Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 113 of 187
Found at i:33325222 original size:289 final size:290
Alignment explanation
Indices: 33324703--33325280 Score: 1059
Period size: 289 Copynumber: 2.0 Consensus size: 290
33324693 CATGGATGCA
33324703 TCATTCTTGGTTGATGTTTGATGTGGTGGTGATGAGGCAAGAGGATGAGTTAAAATTCGGCCTAG
1 TCATTCTTGGTTGATGTTTGATGTGGTGGTGATGAGGCAAGAGGATGAGTTAAAATTCGGCCTAG
*
33324768 GTGGAGGTTGTGTTAATGCCATTGCATGCTAAATATGAAGTTTGTTAATGATGCATGTGATGATG
66 GTGGAGGTTGTGTTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGATG
*
33324833 ACTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGTGTGAGCACATATGTGCATTGGTTGCTA
131 ACTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTGCTA
*
33324898 AATGGAGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATGTAAC-TTTGCATGTTAATGAG
196 AATGGAGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGTTAATGAG
33324962 CAATGCATGTGTTAAATTGATGGAAAGGGG
261 CAATGCATGTGTTAAATTGATGGAAAGGGG
* * *
33324992 TCATTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAGGATGAGTTAAGATTCGGCCTAG
1 TCATTCTTGGTTGATGTTTGATGTGGTGGTGATGAGGCAAGAGGATGAGTTAAAATTCGGCCTAG
* *
33325057 GTGGAGTTTGTGTTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTG
66 GTGGAGGTTGTGTTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGATG
*
33325122 GCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTGCTA
131 ACTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTGCTA
*
33325187 AATGGAGAAGAATCGGTTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGTTAATGAG
196 AATGGAGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGTTAATGAG
33325252 CAATGCATGTGTTAAATTGATGGAAAGGG
261 CAATGCATGTGTTAAATTGATGGAAAGGG
33325281 AGAGGATGCT
Statistics
Matches: 278, Mismatches: 10, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
289 233 0.84
290 45 0.16
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.35
Consensus pattern (290 bp):
TCATTCTTGGTTGATGTTTGATGTGGTGGTGATGAGGCAAGAGGATGAGTTAAAATTCGGCCTAG
GTGGAGGTTGTGTTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGATG
ACTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTGCATTGGTTGCTA
AATGGAGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGCATGTTAATGAG
CAATGCATGTGTTAAATTGATGGAAAGGGG
Found at i:33325640 original size:55 final size:55
Alignment explanation
Indices: 33325556--33325667 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
33325546 TGATTAAATC
33325556 AATTTATTTGTTTAATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGG
1 AATTTATTTGTTTAATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGG
33325611 AATTTATTTGTTTAATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGG
1 AATTTATTTGTTTAATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGG
33325666 AA
1 AA
33325668 GGAAAAAGTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (55 bp):
AATTTATTTGTTTAATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGG
Found at i:33326048 original size:79 final size:81
Alignment explanation
Indices: 33325913--33326096 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 81
33325903 TTGAATGATG
33325913 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGATTAAGATCCGAAGGCATT
33325976 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * *
33325991 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGATTAAGAT-CCGAAGGC
33326052 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
33326071 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33326097 AACGAGGAGC
Statistics
Matches: 93, Mismatches: 5, Indels: 13
0.84 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 59 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGATTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:33326058 original size:40 final size:40
Alignment explanation
Indices: 33325913--33326096 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
33325903 TTGAATGATG
* *
33325913 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
33325952 TCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
33325992 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33326031 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33326072 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33326097 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 52 0.42
40 62 0.50
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33326118 original size:79 final size:77
Alignment explanation
Indices: 33325942--33326129 Score: 202
Period size: 79 Copynumber: 2.4 Consensus size: 77
33325932 GCTTGTGCTA
* *
33325942 AGTGACAATATCCGGATTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCG
1 AGTGACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCG
**
33326007 AAGGCATTTGTGCG
64 AAGGCATTTGAACG
* * *
33326021 AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 AGTGACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-C
33326084 CCGAAGGCATTTGAACG
61 CCGAAGGCATTTGAACG
*
33326101 AG-GAGCTATATCCGGTTAAATTCCGAAGG
1 AGTGA-CTATATCCGGTT-AAGTCCGAAGG
33326130 TACGTGATTT
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
78 4 0.04
79 58 0.63
80 30 0.33
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (77 bp):
AGTGACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAA
GGCATTTGAACG
Found at i:33337781 original size:12 final size:12
Alignment explanation
Indices: 33337764--33337791 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
33337754 TGCTGTCATC
33337764 ACTACACCAAAA
1 ACTACACCAAAA
33337776 ACTACACCAAAA
1 ACTACACCAAAA
33337788 ACTA
1 ACTA
33337792 AAGTTGGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.32, G:0.00, T:0.11
Consensus pattern (12 bp):
ACTACACCAAAA
Found at i:33342025 original size:51 final size:51
Alignment explanation
Indices: 33341941--33342126 Score: 199
Period size: 51 Copynumber: 3.8 Consensus size: 51
33341931 GAAGATAGCG
* *
33341941 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTTACA
* *
33341992 AACCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAG---C----TACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTTACA
* * * *
33342036 AATCTTATTTCCCTGAAGTTGTAGTGGAATC-GATTAAAGCTATAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGG-AGCAGATTAAAGCTACAAGTTACA
* * * *
33342087 AATATCATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
33342127 GCCAAATCTT
Statistics
Matches: 109, Mismatches: 17, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
44 35 0.32
45 2 0.02
48 1 0.01
50 2 0.02
51 69 0.63
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (51 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTTACA
Found at i:33342051 original size:44 final size:44
Alignment explanation
Indices: 33341988--33342155 Score: 149
Period size: 44 Copynumber: 3.7 Consensus size: 44
33341978 AGCTACAAGT
* *
33341988 TACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
* * *
33342032 TACAAATCTTATTTCCCTGAAGTTGTAGTGGAATC-GATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGG-AGCAGATTAAAGC
* * * *
33342076 TATAAGTTACAAATATCATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGC
1 -------TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
** *
33342127 GCCAAATCTTATATCCCTGAAGTTGCAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGT
33342156 AGGTTAGAAT
Statistics
Matches: 97, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
44 59 0.61
45 2 0.02
50 2 0.02
51 34 0.35
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
Found at i:33342056 original size:95 final size:95
Alignment explanation
Indices: 33341896--33342155 Score: 360
Period size: 95 Copynumber: 2.7 Consensus size: 95
33341886 TTAAAGCTAC
* * * *
33341896 AACCTCATCTCCCTGAAGTTACAGTGGAGCAAATTGAAGATAGCGAATCTTATTTCCCTGAAGTT
1 AACCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATCTTATTTCCCTGAAGTT
33341961 GCAGTGGAA-CAGATTAAAGCTACAAGTTACA
65 GCAGTGGAATC-GATTAAAGCTACAAGTTACA
* * *
33341992 AACCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCTACAAATCTTATTTCCCTGAAGTTG
1 AACCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATTTCCCTGAAGTTG
* *
33342057 TAGTGGAATCGATTAAAGCTATAAGTTACA
66 CAGTGGAATCGATTAAAGCTACAAGTTACA
** * ** *
33342087 AATATCATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCGCCAAATCTTATATCCCTGAAGTTG
1 AACCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATTTCCCTGAAGTTG
33342152 CAGT
66 CAGT
33342156 AGGTTAGAAT
Statistics
Matches: 144, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
95 107 0.74
96 37 0.26
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (95 bp):
AACCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATTTCCCTGAAGTTG
CAGTGGAATCGATTAAAGCTACAAGTTACA
Found at i:33342317 original size:14 final size:14
Alignment explanation
Indices: 33342298--33342341 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
33342288 TCCAGCCCAA
33342298 AACCAAAAATAAAT
1 AACCAAAAATAAAT
* *
33342312 AACCAAATATAAAA
1 AACCAAAAATAAAT
*
33342326 AAACAAAAATAAAT
1 AACCAAAAATAAAT
33342340 AA
1 AA
33342342 TAATAGTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.75, C:0.11, G:0.00, T:0.14
Consensus pattern (14 bp):
AACCAAAAATAAAT
Found at i:33342849 original size:1 final size:1
Alignment explanation
Indices: 33342798--33342838 Score: 82
Period size: 1 Copynumber: 41.0 Consensus size: 1
33342788 TTGAAGGTGA
33342798 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33342839 AGTTATTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:33343546 original size:20 final size:20
Alignment explanation
Indices: 33343523--33343561 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33343513 TCCAACTTAA
*
33343523 TTCAGCTCATTTGAGCTCAT
1 TTCAACTCATTTGAGCTCAT
*
33343543 TTCAACTCGTTTGAGCTCA
1 TTCAACTCATTTGAGCTCA
33343562 ACCGAGCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (20 bp):
TTCAACTCATTTGAGCTCAT
Found at i:33347038 original size:67 final size:68
Alignment explanation
Indices: 33346932--33347061 Score: 208
Period size: 67 Copynumber: 1.9 Consensus size: 68
33346922 CAATTATACG
* *
33346932 AACTTACCTCGTGTACGGAAAAAACGGAACGGGCCAACTATTTAATTACTTTGCTCTTTCCCTAT
1 AACTTACCTCGTGTACGGAAAAAACGGAACGGGCCAACTATTCAATTACTTTACTCTTTCCCTAT
33346997 AGA
66 AGA
** *
33347000 AACTTACCTCGTGTAC-GAAATGACGGAACGGGCCAACTATTCAATTACTTTACTTTTTCCCT
1 AACTTACCTCGTGTACGGAAAAAACGGAACGGGCCAACTATTCAATTACTTTACTCTTTCCCT
33347062 GATCTAAGTC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
67 41 0.72
68 16 0.28
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (68 bp):
AACTTACCTCGTGTACGGAAAAAACGGAACGGGCCAACTATTCAATTACTTTACTCTTTCCCTAT
AGA
Found at i:33347708 original size:4 final size:4
Alignment explanation
Indices: 33347699--33347751 Score: 65
Period size: 4 Copynumber: 13.8 Consensus size: 4
33347689 TTACAAATTA
* * *
33347699 TTAT TTAT TTA- TTAT TTAT TTAT TCAT TTAT TTAT TTA- TTAC TTCT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
33347745 TTAT TTA
1 TTAT TTA
33347752 CTTTTTTACA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
3 6 0.14
4 36 0.86
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.70
Consensus pattern (4 bp):
TTAT
Found at i:33347712 original size:11 final size:11
Alignment explanation
