTTTTAAAATTTAAAAGTTT
1 TGTCCCTTATTTTTT-AGATTTTATAGTTT
* ***
33275771 TCTTTGATT-TTTTTTAGATTTTTATAGTTT
1 T-GTCCCTTATTTTTTAGA-TTTTATAGTTT
* * * **
33275801 T-ACCCTTGA-TTTTTAAATTTTACAAATT
1 TGTCCCTT-ATTTTTTAGATTTTATAGTTT
* * * *
33275829 T-ACCCATAATTTTTAGATTTTATAATTT
1 TGTCCCTTATTTTTTAGATTTTATAGTTT
*
33275857 TG-CCCTAAATTTTTTAGATTTTATAGTTT
1 TGTCCCT-TATTTTTTAGATTTTATAGTTT
* * * *
33275886 TGTCTCTTATTTTTCAAATTTTACAGTTT
1 TGTCCCTTATTTTTTAGATTTTATAGTTT
33275915 GACCCAAAAT
Statistics
Matches: 130, Mismatches: 33, Indels: 20
0.71 0.18 0.11
Matches are distributed among these distances:
27 1 0.01
28 47 0.36
29 62 0.48
30 19 0.15
31 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.07, T:0.57
Consensus pattern (29 bp):
TGTCCCTTATTTTTTAGATTTTATAGTTT
Found at i:33276571 original size:85 final size:85
Alignment explanation
Indices: 33276422--33276666 Score: 348
Period size: 85 Copynumber: 2.9 Consensus size: 85
33276412 GTTTAATCTA
* * * * *
33276422 CAAATGGTGTGGTTCCATTATGAAGTAAGTGGTAGTTTGTTTAATTTGCAAATATGTTGTGCACT
1 CAAAT-GTGTGGTTCGATTATGAAATAAGTGGCATTTTGTTTAATCTGCAAATATGTTGTGCACT
* **
33276487 CACAAGAAGTGGCGGCAACTG
65 CACAACAAGTGGCAACAACTG
33276508 CAAATGTGTGGTTCGATTATGAAATAAGTGGCATTTTGTTTAATCTGCAAATATGTTGTGCACTC
1 CAAATGTGTGGTTCGATTATGAAATAAGTGGCATTTTGTTTAATCTGCAAATATGTTGTGCACTC
33276573 ACAACAAGTGGCAACAACTG
66 ACAACAAGTGGCAACAACTG
* * ** * *
33276593 TAAATATGTGGTTCGA-TATGAACCATGTGGCATTTTGTTTAATCTGCAAATATGTTGTGCACCC
1 CAAATGTGTGGTTCGATTATGAAATAAGTGGCATTTTGTTTAATCTGCAAATATGTTGTGCACTC
33276657 ACAACAAGTG
66 ACAACAAGTG
33276667 ATAGTAACTG
Statistics
Matches: 145, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
84 54 0.37
85 86 0.59
86 5 0.03
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (85 bp):
CAAATGTGTGGTTCGATTATGAAATAAGTGGCATTTTGTTTAATCTGCAAATATGTTGTGCACTC
ACAACAAGTGGCAACAACTG
Found at i:33278817 original size:10 final size:10
Alignment explanation
Indices: 33278776--33278847 Score: 78
Period size: 10 Copynumber: 7.2 Consensus size: 10
33278766 CCTATCTATA
*
33278776 AATAATAAAG
1 AATAATAAAT
33278786 AA-AATAAAGT
1 AATAATAAA-T
*
33278796 AA-AGAAAAAT
1 AATA-ATAAAT
33278806 AATAATAAAT
1 AATAATAAAT
33278816 AATAATAAAT
1 AATAATAAAT
33278826 AATAATAAAT
1 AATAATAAAT
33278836 AAATAA-AAAT
1 -AATAATAAAT
33278846 AA
1 AA
33278848 AAATTGGGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
9 8 0.15
10 37 0.67
11 10 0.18
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (10 bp):
AATAATAAAT
Found at i:33282803 original size:21 final size:19
Alignment explanation
Indices: 33282753--33282791 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
33282743 CAGCTTCCCT
33282753 TGAGAGGTCAATTTCTCGA
1 TGAGAGGTCAATTTCTCGA
33282772 TGAGAGGTCAATTTCTCGA
1 TGAGAGGTCAATTTCTCGA
33282791 T
1 T
33282792 CGATGTGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (19 bp):
TGAGAGGTCAATTTCTCGA
Found at i:33287694 original size:21 final size:21
