Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 12 of 187
Found at i:2979456 original size:61 final size:61
Alignment explanation
Indices: 2979387--2979539 Score: 306
Period size: 61 Copynumber: 2.5 Consensus size: 61
2979377 TCATTTCACT
2979387 AAGGGTGCAGTGCATGTGTTCCATAATGATCAGCTAATTTAATTGATTAAGTTGAATACCG
1 AAGGGTGCAGTGCATGTGTTCCATAATGATCAGCTAATTTAATTGATTAAGTTGAATACCG
2979448 AAGGGTGCAGTGCATGTGTTCCATAATGATCAGCTAATTTAATTGATTAAGTTGAATACCG
1 AAGGGTGCAGTGCATGTGTTCCATAATGATCAGCTAATTTAATTGATTAAGTTGAATACCG
2979509 AAGGGTGCAGTGCATGTGTTCCATAATGATC
1 AAGGGTGCAGTGCATGTGTTCCATAATGATC
2979540 TAAATAATAT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 92 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (61 bp):
AAGGGTGCAGTGCATGTGTTCCATAATGATCAGCTAATTTAATTGATTAAGTTGAATACCG
Found at i:2980373 original size:234 final size:234
Alignment explanation
Indices: 2979959--2980423 Score: 851
Period size: 234 Copynumber: 2.0 Consensus size: 234
2979949 GACACTAGTC
* *
2979959 AAGGGCAACTAGTTTTACCTAGAAAGGGAGTTGAAGGGGGGAAGGGAATCTTTCAACTTGGAGAT
1 AAGGACAACTAGTTTTACCTAGAAAGGGAGTTGAAGGGGGGAAAGGAATCTTTCAACTTGGAGAT
2980024 TTGATCAAGAAGCATGTAGGAAAAGATTAGCACAAATGATTGTGATTGATGAATTACCTTTCAAG
66 TTGATCAAGAAGCATGTAGGAAAAGATTAGCACAAATGATTGTGATTGATGAATTACCTTTCAAG
*
2980089 TTTGTTGAAAGTGAAGGTTTTAAGAAACTTATGTTTGTGGCATGTCCTAGGTTTCATATTCCTTC
131 TTTGTTGAAAGTGAAGGTTTTAAAAAACTTATGTTTGTGGCATGTCCTAGGTTTCATATTCCTTC
2980154 ACGAACTACTATGACTAGGAATATTTATCAATTGTAGGA
196 ACGAACTACTATGACTAGGAATATTTATCAATTGTAGGA
2980193 AAGGACAACTAGTTTTACCTAGAAAGGGAGTTGAAGGGGGGAAAGGAATCTTTCAACTTGGAGAT
1 AAGGACAACTAGTTTTACCTAGAAAGGGAGTTGAAGGGGGGAAAGGAATCTTTCAACTTGGAGAT
*
2980258 TTGATCGAGAAGCATGTAGG-AAAGAATTAGCACAAATGATTGTGATTGATGAATTACCTTTCAA
66 TTGATCAAGAAGCATGTAGGAAAAG-ATTAGCACAAATGATTGTGATTGATGAATTACCTTTCAA
*
2980322 GTTTGTTGAAAGTGAAGGTTTTAAAAAATTTATGTTTGTGGCATGTCCTAGGTTTCATATTCCTT
130 GTTTGTTGAAAGTGAAGGTTTTAAAAAACTTATGTTTGTGGCATGTCCTAGGTTTCATATTCCTT
* *
2980387 CACGAACTACTATGACTAGGGATGTTTATCAATTGTA
195 CACGAACTACTATGACTAGGAATATTTATCAATTGTA
2980424 TTTAGATGAA
Statistics
Matches: 223, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
233 4 0.02
234 219 0.98
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (234 bp):
AAGGACAACTAGTTTTACCTAGAAAGGGAGTTGAAGGGGGGAAAGGAATCTTTCAACTTGGAGAT
TTGATCAAGAAGCATGTAGGAAAAGATTAGCACAAATGATTGTGATTGATGAATTACCTTTCAAG
TTTGTTGAAAGTGAAGGTTTTAAAAAACTTATGTTTGTGGCATGTCCTAGGTTTCATATTCCTTC
ACGAACTACTATGACTAGGAATATTTATCAATTGTAGGA
Found at i:2982316 original size:17 final size:17
Alignment explanation
Indices: 2982296--2982356 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
2982286 ATTTCAAGAC
2982296 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* ***
2982313 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
2982332 TTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
2982350 TTATGTA
1 TTATGTA
2982357 GTGATACAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 16 0.48
18 4 0.12
19 4 0.12
20 9 0.27
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:2982337 original size:37 final size:37
Alignment explanation
Indices: 2982291--2982361 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
2982281 TGTTAATTTC
2982291 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
2982328 AAGATTTATGTAATGTTTTTAATTATGTAGTGAT
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGAT
2982362 ACAATTCGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.32, C:0.03, G:0.17, T:0.48
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:2982378 original size:9 final size:9
Alignment explanation
Indices: 2982364--2982423 Score: 84
Period size: 9 Copynumber: 6.4 Consensus size: 9
2982354 GTAGTGATAC
2982364 AATTCGGGT
1 AATTCGGGT
2982373 AATTCGGGT
1 AATTCGGGT
*
2982382 AATTCAGGT
1 AATTCGGGT
2982391 AATTCGGGT
1 AATTCGGGT
*
2982400 AATTTTTGGGT
1 AA--TTCGGGT
2982411 AATTCGGGT
1 AATTCGGGT
2982420 AATT
1 AATT
2982424 TTTAAGCAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
9 37 0.82
11 8 0.18
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.38
Consensus pattern (9 bp):
AATTCGGGT
Found at i:2982413 original size:20 final size:20
Alignment explanation
Indices: 2982369--2982426 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
2982359 GATACAATTC
*
2982369 GGGTAATTCGGGTAA--TTC
1 GGGTAATTCGGGTAATTTTT
*
2982387 AGGTAATTCGGGTAATTTTT
1 GGGTAATTCGGGTAATTTTT
2982407 GGGTAATTCGGGTAATTTTT
1 GGGTAATTCGGGTAATTTTT
2982427 AAGCAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
18 14 0.40
20 21 0.60
ACGTcount: A:0.22, C:0.07, G:0.29, T:0.41
Consensus pattern (20 bp):
GGGTAATTCGGGTAATTTTT
Found at i:2983591 original size:12 final size:12
Alignment explanation
Indices: 2983557--2983591 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2983547 CTTGTAAGGA
* *
2983557 TTGCTTCTTTAT
1 TTGCTTATTTGT
2983569 TTGCTTATTTGT
1 TTGCTTATTTGT
2983581 TTGCTTATTTG
1 TTGCTTATTTG
2983592 AAATGGTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.11, G:0.14, T:0.66
Consensus pattern (12 bp):
TTGCTTATTTGT
Found at i:2985543 original size:27 final size:27
Alignment explanation
Indices: 2985495--2985774 Score: 146
Period size: 27 Copynumber: 10.4 Consensus size: 27
2985485 CAATATCTGG
* * *
2985495 ACCGAAATACCCCCAAAAGGTAAAATA
1 ACCGAAATACCCTCGAAGGGTAAAATA
* *
2985522 ACCAAAATACCCTCGAAGGGTAAAATG
1 ACCGAAATACCCTCGAAGGGTAAAATA
* * *
2985549 ATCGAAATACCCTCGATGGGTAAAATG
1 ACCGAAATACCCTCGAAGGGTAAAATA
* * * * * *
2985576 ACCGTAATGCCC-CTATAAGATAAAATG
1 ACCGAAATACCCTCGA-AGGGTAAAATA
* * *
2985603 ACTGAAATGCCC-CCATAGGGTAAAATA
1 ACCGAAATACCCTCGA-AGGGTAAAATA
* *
2985630 ATCGAAATACCCTCGATGGGTAAGAA-A
1 ACCGAAATACCCTCGAAGGGTAA-AATA
* * *
2985657 ACCGAAATGCTCTC-ATATGGTAAAATA
1 ACCGAAATACCCTCGA-AGGGTAAAATA
* * * *
2985684 ATCGAAATACCCCCGTA-GGTAGAAT-
1 ACCGAAATACCCTCGAAGGGTAAAATA
* *
2985709 ACCAAAATACCC-CTGTAA-GGTAAAATG
1 ACCGAAATACCCTC-G-AAGGGTAAAATA
* * *
2985736 A-CTATAATACCCTTGTAGGGTAAAATA
1 ACCGA-AATACCCTCGAAGGGTAAAATA
*
2985763 ACCGTAATACCC
1 ACCGAAATACCC
2985775 CTGTAAGGTA
Statistics
Matches: 193, Mismatches: 47, Indels: 26
0.73 0.18 0.10
Matches are distributed among these distances:
24 1 0.01
25 11 0.06
26 23 0.12
27 153 0.79
28 5 0.03
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
ACCGAAATACCCTCGAAGGGTAAAATA
Found at i:2985691 original size:81 final size:81
Alignment explanation
Indices: 2985495--2985702 Score: 208
Period size: 81 Copynumber: 2.6 Consensus size: 81
2985485 CAATATCTGG
* * * * ** * *
2985495 ACCGAAATACCCCCAAAAGGTAAAATAACCAAAATACCCTCGA-AGGGTAAAATGATCGAAATAC
1 ACCGAAATGCCCCTATAAGATAAAATAACTGAAATACCC-CCATAGGGTAAAATAATCGAAATAC
*
2985559 CCTCGATGGGTAAAATG
65 CCTCGATGGGTAAAATA
* * *
2985576 ACCGTAATGCCCCTATAAGATAAAATGACTGAAATGCCCCCATAGGGTAAAATAATCGAAATACC
1 ACCGAAATGCCCCTATAAGATAAAATAACTGAAATACCCCCATAGGGTAAAATAATCGAAATACC
2985641 CTCGATGGGTAAGAA-A
66 CTCGATGGGTAA-AATA
* * * *
2985657 ACCGAAATG-CTCTCATATGGTAAAATAA-TCGAAATACCCCCGTAGG
1 ACCGAAATGCCCCT-ATAAGATAAAATAACT-GAAATACCCCCATAGG
2985703 TAGAATACCA
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
80 6 0.06
81 96 0.92
82 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (81 bp):
ACCGAAATGCCCCTATAAGATAAAATAACTGAAATACCCCCATAGGGTAAAATAATCGAAATACC
CTCGATGGGTAAAATA
Found at i:2985779 original size:27 final size:27
Alignment explanation
Indices: 2985675--2985958 Score: 268