Indices: 33347696--33347734 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
33347686 TTTTTACAAA
33347696 TTATTATTTAT
1 TTATTATTTAT
33347707 TTATTATTTAT
1 TTATTATTTAT
33347718 TTATTCATTTAT
1 TTATT-ATTTAT
33347730 TTATT
1 TTATT
33347735 TATTACTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTAT
Found at i:33347811 original size:18 final size:19
Alignment explanation
Indices: 33347788--33347827 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
33347778 TATACATGTT
*
33347788 TTTATTAGTG-CATTTTTA
1 TTTATTAGTGTCATTATTA
*
33347806 TTTATTATTGTCATTATTA
1 TTTATTAGTGTCATTATTA
33347825 TTT
1 TTT
33347828 TATTTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (19 bp):
TTTATTAGTGTCATTATTA
Found at i:33348977 original size:16 final size:16
Alignment explanation
Indices: 33348956--33348988 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33348946 TTATGAGCAA
33348956 TTAAGACATCGTGATG
1 TTAAGACATCGTGATG
33348972 TTAAGACATCGTGATG
1 TTAAGACATCGTGATG
33348988 T
1 T
33348989 ACTATGCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33
Consensus pattern (16 bp):
TTAAGACATCGTGATG
Found at i:33357200 original size:6 final size:6
Alignment explanation
Indices: 33357189--33357240 Score: 86
Period size: 6 Copynumber: 8.5 Consensus size: 6
33357179 TGAAAAATAA
*
33357189 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT AATGTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TAT-TTT
33357238 TAT
1 TAT
33357241 ATAAAAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
6 38 0.88
7 5 0.12
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:33362991 original size:18 final size:17
Alignment explanation
Indices: 33362965--33362999 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33362955 AATATTAAGA
*
33362965 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
33362982 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
33363000 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:33363011 original size:120 final size:120
Alignment explanation
Indices: 33362858--33363261 Score: 668
Period size: 120 Copynumber: 3.4 Consensus size: 120
33362848 TAATTGAAAA
* * * *
33362858 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATCATATA
* * *
33362922 TTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAGTAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* *
33362977 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATCATATA
33363042 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
33363097 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATCATATA
33363162 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
33363217 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
33363262 ATGATTAAAT
Statistics
Matches: 270, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
119 14 0.05
120 251 0.93
121 5 0.02
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATCATATA
TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:33363077 original size:66 final size:66
Alignment explanation
Indices: 33363002--33363199 Score: 208
Period size: 66 Copynumber: 3.2 Consensus size: 66
33362992 AAATATATTT
33363002 AATAGTAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
1 AATAGTAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
33363067 G
66 G
* * * * *
33363068 AATATTAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAAAT-ATAT
1 AATAGTAATTATGT--TAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATAT
**
33363120 -TT
64 AAG
33363122 AATAGTAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
1 AATAGTAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
33363187 G
66 G
*
33363188 AATATTAATTAT
1 AATAGTAATTAT
33363200 TAAGAATTTT
Statistics
Matches: 101, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
53 5 0.05
54 13 0.13
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 24 0.24
67 5 0.05
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (66 bp):
AATAGTAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
G
Found at i:33363113 original size:18 final size:17
Alignment explanation
Indices: 33363085--33363119 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33363075 ATTATTAAGA
*
33363085 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
33363102 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
33363120 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:33363209 original size:61 final size:61
Alignment explanation
Indices: 33363024--33363210 Score: 195
Period size: 61 Copynumber: 3.1 Consensus size: 61
33363014 GTTAATTTAT
33363024 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGA
1 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGA
* * * * * ** * * ** * *
33363085 ATTTTATTA-AATTATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAA-T-TT-A-T
1 ATTTTA-CAGTATCATATATTATGATTTCAGTA-AATTAATA-TAAGAATATTAATTATTAAGA
33363144 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGA
1 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGA
33363205 ATTTTA
1 ATTTTA
33363211 TTAAATTATA
Statistics
Matches: 92, Mismatches: 26, Indels: 16
0.69 0.19 0.12
Matches are distributed among these distances:
57 9 0.10
58 9 0.10
59 24 0.26
60 2 0.02
61 30 0.33
62 9 0.10
63 9 0.10
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.47
Consensus pattern (61 bp):
ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGA
Found at i:33363233 original size:18 final size:17
Alignment explanation
Indices: 33363205--33363239 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33363195 ATTATTAAGA
*
33363205 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
33363222 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
33363240 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:33363239 original size:16 final size:16
Alignment explanation
Indices: 33363205--33363259 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
33363195 ATTATTAAGA
33363205 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
33363222 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
33363238 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
33363252 ATGTTTAA
1 AT-TTTAA
33363260 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:33363496 original size:16 final size:16
Alignment explanation
Indices: 33363475--33363542 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
33363465 GATTTGCTAT
33363475 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
33363491 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
33363507 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
33363523 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
33363539 TACA
1 TACA
33363543 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:33372270 original size:3 final size:3
Alignment explanation
Indices: 33372262--33372358 Score: 92
Period size: 3 Copynumber: 32.0 Consensus size: 3
33372252 CATATATGAA
* * *
33372262 AAT AAT AAT AAT AAT -AT GAC AGT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
33372309 AAT AATT AAT TA- AAT AGACT AAT GAAT -AG AAT AAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT AAT A-A-T AAT -AAT AAT AAT AAT AAT AAT AAT AAT
33372356 AAT
1 AAT
33372359 GAGAAAGACA
Statistics
Matches: 78, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
2 4 0.05
3 64 0.82
4 8 0.10
5 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:33375015 original size:36 final size:35
Alignment explanation
Indices: 33374948--33375026 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 35
33374938 TAAGTTTTTG
*
33374948 TATATTATTATTTTAAACTTTTACATGTATATATT
1 TATATTATTATTTTAAACTTTTACATATATATATT
* *
33374983 TATATTATCTATTTTAAATGTTTTTATATATATAATATT
1 TATATTAT-TATTTTAAA--CTTTTACATATAT-ATATT
33375022 TATAT
1 TATAT
33375027 GTAGACTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 8 0.22
36 9 0.24
38 10 0.27
39 10 0.27
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (35 bp):
TATATTATTATTTTAAACTTTTACATATATATATT
Found at i:33383160 original size:50 final size:50
Alignment explanation
Indices: 33383000--33383227 Score: 244
Period size: 49 Copynumber: 4.6 Consensus size: 50
33382990 TCAAACACAA
*
33383000 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGACG
1 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGACG
* ** * * * *
33383050 CATTATTTTTGAAGCCTATGTGGCTAAT-ATTTGAAAAGCCTCTATGACG
1 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGACG
* * * * **
33383099 CATTATCTGGGAAGCCTTTGTGGTTAATCTTTTGAAAAGACTCTGTGGTG
1 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGACG
* * * * * * *
33383149 CATTATTTGGGAAACATTTATAGATAATC-TTTGAAAAGCCTCTGTGGCG
1 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGACG
*
33383198 CATTATCTAGGAAACCTTTTTGGCTAATCT
1 CATTATCTAGGAAACCTTTGTGGCTAATCT
33383228 CTTAAAAACC
Statistics
Matches: 144, Mismatches: 32, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
49 82 0.57
50 62 0.43
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (50 bp):
CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAAGCCTCTGTGACG
Found at i:33383245 original size:99 final size:99
Alignment explanation
Indices: 33383000--33383245 Score: 294
Period size: 99 Copynumber: 2.5 Consensus size: 99
33382990 TCAAACACAA
* ** *
33383000 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGACGCATTATTTTTGAAGC
1 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGGCGCATTATTTGGGAAAC
* * * *
33383065 CTATGTGGCTAATATTTGAAAAGCCTCTATGACG
66 ATATATAGATAATATTTGAAAAGCCTCTATGACG
* * * ** *
33383099 CATTATCTGGGAAGCCTTTGTGGTTAATCTTTTGAAAAGACTCTGTGGTGCATTATTTGGGAAAC
1 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGGCGCATTATTTGGGAAAC
* * * *
33383164 ATTTATAGATAATCTTTGAAAAGCCTCTGTGGCG
66 ATATATAGATAATATTTGAAAAGCCTCTATGACG
* * * *
33383198 CATTATCTAGGAAACCTTTTTGGCTAATCTCTTAAAAACCCTTTGTGG
1 CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGG
33383246 ATAAGTACCA
Statistics
Matches: 120, Mismatches: 27, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
99 120 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (99 bp):
CATTATCTAGGAAACCTTTGTGGCTAATCTTTTGAAAACCCTCTGTGGCGCATTATTTGGGAAAC
ATATATAGATAATATTTGAAAAGCCTCTATGACG
Found at i:33387989 original size:22 final size:22
Alignment explanation
Indices: 33387938--33387998 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
33387928 ATAAGTAAAT
* *
33387938 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
33387959 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
33387981 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
33387999 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:33388213 original size:16 final size:16
Alignment explanation
Indices: 33388194--33388225 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33388184 TTATAATAAT
33388194 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
33388210 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
33388226 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:33389134 original size:27 final size:27
Alignment explanation
Indices: 33389063--33389147 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 27
33389053 CTGAATTTTA
*