Alignment explanation
Indices: 33287648--33287694 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
33287638 CTCGCTAGTT
* *
33287648 TTTTTTTTAAAATAGACTAAA
1 TTTTTTCTAAAATAGAATAAA
33287669 TTTTTTCTAAAATA-AATAAA
1 TTTTTTCTAAAATAGAATAAA
*
33287689 TGTTTT
1 TTTTTT
33287695 AAATTGACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTTTTCTAAAATAGAATAAA
Found at i:33290496 original size:133 final size:133
Alignment explanation
Indices: 33290258--33290523 Score: 523
Period size: 133 Copynumber: 2.0 Consensus size: 133
33290248 ATAACGTTGA
*
33290258 GGTTGTTATACAAAAGATATTAATGATAATGATTGAATTTTATTAAATTAATTGTTCAAAAAATT
1 GGTTGTTATACAAAAGATATTAATGATAATGATTGAATTTTATTAAATTAATTGTTCAAAAAACT
33290323 ACAAGTTCGAGATAAAGGATCTTGGTACAACTAAGAAAATTTTAGGATGGAAATTTCCAGAAATA
66 ACAAGTTCGAGATAAAGGATCTTGGTACAACTAAGAAAATTTTAGGATGGAAATTTCCAGAAATA
33290388 GAC
131 GAC
33290391 GGTTGTTATACAAAAGATATTAATGATAATGATTGAATTTTATTAAATTAATTGTTCAAAAAACT
1 GGTTGTTATACAAAAGATATTAATGATAATGATTGAATTTTATTAAATTAATTGTTCAAAAAACT
33290456 ACAAGTTCGAGATAAAGGATCTTGGTACAACTAAGAAAATTTTAGGATGGAAATTTCCAGAAATA
66 ACAAGTTCGAGATAAAGGATCTTGGTACAACTAAGAAAATTTTAGGATGGAAATTTCCAGAAATA
33290521 GAC
131 GAC
33290524 ACTCCGGGAA
Statistics
Matches: 132, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 132 1.00
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.33
Consensus pattern (133 bp):
GGTTGTTATACAAAAGATATTAATGATAATGATTGAATTTTATTAAATTAATTGTTCAAAAAACT
ACAAGTTCGAGATAAAGGATCTTGGTACAACTAAGAAAATTTTAGGATGGAAATTTCCAGAAATA
GAC
Found at i:33292954 original size:34 final size:34
Alignment explanation
Indices: 33292916--33292983 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
33292906 CGTCTAGTGG
* * *
33292916 ATAGTATCGCCTAGCGGACAGTATTGCCTGGCGA
1 ATAGTATAGCCTAGCGGACAGAATTACCTGGCGA
* * *
33292950 ATAGTATAGCTTGGCGGATAGAATTACCTGGCGA
1 ATAGTATAGCCTAGCGGACAGAATTACCTGGCGA
33292984 GTAGGATTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (34 bp):
ATAGTATAGCCTAGCGGACAGAATTACCTGGCGA
Found at i:33292955 original size:17 final size:17
Alignment explanation
Indices: 33292916--33292997 Score: 56
Period size: 17 Copynumber: 4.8 Consensus size: 17
33292906 CGTCTAGTGG
* * *
33292916 ATAGTATCGCCTAGCGG
1 ATAGTATTGCCTGGCGA
*
33292933 ACAGTATTGCCTGGCGA
1 ATAGTATTGCCTGGCGA
* * *
33292950 ATAGTATAGCTTGGCGG
1 ATAGTATTGCCTGGCGA
* *
33292967 ATAGAATTACCTGGCGA
1 ATAGTATTGCCTGGCGA
* * *
33292984 GTAGGATTACCTGG
1 ATAGTATTGCCTGG
33292998 TGGATACGAT
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (17 bp):
ATAGTATTGCCTGGCGA
Found at i:33293144 original size:125 final size:125
Alignment explanation
Indices: 33292917--33293173 Score: 435
Period size: 125 Copynumber: 2.1 Consensus size: 125
33292907 GTCTAGTGGA
* *
33292917 TAGTA-TCGCCTAGCGGACAGTATTGCCTGGCGAATAGTATAGCTTGGCGGATAGAATTACCTGG
1 TAGTATTCGCCTAGCGGACAGTATTGCCTGGCGAATAGTATAGCTTGGCGGATAGAATGACCTAG
* *