Period size: 27 Copynumber: 10.6 Consensus size: 27
2985665 GCTCTCATAT
* * * *
2985675 GGTAAAATAATCGAAATACCCCCGTA-
1 GGTAAAATGACCGTAATACCCCTGTAG
* ** *
2985701 GGTAGAAT-ACCAAAATACCCCTGTAA
1 GGTAAAATGACCGTAATACCCCTGTAG
** *
2985727 GGTAAAATGACTATAATACCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
2985754 GGTAAAATAACCGTAATACCCCTGTAA
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
2985781 GGTAAAATGACCGTAATTCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * * *
2985808 GGTAAAATGGCTGTAATGCCTCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * * *
2985835 GATAAAATGATCGTAATGCCTCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
2985862 GGTAAAATGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
2985889 GGTAAAATGACCGTAATGCCCATGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
2985916 GGTCAAATGACCATAATACCCCTGTA-
1 GGTAAAATGACCGTAATACCCCTGTAG
2985942 GGTAAAATGACCGTAAT
1 GGTAAAATGACCGTAAT
2985959 GCCCTAGTGG
Statistics
Matches: 218, Mismatches: 38, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
25 14 0.06
26 29 0.13
27 175 0.80
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:2986055 original size:24 final size:25
Alignment explanation
Indices: 2986023--2986069 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
2986013 CTGTGGTTAA
2986023 ATGACTGATTTGTCTGTG-TTTGGT
1 ATGACTGATTTGTCTGTGATTTGGT
*
2986047 ATGACTGATTTGTTTGTGATTTG
1 ATGACTGATTTGTCTGTGATTTG
2986070 AATGACTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.15, C:0.06, G:0.28, T:0.51
Consensus pattern (25 bp):
ATGACTGATTTGTCTGTGATTTGGT
Found at i:2986074 original size:24 final size:24
Alignment explanation
Indices: 2986022--2986076 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
2986012 TCTGTGGTTA
2986022 AATGACTGATTTGTCTGTGTTTGG
1 AATGACTGATTTGTCTGTGTTTGG
* *
2986046 TATGACTGATTTGTTTGTGATTT-G
1 AATGACTGATTTGTCTGTG-TTTGG
2986070 AATGACT
1 AATGACT
2986077 AATTCTGAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.20, C:0.07, G:0.25, T:0.47
Consensus pattern (24 bp):
AATGACTGATTTGTCTGTGTTTGG
Found at i:2986193 original size:27 final size:26
Alignment explanation
Indices: 2986149--2986214 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
2986139 GGAAGTATTG
*
2986149 TACTGGTGGCTCTGCCACA-ATCACTGT
1 TACTGGTGGCT-TGCCACATAT-ACTAT
2986176 TACTGGTGGCTTGACCACATATACTAT
1 TACTGGTGGCTTG-CCACATATACTAT
*
2986203 TACTGGTAGCTT
1 TACTGGTGGCTT
2986215 TGCTGCGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 31 0.89
28 2 0.06
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.33
Consensus pattern (26 bp):
TACTGGTGGCTTGCCACATATACTAT
Found at i:2986234 original size:26 final size:26
Alignment explanation
Indices: 2986196--2986249 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
2986186 TTGACCACAT
*
2986196 ATACTATTACTGGTAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* *
2986222 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
2986248 AT
1 AT
2986250 GCTACTAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.37
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:2986307 original size:32 final size:31
Alignment explanation
Indices: 2986252--2986498 Score: 187
Period size: 32 Copynumber: 7.7 Consensus size: 31
2986242 GCTGCGATGC
* * *
2986252 TACTAATGGTTTTGTGCCAATCATAGTATCGT
1 TACTGATGGCTTTGTGCCGATCATAGTA-CGT
* *
2986284 TACTGATAGCTTTGTGTCGATCATAGTACTGT
1 TACTGATGGCTTTGTGCCGATCATAGTAC-GT
*
2986316 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTA-CGT
* * *
2986348 TACTAATGGCTGTGTGCCGATCAT-TTCACTGT
1 TACTGATGGCTTTGTGCCGATCATAGT-AC-GT
* * * * *
2986380 TACTGATGGGTGTATGCCGATCATATTACGGC
1 TACTGATGGCTTTGTGCCGATCATAGTAC-GT
*
2986412 TACTGATGGCTTTGTGCTGATCAT-GTTACCGT
1 TACTGATGGCTTTGTGCCGATCATAG-TA-CGT
* * **
2986444 TACTCATGGCTGTGTGTTGATCATA-T-CGTT
1 TACTGATGGCTTTGTGCCGATCATAGTACG-T
*
2986474 GCTACTGATGGCTTTGTGCCAATCA
1 --TACTGATGGCTTTGTGCCGATCA
2986499 CATTATTGTA
Statistics
Matches: 175, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
29 2 0.01
30 1 0.01
31 5 0.03
32 163 0.93
33 4 0.02
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCGATCATAGTACGT
Found at i:2986369 original size:64 final size:63
Alignment explanation
Indices: 2986264--2986498 Score: 227
Period size: 64 Copynumber: 3.7 Consensus size: 63
2986254 CTAATGGTTT
* * * * * *
2986264 TGTGCCAATCATAGTATCGTTACTGATAGCTTTGTGTCGATCATAGTACTGTTACTGATGGCTT
1 TGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCGATCAT-GTACTGTTACTGATGGCTG
* * * *
2986328 TGTGCCGATCATATTACCGTTACTAATGGCTGTGTGCCGATCATTTCACTGTTACTGATGGGTG
1 TGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCGATCATGT-ACTGTTACTGATGGCTG
* * * * * *
2986392 TATGCCGATCATATTACGGCTACTGATGGCTTTGTGCTGATCATGTTACCGTTACTCATGGCTG
1 TGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCGATCATG-TACTGTTACTGATGGCTG
** **** * *
2986456 TGTGTTGATCATATCGTTGCTACTGATGGCTTTGTGCCAATCA
1 TGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCGATCA
2986499 CATTATTGTA
Statistics
Matches: 140, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
63 1 0.01
64 138 0.99
65 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (63 bp):
TGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCGATCATGTACTGTTACTGATGGCTG
Found at i:2986480 original size:96 final size:96
Alignment explanation
Indices: 2986301--2986484 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 96
2986291 AGCTTTGTGT
* *
2986301 CGATCATAGTACTGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTGTGTGCC
1 CGATCATAGTACGGCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTGTGTGCC
* *
2986366 GATCATTTCACTGTTACTGATGGGTGTATGC
66 GATCATATCACTGCTACTGATGGGTGTATGC
* * * * **
2986397 CGATCATATTACGGCTACTGATGGCTTTGTGCTGATCATGTTACCGTTACTCATGGCTGTGTGTT
1 CGATCATAGTACGGCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTGTGTGCC
**
2986462 GATCATATCGTTGCTACTGATGG
66 GATCATATCACTGCTACTGATGG
2986485 CTTTGTGCCA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (96 bp):
CGATCATAGTACGGCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTGTGTGCC
GATCATATCACTGCTACTGATGGGTGTATGC
Found at i:2994107 original size:9 final size:9
Alignment explanation
Indices: 2994079--2994135 Score: 73
Period size: 9 Copynumber: 6.4 Consensus size: 9
2994069 TTTGGTTAAA
2994079 AATTAACCG
1 AATTAACCG
2994088 AATT-ACCG
1 AATTAACCG
*
2994096 AATTAACTG
1 AATTAACCG
2994105 AATT-ACCTG
1 AATTAACC-G
*
2994114 AATTACCCG
1 AATTAACCG
2994123 AATTAACCG
1 AATTAACCG
2994132 AATT
1 AATT
2994136 GAATCACTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 10 0.24
9 29 0.71
10 2 0.05
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:2994267 original size:6 final size:6
Alignment explanation
Indices: 2994175--2994251 Score: 145
Period size: 6 Copynumber: 12.8 Consensus size: 6
2994165 ACTTTTAGAC
*
2994175 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTAAGT
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT
2994223 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
2994252 AATTTTATTT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.18, C:0.00, G:0.17, T:0.65
Consensus pattern (6 bp):
TTTAGT
Found at i:2994275 original size:20 final size:20
Alignment explanation
Indices: 2994180--2994264 Score: 110
Period size: 18 Copynumber: 4.5 Consensus size: 20
2994170 TAGACTTTAG
2994180 TTTTAGTTTTAGTTTTAG--
1 TTTTAGTTTTAGTTTTAGAA
2994198 TTTTAGTTTTAGTTTTAG--
1 TTTTAGTTTTAGTTTTAGAA
*