33389063 TTCTTGAATCTCAAAAAAAGAAAAATCCC
1 TTCTTGAATCTC-AAAAAA-AAAAATCTC
*
33389092 CTCTTGAATCTC--AAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAAATCTC
33389117 TTCTTGAATCTCAAAAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAAATCTC
33389144 TTCT
1 TTCT
33389148 CTCCAAAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
25 19 0.37
26 4 0.08
27 17 0.33
29 11 0.22
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (27 bp):
TTCTTGAATCTCAAAAAAAAAAATCTC
Found at i:33389382 original size:6 final size:6
Alignment explanation
Indices: 33389375--33389407 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
33389365 TTAGGGTTTC
*
33389375 TTTTTC TTTTT- TTTTTG TTTTTG TTTTTG TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT
33389408 GGGTATTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (6 bp):
TTTTTG
Found at i:33389396 original size:12 final size:12
Alignment explanation
Indices: 33389375--33389407 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
33389365 TTAGGGTTTC
*
33389375 TTTTTCTTTTT-
1 TTTTTGTTTTTG
33389386 TTTTTGTTTTTG
1 TTTTTGTTTTTG
33389398 TTTTTGTTTT
1 TTTTTGTTTT
33389408 GGGTATTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (12 bp):
TTTTTGTTTTTG
Found at i:33389401 original size:17 final size:17
Alignment explanation
Indices: 33389375--33389408 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33389365 TTAGGGTTTC
*
33389375 TTTTTCTTTTTTTTTTG
1 TTTTTCTTTTTGTTTTG
*
33389392 TTTTTGTTTTTGTTTTG
1 TTTTTCTTTTTGTTTTG
33389409 GGTATTGGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (17 bp):
TTTTTCTTTTTGTTTTG
Found at i:33389663 original size:44 final size:44
Alignment explanation
Indices: 33389599--33389842 Score: 241
Period size: 44 Copynumber: 5.6 Consensus size: 44
33389589 TGAGTTCTTG
* * *
33389599 ATCTGCT-TCTTCGA-TCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCCAA
* * *
33389642 ATCTGTTGTCTTCAACTTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAA
*
33389686 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
33389728 ATGCTGAAATCTTCGA-TCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAACT-TG-TTC-CCTATAAGCACAGGGATGCCAA
33389774 ATCTGCTATCTTCAA-TCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCCAA
* *
33389818 ATCTGCTGTTTTCAACTTGTTCCCT
1 ATCTGCTATCTTCAACTTGTTCCCT
33389843 GACAATACGG
Statistics
Matches: 168, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
42 3 0.02
43 20 0.12
44 125 0.74
45 18 0.11
46 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:33390349 original size:206 final size:203
Alignment explanation
Indices: 33389982--33391304 Score: 1886
Period size: 205 Copynumber: 6.5 Consensus size: 203
33389972 GGGAACATCC
* * * * *
33389982 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTAG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* **
33390047 ATCTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATTGAAGTGGG
66 ATC-TGCTTCAGTA-AAACATCTGAAGG-CAGATCTGCTATGTATCTGCTCTCCATTGAAGTGAA
* *
33390112 GATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCAT
128 GATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCAT
**
33390177 TGTAATCACGT
193 CATAATCACGT
* * * *
33390188 GCAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* *
33390253 ATTTTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTGGA
66 A-TCTGCTTCAGTA-AAACATCTGAAGG-CAGATCTGCTATGTATCTGCTCTCCATTGAAGTGAA
* * * * *
33390318 GATGCCAGACTTCGATTTGTTCTCTGACAATATAGAGACCACAAATCATATTAGATTTACTTCAT
128 GATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCAT
*
33390383 CGTAATCACGT
193 CATAATCACGT
** * *
33390394 GAAAGCCAAATCAGCTATGTCTTCGATTCATTCCTTGTAAAAACAAGGATGGCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * * * *
33390459 ATCTGCTTCAGTGAAATCATCT-AA---AG-GC-GCTATGTGTCTGCTCTCTATT-AGAGTGAAT
66 ATCTGCTTCAGT-AAAACATCTGAAGGCAGATCTGCTATGTATCTGCTCTCCATTGA-AGTGAAG
* * *
33390517 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATATTAGATTTGCTTCATC
129 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCATC
*
33390582 GTAATCACGT
194 ATAATCACGT
*
33390592 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * **
33390657 ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
66 ATCTGCTTCAGT-AAAACATCTGAAGGC-AGATCTGCTATGTATCTGCTCTCCATTGAAGTGAAG
33390722 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCATC
129 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCATC
33390787 ATAATCACGT
194 ATAATCACGT
*
33390797 GAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * * * * *
33390862 ATCTGCTTCAGTGAAACATCTAAAGGTCAGATCTGCTATGTATCTGCTTTCTACTGAAGTGGAGA
66 ATCTGCTTCAGTAAAACATCTGAAGG-CAGATCTGCTATGTATCTGCTCTCCATTGAAGTGAAGA
* * *
33390927 TGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCA
130 TGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCATCA
*
33390992 TACTCACGT
195 TAATCACGT
* *
33391001 GAAAGCCAAATCAGCTGTTTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * * **
33391066 ATCTGCTTCAGTGAAATCATCTAAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
66 ATCTGCTTCAGT-AAAACATCTGAAGGC-AGATCTGCTATGTATCTGCTCTCCATTGAAGTGAAG
* *
33391131 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGATAAATCATCTTAGATTTGCTTCATC
129 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCATC
33391196 ATAATCACGT
194 ATAATCACGT
*
33391206 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* *
33391271 ATCTGCTTCAGTATAACATCTGTAGGCCAGATCT
66 ATCTGCTTCAGTAAAACATCTGAAGG-CAGATCT
33391305 ATTATGCTGC
Statistics
Matches: 1017, Mismatches: 85, Indels: 32
0.90 0.07 0.03
Matches are distributed among these distances:
197 1 0.00
198 175 0.17
199 3 0.00
200 2 0.00
203 2 0.00
204 205 0.20
205 376 0.37
206 252 0.25
207 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (203 bp):
GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
ATCTGCTTCAGTAAAACATCTGAAGGCAGATCTGCTATGTATCTGCTCTCCATTGAAGTGAAGAT
GCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCATCAT
AATCACGT
Found at i:33391304 original size:409 final size:408
Alignment explanation
Indices: 33389982--33391304 Score: 2000
Period size: 409 Copynumber: 3.2 Consensus size: 408
33389972 GGGAACATCC
* * * * *
33389982 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTAG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * * *
33390047 ATCTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATTGAAGTGGG
66 ATC-TGCTTCAGT-GAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTA-TGAAGTGGA
*
33390112 GATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCAT
128 GATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
* * * *
33390177 TGTAATCACGTGCAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCA
193 CGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCA
* * * *
33390242 AATCATCTTGGATTTTGCTTCAGT-ATAAACATCTGAAGGTC-AGATCTGCTATGTATCTGCTCT
258 AACCATCTTGGA-TCTGCTTCAGTGA-AATCATCTGAAGG-CGAGATCTGCTATGTGTCTGCTCT
** * * * * *
33390305 CCATTGAAGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATATAGAGACCACAAATCATATT
320 CCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTT
* *
33390370 AGATTTACTTCATCGTAATCACGT
385 AGATTTGCTTCATCATAATCACGT
** * *
33390394 GAAAGCCAAATCAGCTATGTCTTCGATTCATTCCTTGTAAAAACAAGGATGGCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * * * *
33390459 ATCTGCTTCAGTGAAATCATCT-AA----AG-GC-GCTATGTGTCTGCTCTCTATTAGAGTGAAT
66 ATCTGCTTCAGTGAAA-CATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTATGA-AGTGGAG
* * * *
33390517 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATATTAGATTTGCTTCATC
129 ATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
*
33390582 GTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATACCAA
194 GTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAA
33390647 ACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
259 ACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCAT
33390712 CAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGAT
324 CAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGAT
33390777 TTGCTTCATCATAATCACGT
389 TTGCTTCATCATAATCACGT
*
33390797 GAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* *
33390862 ATCTGCTTCAGTGAAACATCTAAAGGTCAGATCTGCTATGTATCTGCTTTCTACTGAAGTGGAGA
66 ATCTGCTTCAGTGAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTA-TGAAGTGGAGA
*
33390927 TGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCA
130 TGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCG
* * *
33390992 TACTCACGTGAAAGCCAAATCAGCTGTTTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAA
195 TAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAA
*
33391057 CCATCTTGGATCTGCTTCAGTGAAATCATCTAAAGGCGAGATCTGCTATGTGTCTGCTCTCCATC
260 CCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATC
* *
33391122 AAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGATAAATCATCTTAGATT
325 AAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATT
33391187 TGCTTCATCATAATCACGT
390 TGCTTCATCATAATCACGT
*
33391206 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* *
33391271 ATCTGCTTCAGT-ATAACATCTGTAGGCCAGATCT
66 ATCTGCTTCAGTGA-AACATCTGAAGGTCAGATCT
33391305 ATTATGCTGC
Statistics
Matches: 830, Mismatches: 68, Indels: 29
0.90 0.07 0.03
Matches are distributed among these distances:
402 6 0.01
403 203 0.24
404 152 0.18
405 1 0.00
406 2 0.00
407 2 0.00
408 2 0.00
409 382 0.46
410 7 0.01
411 14 0.02
412 59 0.07
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (408 bp):
GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
ATCTGCTTCAGTGAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCTATGAAGTGGAGAT
GCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGT
AATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAAC
CATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCA
AAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTT
GCTTCATCATAATCACGT
Found at i:33399298 original size:14 final size:15
Alignment explanation
Indices: 33399269--33399298 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33399259 TTCCAGATTT
33399269 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
33399284 TCTTTTCTA-CTCTC
1 TCTTTTCTACCTCTC
33399298 T
1 T
33399299 GGAAAGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.07, C:0.37, G:0.00, T:0.57
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:33399384 original size:15 final size:14
Alignment explanation
Indices: 33399342--33399391 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
33399332 ATAATTTTGA
*
33399342 ATGCAAATGATGTG
1 ATGCAAATGATGAG
33399356 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
33399371 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
33399385 ATGCAAA
1 ATGCAAA
33399392 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:33402769 original size:3 final size:3
Alignment explanation
Indices: 33402761--33402871 Score: 59
Period size: 3 Copynumber: 36.7 Consensus size: 3
33402751 AAAGTAGTGC
* * *
33402761 TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA
* * * * *
33402806 TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA -AA TAA TAA GTAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA
* *