33292981 CGAGTAGGATTACCTGGTGGATACGATTTACAACATCTTTAAGTTAATAATTATAAAAGT
66 CGAGTAGGATTACCTAGTGGATACGATTTACAACATCTTTAAGGTAATAATTATAAAAGT
*
33293041 TAGTATTCGCCTAGCGGACAGTATTGCCTGGCGAATTGTATAGCTTGGCGGATAGAATGACCTAG
1 TAGTATTCGCCTAGCGGACAGTATTGCCTGGCGAATAGTATAGCTTGGCGGATAGAATGACCTAG
* *
33293106 CGAGTAGGATTACCTAGTGGATATGATTTACAACATCTTTAAGGTAATAATTATAGAAGT
66 CGAGTAGGATTACCTAGTGGATACGATTTACAACATCTTTAAGGTAATAATTATAAAAGT
*
33293166 TAATATTC
1 TAGTATTC
33293174 TTTTGGAAAG
Statistics
Matches: 124, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
124 5 0.04
125 119 0.96
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (125 bp):
TAGTATTCGCCTAGCGGACAGTATTGCCTGGCGAATAGTATAGCTTGGCGGATAGAATGACCTAG
CGAGTAGGATTACCTAGTGGATACGATTTACAACATCTTTAAGGTAATAATTATAAAAGT
Found at i:33296733 original size:7 final size:7
Alignment explanation
Indices: 33296723--33296748 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
33296713 ATATTAAAGT
33296723 AAAAATA
1 AAAAATA
33296730 AAAAATA
1 AAAAATA
33296737 AAAAATA
1 AAAAATA
33296744 AAAAA
1 AAAAA
33296749 AAGATTCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:33304615 original size:14 final size:14
Alignment explanation
Indices: 33304596--33304641 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
33304586 ATAAAAATAC
33304596 AAATAAATATATAA
1 AAATAAATATATAA
**
33304610 AAATAAATAT-TTT
1 AAATAAATATATAA
*
33304623 AAA-AAACATATAA
1 AAATAAATATATAA
33304636 AAATAA
1 AAATAA
33304642 TTTTATATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
12 5 0.20
13 8 0.32
14 12 0.48
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (14 bp):
AAATAAATATATAA
Found at i:33307127 original size:13 final size:13
Alignment explanation
Indices: 33307109--33307133 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33307099 GTACGTGCAA
33307109 AATGTGGAAAAAG
1 AATGTGGAAAAAG
33307122 AATGTGGAAAAA
1 AATGTGGAAAAA
33307134 CATCGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.16
Consensus pattern (13 bp):
AATGTGGAAAAAG
Found at i:33307897 original size:12 final size:12
Alignment explanation
Indices: 33307862--33307903 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
33307852 AGATACAAAG
*
33307862 TCAGATGCATAA
1 TCAGATGCATAT
* *
33307874 TAAGATTCATAT
1 TCAGATGCATAT
33307886 TCAGATGCATAT
1 TCAGATGCATAT
33307898 TCAGAT
1 TCAGAT
33307904 CCTACCTCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (12 bp):
TCAGATGCATAT
Found at i:33308076 original size:27 final size:27
Alignment explanation
Indices: 33308029--33308093 Score: 62
Period size: 27 Copynumber: 2.4 Consensus size: 27
33308019 GCTGCCATAT
* *
33308029 ATAATATGTGGTAAACTACCAGAACAG
1 ATAATATGTGGTAAACCACCAAAACAG
* *
33308056 ATAA-ATGTGGCTAAGCCACCAAAATAG
1 ATAATATGTGG-TAAACCACCAAAACAG
*
33308083 AT-ATACGTGGT
1 ATAATATGTGGT
33308094 TTTTACCACC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 8 0.26
27 23 0.74
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (27 bp):