2994216 TTTAAGTTTTAGTTTTAG--
1 TTTTAGTTTTAGTTTTAGAA
2994234 TTTTAGTTTTAGTTTTAGAA
1 TTTTAGTTTTAGTTTTAGAA
*
2994254 TTTTATTTTTA
1 TTTTAGTTTTA
2994265 TTTATTAAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
18 52 0.84
20 10 0.16
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (20 bp):
TTTTAGTTTTAGTTTTAGAA
Found at i:2995940 original size:19 final size:19
Alignment explanation
Indices: 2995913--2995950 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
2995903 ATTACTGATT
* *
2995913 ACAGTTCTATTCTATTACA
1 ACAGCTCTATTCCATTACA
2995932 ACAGCTCTATTCCATTACA
1 ACAGCTCTATTCCATTACA
2995951 GCGAACCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (19 bp):
ACAGCTCTATTCCATTACA
Found at i:2996737 original size:41 final size:41
Alignment explanation
Indices: 2996677--2996758 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
2996667 AATGTCAATG
* *
2996677 AAAAGATCCCATTTACCTTTTGGGCGAGCCATAAATTCTAC
1 AAAAGATACCATTTACCTTTGGGGCGAGCCATAAATTCTAC
*
2996718 AAAAGATACCATTTCCCTTTGGGGCGAGCCATAAATTCTAC
1 AAAAGATACCATTTACCTTTGGGGCGAGCCATAAATTCTAC
2996759 TATTACACCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (41 bp):
AAAAGATACCATTTACCTTTGGGGCGAGCCATAAATTCTAC
Found at i:2997312 original size:25 final size:25
Alignment explanation
Indices: 2997282--2997329 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
2997272 TTTATATAAT
2997282 TTTTAAA-AGAAAAATTAAAACTAAA
1 TTTTAAATA-AAAAATTAAAACTAAA
2997307 TTTTAAATAAAAAATTAAAACTA
1 TTTTAAATAAAAAATTAAAACTA
2997330 GCATATCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (25 bp):
TTTTAAATAAAAAATTAAAACTAAA
Found at i:2998067 original size:14 final size:14
Alignment explanation
Indices: 2998048--2998078 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
2998038 TAATTGATTT
2998048 TTTAATTAACTAAA
1 TTTAATTAACTAAA
*
2998062 TTTAATTAATTAAA
1 TTTAATTAACTAAA
2998076 TTT
1 TTT
2998079 TCTAAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAATTAACTAAA
Found at i:3003037 original size:35 final size:34
Alignment explanation
Indices: 3002998--3003093 Score: 106
Period size: 35 Copynumber: 2.8 Consensus size: 34
3002988 ATATGTTTAC
3002998 AATTTTAATATATTTTAATATATTAAGTATATTAA
1 AATTTTAATATATTTTAATATATTAAGT-TATTAA
* * * *
3003033 AATTTTAATATATTTAAATTTTTTTAAGTTTTTAA
1 AATTTTAATATATTTTAA-TATATTAAGTTATTAA
3003068 AATTTTTAA-AT-TTTTAAATATATTAA
1 AA-TTTTAATATATTTT-AATATATTAA
3003094 AATTTTTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
34 9 0.18
35 28 0.55
36 14 0.27
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (34 bp):
AATTTTAATATATTTTAATATATTAAGTTATTAA
Found at i:3003040 original size:17 final size:16
Alignment explanation
Indices: 3002998--3003054 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
3002988 ATATGTTTAC
3002998 AATTTTAATATATTTTAA
1 AATTTTAATATA--TTAA
* *
3003016 TATATTAAGTATATTAA
1 AATTTTAA-TATATTAA
*
3003033 AATTTTAATATATTTA
1 AATTTTAATATATTAA
3003049 AATTTT
1 AATTTT
3003055 TTTAAGTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 13 0.39
17 10 0.30
18 6 0.18
19 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
AATTTTAATATATTAA
Found at i:3003055 original size:17 final size:17
Alignment explanation
Indices: 3002981--3003055 Score: 64
Period size: 17 Copynumber: 4.3 Consensus size: 17
3002971 ATACTTAATT
*
3002981 TTTTTAAATATGTTTACAA
1 TTTTT-AATATATTTA-AA
*
3003000 -TTTTAATATATTTTAA
1 TTTTTAATATATTTAAA
*
3003016 TATATTAAGTATA-TTAAA
1 T-TTTTAA-TATATTTAAA
*
3003034 ATTTTAATATATTTAAA
1 TTTTTAATATATTTAAA
3003051 TTTTT
1 TTTTT
3003056 TTAAGTTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
16 6 0.13
17 22 0.49
18 13 0.29
19 4 0.09
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTTTAATATATTTAAA
Found at i:3003059 original size:27 final size:27
Alignment explanation
Indices: 3003029--3003082 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
3003019 ATTAAGTATA
*
3003029 TTAAAATTTTAATATATTTAAATTTTT
1 TTAAAATTTTAAAATATTTAAATTTTT
** *
3003056 TTAAGTTTTTAAAATTTTTAAATTTTT
1 TTAAAATTTTAAAATATTTAAATTTTT
3003083 AAATATATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (27 bp):
TTAAAATTTTAAAATATTTAAATTTTT
Found at i:3003073 original size:17 final size:17
Alignment explanation
Indices: 3003029--3003100 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
3003019 ATTAAGTATA
*
3003029 TTAAAA-TTTTAATATAT
1 TTAAAATTTTTAA-ATTT
* *
3003046 TTAAATTTTTTTAAGTTT
1 TTAAA-ATTTTTAAATTT
3003064 TTAAAATTTTTAAATTT
1 TTAAAATTTTTAAATTT
* *
3003081 TTAAATATATTAAAATTT
1 TTAAA-ATTTTTAAATTT
3003099 TT
1 TT
3003101 TTTTCTCTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
17 20 0.44
18 19 0.42
19 6 0.13
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (17 bp):
TTAAAATTTTTAAATTT
Found at i:3003081 original size:7 final size:8
Alignment explanation
Indices: 3003029--3003100 Score: 54
Period size: 8 Copynumber: 8.2 Consensus size: 8
3003019 ATTAAGTATA
*
3003029 TTAAAATT
1 TTAAATTT
*
3003037 TTAATATAT
1 TTAA-ATTT
3003046 TTAAATTTTT
1 TTAAA--TTT
*
3003056 TTAAGTTT
1 TTAAATTT
3003064 TTAAAATTT
1 TT-AAATTT
3003073 TTAAATTT
1 TTAAATTT
3003081 TTAAATATAT
1 TTAAAT-T-T
*
3003091 TAAAATTT
1 TTAAATTT
3003099 TT
1 TT
3003101 TTTTCTCTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
8 24 0.47
9 15 0.29
10 12 0.24
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (8 bp):
TTAAATTT
Found at i:3006754 original size:52 final size:52
Alignment explanation
Indices: 3006686--3006787 Score: 195
Period size: 52 Copynumber: 2.0 Consensus size: 52
3006676 TATCTAACTA
*
3006686 TAATTCAGAATTTGTAATTTGTCTTGGTTTTATTTTTTCATCTTTATTAAGT
1 TAATTCAGAATTTGTAATTTGTCTTGGTTTTATTTTTTCATATTTATTAAGT
3006738 TAATTCAGAATTTGTAATTTGTCTTGGTTTTATTTTTTCATATTTATTAA
1 TAATTCAGAATTTGTAATTTGTCTTGGTTTTATTTTTTCATATTTATTAA
3006788 ATATTATATC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.25, C:0.07, G:0.11, T:0.58
Consensus pattern (52 bp):
TAATTCAGAATTTGTAATTTGTCTTGGTTTTATTTTTTCATATTTATTAAGT
Found at i:3010488 original size:126 final size:126
Alignment explanation
Indices: 3010340--3010588 Score: 471
Period size: 126 Copynumber: 2.0 Consensus size: 126
3010330 TGGAATGAGA
*
3010340 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
3010405 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
3010466 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
* *
3010531 AGAAACTTTGAAACTTTGGAGAAACGAGTTTTGATTTTTGAAATGGGTATTTCGAGTC
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTC
3010589 ATGTTTTTCA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 120 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (126 bp):
TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
Found at i:3010511 original size:14 final size:15
Alignment explanation
Indices: 3010492--3010523 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3010482 TTTGTAATAA
3010492 AAATTTT-AAAACTT
1 AAATTTTGAAAACTT
3010506 AAATTTTGAAAACTT
1 AAATTTTGAAAACTT
3010521 AAA
1 AAA
3010524 AATTTGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (15 bp):
AAATTTTGAAAACTT
Found at i:3018080 original size:126 final size:126
Alignment explanation
Indices: 3017932--3018936 Score: 1974
Period size: 126 Copynumber: 8.0 Consensus size: 126
3017922 TGGAATGAGA
3017932 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
3017997 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
3018058 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