33402851 CAA TAA TAAA TTA TAA TAA TA
1 TAA TAA T-AA TAA TAA TAA TA
33402872 GTGATGAGAA
Statistics
Matches: 83, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
2 7 0.08
3 64 0.77
4 12 0.14
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:33402890 original size:16 final size:16
Alignment explanation
Indices: 33402871--33402902 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33402861 TTATAATAAT
33402871 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
33402887 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
33402903 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:33403035 original size:16 final size:15
Alignment explanation
Indices: 33403006--33403048 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
33402996 TATACGTATG
*
33403006 AAAAATAATGATAGT
1 AAAAATAATAATAGT
33403021 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
33403037 AATAATAATAAT
1 AAAAATAATAAT
33403049 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:33403257 original size:10 final size:10
Alignment explanation
Indices: 33403244--33403278 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
33403234 ATATATGTAC
*
33403244 ATAAAAATAT
1 ATAATAATAT
33403254 ATAATAATAT
1 ATAATAATAT
33403264 ATAATAATA-
1 ATAATAATAT
33403273 ATAATA
1 ATAATA
33403279 TTAAAATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
ATAATAATAT
Found at i:33403273 original size:26 final size:26
Alignment explanation
Indices: 33403211--33403286 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 26
33403201 AAAACAATAC
* *
33403211 TATATATAAAAGTATATACATACATATA
1 TATACATAAAAATATATA-ATA-ATATA
*
33403239 TGTACATAAAAATATATAATAATATA
1 TATACATAAAAATATATAATAATATA
*
33403265 TAATA-ATAATAATAT-TAA-AATA
1 T-ATACATAAAAATATATAATAATA
33403287 CAGAAAGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
24 4 0.10
25 3 0.07
26 15 0.36
27 5 0.12
28 15 0.36
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (26 bp):
TATACATAAAAATATATAATAATATA
Found at i:33403792 original size:26 final size:25
Alignment explanation
Indices: 33403733--33403816 Score: 105
Period size: 26 Copynumber: 3.2 Consensus size: 25
33403723 TGATTTTTTG
*
33403733 TTCTTGAATCTCAAAAAAAGAAAAATCCC
1 TTCTTGAATCTC---AAAA-AAAAATCTC
*
33403762 CTCTTGAATCTCAATAAAAAAATCTC
1 TTCTTGAATCTCAA-AAAAAAATCTC
33403788 TTCTTGAATCTCAAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAATCTC
33403813 TTCT
1 TTCT
33403817 CTCCAAAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
25 15 0.29
26 23 0.45
27 2 0.04
29 11 0.22
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (25 bp):
TTCTTGAATCTCAAAAAAAAATCTC
Found at i:33407090 original size:32 final size:32
Alignment explanation
Indices: 33407028--33407091 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
33407018 TAATATGATT
**
33407028 TTGGGTCTTGGCAGTGAATCGTGATGAACGGA
1 TTGGGTCTTGGCAGTGAATCGTGACAAACGGA
* *
33407060 TTGGGTTTTGGCGGTGAATCGTGACAAACGGA
1 TTGGGTCTTGGCAGTGAATCGTGACAAACGGA
33407092 GTTCTTCCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.22, C:0.12, G:0.38, T:0.28
Consensus pattern (32 bp):
TTGGGTCTTGGCAGTGAATCGTGACAAACGGA
Found at i:33407465 original size:17 final size:17
Alignment explanation
Indices: 33407445--33407502 Score: 61
Period size: 13 Copynumber: 3.6 Consensus size: 17
33407435 GTGGCCATGT
33407445 GGGCGTGTGGGCCACAC
1 GGGCGTGTGGGCCACAC
*
33407462 GGGCGTATGGGCCCACAC
1 GGGCGTGTGGG-CCACAC
*
33407480 GGGCATGT----CACAC
1 GGGCGTGTGGGCCACAC
33407493 GGGCGTGTGG
1 GGGCGTGTGG
33407503 ATTTTAGACC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 12 0.35
17 10 0.29
18 12 0.35
ACGTcount: A:0.14, C:0.28, G:0.45, T:0.14
Consensus pattern (17 bp):
GGGCGTGTGGGCCACAC
Found at i:33407479 original size:18 final size:17
Alignment explanation
Indices: 33407445--33407483 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
33407435 GTGGCCATGT
*
33407445 GGGCGTGTGGGCCACAC
1 GGGCGTATGGGCCACAC
33407462 GGGCGTATGGGCCCACAC
1 GGGCGTATGGG-CCACAC
33407480 GGGC
1 GGGC
33407484 ATGTCACACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.13, C:0.31, G:0.46, T:0.10
Consensus pattern (17 bp):
GGGCGTATGGGCCACAC
Found at i:33408067 original size:18 final size:18
Alignment explanation
Indices: 33408019--33408067 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
33408009 GGATTCTGCA
33408019 TATATGAATCTGAATTTG
1 TATATGAATCTGAATTTG
* * *
33408037 AATCTGAAACTGAATTTG
1 TATATGAATCTGAATTTG
*
33408055 TATATGTATCTGA
1 TATATGAATCTGA
33408068 TTGTGCATAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (18 bp):
TATATGAATCTGAATTTG
Found at i:33409124 original size:20 final size:20
Alignment explanation
Indices: 33409101--33409148 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
33409091 ATTGCTTCAA
33409101 GTATCGATACACGACTTGAT
1 GTATCGATACACGACTTGAT
* * * *
33409121 GTATCGATATATGATTTTAT
1 GTATCGATACACGACTTGAT
33409141 GTATCGAT
1 GTATCGAT
33409149 GCATTGGTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (20 bp):
GTATCGATACACGACTTGAT
Found at i:33409936 original size:25 final size:26
Alignment explanation
Indices: 33409908--33409964 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
33409898 AAGATCCATT
33409908 AATATATCATATAT-ATATAATTAC-A
1 AATA-ATCATATATAATATAATTACTA
* * *
33409933 AATAATTATATTTAATTTAATTACTA
1 AATAATCATATATAATATAATTACTA
33409959 AATAAT
1 AATAAT
33409965 TTTCTAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 7 0.26
25 13 0.48
26 7 0.26
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (26 bp):
AATAATCATATATAATATAATTACTA
Found at i:33410384 original size:3 final size:3
Alignment explanation
Indices: 33410376--33410524 Score: 298
Period size: 3 Copynumber: 49.7 Consensus size: 3
33410366 TTTTAACCCT
33410376 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33410424 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33410472 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33410520 TTA TT
1 TTA TT
33410525 GTCTCTGTTT
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 146 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33411042 original size:31 final size:31
Alignment explanation
Indices: 33410962--33411042 Score: 74
Period size: 31 Copynumber: 2.6 Consensus size: 31
33410952 TTTGATATAT
* * *
33410962 AAATTTTAAGTTT-ATGCAATTATATACATA
1 AAATTTTAATTTTGATTCAAATATATACATA
* * * * * *
33410992 AAAGTATGATTGTGTTTCAAATATATACATG
1 AAATTTTAATTTTGATTCAAATATATACATA
33411023 AAATTTTAATTTTGATTCAA
1 AAATTTTAATTTTGATTCAA
33411043 CCATACATAT
Statistics
Matches: 36, Mismatches: 14, Indels: 1
0.71 0.27 0.02
Matches are distributed among these distances:
30 8 0.22
31 28 0.78
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (31 bp):
AAATTTTAATTTTGATTCAAATATATACATA
Found at i:33415073 original size:23 final size:24
Alignment explanation
Indices: 33415046--33415093 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
33415036 ACTCGTTTAT
* *
33415046 ATGTTTGCAAACATTAAA-CAAAC
1 ATGTTTACAAACAGTAAATCAAAC
*
33415069 ATGTTTACAAATAGTAAATCAAAC
1 ATGTTTACAAACAGTAAATCAAAC
33415093 A
1 A
33415094 AACGAACAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (24 bp):
ATGTTTACAAACAGTAAATCAAAC
Found at i:33415426 original size:26 final size:26
Alignment explanation
Indices: 33415397--33415504 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
33415387 TGGTACAAAT
33415397 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
33415423 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
33415449 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
33415475 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
33415501 TGAT
1 TGAT
33415505 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:33419278 original size:56 final size:56
Alignment explanation
Indices: 33419192--33419300 Score: 175
Period size: 56 Copynumber: 1.9 Consensus size: 56
33419182 GTGGTATCGG
33419192 CATTAAGAGCCGAGAAGTGGATTCGAAAAGGTTGTGAGGCCTATTTGACATTTTGA
1 CATTAAGAGCCGAGAAGTGGATTCGAAAAGGTTGTGAGGCCTATTTGACATTTTGA
* * *
33419248 CATTAATAGTCGAGAAGTGGATTC-AGAAAGGTTGTGAGGCCTATTTGGCATTT
1 CATTAAGAGCCGAGAAGTGGATTCGA-AAAGGTTGTGAGGCCTATTTGACATTT
33419301 GTAAGTCAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 1 0.02
56 48 0.98
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.30
Consensus pattern (56 bp):
CATTAAGAGCCGAGAAGTGGATTCGAAAAGGTTGTGAGGCCTATTTGACATTTTGA
Found at i:33421082 original size:59 final size:59
Alignment explanation
Indices: 33420990--33421102 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 59
33420980 TCACGACTTA
*
33420990 CGAGAATTGTACTGGTGGCCTAGACTTAAACGAGAAGTAACAGAGTTTGTAGGGCCTTG
1 CGAGAATTGTACTGGTGGCCTAGACTTAAACGAGAAGTAACAGAGTTCGTAGGGCCTTG
* * *
33421049 CGAGAATTGTACTGGTGGCCTGGACTTACACGAGAAGTAACGGAGTTCGTAGGG
1 CGAGAATTGTACTGGTGGCCTAGACTTAAACGAGAAGTAACAGAGTTCGTAGGG
33421103 AAATGTCTGA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (59 bp):
CGAGAATTGTACTGGTGGCCTAGACTTAAACGAGAAGTAACAGAGTTCGTAGGGCCTTG
Found at i:33422657 original size:26 final size:26
Alignment explanation
Indices: 33422628--33422735 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
33422618 TGGTACAAAT
*
33422628 TGATAATGGGTTAGCTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
33422654 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
33422680 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
33422706 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
33422732 TGAT
1 TGAT
33422736 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:33430607 original size:58 final size:58
Alignment explanation
Indices: 33430517--33430632 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
33430507 GCTCGGTCTA
33430517 AAACAACGGTGTATGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCTATCTTAATG
1 AAACAACGGTGTATGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCTATCTTAATG
33430575 AAACAACGGTGTATGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCTATCTTAATG
1 AAACAACGGTGTATGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCTATCTTAATG
33430633 CTTGAGTGAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (58 bp):
AAACAACGGTGTATGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCTATCTTAATG
Found at i:33445396 original size:23 final size:23
Alignment explanation
Indices: 33445143--33445404 Score: 259
Period size: 23 Copynumber: 11.4 Consensus size: 23
33445133 ATAATCCACA
*
33445143 ACTTCAATTTACAGCA-TTCAAAC
1 ACTTCAATTTACAGCACTT-TAAC
*
33445166 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
*
33445189 ACTTCAATTTACAGCA-TTAAAAC
1 ACTTCAATTTACAGCACTT-TAAC
*
33445212 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
* * *
33445235 ATTTCAATTAACAACA-TTTAA-
1 ACTTCAATTTACAGCACTTTAAC
* *
33445256 ACATCTCAATTTCCAGCAAC-TAAAC
1 AC-T-TCAATTTACAGC-ACTTTAAC
* * *
33445281 ACTTCAATTTGCAGTACTTAAAC
1 ACTTCAATTTACAGCACTTTAAC
* *
33445304 ACTCCAATTTACAGCACTCTAAC
1 ACTTCAATTTACAGCACTTTAAC
*
33445327 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
*
33445350 AGTTCAATTTACAGCA-TTTAAAC
1 ACTTCAATTTACAGCACTTT-AAC
*
33445373 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCACTTTAAC
33445396 A-TCTCAATT