ATAATATGTGGTAAACCACCAAAACAG
Found at i:33309816 original size:13 final size:11
Alignment explanation
Indices: 33309788--33309830 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
33309778 AGTTAAATAT
33309788 TATTTTATTAA
1 TATTTTATTAA
33309799 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
33309812 TA-TTTATTAT
1 TATTTTATTAA
33309822 TATTTTATT
1 TATTTTATT
33309831 TTGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:33312598 original size:10 final size:10
Alignment explanation
Indices: 33312583--33312623 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
33312573 AAAATCAAAG
33312583 AAATATATAA
1 AAATATATAA
33312593 AAATATATAA
1 AAATATATAA
*
33312603 TTAA-AT-TAA
1 -AAATATATAA
33312612 AAATATATAA
1 AAATATATAA
33312622 AA
1 AA
33312624 TAAAATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
8 2 0.08
9 5 0.19
10 17 0.65
11 2 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AAATATATAA
Found at i:33312629 original size:21 final size:18
Alignment explanation
Indices: 33312589--33312634 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
33312579 AAAGAAATAT
33312589 ATAAAAATATATAATTAAA
1 ATAAAAATATATAA-TAAA
*
33312608 TTAAAAATATATAAAATAAA
1 ATAAAAATATAT--AATAAA
33312628 ATAAAAA
1 ATAAAAA
33312635 GATTGTTGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 11 0.48
20 10 0.43
21 2 0.09
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
ATAAAAATATATAATAAA
Found at i:33312633 original size:19 final size:19
Alignment explanation
Indices: 33312589--33312634 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
33312579 AAAGAAATAT
*
33312589 ATAAAAATATATAATTAAA
1 ATAAAAATATATAAATAAA
*
33312608 TTAAAAATATATAAAATAAA
1 ATAAAAATATAT-AAATAAA
33312628 ATAAAAA
1 ATAAAAA
33312635 GATTGTTGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
ATAAAAATATATAAATAAA
Found at i:33313925 original size:50 final size:49
Alignment explanation
Indices: 33313864--33313960 Score: 176
Period size: 50 Copynumber: 2.0 Consensus size: 49
33313854 AGGGTATCCC
33313864 AATTGATTTCCTCCATGAAAACCCAAAGATTTATGAAAAAGGGAAATTAA
1 AATTGATTTCCTCCATGAAAACCCAAAGATTTATG-AAAAGGGAAATTAA
*
33313914 AATTGATTTCCTCCATGAAAACCCAAAGATTTATGAAAGGGGAAATT
1 AATTGATTTCCTCCATGAAAACCCAAAGATTTATGAAAAGGGAAATT
33313961 GAAGTCTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 11 0.24
50 35 0.76
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.27
Consensus pattern (49 bp):
AATTGATTTCCTCCATGAAAACCCAAAGATTTATGAAAAGGGAAATTAA
Found at i:33314608 original size:10 final size:10
Alignment explanation
Indices: 33314579--33314680 Score: 51
Period size: 10 Copynumber: 10.9 Consensus size: 10
33314569 ATTTTATTAT
33314579 TATATTTTTA
1 TATATTTTTA
*
33314589 TACATTTTTA
1 TATATTTTTA
*
33314599 TATATGTTTA
1 TATATTTTTA
33314609 -A-A-TTTTA
1 TATATTTTTA
*
33314616 TATATTATTA
1 TATATTTTTA
* * * *
33314626 TTTCTTGTCA
1 TATATTTTTA
*