3018123 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
3018184 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
3018249 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
3018310 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
3018375 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
3018436 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
3018501 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
3018562 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
3018627 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
3018688 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
3018753 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
*
3018814 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
* * *
3018879 AGAAACTTTGAAACTTTGGAGAAACGAGTTTTGATTTCTGAAATGGGTATTTCGAGTC
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTC
3018937 ATGTTTTTCA
Statistics
Matches: 875, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 875 1.00
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.39
Consensus pattern (126 bp):
TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
Found at i:3018859 original size:14 final size:15
Alignment explanation
Indices: 3018840--3018871 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3018830 TTTGTAATAA
3018840 AAATTTT-AAAACTT
1 AAATTTTGAAAACTT
3018854 AAATTTTGAAAACTT
1 AAATTTTGAAAACTT
3018869 AAA
1 AAA
3018872 AATTTGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (15 bp):
AAATTTTGAAAACTT
Found at i:3026428 original size:126 final size:126
Alignment explanation
Indices: 3026280--3026528 Score: 462
Period size: 126 Copynumber: 2.0 Consensus size: 126
3026270 TGGAATGAGA
*
3026280 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAATTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
*
3026345 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTTTGAAATGGGTATTTAGAGTCCTG
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTCTGAAATGGGTATTTAGAGTCCTG
3026406 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
1 TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
* *
3026471 AGAAACTTTGAAACTTTGGAGAAACGAGTTTTGATTTCTGAAATGGGTATTTCGAGTC
66 AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTCTGAAATGGGTATTTAGAGTC
3026529 ATGTTTTTCA
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 119 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.38
Consensus pattern (126 bp):
TAATCGTAATTTGAAATTTGTAATAAAAATTTTAAAACTTAAATTTTGAAAACTTAAAAATTTGG
AGAAACTTTGAAACTTTGGAGAAACAAGTTTTGATTTCTGAAATGGGTATTTAGAGTCCTG
Found at i:3026451 original size:14 final size:15
Alignment explanation
Indices: 3026432--3026463 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3026422 TTTGTAATAA
3026432 AAATTTT-AAAACTT
1 AAATTTTGAAAACTT
3026446 AAATTTTGAAAACTT
1 AAATTTTGAAAACTT
3026461 AAA
1 AAA
3026464 AATTTGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (15 bp):
AAATTTTGAAAACTT
Found at i:3026814 original size:18 final size:17
Alignment explanation
Indices: 3026768--3026806 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
3026758 AAAATATATA
*
3026768 TTAAGTATATTAAAATT
1 TTAAATATATTAAAATT
3026785 TTAAATATATTAAAATT
1 TTAAATATATTAAAATT
3026802 TTAAA
1 TTAAA
3026807 ATTGATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAATATATTAAAATT
Found at i:3028016 original size:23 final size:24
Alignment explanation
Indices: 3027990--3028036 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
3027980 CAAAGCATGC
*
3027990 AAAT-CAATTTTATATACATATTA
1 AAATACAATTATATATACATATTA
*
3028013 AAATGATAATTATATATACATATT
1 AAAT-ACAATTATATATACATATT
3028037 TTTTAAGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
25 16 0.80
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATACAATTATATATACATATTA
Found at i:3047488 original size:18 final size:18
Alignment explanation
Indices: 3047467--3047502 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3047457 CCCATCCCTT
* *
3047467 CTCCTCCTCCACTTCCAC
1 CTCCGCCTCCACCTCCAC
3047485 CTCCGCCTCCACCTCCAC
1 CTCCGCCTCCACCTCCAC
3047503 TCGAACCACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.64, G:0.03, T:0.22
Consensus pattern (18 bp):
CTCCGCCTCCACCTCCAC
Found at i:3047792 original size:6 final size:6
Alignment explanation
Indices: 3047781--3047824 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
3047771 AGAACCTTTA
* * *
3047781 CCACCT CCACCT CCACCT CCCCCT CCACCA CCACCA CCACCT CC
1 CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT CC
3047825 CACCCCTTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.18, C:0.70, G:0.00, T:0.11
Consensus pattern (6 bp):
CCACCT
Found at i:3047910 original size:9 final size:9
Alignment explanation
Indices: 3047898--3047936 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
3047888 ATAACTACTG
3047898 CCACCTCCA
1 CCACCTCCA
* *
3047907 CCACCTTCT
1 CCACCTCCA
3047916 CCACCTCCA
1 CCACCTCCA
*
3047925 CCACCACCA
1 CCACCTCCA
3047934 CCA
1 CCA
3047937 ATACCTTGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.23, C:0.64, G:0.00, T:0.13
Consensus pattern (9 bp):
CCACCTCCA
Found at i:3048129 original size:6 final size:6
Alignment explanation
Indices: 3048112--3048155 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
3048102 TTACCAGAGG
* * * *
3048112 CACCTC CTCCTC CGCCTC CTCCTC CACCTC CACCTC CCCCTC CA
1 CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC CA
3048156 GCACCACCGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.09, C:0.68, G:0.02, T:0.20
Consensus pattern (6 bp):
CACCTC
Found at i:3048131 original size:12 final size:12
Alignment explanation
Indices: 3048112--3048154 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
3048102 TTACCAGAGG
3048112 CACCTCCTCCTC
1 CACCTCCTCCTC
*
3048124 CGCCTCCTCCTC
1 CACCTCCTCCTC
*
3048136 CACCTCCACCTC
1 CACCTCCTCCTC
*
3048148 CCCCTCC
1 CACCTCC
3048155 AGCACCACCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.07, C:0.70, G:0.02, T:0.21
Consensus pattern (12 bp):
CACCTCCTCCTC
Found at i:3053822 original size:6 final size:6
Alignment explanation
Indices: 3053813--3053837 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
3053803 TATCTTTATT
3053813 TACACA TACACA TACACA TACACA T
1 TACACA TACACA TACACA TACACA T
3053838 TCACTTTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (6 bp):
TACACA
Found at i:3057505 original size:6 final size:6
Alignment explanation
Indices: 3057488--3057540 Score: 79
Period size: 6 Copynumber: 8.7 Consensus size: 6
3057478 TAGGATTGCA
* *
3057488 ATTTTCC ATTTTC ATTTTC ATTTTC ATTTTC ATTTCC ATTTTC ATTTCC
1 ATTTT-C ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC
3057537 ATTT
1 ATTT
3057541 GTGGAAACTT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
6 38 0.88
7 5 0.12
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (6 bp):
ATTTTC
Found at i:3060376 original size:22 final size:22
Alignment explanation
Indices: 3060348--3060393 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
3060338 ATTGCTTGCA
3060348 TTAATTAAAAGTTCTCTTTCCC
1 TTAATTAAAAGTTCTCTTTCCC
*
3060370 TTAATTAAAAGTTCTTTTTCCC
1 TTAATTAAAAGTTCTCTTTCCC
3060392 TT
1 TT
3060394 TCTCTTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.04, T:0.50
Consensus pattern (22 bp):
TTAATTAAAAGTTCTCTTTCCC
Found at i:3060663 original size:34 final size:31
Alignment explanation
Indices: 3060634--3060692 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