1 ACT-TCAATT
33445405 AACAACATTT
Statistics
Matches: 198, Mismatches: 29, Indels: 24
0.79 0.12 0.10
Matches are distributed among these distances:
21 1 0.01
22 14 0.07
23 169 0.85
24 12 0.06
25 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (23 bp):
ACTTCAATTTACAGCACTTTAAC
Found at i:33445424 original size:23 final size:22
Alignment explanation
Indices: 33445146--33445433 Score: 175
Period size: 23 Copynumber: 12.6 Consensus size: 22
33445136 ATCCACAACT
* *
33445146 TCAATTTACAGCATTCAAACACT
1 TCAATTTACAGCATT-TAACACC
* *
33445169 TCAATTTGCAGCACTTTAACACT
1 TCAATTTACAGCA-TTTAACACC
* *
33445192 TCAATTTACAGCATTAAAACACT
1 TCAATTTACAGCATT-TAACACC
* **
33445215 TCAATTTGCAGCACTTTAACATT
1 TCAATTTACAGCA-TTTAACACC
* * *
33445238 TCAATTAACAACATTTAAACATC
1 TCAATTTACAGCATTT-AACACC
* * * *
33445261 TCAATTTCCAGCAACTAAACACT
1 TCAATTTACAGC-ATTTAACACC
* * *
33445284 TCAATTTGCAGTACTTAA-ACAC
1 TCAATTTACAGCATTTAACAC-C
* *
33445306 TCCAATTTACAGCACTCTAACACT
1 T-CAATTTACAGCA-TTTAACACC
* **
33445330 TCAATTTGCAGCACTTTAACAGT
1 TCAATTTACAGCA-TTTAACACC
*
33445353 TCAATTTACAGCATTTAAACACT
1 TCAATTTACAGCATTT-AACACC
* *
33445376 TCAATTTGCAGCACTTTAACATC
1 TCAATTTACAGCA-TTTAACACC
* *
33445399 TCAATTAACAACATTTATACACC
1 TCAATTTACAGCATTTA-ACACC
*
33445422 TCAA-GTACAGCA
1 TCAATTTACAGCA
33445434 AAATGGAATA
Statistics
Matches: 211, Mismatches: 42, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.01
22 23 0.11
23 171 0.81
24 13 0.06
25 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (22 bp):
TCAATTTACAGCATTTAACACC
Found at i:33445791 original size:12 final size:12
Alignment explanation
Indices: 33445774--33445823 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
33445764 ACACACACAT
33445774 ATTAACATCTCA
1 ATTAACATCTCA
*
33445786 ATTAACA--ACA
1 ATTAACATCTCA
* *
33445796 TTTATACACCTCA
1 ATTA-ACATCTCA
33445809 ATTAACATCTCA
1 ATTAACATCTCA
33445821 ATT
1 ATT
33445824 TCCAGCAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 5 0.17
11 3 0.10
12 17 0.57
13 5 0.17
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (12 bp):
ATTAACATCTCA
Found at i:33447545 original size:15 final size:15
Alignment explanation
Indices: 33447525--33447555 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
33447515 CCTTGAATTA
33447525 GAAGAAAACCAGTAG
1 GAAGAAAACCAGTAG
33447540 GAAGAAAACCAGTAG
1 GAAGAAAACCAGTAG
33447555 G
1 G
33447556 TTACCTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.13, G:0.29, T:0.06
Consensus pattern (15 bp):
GAAGAAAACCAGTAG
Found at i:33448793 original size:7 final size:7
Alignment explanation
Indices: 33448781--33448916 Score: 64
Period size: 7 Copynumber: 19.1 Consensus size: 7
33448771 ACTAATTAAT
33448781 CTAAACC
1 CTAAACC
33448788 CTAAACC
1 CTAAACC
*
33448795 TCTTAACCC
1 -C-TAAACC
*
33448804 CT-ATCC
1 CTAAACC
*
33448810 CATAAACA
1 C-TAAACC
*
33448818 CTAAACT
1 CTAAACC
33448825 CTAAACC
1 CTAAACC
33448832 CTTAAA-C
1 C-TAAACC
*
33448839 CTTAACC
1 CTAAACC
*
33448846 CCAAACC
1 CTAAACC
*
33448853 CCAAACC
1 CTAAACC
* *
33448860 TTTACACC
1 -CTAAACC
* *
33448868 TTAAACT
1 CTAAACC
33448875 CT-AACC
1 CTAAACC
33448881 CT-AACC
1 CTAAACC
33448887 CATAAACC
1 C-TAAACC
*
33448895 CTAAATC
1 CTAAACC
* *
33448902 ATAATCC
1 CTAAACC
33448909 CTAAACC
1 CTAAACC
33448916 C
1 C
33448917 ATAATTCATC
Statistics
Matches: 98, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
6 17 0.17
7 58 0.59
8 18 0.18
9 5 0.05
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:33449012 original size:7 final size:7
Alignment explanation
Indices: 33448998--33449032 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
33448988 ATAGTTAACT
33448998 CATAAAC
1 CATAAAC
*
33449005 CTTAAAC
1 CATAAAC
*
33449012 CCTAAAC
1 CATAAAC
33449019 CATAAAC
1 CATAAAC
33449026 CATAAAC
1 CATAAAC
33449033 TGTAATGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.17
Consensus pattern (7 bp):
CATAAAC
Found at i:33449032 original size:46 final size:47
Alignment explanation
Indices: 33448926--33449033 Score: 157
Period size: 46 Copynumber: 2.3 Consensus size: 47
33448916 CATAATTCAT
*
33448926 CATAAACCTTCAAA-TACTAGTTAACTCCTAAACCTTAAACCCTAAAC
1 CATAAACCTT-AAACTACTAGTTAACTCATAAACCTTAAACCCTAAAC
* *
33448973 CATATATCTTAAACTA-TAGTTAACTCATAAACCTTAAACCCTAAAC
1 CATAAACCTTAAACTACTAGTTAACTCATAAACCTTAAACCCTAAAC
*
33449019 CATAAACCATAAACT
1 CATAAACCTTAAACT
33449034 GTAATGATAA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
46 44 0.81
47 10 0.19
ACGTcount: A:0.44, C:0.27, G:0.02, T:0.27
Consensus pattern (47 bp):
CATAAACCTTAAACTACTAGTTAACTCATAAACCTTAAACCCTAAAC
Found at i:33451748 original size:43 final size:43
Alignment explanation
Indices: 33451700--33451897 Score: 190
Period size: 43 Copynumber: 4.6 Consensus size: 43
33451690 TCCTAGATAT
*
33451700 GGTCTTACATGTTATCACATATCGATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCACACAG
** * * * *
33451743 GGTCTTACA-CAAAGTCGA-TTAACGATGTCGA-TGTCCCACACAT
1 GGTCTTACATGTAA-TC-ACATATCGATG-CCACTGTCCCACACAG
* * * **
33451786 GGTCTTACACGTAATCACA-ATACAATGCCATTGTCCCACTTAG
1 GGTCTTACATGTAATCACATAT-CGATGCCACTGTCCCACACAG
*
33451829 GGTCTTACATGTAATCACA-ATACAATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACATAT-CGATGCCACTGTCCCACACAG
*
33451872 GGTCTTACATGTAATCACATCTCGAT
1 GGTCTTACATGTAATCACATATCGAT
33451898 AACCTAATGT
Statistics
Matches: 125, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
42 5 0.04
43 114 0.91
44 6 0.05
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCACTGTCCCACACAG
Found at i:33458296 original size:43 final size:43
Alignment explanation
Indices: 33458249--33458446 Score: 181
Period size: 43 Copynumber: 4.6 Consensus size: 43
33458239 TCCTAGATAT
* * *
33458249 GGTCTTACATGTTATCATATATCGATGCCACTGTCCTACACAG
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCACACAG
* * * *
33458292 GGTCTTACACG-AAGTCGA-TTAACGATGCCGA-TGTCCCACACAT
1 GGTCTTACATGTAA-TC-ACATATCGATGCC-ACTGTCCCACACAG
** * * *
33458335 GGTCTTACACATAATCACA-ATACAATGTCACTGTCCCATACAG
1 GGTCTTACATGTAATCACATAT-CGATGCCACTGTCCCACACAG
* *
33458378 GGTCTTACATGTAATCACA-ATACAATGCCACTATCCCACACAG
1 GGTCTTACATGTAATCACATAT-CGATGCCACTGTCCCACACAG
*
33458421 GGTCTTACATGTAATCACATCTCGAT
1 GGTCTTACATGTAATCACATATCGAT
33458447 AACCTAATGT
Statistics
Matches: 127, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
42 4 0.03
43 118 0.93
44 5 0.04
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCACTGTCCCACACAG
Found at i:33460313 original size:14 final size:14
Alignment explanation
Indices: 33460294--33460321 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
33460284 AAATTTTATT
33460294 TATTGACTTAGTGG
1 TATTGACTTAGTGG
33460308 TATTGACTTAGTGG
1 TATTGACTTAGTGG
33460322 CATTATAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.29, T:0.43
Consensus pattern (14 bp):
TATTGACTTAGTGG
Found at i:33468261 original size:20 final size:20
Alignment explanation
Indices: 33468236--33468276 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
33468226 ATTTTAAGCA
*
33468236 AAGTTACAGTTTTCCAACAC
1 AAGTTACAGTTTTCAAACAC
*
33468256 AAGTTACGGTTTTCAAACAC
1 AAGTTACAGTTTTCAAACAC
33468276 A
1 A
33468277 CAACATGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (20 bp):
AAGTTACAGTTTTCAAACAC
Found at i:33480334 original size:134 final size:134
Alignment explanation
Indices: 33480084--33481148 Score: 2015
Period size: 134 Copynumber: 7.9 Consensus size: 134
33480074 ATAACGGATA
* *
33480084 TTGCCTTCCTGTATTTGGCAGTGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACA
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC--TGACTACA
33480149 GTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTA
64 GTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTA
33480214 CAGATC
129 CAGATC
33480220 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
33480285 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
66 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
33480350 GATC
131 GATC
33480354 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
33480419 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
66 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
33480484 GATC
131 GATC
33480488 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
33480553 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
66 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
33480618 GATC
131 GATC
33480622 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
33480687 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
66 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
33480752 GATC
131 GATC
33480756 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
33480821 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
66 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
33480886 GATC
131 GATC
33480890 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
* *
33480955 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGTAGTGGAATAGATTGAAGATTGCA
66 GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
33481020 GATC
131 GATC
*
33481024 TTGCCTTCCTGTATTTGGCAGCGAAGCAGATC-ACAGATGGCAGATTTTACCTCCCTGACTACAG
1 TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGA-AGATGGCAGATTTTACCTCCCTGACTACAG
* * * *
33481088 TAGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTAGAATAGAGTGAAGA
65 TGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
33481149 AAACCAGATC
Statistics
Matches: 918, Mismatches: 10, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
133 1 0.00
134 864 0.94
136 53 0.06
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGCCTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
GGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACA
GATC
Found at i:33481253 original size:44 final size:41
Alignment explanation
Indices: 33481148--33481269 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 41
33481138 TAGAGTGAAG
*
33481148 AAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCATATC
1 AAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATC
* * * *
33481189 ACATCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-C
1 AAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATC
33481228 GAAAGAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAG
1 ---A-AAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAG
33481270 GTCGAAGATG
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 28 0.42
41 5 0.07
42 1 0.01
43 4 0.06
44 28 0.42
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (41 bp):
AAAACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATC
Found at i:33481433 original size:130 final size:130
Alignment explanation
Indices: 33481237--33481919 Score: 1210
Period size: 130 Copynumber: 5.3 Consensus size: 130
33481227 CGAAAGAAAC
33481237 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTCGATTA
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTCGATTA
33481302 CAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTA
66 CAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTA
33481367 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTCGATTA
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTCGATTA
33481432 CAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTA
66 CAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTA
33481497 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTCGATTA
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTCGATTA
33481562 CAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTA
66 CAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTA
*
33481627 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCAGATTTTACCTCACT-GATT
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTC-CTCGATT
* ** *
33481691 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCTCTGGGCAACAGTGGAATAGA-TCGAAGAT
65 ACAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGT-GAAGAT
33481755 TA
129 TA
33481757 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCC-CTGATT
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTC-GATT
* * ** **
33481821 ACGGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGAGC
65 ACAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATT
33481886 A
130 A
*
33481887 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAG
33481920 ATCACATCCA
Statistics
Matches: 537, Mismatches: 11, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
129 2 0.00
130 532 0.99
131 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (130 bp):
CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGCGGATTTTACCTCCTCGATTA
CAGTGGAGTACATTAAAGCCAGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTA
Found at i:33481871 original size:43 final size:43
Alignment explanation
Indices: 33481325--33481883 Score: 190
Period size: 43 Copynumber: 12.9 Consensus size: 43
33481315 TAAAGCCAGT
* * **
33481325 AGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTAC
1 AGTTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* ** * * * *
33481368 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGC
1 AGTTC-TATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* * * * *** * * *** *
33481412 GGATTTTACCT-CCTCGATTACAGTGGAGTACATTAAAGCCAGT
1 AG-TTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* * **
33481455 AGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTAC
1 AGTTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* ** * * * *
33481498 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGC
1 AGTTC-TATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* * * * *** * * *** *
33481542 GGATTTTACCT-CCTCGATTACAGTGGAGTACATTAAAGCCAGT
1 AG-TTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* * **
33481585 AGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTAC
1 AGTTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* ** * * * *
33481628 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGC
1 AGTTC-TATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* * * *** * * *
33481672 AGATTTTACCTCACT-GATTACAGTGGAGTACATTGAAGCTGGT
1 AG-TTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* * * **
33481715 AGTTCTATCTCTCTGGGCAACAGTGGAATAGATCGAAGATTAC
1 AGTTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* ** * * * *
33481758 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGATGGC
1 AGTTC-TATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* * * *** * * * *
33481802 GGATTTTACCTCCCT-GATTACGGTGGAGTACATTGAAGCTGGT
1 AG-TTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
* *
33481845 AGTTCTATCTCCCTGGGCAACAGTGGAATAGAGTGAAGA
1 AGTTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGA
33481884 GCACAGATCT
Statistics
Matches: 336, Mismatches: 168, Indels: 24
0.64 0.32 0.05
Matches are distributed among these distances:
42 31 0.09
43 160 0.48
44 141 0.42
45 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (43 bp):
AGTTCTATCTCCCTGGGCAACAGTGGAGTAGATTGAAGATGGC
Found at i:33484837 original size:31 final size:31
Alignment explanation
Indices: 33484734--33484837 Score: 86
Period size: 31 Copynumber: 3.3 Consensus size: 31
33484724 ATTATCATCA
* * *
33484734 AATGTATATAAACTTTAAACATGAATAGCCG
1 AATGCATATACACTTTAAACATAAATAGCCG
* * * *
33484765 AATGCTTATACAC-ATAACAAATATTATCA-CCG
1 AATGCATATACACTTTAA-ACATA-AAT-AGCCG
* *
33484797 AATGTATATACACTTTAAACATAAATAGCTG
1 AATGCATATACACTTTAAACATAAATAGCCG
33484828 AATGCATATA
1 AATGCATATA
33484838 TATATATGCC
Statistics
Matches: 54, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
30 4 0.07
31 26 0.48
32 20 0.37
33 4 0.07
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (31 bp):
AATGCATATACACTTTAAACATAAATAGCCG
Found at i:33484871 original size:69 final size:69
Alignment explanation
Indices: 33484658--33484877 Score: 254
Period size: 63 Copynumber: 3.2 Consensus size: 69
33484648 AACTCTTAAA
* * * * *
33484658 ACCGAATGCATATACAATTTAAAACATGAATAGCCGAATGTGTATATACATATATGCTTAACAAA
1 ACCGAATGTATATACACTTT-AAACATGAATAGCCGAA--TGCATATATATATATGCATAACAAA
33484723 TATTATC
63 TATTATC
* * * *
33484730 ATCAAATGTATATAAACTTTAAACATGAATAGCCGAATGC---T-TATACA--CATAACAAATAT
1 ACCGAATGTATATACACTTTAAACATGAATAGCCGAATGCATATATATATATGCATAACAAATAT
33484789 TATC
66 TATC
* * * *
33484793 ACCGAATGTATATACACTTTAAACATAAATAGCTGAATGCATATATATATATGCCTAACAAGTAT
1 ACCGAATGTATATACACTTTAAACATGAATAGCCGAATGCATATATATATATGCATAACAAATAT
33484858 TATC
66 TATC
33484862 ACCGAATGTATATACA
1 ACCGAATGTATATACA
33484878 TGTTCTTAAA
Statistics
Matches: 125, Mismatches: 17, Indels: 15
0.80 0.11 0.10
Matches are distributed among these distances:
63 50 0.40
65 4 0.03
66 2 0.02
67 5 0.04
69 32 0.26
71 17 0.14
72 15 0.12
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (69 bp):
ACCGAATGTATATACACTTTAAACATGAATAGCCGAATGCATATATATATATGCATAACAAATAT
TATC
Found at i:33485073 original size:41 final size:41
Alignment explanation
Indices: 33484990--33485107 Score: 146
Period size: 41 Copynumber: 2.9 Consensus size: 41
33484980 CTGTTCAGTA
* * * * * * *
33484990 CACCGGCTTTTAGCCTGCTAGACTTATAGTCCGAATTGTTT
1 CACCGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTT
33485031 CACCGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTT
* * *
33485072 CACCAGCATCAAACCTGCTAGACATAAAGTCTGAAA
1 CACCGGCATTAAGCCTGCTAGACATAAAGTCTGAAA
33485108 CATTCAATCA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTT
Found at i:33493787 original size:17 final size:17
Alignment explanation
Indices: 33493754--33493862 Score: 60
Period size: 17 Copynumber: 5.9 Consensus size: 17
33493744 AATTGTAAAC
33493754 ATTTTTTAT-ATTGTTAT
1 ATTTTTTATAATT-TTAT
*
33493771 ATTTTATATAATTTTAT
1 ATTTTTTATAATTTTAT
33493788 -TCTTTTTATAATTCTATATT
1 AT-TTTTTATAATT-T-TA-T
*
33493808 ATTTTTGAATAATTGTAATAAT
1 ATTTTT-TATAATT-T--T-AT
* * *
33493830 ATTATTTGTAATTTTCT
1 ATTTTTTATAATTTTAT
33493847 ATATTTTTATAATTTT
1 AT-TTTTTATAATTTT
33493863 TTACGCTTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.01
17 25 0.35
18 16 0.22
19 2 0.03
20 6 0.08
21 13 0.18
22 8 0.11
23 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (17 bp):
ATTTTTTATAATTTTAT
Found at i:33493807 original size:19 final size:17
Alignment explanation
Indices: 33493756--33493862 Score: 65
Period size: 18 Copynumber: 5.8 Consensus size: 17
33493746 TTGTAAACAT
33493756 TTTTTAT-ATTGTTA-TA
1 TTTTTATAATT-TTATTA
*
33493772 TTTTATATAATTTTATTC
1 TTTT-TATAATTTTATTA
33493790 TTTTTATAATTCTATATTA
1 TTTTTATAATT-T-TATTA
*
33493809 TTTTTGAATAATTGTAATAATA
1 TTTTT--ATAATT-T--TATTA
* *
33493831 TTATTTGTAATTTTCTATA
1 TT-TTTATAATTTTAT-TA
33493850 TTTTTATAATTTT
1 TTTTTATAATTTT
33493863 TTACGCTTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
16 4 0.05
17 13 0.18
18 20 0.27
19 13 0.18
20 1 0.01
21 12 0.16
22 7 0.10
23 3 0.04
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.64
Consensus pattern (17 bp):
TTTTTATAATTTTATTA
Found at i:33493897 original size:33 final size:33
Alignment explanation
Indices: 33493860--33493922 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
33493850 TTTTTATAAT
**
33493860 TTTTTACGCTTTTCTATATTTTAAAAAATTCAC
1 TTTTTACAATTTTCTATATTTTAAAAAATTCAC
* * *
33493893 TTTTTACAATTTTTTTTATTTTAAATAATT
1 TTTTTACAATTTTCTATATTTTAAAAAATT
33493923 TTTAATGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.59
Consensus pattern (33 bp):
TTTTTACAATTTTCTATATTTTAAAAAATTCAC
Found at i:33493967 original size:25 final size:27
Alignment explanation
Indices: 33493938--33493995 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
33493928 TGTTTTCTAA
33493938 ATTTTTAAAAAATTTC-AT-TTATAAT
1 ATTTTTAAAAAATTTCTATATTATAAT
* * * *
33493963 ATTTTTTATAATTTTCTATATTATTAT
1 ATTTTTAAAAAATTTCTATATTATAAT
33493990 ATTTTT
1 ATTTTT
33493996 TCACTTGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 13 0.48
26 2 0.07
27 12 0.44
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTTAAAAAATTTCTATATTATAAT
Found at i:33494807 original size:38 final size:38
Alignment explanation
Indices: 33494691--33494807 Score: 99
Period size: 40 Copynumber: 3.0 Consensus size: 38
33494681 CGTTTGGACA
* * *
33494691 AAAAACGCCACTAAAAAATAAGCATTAGCGGCGCTTCTAT
1 AAAAACGCCGCT-AAAAATAAGCATTAGCGGCG-TTTTTT
* ** * * * *
33494731 AAAAACGCCGCTCAAGGTCGAGAACTAGCGGCGCTTTTT
1 AAAAACGCCGCTAAAAAT-AAGCATTAGCGGCGTTTTTT
**
33494770 GGAAACGCCGCTAAAAATAAGCATTAGCGGCGTTTTTT
1 AAAAACGCCGCTAAAAATAAGCATTAGCGGCGTTTTTT
33494808 TAAAGCACCA
Statistics
Matches: 57, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
38 16 0.28
39 19 0.33
40 22 0.39
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (38 bp):
AAAAACGCCGCTAAAAATAAGCATTAGCGGCGTTTTTT
Found at i:33497111 original size:19 final size:19
Alignment explanation
Indices: 33497087--33497123 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
33497077 CGGCGTTTTT
33497087 ATAAAAAACGCCACAAAAA
1 ATAAAAAACGCCACAAAAA
33497106 ATAAAAAACGCCACAAAA
1 ATAAAAAACGCCACAAAA
33497124 TAAAATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.68, C:0.22, G:0.05, T:0.05
Consensus pattern (19 bp):
ATAAAAAACGCCACAAAAA
Found at i:33497123 original size:17 final size:18
Alignment explanation
Indices: 33497087--33497128 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
33497077 CGGCGTTTTT
33497087 ATAAAAAACGCCACAAAAA
1 ATAAAAAACGCCAC-AAAA
33497106 ATAAAAAACGCCAC-AAA
1 ATAAAAAACGCCACAAAA
33497123 ATAAAA
1 ATAAAA
33497129 TTTACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 9 0.39
19 14 0.61
ACGTcount: A:0.69, C:0.19, G:0.05, T:0.07
Consensus pattern (18 bp):
ATAAAAAACGCCACAAAA
Found at i:33497539 original size:129 final size:128
Alignment explanation
Indices: 33497105--33497552 Score: 842
Period size: 128 Copynumber: 3.5 Consensus size: 128
33497095 CGCCACAAAA
33497105 AATAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCCTC
1 AATAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCCTC
33497170 GTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTATAAAACGCCGCAATAGATAAGC
66 GTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTATAAAACGCCGCAATAGATAAGC
33497233 AATAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCCTC
1 AATAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCCTC
33497298 GTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTATAAAACGCCGCAATAGATAAGC
66 GTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTATAAAACGCCGCAATAGATAAGC