33314636 -A-AATTTT-
1 TATATTTTTA
33314643 T-TATTTTTA
1 TATATTTTTA
33314652 TATATTTTTA
1 TATATTTTTA
33314662 -A-ATTTATTA
1 TATATTT-TTA
33314671 TTATATTTTT
1 -TATATTTTT
33314681 GACAAAATTT
Statistics
Matches: 66, Mismatches: 15, Indels: 21
0.65 0.15 0.21
Matches are distributed among these distances:
7 4 0.06
8 13 0.20
9 7 0.11
10 35 0.53
11 3 0.05
12 4 0.06
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (10 bp):
TATATTTTTA
Found at i:33314654 original size:53 final size:49
Alignment explanation
Indices: 33314592--33314690 Score: 144
Period size: 53 Copynumber: 1.9 Consensus size: 49
33314582 ATTTTTATAC
*
33314592 ATTTTTATATATGTTTAAATTTTATATATTATTATTTCTTGTCAAAATTTTTT
1 ATTTTTATATATGTTTAAA-TTTAT-TATTA-TATTT-TTGACAAAATTTTTT
*
33314645 ATTTTTATATATTTTTAAATTTATTATTATATTTTTGACAAAATTT
1 ATTTTTATATATGTTTAAATTTATTATTATATTTTTGACAAAATTT
33314691 ATATATATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
49 11 0.25
50 5 0.11
51 5 0.11
52 5 0.11
53 18 0.41
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (49 bp):
ATTTTTATATATGTTTAAATTTATTATTATATTTTTGACAAAATTTTTT
Found at i:33314972 original size:31 final size:30
Alignment explanation
Indices: 33314909--33314996 Score: 94
Period size: 31 Copynumber: 3.0 Consensus size: 30
33314899 ACCAATTTAG
33314909 AAAAA-AAAC-AA-CCATAGTTTGGTGA-CA
1 AAAAAGAAACAAACCCATAG-TTGGTGACCA
** *
33314936 AAAAAGAAACAATTCTATAGTTGAGTGACCA
1 AAAAAGAAACAAACCCATAGTTG-GTGACCA
33314967 AAAAAGAAACAAACCCATAGTTGGGTGACC
1 AAAAAGAAACAAACCCATAGTT-GGTGACC
33314997 TGTGGTGTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.10
28 4 0.08
29 4 0.08
30 9 0.18
31 27 0.54
32 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (30 bp):
AAAAAGAAACAAACCCATAGTTGGTGACCA
Found at i:33316380 original size:118 final size:118
Alignment explanation
Indices: 33316230--33316452 Score: 322
Period size: 118 Copynumber: 1.9 Consensus size: 118
33316220 TAAATAAGCT
* * *
33316230 AACTCAAATAAATTTAGGTTACAATCGTAAATCAACTAACCTTAATAAAATTAGA-TGCGATCTT
1 AACTCAAATAAACTTAAGTTACAATCGTAAATCAACTAACCTTAATAAAATCA-ATTGCGATCTT
* *
33316294 AAATCAACAAGTTGTTAGGAGTTGCGATCTTAAATCAGTGATCTTAAATCAATA
65 AAATCAACAAGCTGTTAGGAGTTGCGATCTTAAATAAGTGATCTTAAATCAATA
* * * * * *
33316348 AACTCAAATTAACTTAAGTTGCGATCGTAAATCACCTAGCCTTAATAATATCAATTGCGATCTTA
1 AACTCAAATAAACTTAAGTTACAATCGTAAATCAACTAACCTTAATAAAATCAATTGCGATCTTA
*
33316413 AATCAACACGCTGTTAGGAGTTGCGATCTTAAATAAGTGA
66 AATCAACAAGCTGTTAGGAGTTGCGATCTTAAATAAGTGA
33316453 ACTCAAATAA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
117 1 0.01
118 91 0.99
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (118 bp):
AACTCAAATAAACTTAAGTTACAATCGTAAATCAACTAACCTTAATAAAATCAATTGCGATCTTA
AATCAACAAGCTGTTAGGAGTTGCGATCTTAAATAAGTGATCTTAAATCAATA
Found at i:33316567 original size:105 final size:105
Alignment explanation
Indices: 33316422--33316695 Score: 394
Period size: 105 Copynumber: 2.6 Consensus size: 105