3060624 GTGACTTAAA
*
3060634 TAAA-AAAAACTTTTGAATAGTTCAATGACT
1 TAAATAAAAACTTTTAAATAGTTCAATGACT
*
3060664 TAAATGAAAACTTTTAAATAGTTCAATGA
1 TAAATAAAAACTTTTAAATAGTTCAATGA
3060693 TCAAATTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.34
Consensus pattern (31 bp):
TAAATAAAAACTTTTAAATAGTTCAATGACT
Found at i:3066170 original size:23 final size:23
Alignment explanation
Indices: 3066143--3066241 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
3066133 AGTGTTATTG
*
3066143 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
3066166 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
3066189 AACAGTGGTAGCTTAGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
3066212 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
3066235 ATCAGTG
1 ATCAGTG
3066242 TTGCAGTTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:3070012 original size:14 final size:14
Alignment explanation
Indices: 3069974--3070013 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
3069964 ACATAAAAGT
*
3069974 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
3069988 AAATCATTTTACGG
1 AAAACATTTTACAG
3070002 AAAACATTTTAC
1 AAAACATTTTAC
3070014 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:3072196 original size:6 final size:6
Alignment explanation
Indices: 3072185--3072226 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
3072175 AGCAACACTG
* * *
3072185 GATATA GATATA GATATA CATATA CATATA CATATA GATATA
1 GATATA GATATA GATATA GATATA GATATA GATATA GATATA
3072227 TATACCATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (6 bp):
GATATA
Found at i:3072202 original size:12 final size:12
Alignment explanation
Indices: 3072185--3072226 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
3072175 AGCAACACTG
*
3072185 GATATAGATATA
1 GATATACATATA
3072197 GATATACATATA
1 GATATACATATA
*
3072209 CATATACATATA
1 GATATACATATA
3072221 GATATA
1 GATATA
3072227 TATACCATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (12 bp):
GATATACATATA
Found at i:3076430 original size:21 final size:21
Alignment explanation
Indices: 3076389--3076430 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
3076379 CTTATACCAG
* *
3076389 TCCCCAGCCAGTACAGTGAAA
1 TCCCCAGCCAGGACAGGGAAA
3076410 TCCCCAG-CAGGACTAGGGAAA
1 TCCCCAGCCAGGAC-AGGGAAA
3076431 GGTACAGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.31, G:0.24, T:0.12
Consensus pattern (21 bp):
TCCCCAGCCAGGACAGGGAAA
Found at i:3095018 original size:21 final size:21
Alignment explanation
Indices: 3094992--3095031 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
3094982 ACCCTTCAGT
*
3094992 GGTATCGCGATAACCACTTTG
1 GGTATCGCAATAACCACTTTG
*
3095013 GGTATCGCAATATCCACTT
1 GGTATCGCAATAACCACTT
3095032 GCCAAGAAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (21 bp):
GGTATCGCAATAACCACTTTG
Found at i:3095288 original size:36 final size:36
Alignment explanation
Indices: 3095248--3095319 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
3095238 GAGAAAAGGA
*
3095248 GGCCACACTAAATTAGTTTTAGCTTAGGGTTTTATC
1 GGCCACACTAAATTAGTTTTAGCTTAGAGTTTTATC
3095284 GGCCACACTAAATTAGTTTTAGCTTAGAGTTTTATC
1 GGCCACACTAAATTAGTTTTAGCTTAGAGTTTTATC
3095320 TAGTTTTCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (36 bp):
GGCCACACTAAATTAGTTTTAGCTTAGAGTTTTATC
Found at i:3096773 original size:25 final size:25
Alignment explanation
Indices: 3096739--3096788 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
3096729 ACTTAGTGCC
*
3096739 CAAGCGTGTTTTTGGAGGTATGTTT
1 CAAGCGTGTTTTTGGAGGGATGTTT
*
3096764 CAAGTGTGTTTTTGGAGGGATGTTT
1 CAAGCGTGTTTTTGGAGGGATGTTT
3096789 AGCCTATTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.16, C:0.06, G:0.34, T:0.44
Consensus pattern (25 bp):
CAAGCGTGTTTTTGGAGGGATGTTT
Found at i:3099537 original size:51 final size:52
Alignment explanation
Indices: 3099362--3099539 Score: 215
Period size: 52 Copynumber: 3.5 Consensus size: 52
3099352 ATTAGTGACT
* * * *
3099362 CAAGTGTGGTACTATGTGACGGACAC-TT-TG-AGAATAGATAAC-TTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA-AGATAGCTTTGGTCA
3099411 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
3099463 CAAGTGTGGTACTGTGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGG-CTT
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
* *
3099514 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
3099540 CGGGTATCCG
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 24 0.21
50 3 0.03
51 43 0.38
52 44 0.39
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:3104388 original size:25 final size:24
Alignment explanation
Indices: 3104360--3104408 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
3104350 ATAGTTGGTT
3104360 TGATTGATCTATGATCGGCATTCNC
1 TGATTGATCTATGATCGGCATTC-C
3104385 TGATTGATCTATGATCGGCATTCC
1 TGATTGATCTATGATCGGCATTCC
3104409 ACTATTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.37
Consensus pattern (24 bp):
TGATTGATCTATGATCGGCATTCC
Found at i:3106724 original size:52 final size:51
Alignment explanation
Indices: 3106646--3106774 Score: 172
Period size: 52 Copynumber: 2.5 Consensus size: 51
3106636 ATTAGTGACT
*
3106646 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTTG-TCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAG-AAGATAGCTTTGGCT-A
* *
3106698 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGGCTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAGATAGCTTTGGCTA
* *
3106749 CAAG-GCTGGTACTATATGCAGGCCAC
1 CAAGTG-TGGTACTATGTGAAGGCCAC
3106775 CGGGTATCCG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
50 1 0.01
51 34 0.49
52 35 0.50
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAGATAGCTTTGGCTA
Found at i:3106762 original size:51 final size:52
Alignment explanation
Indices: 3106646--3106774 Score: 174
Period size: 51 Copynumber: 2.5 Consensus size: 52
3106636 ATTAGTGACT
*
3106646 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTTGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
* *
3106698 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGG-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTC-A
* *
3106749 CAAG-GCTGGTACTATATGCAGGCCAC
1 CAAGTG-TGGTACTATGTGAAGGCCAC
3106775 CGGGTATCCG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
50 2 0.03
51 34 0.49
52 34 0.49
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
Found at i:3113391 original size:45 final size:45
Alignment explanation
Indices: 3113316--3113665 Score: 409
Period size: 45 Copynumber: 7.8 Consensus size: 45
3113306 AAGGTTGAAG
* * * * * *
3113316 GATGCCATAGTGTCTTTCA-ATCATGATCTTATTCGTCT-GATTCAT
1 GATGCCATAGCGTCTTTCAGCT-ATGGTCTTACTCGT-TAGAATCGT
* * *
3113361 GATGCCATAGCATCTTTCAGCTATAGTCTTACTTGTTAGAATCGT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTAGAATCGT
*
3113406 GATGCCATAGCGTCTTTCAACTATGGTCTTACTCGTTAGAATCGT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTAGAATCGT
* *
3113451 GATGCTATAGTGTCTTTCAGCTATGGTCTTACTCGTTAGAATCGT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTAGAATCGT
* * *
3113496 GATGCCATAACGTCTTTTAGCTATGGTCTTACTCATTA-AACTCGT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTAGAA-TCGT
** * * *
3113541 GATGCCATAATGTATTTCAGCTATGGTCTTACTCGTTAAAATCAT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTAGAATCGT
* * * *
3113586 GATGCCATAACGTCTTTCAGCTATGATCTTACTTGTTAAAATCGT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTAGAATCGT
* * *