33497361 AATAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCCTC
1 AATAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCCTC
* *
33497426 GTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTAAAAAACGCCGCAATAGATAAGA
66 GTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTATAAAACGCCGCAATAGATAAGC
* * *
33497489 AATAGCAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAGCACCATTTTTTTAAATTCCC
1 AATA-AAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCC
33497553 CACCCCCTCC
Statistics
Matches: 314, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
128 258 0.82
129 56 0.18
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (128 bp):
AATAAAAAACGCCACAAAATAAAATTTACTTTTAAAAAAATAACGCCATTTTTTTAAATTCCCTC
GTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTGTGTATAAAACGCCGCAATAGATAAGC
Found at i:33500731 original size:37 final size:37
Alignment explanation
Indices: 33500690--33500765 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
33500680 GATTCTATTG
33500690 TATTTATATTGCATGGCTGCACCATGTATTTCTTAAC
1 TATTTATATTGCATGGCTGCACCATGTATTTCTTAAC
33500727 TATTTATATTGCATGGCTGCACCATGTATTTCTTAAC
1 TATTTATATTGCATGGCTGCACCATGTATTTCTTAAC
33500764 TA
1 TA
33500766 GTTTGATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.43
Consensus pattern (37 bp):
TATTTATATTGCATGGCTGCACCATGTATTTCTTAAC
Found at i:33501237 original size:43 final size:43
Alignment explanation
Indices: 33501164--33501431 Score: 392
Period size: 43 Copynumber: 6.2 Consensus size: 43
33501154 ATATTATGTT
* ** *
33501164 TTTAGCGCCGTTTGTGATAAAAAGCGCCGCTAAAGGTCTTGATC
1 TTTAGCGGCGTTTGTG-GGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
33501208 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCTTAGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
33501251 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGACTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
33501294 TTTAACGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
33501337 TTTAGCGGCGTTTGTGGTATAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
33501380 TTTAGCGGTGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTTGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
33501423 TTTAGCGGC
1 TTTAGCGGC
33501432 ATTTTTTCCG
Statistics
Matches: 201, Mismatches: 23, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
43 187 0.93
44 14 0.07
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:33505702 original size:30 final size:31
Alignment explanation
Indices: 33505661--33505734 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
33505651 TCAAAATTAT
*
33505661 ACATG-AACTTTAAGT-TGGTTCAATTGAAC
1 ACATGAAACTTTAAGTATGGTTCAAATGAAC
* * *
33505690 ACATGAAACTTTAATTATGGTTCAAATGTAT
1 ACATGAAACTTTAAGTATGGTTCAAATGAAC
*
33505721 ACATAAAACTTTAA
1 ACATGAAACTTTAA
33505735 CATTGATTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 5 0.13
30 9 0.24
31 24 0.63
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (31 bp):
ACATGAAACTTTAAGTATGGTTCAAATGAAC
Found at i:33506398 original size:3 final size:3
Alignment explanation
Indices: 33506390--33506441 Score: 54
Period size: 3 Copynumber: 17.0 Consensus size: 3
33506380 TGTTTATTTA
*
33506390 TAT TAT TAT TACT GTAT TAT TAT TAG T-T TAT TAT TA- TAT TAT ATAT
1 TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
33506436 TAT TAT
1 TAT TAT
33506442 ATACTTACTT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
2 3 0.07
3 32 0.76
4 5 0.12
5 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:33506409 original size:14 final size:14
Alignment explanation
Indices: 33506390--33506426 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
33506380 TGTTTATTTA
33506390 TATTATTATTACTG
1 TATTATTATTACTG
* *
33506404 TATTATTATTAGTT
1 TATTATTATTACTG
33506418 TATTATTAT
1 TATTATTAT
33506427 ATTATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (14 bp):
TATTATTATTACTG
Found at i:33506412 original size:22 final size:22
Alignment explanation
Indices: 33506362--33506446 Score: 77
Period size: 22 Copynumber: 3.9 Consensus size: 22
33506352 TTTTTAGCTT
* *
33506362 TTATTATATTGTTAATACTGT-
1 TTATTATATTATTATTACTGTA
33506383 TTATTTATATTATTATTACTGTA
1 TTA-TTATATTATTATTACTGTA
* * *
33506406 TTATTATTAGT-TTATTATTATA
1 TTATTA-TATTATTATTACTGTA
33506428 TTA-TATATTATTATATACT
1 TTATTATATTATTAT-TACT
33506447 TACTTATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
20 3 0.06
21 9 0.17
22 34 0.65
23 6 0.12
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (22 bp):
TTATTATATTATTATTACTGTA
Found at i:33506420 original size:11 final size:13
Alignment explanation
Indices: 33506390--33506437 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 13
33506380 TGTTTATTTA
33506390 TATTATTATTACTG
1 TATTATTATTAC-G
33506404 TATTATTATTA-G
1 TATTATTATTACG
33506416 T-TTATTATTA--
1 TATTATTATTACG
33506426 TATTATATATTA
1 TATTAT-TATTA
33506438 TTATATACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 1 0.03
11 13 0.41
12 7 0.22
14 11 0.34
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (13 bp):
TATTATTATTACG
Found at i:33506429 original size:8 final size:8
Alignment explanation
Indices: 33506387--33506443 Score: 55
Period size: 8 Copynumber: 6.8 Consensus size: 8
33506377 TACTGTTTAT
33506387 TTATATTA
1 TTATATTA
33506395 TTATTACTGTA
1 TTA-TA-T-TA
33506406 TTATTATTA
1 TTA-TATTA
33506415 GTT-TATTA
1 -TTATATTA
33506423 TTATATTA
1 TTATATTA
33506431 -TATATTA
1 TTATATTA
33506438 TTATAT
1 TTATAT
33506444 ACTTACTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
7 9 0.21
8 18 0.42
9 4 0.09
10 4 0.09
11 8 0.19
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (8 bp):
TTATATTA
Found at i:33510595 original size:26 final size:25
Alignment explanation
Indices: 33510554--33510619 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
33510544 ATAAAATTCA
*
33510554 TCTTTGCATTCATTTTTGAGCCAA-TAT
1 TCTTT-CATTC-TTTTTGA-ACAATTAT
*
33510581 TCTTTCATTCTTTTTGAATAATTAT
1 TCTTTCATTCTTTTTGAACAATTAT
33510606 TCTTTCATTCTTTT
1 TCTTTCATTCTTTT
33510620 GGATTTTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 2 0.06
25 24 0.67
26 5 0.14
27 5 0.14
ACGTcount: A:0.20, C:0.17, G:0.06, T:0.58
Consensus pattern (25 bp):
TCTTTCATTCTTTTTGAACAATTAT
Found at i:33511420 original size:15 final size:15
Alignment explanation
Indices: 33511401--33511465 Score: 80
Period size: 16 Copynumber: 4.3 Consensus size: 15
33511391 AGAAAAATAT
*
33511401 AAAAAAATCAAAATT
1 AAAAAAATCAAAATC
33511416 AAAAAAATCAAAAATC
1 AAAAAAATC-AAAATC
33511432 AGAAAAAATCAAAATC
1 A-AAAAAATCAAAATC
33511448 AAAATAAA--AAAATC
1 AAAA-AAATCAAAATC
33511462 AAAA
1 AAAA
33511466 TTGGAAAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.22
15 12 0.26
16 16 0.35
17 8 0.17
ACGTcount: A:0.75, C:0.09, G:0.02, T:0.14
Consensus pattern (15 bp):
AAAAAAATCAAAATC
Found at i:33511474 original size:14 final size:14
Alignment explanation
Indices: 33511399--33511451 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 14
33511389 AAAGAAAAAT
33511399 ATAAAAAAATCAAA
1 ATAAAAAAATCAAA
33511413 ATTAAAAAAATCAAAA
1 A-TAAAAAAATC-AAA
33511429 ATCAGAAAAAATCAAA
1 AT-A-AAAAAATCAAA
33511445 ATCAAAA
1 AT-AAAA
33511452 TAAAAAAATC
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.03
15 14 0.40
16 12 0.34
17 8 0.23
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.15
Consensus pattern (14 bp):
ATAAAAAAATCAAA
Found at i:33512143 original size:16 final size:16
Alignment explanation
Indices: 33512122--33512154 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33512112 TGGAAATCTG
33512122 AGAATGAAGAGTCTAA
1 AGAATGAAGAGTCTAA
33512138 AGAATGAAGAGTCTAA
1 AGAATGAAGAGTCTAA
33512154 A
1 A
33512155 TTAAGACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.24, T:0.18
Consensus pattern (16 bp):
AGAATGAAGAGTCTAA
Found at i:33513108 original size:50 final size:50
Alignment explanation
Indices: 33513054--33513310 Score: 158
Period size: 50 Copynumber: 5.1 Consensus size: 50
33513044 AATGGAAAAT
*
33513054 ATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAG
1 ATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * * * ** * * ** * ** * *
33513104 ATTGAAGCTACGATGGCGAATC-TGGTTCCCCCGACATTGCAATTAAAAAT
1 ATTGAAGCCACAACGGCGGATCTTACTT-CCCTGGCGGTGCAGTGGAACAG
* **
33513154 ATTGAAGCCACAACGACGGATCTTACTTCCCTGGCGGTATAGTGGAACAG
1 ATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * * ** * * ** * ** * *
33513204 ATTGAAGCTACGAGGGCGGATC-TGGTTCCCCCGACATTGCAATTAAAAAT
1 ATTGAAGCCACAACGGCGGATCTTACTT-CCCTGGCGGTGCAGTGGAACAG
* * *
33513254 ATTGAAGCCACAATGGCGGATCTTACTTCTCTGGCGGTGCAGCGGAACAG
1 ATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAACAG
33513304 ATTGAAG
1 ATTGAAG
33513311 TCATAACGAC
Statistics
Matches: 136, Mismatches: 67, Indels: 8
0.64 0.32 0.04
Matches are distributed among these distances:
49 6 0.04
50 124 0.91
51 6 0.04
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (50 bp):
ATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAACAG
Found at i:33513167 original size:100 final size:100
Alignment explanation
Indices: 33513049--33513310 Score: 452
Period size: 100 Copynumber: 2.6 Consensus size: 100
33513039 ATTACAATGG
33513049 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
1 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
33513114 CGATGGCGAATCTGGTTCCCCCGACATTGCAATTA
66 CGAGGGCGAATCTGGTTCCCCCGACATTGCAATTA
* *
33513149 AAAATATTGAAGCCACAACGACGGATCTTACTTCCCTGGCGGTATAGTGGAACAGATTGAAGCTA
1 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
33513214 CGAGGGCGGATCTGGTTCCCCCGACATTGCAATTA
66 CGAGGGCGAATCTGGTTCCCCCGACATTGCAATTA
* * * *
33513249 AAAATATTGAAGCCACAATGGCGGATCTTACTTCTCTGGCGGTGCAGCGGAACAGATTGAAG
1 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAG
33513311 TCATAACGAC
Statistics
Matches: 152, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 152 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (100 bp):
AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
CGAGGGCGAATCTGGTTCCCCCGACATTGCAATTA
Found at i:33513339 original size:100 final size:98
Alignment explanation
Indices: 33513049--33513351 Score: 437
Period size: 100 Copynumber: 3.0 Consensus size: 98
33513039 ATTACAATGG
33513049 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
1 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
33513114 CGATGGCGAATCTGGTTCCCCCGACATTGCAATTA
66 CGA--GCGAATCTGGTTCCCCCGACATTGCAATTA
* *
33513149 AAAATATTGAAGCCACAACGACGGATCTTACTTCCCTGGCGGTATAGTGGAACAGATTGAAGCTA
1 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
*
33513214 CGAGGGCGGATCTGGTTCCCCCGACATTGCAATTA
66 CGA--GCGAATCTGGTTCCCCCGACATTGCAATTA
* * * *
33513249 AAAATATTGAAGCCACAATGGCGGATCTTACTTCTCTGGCGGTGCAGCGGAACAGATTGAAGTCA
1 AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAG-C-
* * * *
33513314 TAACGA-CGAATCTTGTTTCCTCGACATTGCAGTTA
64 T-ACGAGCGAATCTGGTTCCCCCGACATTGCAATTA
33513349 AAA
1 AAA
33513352 CAGACTGAGA
Statistics
Matches: 185, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
100 179 0.97
101 1 0.01
102 1 0.01
103 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (98 bp):
AAAATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