33316412 AAATCAACAC
* * * * *
33316422 GCTGT-TAGGAGTTGCGATCTTAAATAAG-TGAACTCAAATAAACTTAGATTGTGATCTTAAATC
1 GCTGTGTAGGAGTTGCAATCTTAAATAAGCT-AACTCGAATAAATTTAGGTTGCGATCTTAAATC
* * *
33316485 TAA-TAACCTTAATAAAATTAGCTTTGAACGTAGGTCAGTGA
65 -AACAAACCTTAATAAAATTAACTGTGAACGTAGGTCAGTGA
33316526 GCTGTGTAGGAGTTGCAATCTTAAATAAGCTAACTCGAATAAATTTAGGTTGCGATCTTAAATCA
1 GCTGTGTAGGAGTTGCAATCTTAAATAAGCTAACTCGAATAAATTTAGGTTGCGATCTTAAATCA
*
33316591 ACAAATCTTAATAAAATTAACTGTGAACGTAGGTCAGTGA
66 ACAAACCTTAATAAAATTAACTGTGAACGTAGGTCAGTGA
* *
33316631 GCTATGTAGGAGTTGCAATCTTAAATCAA-CTAACTTGAATAAATTTAGGTTGCGATCTTAAATC
1 GCTGTGTAGGAGTTGCAATCTTAAAT-AAGCTAACTCGAATAAATTTAGGTTGCGATCTTAAATC
33316695 A
65 A
33316696 GCGGTGAACG
Statistics
Matches: 155, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
104 7 0.05
105 145 0.94
106 3 0.02
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (105 bp):
GCTGTGTAGGAGTTGCAATCTTAAATAAGCTAACTCGAATAAATTTAGGTTGCGATCTTAAATCA
ACAAACCTTAATAAAATTAACTGTGAACGTAGGTCAGTGA
Found at i:33318276 original size:56 final size:50
Alignment explanation
Indices: 33318161--33318312 Score: 178
Period size: 50 Copynumber: 2.9 Consensus size: 50
33318151 ACATCTCATA
* * **
33318161 TCGGTGCCCATGCGATGTCCCAGACATGGTCTTACGGGGGACCTCTCGTC
1 TCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTC
33318211 TCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATC
1 TCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TC
* * * *
33318264 TCAAGGATGCCAATGCCTTGTCCCAGCCATGGTTTTACATGGGATCTCT
1 TC--GG-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
33318313 TTACCCAAAT
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
50 43 0.49
52 1 0.01
53 4 0.05
55 2 0.02
56 38 0.43
ACGTcount: A:0.18, C:0.30, G:0.25, T:0.27
Consensus pattern (50 bp):
TCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTC
Found at i:33319695 original size:105 final size:105
Alignment explanation
Indices: 33319512--33319753 Score: 322
Period size: 105 Copynumber: 2.3 Consensus size: 105
33319502 CCATTACATG
* *
33319512 CGATCTTAAATCAACTAACCTTAATAAAATCACCTGTGAACATAGGTCAGCGAGCTGTGTAGGAG
1 CGATCTTAAATCAGCTAACCTTAATAAAATCACCTGTGAACATAGGTCAGCGAGCTGTGTAAGAG
* * * *
33319577 TTGCAATATTAAATTAGTTAACTCGAATAAATTTAGCTTG
66 TTGCAATATTAAATAAGCTAACTCGAATAAACTTAGCTTA
* * * * *
33319617 TGATCTTAAATCAGTTAACCTTAATAAAATCACCTGTGAACGTAGGTTAGCGAGTTGTGTAAGAG
1 CGATCTTAAATCAGCTAACCTTAATAAAATCACCTGTGAACATAGGTCAGCGAGCTGTGTAAGAG
* * * *
33319682 TTGCTATCTTAAATAAGCTAACTCGATTAAACTTAGGTTA
66 TTGCAATATTAAATAAGCTAACTCGAATAAACTTAGCTTA
* * *
33319722 CAATATTAAATCAGCTAACCTTAATAATATCA
1 CGATCTTAAATCAGCTAACCTTAATAAAATCA
33319754 GTTGCAATCT
Statistics
Matches: 117, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
105 117 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (105 bp):
CGATCTTAAATCAGCTAACCTTAATAAAATCACCTGTGAACATAGGTCAGCGAGCTGTGTAAGAG
TTGCAATATTAAATAAGCTAACTCGAATAAACTTAGCTTA
Done.