3113631 GATGCCATAACGTTTTTCAGCTATGGTTTTACTCG
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCG
3113666 GTTCTAGTAT
Statistics
Matches: 266, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
44 3 0.01
45 260 0.98
46 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (45 bp):
GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTAGAATCGT
Found at i:3113685 original size:45 final size:45
Alignment explanation
Indices: 3113357--3113706 Score: 387
Period size: 45 Copynumber: 7.8 Consensus size: 45
3113347 TTCGTCTGAT
* * * * *
3113357 TCATGATGCCATAGCATCTTTCAGCTATAGTCTTACTTGTTAGAA
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAA
* * * *
3113402 TCGTGATGCCATAGCGTCTTTCAACTATGGTCTTACTCGTTAGAA
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAA
* * ** *
3113447 TCGTGATGCTATAGTGTCTTTCAGCTATGGTCTTACTCGTTAGAA
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAA
* * * *
3113492 TCGTGATGCCATAACGTCTTTTAGCTATGGTCTTACTCATTAAAC
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAA
* * *
3113537 TCGTGATGCCATAATGTATTTCAGCTATGGTCTTACTCGTTAAAA
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAA
* *
3113582 TCATGATGCCATAACGTCTTTCAGCTATGATCTTACTTGTTAAAA
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAA
* * * ** *
3113627 TCGTGATGCCATAACGTTTTTCAGCTATGGTTTTACTCGGTTCTAG
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTC-GTTAAAA
* ** *
3113673 T-ATGATGTCATAATTTCTTTCAACTATGGTCTTA
1 TCATGATGCCATAACGTCTTTCAGCTATGGTCTTA
3113707 TTCAATTCCG
Statistics
Matches: 264, Mismatches: 40, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 259 0.98
46 5 0.02
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (45 bp):
TCATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAA
Found at i:3113730 original size:135 final size:135
Alignment explanation
Indices: 3113360--3113751 Score: 360
Period size: 135 Copynumber: 2.9 Consensus size: 135
3113350 GTCTGATTCA
* * * * ** * ** *
3113360 TGATGCCATAGCATCTTTCAGCTATAGTCTTACTTGTTAGAA-TCGTGATGCCATAGCGTCTTTC
1 TGATGCCATAACGTCTTTTAGCTATGGTCTTACTCATTA-AACTCATGATGCCATAATGTATTTC
* * * * * **
3113424 AACTATGGTCTTACTCGTTAGAATCGTGATGCTATAGTGTCTTTCAGCTATGGTCTTACTCGTTA
65 AACTATGGTCTTACTCATTAAAATCATAATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTA
*
3113489 GAATCG
130 AAATCG
*
3113495 TGATGCCATAACGTCTTTTAGCTATGGTCTTACTCATTAAACTCGTGATGCCATAATGTATTTCA
1 TGATGCCATAACGTCTTTTAGCTATGGTCTTACTCATTAAACTCATGATGCCATAATGTATTTCA
* * * * *
3113560 GCTATGGTCTTACTCGTTAAAATCATGATGCCATAACGTCTTTCAGCTATGATCTTACTTGTTAA
66 ACTATGGTCTTACTCATTAAAATCATAATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAA
3113625 AATCG
131 AATCG
* * ** * * * *
3113630 TGATGCCATAACGT-TTTTCAGCTATGGTTTTACTCGGTTCTAGT-ATGATGTCATAATTTCTTT
1 TGATGCCATAACGTCTTTT-AGCTATGGTCTTACTC-ATTAAACTCATGATGCCATAATGTATTT
* **** * * *
3113693 CAACTATGGTCTTATTCAATTCCGGT-ATAATGTCATAATGTCTTTCAACTATGGTCTTA
64 CAACTATGGTCTTACTC-ATTAAAATCATAATGCCATAACGTCTTTCAGCTATGGTCTTA
3113752 TCCGTTTCAT
Statistics
Matches: 214, Mismatches: 39, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
134 6 0.03
135 201 0.94
136 7 0.03
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (135 bp):
TGATGCCATAACGTCTTTTAGCTATGGTCTTACTCATTAAACTCATGATGCCATAATGTATTTCA
ACTATGGTCTTACTCATTAAAATCATAATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAA
AATCG
Found at i:3114351 original size:17 final size:17
Alignment explanation
Indices: 3114329--3114368 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
3114319 CCTCAAGTCC
3114329 TAACATTTTTA-TCACTT
1 TAACATTTTTAGTC-CTT
3114346 TAACA-TTTTAGTCCTT
1 TAACATTTTTAGTCCTT
3114362 TAACATT
1 TAACATT
3114369 AAAATTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.30, C:0.17, G:0.03, T:0.50
Consensus pattern (17 bp):
TAACATTTTTAGTCCTT
Found at i:3119715 original size:14 final size:14
Alignment explanation
Indices: 3119677--3119719 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
3119667 TAAAATGTAC
3119677 AATATAATTAAA-T
1 AATATAATTAAATT
3119690 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
3119705 AA-ATAATTTAATT
1 AATATAATTAAATT
3119718 AA
1 AA
3119720 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:3123388 original size:5 final size:5
Alignment explanation
Indices: 3123378--3123410 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
3123368 CTTTCAGTCT
3123378 TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTT
1 TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTT
3123411 GTTTTGATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAC
Found at i:3124905 original size:21 final size:21
Alignment explanation
Indices: 3124880--3124946 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
3124870 AATTCACATG
3124880 TATATACATACGTTCTTATAA
1 TATATACATACGTTCTTATAA
* ** *
3124901 TATAT--ATACAATTCACAT-G
1 TATATACATAC-GTTCTTATAA
*
3124920 TATATACATACGTTTTTATAA
1 TATATACATACGTTCTTATAA
3124941 TATATA
1 TATATA
3124947 TACATATACA
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
19 9 0.27
20 9 0.27
21 15 0.45
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.43
Consensus pattern (21 bp):
TATATACATACGTTCTTATAA
Found at i:3124908 original size:23 final size:23
Alignment explanation
Indices: 3124880--3124952 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 23
3124870 AATTCACATG
3124880 TATATACATACGTTCTTATAATA
1 TATATACATACGTTCTTATAATA
* *
3124903 TATATACA-A--TTC--A-CATG
1 TATATACATACGTTCTTATAATA
*
3124920 TATATACATACGTTTTTATAATA
1 TATATACATACGTTCTTATAATA
3124943 TATATACATA
1 TATATACATA
3124953 TACATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
17 10 0.26
18 2 0.05
20 5 0.13
22 2 0.05
23 20 0.51
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.42
Consensus pattern (23 bp):
TATATACATACGTTCTTATAATA
Found at i:3124909 original size:19 final size:19
Alignment explanation
Indices: 3124881--3124949 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
3124871 ATTCACATGT
3124881 ATATACATACGTTCTTATA
1 ATATACATACGTTCTTATA
* * ** *
3124900 ATATATATACAATTCACATGT
1 ATATACATAC-GTTCTTAT-A
*
3124921 ATATACATACGTTTTTATA
1 ATATACATACGTTCTTATA
*
3124940 ATATATATAC
1 ATATACATAC
3124950 ATATACATAT
Statistics
Matches: 36, Mismatches: 12, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
19 18 0.50
20 9 0.25
21 9 0.25
ACGTcount: A:0.41, C:0.13, G:0.04, T:0.42
Consensus pattern (19 bp):
ATATACATACGTTCTTATA
Found at i:3124914 original size:40 final size:40
Alignment explanation
Indices: 3124870--3124950 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
3124860 TAATTTTTAA
3124870 AATTCACATGTATATACATACGTTCTTATAATATATATAC
1 AATTCACATGTATATACATACGTTCTTATAATATATATAC
*
3124910 AATTCACATGTATATACATACGTTTTTATAATATATATAC
1 AATTCACATGTATATACATACGTTCTTATAATATATATAC
3124950 A
1 A
3124951 TATACATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (40 bp):
AATTCACATGTATATACATACGTTCTTATAATATATATAC
Found at i:3124969 original size:30 final size:28
Alignment explanation
Indices: 3124933--3124991 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
3124923 ATACATACGT
*
3124933 TTTTATAATATATATACATATACATATATA
1 TTTTATAA-AT-TATACATATACACATATA
*
3124963 TTTTATAACTTATACATATACACATATA
1 TTTTATAAATTATACATATACACATATA
3124991 T
1 T
3124992 ATGTCTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 18 0.67
29 1 0.04
30 8 0.30
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (28 bp):
TTTTATAAATTATACATATACACATATA