CGAGCGAATCTGGTTCCCCCGACATTGCAATTA
Found at i:33513477 original size:44 final size:43
Alignment explanation
Indices: 33513361--33513656 Score: 182
Period size: 44 Copynumber: 6.9 Consensus size: 43
33513351 ACAGACTGAG
* *
33513361 AAAGCAA-A-TCTTATCCCCCTGAAGTTGCAGTGGGGCAGATT
1 AAAGCAATAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
* * *
33513402 GAAG-ATGGTGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 AAAGCA--AT-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
* * **
33513447 AAAGCCAATAGTCTTATCTCCCTGAGGTTGCGGTGGAGTGGATT
1 AAAG-CAATAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
** * * * * *
33513491 AAAATAAAAAATCTTATCTCTCTAAAGTTGCAGAGG-GCAGA-T
1 -AAAGCAATAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
* * * * * *
33513533 --CGCATTTAGTCTTATCTCCTTGAAGTTACAGAGGAGCAGACTGAA
1 AAAGCA-ATAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T--T
* *
33513578 AAAGCAA-A-TCTTATCCCCCTGAAGTTGCAGTGGGGCAGATT
1 AAAGCAATAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
*
33513619 GAAGCTACA-AGTCTTATCTTCCC-GAAGTTGCAGTGGAG
1 AAAGC-A-ATAGTCTTATC-TCCCTGAAGTTGCAGTGGAG
33513657 TAGACTAGAG
Statistics
Matches: 191, Mismatches: 44, Indels: 37
0.70 0.16 0.14
Matches are distributed among these distances:
39 1 0.01
40 23 0.12
41 12 0.06
42 2 0.01
43 6 0.03
44 101 0.53
45 42 0.22
47 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
AAAGCAATAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
Found at i:33514843 original size:3 final size:3
Alignment explanation
Indices: 33514835--33514889 Score: 60
Period size: 3 Copynumber: 18.0 Consensus size: 3
33514825 TGTTTATTTA
*
33514835 TAT TAT TAT TACT GTAT TAT TAT TAG T-T TAT TAT TA- TAT TAT ATAT
1 TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
33514881 TAT TAT TAT
1 TAT TAT TAT
33514890 ACTTACTTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 3 0.07
3 35 0.78
4 5 0.11
5 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:33514854 original size:14 final size:14
Alignment explanation
Indices: 33514835--33514871 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
33514825 TGTTTATTTA
33514835 TATTATTATTACTG
1 TATTATTATTACTG
* *
33514849 TATTATTATTAGTT
1 TATTATTATTACTG
33514863 TATTATTAT
1 TATTATTAT
33514872 ATTATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (14 bp):
TATTATTATTACTG
Found at i:33514857 original size:22 final size:22
Alignment explanation
Indices: 33514807--33514888 Score: 80
Period size: 22 Copynumber: 3.8 Consensus size: 22
33514797 TTTAGCTTTT
* *
33514807 TTATTATATTGTTAATACTGT-
1 TTATTATATTATTATTACTGTA
33514828 TTATTTATATTATTATTACTGTA
1 TTA-TTATATTATTATTACTGTA
* * *
33514851 TTATTATTAGT-TTATTATTATA
1 TTATTA-TATTATTATTACTGTA
33514873 TTA-TATATTATTATTA
1 TTATTATATTATTATTA
33514889 TACTTACTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
20 3 0.06
21 11 0.22
22 31 0.61
23 6 0.12
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (22 bp):
TTATTATATTATTATTACTGTA
Found at i:33514890 original size:11 final size:12
Alignment explanation
Indices: 33514835--33514889 Score: 60
Period size: 11 Copynumber: 4.5 Consensus size: 12
33514825 TGTTTATTTA
33514835 TATTATTATTACTG
1 TATTATTATTA--G
33514849 TATTATTATTAG
1 TATTATTATTAG
33514861 T-TTATTATTA-
1 TATTATTATTAG
*
33514871 TATTATATATTAT
1 TATTAT-TATTAG
33514884 TATTAT
1 TATTAT
33514890 ACTTACTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
10 1 0.03
11 13 0.34
12 7 0.18
13 6 0.16
14 11 0.29
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (12 bp):
TATTATTATTAG
Found at i:33515166 original size:9 final size:9
Alignment explanation
Indices: 33515152--33515182 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33515142 GTTAAACGAA
33515152 TCGAGTTAT
1 TCGAGTTAT
*
33515161 TCGAGTTAA
1 TCGAGTTAT
33515170 TCGAGTTAT
1 TCGAGTTAT
33515179 TCGA
1 TCGA
33515183 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:33515260 original size:9 final size:9
Alignment explanation
Indices: 33515236--33515272 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
33515226 TGAGTTTTCG
*
33515236 AATTCCAAT
1 AATTCGAAT
*
33515245 AACTCGAAT
1 AATTCGAAT
33515254 AATTCGAAT
1 AATTCGAAT
33515263 AATTCGAAT
1 AATTCGAAT
33515272 A
1 A
33515273 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:33515801 original size:11 final size:11
Alignment explanation
Indices: 33515771--33515806 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
33515761 TGTATGAATA
* *
33515771 TATTTTATATG
1 TATTTTATTTT
33515782 TATTTTATTTT
1 TATTTTATTTT
33515793 TATTTTATTTT
1 TATTTTATTTT
33515804 TAT
1 TAT
33515807 GACTTATGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:33518544 original size:18 final size:20
Alignment explanation
Indices: 33518518--33518557 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
33518508 TAAGTGAATC
33518518 ATTTAAAATT-G-ATAAAAA
1 ATTTAAAATTAGAATAAAAA
*
33518536 ATTTGAAATTAGAATAAAAA
1 ATTTAAAATTAGAATAAAAA
33518556 AT
1 AT
33518558 CGACGTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 1 0.05
20 9 0.47
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (20 bp):
ATTTAAAATTAGAATAAAAA
Found at i:33525921 original size:39 final size:38
Alignment explanation
Indices: 33525877--33525959 Score: 91
Period size: 39 Copynumber: 2.1 Consensus size: 38
33525867 TTTTTTATAA
33525877 TTTTAT-ATAAATTACTAATATTTTGT-TACATATTTA-AAT
1 TTTTATAAT-AATTAC-AATATTTT-TATA-ATATTTAGAAT
*
33525916 TTTTATAATATTTACAATATTTTTATAATATTTAGTAAT
1 TTTTATAATAATTACAATATTTTTATAATATTTAG-AAT
33525955 TTTTA
1 TTTTA
33525960 ATATTTTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
37 8 0.21
38 10 0.26
39 19 0.49
40 2 0.05
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (38 bp):
TTTTATAATAATTACAATATTTTTATAATATTTAGAAT
Found at i:33525947 original size:37 final size:39
Alignment explanation
Indices: 33525870--33525973 Score: 110
Period size: 38 Copynumber: 2.7 Consensus size: 39
33525860 AACTATTTTT
33525870 TTTATAATTTTATATAA-A-TTACTAATATTTTGTTACATA
1 TTTATAATTTT-TATAATATTTAC-AATATTTTGTTACATA
33525909 TTTA-AATTTTTATAATATTTACAATATTTT-TATA-ATA
1 TTTATAATTTTTATAATATTTACAATATTTTGT-TACATA
* *
33525946 TTTAGTAATTTTTAATATTTTTTACAAT
1 TTTA-TAATTTTT-ATAATATTTACAAT
33525974 GTTTAAATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
37 13 0.23
38 17 0.30
39 15 0.26
40 12 0.21
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (39 bp):
TTTATAATTTTTATAATATTTACAATATTTTGTTACATA
Found at i:33525949 original size:9 final size:9
Alignment explanation
Indices: 33525906--33525965 Score: 54
Period size: 9 Copynumber: 6.7 Consensus size: 9
33525896 ATTTTGTTAC
33525906 ATATTTA-A
1 ATATTTATA
*
33525914 ATTTTTATA
1 ATATTTATA
*
33525923 ATATTTACA
1 ATATTTATA
33525932 ATATTTTTATA
1 ATA--TTTATA
33525943 ATATTTAGTA
1 ATATTTA-TA
33525953 AT-TTT-TA
1 ATATTTATA
33525960 ATATTT
1 ATATTT
33525966 TTTACAATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
7 4 0.09
8 9 0.21
9 18 0.42
10 4 0.09
11 8 0.19
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (9 bp):
ATATTTATA
Found at i:33525959 original size:10 final size:9
Alignment explanation
Indices: 33525909--33525985 Score: 50
Period size: 9 Copynumber: 8.3 Consensus size: 9
33525899 TTGTTACATA
33525909 TTTA-AATT
1 TTTATAATT
*
33525917 TTTATAATA
1 TTTATAATT
*
33525926 TTTACAATATT
1 TTTA-TA-ATT
*
33525937 TTTATAATA
1 TTTATAATT
33525946 TTTAGTAATT
1 TTTA-TAATT
*
33525956 TTTAATATTT
1 TTT-ATAATT
* *
33525966 TTTACAATG
1 TTTATAATT
33525975 TTTA-AATT
1 TTTATAATT
33525983 TTT
1 TTT
33525986 TATAGTTTTG
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
8 10 0.19
9 20 0.38
10 16 0.30
11 7 0.13
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (9 bp):
TTTATAATT
Found at i:33531176 original size:15 final size:15
Alignment explanation
Indices: 33531156--33531190 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
33531146 GATATAATTT
33531156 AAAATGAATATTGTA
1 AAAATGAATATTGTA
*
33531171 AAAATGAATATTTTA
1 AAAATGAATATTGTA
33531186 AAAAT
1 AAAAT
33531191 ATTAGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
AAAATGAATATTGTA
Found at i:33547404 original size:31 final size:29
Alignment explanation
Indices: 33547335--33547408 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
33547325 ACAAAATAAT
**
33547335 AACATAAGTGACTAAAATGTAACTTTTCA
1 AACATAAGTGACTAAAATGTAACTTGGCA
33547364 AACATAAGTGACTAAAATGTAACTTGAGGCA
1 AACATAAGTGACTAAAATGTAACTT--GGCA
*
33547395 AACAAAAGTGACTA
1 AACATAAGTGACTA
33547409 TTTTTGTAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 25 0.62
31 15 0.38
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.24
Consensus pattern (29 bp):
AACATAAGTGACTAAAATGTAACTTGGCA
Found at i:33550259 original size:10 final size:9
Alignment explanation
Indices: 33550232--33550456 Score: 57
Period size: 10 Copynumber: 23.3 Consensus size: 9
33550222 AAAAATCAAC
*
33550232 AAATCATAA
1 AAATTATAA
*
33550241 GAATTATAA
1 AAATTATAA
33550250 AAACTTATAA
1 AAA-TTATAA
*
33550260 AAAGTATTTAA
1 AAA-T-TATAA
*
33550271 AAATTCACAA
1 AAATT-ATAA
*
33550281 AAACTAATAA
1 AAA-TTATAA
*
33550291 ATATTATAA
1 AAATTATAA
33550300 AAGCA-TATAA
1 AA--ATTATAA
** *
33550310 ACTTTTTAA
1 AAATTATAA
*
33550319 TAAATTACAA
1 -AAATTATAA
33550329 ATAATTTATAA
1 A-AA-TTATAA
*
33550340 AAATAAT-A
1 AAATTATAA
33550348 AAA-TAT-A
1 AAATTATAA
33550355 AAATATACTAA
1 AAAT-TA-TAA
33550366 AAA-T-TAA
1 AAATTATAA
33550373 AAATGATATATA
1 AAAT--TATA-A
*
33550385 AATTTATAAA
1 AAATTAT-AA
33550395 AAATTATAA
1 AAATTATAA
* *
33550404 ATACTTGTAAA
1 A-AATTAT-AA
*
33550415 AAATTCTAA
1 AAATTATAA
*
33550424 TAAACTATTAA
1 -AAATTA-TAA
*
33550435 AATTTTATAA
1 AA-ATTATAA
*
33550445 AAGTTATAA
1 AAATTATAA
33550454 AAA
1 AAA
33550457 AAATCATATA
Statistics
Matches: 157, Mismatches: 34, Indels: 50
0.65 0.14 0.21
Matches are distributed among these distances:
7 12 0.08
8 4 0.03
9 40 0.25
10 67 0.43
11 30 0.19
12 4 0.03
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (9 bp):
AAATTATAA
Found at i:33550354 original size:16 final size:16
Alignment explanation
Indices: 33550335--33550376 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
33550325 ACAAATAATT
33550335 TATAAAAATAATAAAA
1 TATAAAAATAATAAAA
*
33550351 TATAAAATATACTAAAA
1 TATAAAA-ATAATAAAA
33550368 -ATTAAAAAT
1 TA-TAAAAAT
33550377 GATATATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
TATAAAAATAATAAAA
Found at i:33550960 original size:8 final size:8
Alignment explanation
Indices: 33550947--33551042 Score: 66
Period size: 9 Copynumber: 10.5 Consensus size: 8
33550937 ATTTACATGT
33550947 ATTTTATA
1 ATTTTATA
33550955 ATTTTATAA
1 ATTTTAT-A
*
33550964 TATTTTAGA
1 -ATTTTATA
33550973 ATTTTTATA
1 A-TTTTATA
*
33550982 AGTTTTGGTA
1 A-TTTT-ATA
33550992 ATATTTATA
1 AT-TTTATA
33551001 AGTTTTTAATA
1 A--TTTT-ATA
33551012 ATCTTTTATA
1 A--TTTTATA
33551022 ATTTTATA
1 ATTTTATA
33551030 ATTTTTATA
1 A-TTTTATA
33551039 ATTT
1 ATTT
33551043 ATGACAACTT
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
8 19 0.26
9 25 0.35
10 19 0.26
11 9 0.12
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.59
Consensus pattern (8 bp):
ATTTTATA
Done.