Found at i:3125283 original size:4 final size:4
Alignment explanation
Indices: 3125274--3125301 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
3125264 TTTTATTCAT
3125274 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
3125302 CGTTTCCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:3137056 original size:49 final size:49
Alignment explanation
Indices: 3137003--3137148 Score: 274
Period size: 49 Copynumber: 3.0 Consensus size: 49
3136993 TTAGGATTCT
*
3137003 ATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
3137052 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
3137101 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
3137149 TGTTTCCTCT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 95 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:3137464 original size:51 final size:51
Alignment explanation
Indices: 3137388--3137487 Score: 191
Period size: 51 Copynumber: 2.0 Consensus size: 51
3137378 TAATCACTAT
*
3137388 CATAATTTGTGCTATTTATGCTAAAAGGGCTAGTTGAATCATGGAAACTTA
1 CATAATTTGTGCTATTCATGCTAAAAGGGCTAGTTGAATCATGGAAACTTA
3137439 CATAATTTGTGCTATTCATGCTAAAAGGGCTAGTTGAATCATGGAAACT
1 CATAATTTGTGCTATTCATGCTAAAAGGGCTAGTTGAATCATGGAAACT
3137488 ATGAAATAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (51 bp):
CATAATTTGTGCTATTCATGCTAAAAGGGCTAGTTGAATCATGGAAACTTA
Found at i:3138341 original size:43 final size:43
Alignment explanation
Indices: 3138238--3138380 Score: 146
Period size: 43 Copynumber: 3.3 Consensus size: 43
3138228 GTTTATGTGA
* * * * *
3138238 AAAAACGCCGCTATAGAGCATGA-CTTGTAACGGCGCTTTTAT-
1 AAAAACGCTGCTAAAGAACATGACCTT-TAGCAGCGCTTTTATC
*
3138280 AAAAACGCTACTAAAGAACATGACCTTTAGCAGCGCTTTTATC
1 AAAAACGCTGCTAAAGAACATGACCTTTAGCAGCGCTTTTATC
* * * **
3138323 AGAAACGCTGCTAAAGAACATGATCTTTAGCGGTACTTTTATC
1 AAAAACGCTGCTAAAGAACATGACCTTTAGCAGCGCTTTTATC
* *
3138366 ACAAACGCCGCTAAA
1 AAAAACGCTGCTAAA
3138381 AGTACCGTTC
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 32 0.38
43 53 0.62
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (43 bp):
AAAAACGCTGCTAAAGAACATGACCTTTAGCAGCGCTTTTATC
Found at i:3138393 original size:43 final size:43
Alignment explanation
Indices: 3138273--3138398 Score: 112
Period size: 43 Copynumber: 3.0 Consensus size: 43
3138263 TGTAACGGCG
* ** * * * **
3138273 CTTTTAT-AAAAACGCTACTAAAGAACATGACCTTTAGCAGCG
1 CTTTTATCACAAACGCCGCTAAAGAACACGATCTTTAGCGGTA
* * *
3138315 CTTTTATCAGAAACGCTGCTAAAGAACATGATCTTTAGCGGTA
1 CTTTTATCACAAACGCCGCTAAAGAACACGATCTTTAGCGGTA
* *
3138358 CTTTTATCACAAACGCCGCTAAAAGTAC-CGTTCTTTAGCGG
1 CTTTTATCACAAACGCCGCT-AAAGAACACGATCTTTAGCGG
3138399 CATTTAATGA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
42 7 0.10
43 58 0.82
44 6 0.08
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (43 bp):
CTTTTATCACAAACGCCGCTAAAGAACACGATCTTTAGCGGTA
Found at i:3147726 original size:21 final size:22
Alignment explanation
Indices: 3147687--3147730 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
3147677 AGGTGATTAT
3147687 TTTTAGGGGGAAAAATTAGGGA
1 TTTTAGGGGGAAAAATTAGGGA
*
3147709 TTTTAGGGGG-AAATTTAGGGA
1 TTTTAGGGGGAAAAATTAGGGA
3147730 T
1 T
3147731 AAAAAGGCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (22 bp):
TTTTAGGGGGAAAAATTAGGGA
Found at i:3148245 original size:4 final size:4
Alignment explanation
Indices: 3148236--3148264 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
3148226 ATCTGTTACT
3148236 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
3148265 CAATGTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:3148604 original size:21 final size:21
Alignment explanation
Indices: 3148580--3148623 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
3148570 ATATACCAGA
* *
3148580 AACCCTAAACCTCTAATCCTT
1 AACCCTAAACCCCTAAACCTT
* *
3148601 AACCTTTAACCCCTAAACCTT
1 AACCCTAAACCCCTAAACCTT
3148622 AA
1 AA
3148624 ACCCCAACCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.27
Consensus pattern (21 bp):
AACCCTAAACCCCTAAACCTT
Found at i:3148621 original size:15 final size:15
Alignment explanation
Indices: 3148582--3148628 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
3148572 ATACCAGAAA
*
3148582 CCCTAAACCTCTAA-
1 CCCTAAACCTTTAAC
* *
3148596 TCCTTAACCTTTAAC
1 CCCTAAACCTTTAAC
*
3148611 CCCTAAACCTTAAAC
1 CCCTAAACCTTTAAC
3148626 CCC
1 CCC
3148629 AACCCTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.32, C:0.43, G:0.00, T:0.26
Consensus pattern (15 bp):
CCCTAAACCTTTAAC
Found at i:3148638 original size:14 final size:15
Alignment explanation
Indices: 3148601--3148638 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
3148591 TCTAATCCTT
*
3148601 AACCTTTAACCCCTA
1 AACCTTAAACCCCTA
3148616 AACCTTAAACCCC-A
1 AACCTTAAACCCCTA
*
3148630 ACCCTTAAA
1 AACCTTAAA
3148639 TCATAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCTTAAACCCCTA
Found at i:3149185 original size:40 final size:40
Alignment explanation
Indices: 3149128--3149378 Score: 227
Period size: 40 Copynumber: 6.3 Consensus size: 40
3149118 TAACTTTTTT
* * *
3149128 GCGGCG-TTTTTCAAAAGCGCCGCTAGTGGTCGACCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
* ** *
3149167 GCGGCGTTTTTTGAAAAGCGCCTATAATGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
* * * *
3149207 GCGGCGATTTTAAAAAAGCACCGCTAATGGTCGACCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
* * * * * *
3149247 GCAGCGTTTTTTGAACAGTGCCACTAATGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
* * * * *
3149287 GTGGCATTTTTCAAAAAGCACCGCTAATGCTCG-TCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
** * * *
3149326 GCGGCACTTTTCAAAAAGCGCCCCTAATGCTCGACTTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
* *
3149366 ACTGCGTTTTTTA
1 GCGGCGTTTTTTA
3149379 TCCAAACGCT
Statistics
Matches: 166, Mismatches: 44, Indels: 3
0.78 0.21 0.01
Matches are distributed among these distances:
39 41 0.25
40 125 0.75
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (40 bp):
GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
Found at i:3149260 original size:80 final size:79
Alignment explanation
Indices: 3149140--3149359 Score: 264
Period size: 80 Copynumber: 2.8 Consensus size: 79
3149130 GGCGTTTTTC
* *
3149140 AAAAGCGCCGCTAGTGGTCGACCTATAGCGGCGTTTTTTGAAAAGCGCCTATAATGCTCGATCTA
1 AAAAGCACCGCTAATGGTCGACCTATAGCGGCGTTTTTTGAAAAGCGCC-ATAATGCTCGATCTA
3149205 TAGCGGCGA-TTTTAA
65 TAGCGGC-ATTTTTAA
* * *
3149220 AAAAGCACCGCTAATGGTCGACCTATAGCAGCGTTTTTTGAACAGTGCCACTAATGCTCGATCTA
1 AAAAGCACCGCTAATGGTCGACCTATAGCGGCGTTTTTTGAAAAGCGCCA-TAATGCTCGATCTA
* *
3149285 TAGTGGCATTTTTCA
65 TAGCGGCATTTTTAA
* * ** ** *
3149300 AAAAGCACCGCTAATGCTCG-TCTATAGCGGCACTTTTCAAAAAGCGCCCCTAATGCTCGA
1 AAAAGCACCGCTAATGGTCGACCTATAGCGGCGTTTTTTGAAAAGCG-CCATAATGCTCGA
3149360 CTTATAACTG
Statistics
Matches: 120, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
79 30 0.25
80 90 0.75
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (79 bp):
AAAAGCACCGCTAATGGTCGACCTATAGCGGCGTTTTTTGAAAAGCGCCATAATGCTCGATCTAT
AGCGGCATTTTTAA
Found at i:3149736 original size:138 final size:139
Alignment explanation
Indices: 3149488--3150179 Score: 977
Period size: 138 Copynumber: 5.0 Consensus size: 139
3149478 GGGTCGTTAC
* *
3149488 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATTAATA
1 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * * *
3149553 TAAATAGTTATATTAA-TAGATTTTGATCAAAATATAAAAGACATGGAAATTAATACTATTTTGG
66 TAAACAGTTATATTAATTAAATTCTGATCAAAATATAAAAGACATGGAAATTAATACTCTTTTGG
*
3149617 AAATAATAT
131 AAAGAATAT
3149626 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * *
3149691 AAAACAGTTATATTAATTAAATTCAG-TCAAAATATAAAAGACATGGAAATTAATAATCTTTTGG
66 TAAACAGTTATATTAATTAAATTCTGATCAAAATATAAAAGACATGGAAATTAATACTCTTTTGG
*
3149755 AAAGAATTT
131 AAAGAATAT
* * *
3149764 AATTAATATAT-TA-TTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTACTAATA
1 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * * * * * *
3149827 CAAACAGTTATATTCATTAATTTC-GTTCAAAATATAAAAGACATAGAAATTATTATTCTTTTGG
66 TAAACAGTTATATTAATTAAATTCTGATCAAAATATAAAAGACATGGAAATTAATACTCTTTTGG
3149891 AAAGAATAT
131 AAAGAATAT
* * * *
3149900 AATTAAAATATTAATTTCATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATTAATA
1 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * * *
3149965 TAAATAGTTATATTAA-TAGATTTTGATCAAAATATAAAAGACATGGAAATTAATACTATTTTGG
66 TAAACAGTTATATTAATTAAATTCTGATCAAAATATAAAAGACATGGAAATTAATACTCTTTTGG
*
3150029 AAATAATAT
131 AAAGAATAT
*
3150038 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTAGC-AGATTTATTAAT
1 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGA-ATTTATTAAT
* * * * * * *
3150102 ATAAACAGCTACATTAATTAATTTC-GGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTA
65 ATAAACAGTTATATTAATTAAATTCTGATCAAAATATAAAAGACATGGAAATTAATACTCTTTTG
3150166 GAAAGAATAT
130 GAAAGAATAT
3150176 AATT
1 AATT
3150180 TATTTTTCTA
Statistics
Matches: 492, Mismatches: 55, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
135 1 0.00
136 123 0.25
137 7 0.01
138 351 0.71
139 10 0.02
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (139 bp):
AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
TAAACAGTTATATTAATTAAATTCTGATCAAAATATAAAAGACATGGAAATTAATACTCTTTTGG
AAAGAATAT
Found at i:3149997 original size:274 final size:274
Alignment explanation
Indices: 3149488--3150179 Score: 1005
Period size: 274 Copynumber: 2.5 Consensus size: 274
3149478 GGGTCGTTAC
*
3149488 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * * * *
3149553 TAAATAGTTATATTAATAGATTTTGATCAAAATATAAAAGACATGGAAATTAATACTATTTTGGA
66 TAAACAGTTATATTATTA-ATTTCGATCAAAATATAAAAGACAT-GAAATTAATATTCTTTTGGA
* * * *
3149618 AATAATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATT
129 AAGAATATAATTAAAATATGAATTTCATTCATACAAAATATTAATTGTATATATTTTACAGAATT
3149683 TATTAATAAAAACAGTTATATTAATTAAATTCAGTCAAAATATAAAAGACATGGAAATTAATAAT
194 TATTAATAAAAACAGTTATATTAATTAAATTCAGTCAAAATATAAAAGACATGGAAATTAATAAT
* *
3149748 CTTTTGGAAAGAATTT
259 ATTTTGGAAAGAATAT
* *
3149764 AATTAATATAT-TA-TTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTACTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * *
3149827 CAAACAGTTATATTCATTAATTTCGTTCAAAATATAAAAGACATAGAAATTATTATTCTTTTGGA
66 TAAACAGTTATATT-ATTAATTTCGATCAAAATATAAAAGACAT-GAAATTAATATTCTTTTGGA
*
3149892 AAGAATATAATTAAAATATTAATTTCATTCATACAAAATATTAATTGTATATATTTTACAGAATT
129 AAGAATATAATTAAAATATGAATTTCATTCATACAAAATATTAATTGTATATATTTTACAGAATT
* * * ** *
3149957 TATTAATATAAATAGTTATATTAA-TAGATTTTGATCAAAATATAAAAGACATGGAAATTAATAC
194 TATTAATAAAAACAGTTATATTAATTAAATTCAG-TCAAAATATAAAAGACATGGAAATTAATAA
*
3150021 TATTTTGGAAATAATAT
258 TATTTTGGAAAGAATAT
* *
3150038 AATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTAGC-AGATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGA-ATTTATTAAT
* * * *
3150102 ATAAACAGCTACATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTAG
65 ATAAACAGTTATATT-ATTAATTTCGATCAAAATATAAAAGACATG-AAATTAATATTCTTTTGG
3150167 AAAGAATATAATT
128 AAAGAATATAATT
3150180 TATTTTTCTA
Statistics
Matches: 373, Mismatches: 37, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
273 6 0.02
274 235 0.63
275 7 0.02
276 125 0.34
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (274 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
TAAACAGTTATATTATTAATTTCGATCAAAATATAAAAGACATGAAATTAATATTCTTTTGGAAA
GAATATAATTAAAATATGAATTTCATTCATACAAAATATTAATTGTATATATTTTACAGAATTTA
TTAATAAAAACAGTTATATTAATTAAATTCAGTCAAAATATAAAAGACATGGAAATTAATAATAT
TTTGGAAAGAATAT
Found at i:3156961 original size:138 final size:137
Alignment explanation
Indices: 3156681--3157096 Score: 583
Period size: 138 Copynumber: 3.0 Consensus size: 137
3156671 ACATAGATAA
*
3156681 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATGTTACCAAATTTATT-A-A
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * *
3156744 T-AATAGTTATATTAATTAATTT-TAGTCAAAATATAAAAGACATGGAAATTATTAATCTTTTGG
66 TAAATAGTTATATTAATTAATTTCGA-TCAAAATATAAAA-ACATGGAAATTAATATTCTTTTGG
*
3156807 AAAGAATAT
129 AAATAATAT
* * *
3156816 AACTAATATATTAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
*
3156881 TAAATAGTTATATTAA-TATATTTCGATCAAAATATAAACAACATGGAAATTAATATTATTTTGG
66 TAAATAGTTATATTAATTA-ATTTCGATCAAAATATAAA-AACATGGAAATTAATATTCTTTTGG
3156945 AAATAATAT
129 AAATAATAT
*
3156954 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * * ** *
3157019 TAGACAGTTATATTAATTAATTTCGATCAAAATATTAAAAAATATATAAATTAATATTCTTTTAG
66 TAAATAGTTATATTAATTAATTTCGATCAAAATA-T-AAAAACATGGAAATTAATATTCTTTTGG
3157084 -AATGAATAT
129 AAAT-AATAT
3157093 AATT
1 AATT
3157097 TATTTTTCTA
Statistics
Matches: 251, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
135 57 0.23
136 1 0.00
137 4 0.02
138 152 0.61
139 34 0.14
140 3 0.01
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.42
Consensus pattern (137 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAATAGTTATATTAATTAATTTCGATCAAAATATAAAAACATGGAAATTAATATTCTTTTGGAA
ATAATAT
Found at i:3160776 original size:9 final size:9
Alignment explanation
Indices: 3160762--3160804 Score: 86
Period size: 9 Copynumber: 4.8 Consensus size: 9
3160752 AAATATTTTG
3160762 CATTTTATT
1 CATTTTATT
3160771 CATTTTATT
1 CATTTTATT
3160780 CATTTTATT
1 CATTTTATT
3160789 CATTTTATT
1 CATTTTATT
3160798 CATTTTA
1 CATTTTA
3160805 GTCTCTATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (9 bp):
CATTTTATT
Found at i:3162517 original size:50 final size:50
Alignment explanation
Indices: 3162437--3162628 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
3162427 ATTTGGGTAA
* *
3162437 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
3162487 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
3162537 AGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
3162587 AGAACTCCCATGTAAAACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
3162629 GTGCATGAAA
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 2 0.02
50 120 0.97
51 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:3166553 original size:21 final size:20
Alignment explanation
Indices: 3166508--3166554 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
3166498 ATGTTATTCG
*
3166508 TATTTTAAAAACCAAAAAAA
1 TATTTTAAAAAACAAAAAAA
* *
3166528 AATTTTAAAATAACAAATAAA
1 TATTTTAAAA-AACAAAAAAA
3166549 TATTTT
1 TATTTT
3166555 TTAAGGTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (20 bp):
TATTTTAAAAAACAAAAAAA
Found at i:3174142 original size:4 final size:4
Alignment explanation
Indices: 3174133--3174163 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
3174123 CTGTTAAATA
3174133 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
3174164 AGTTTATTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:3179556 original size:29 final size:27
Alignment explanation
Indices: 3179514--3179576 Score: 83
Period size: 29 Copynumber: 2.3 Consensus size: 27
3179504 TTTATTTATA
*
3179514 TTTTTTAAATGTTATT-TTATCAATAAT
1 TTTTTTAAATGTTATTATT-TAAATAAT
3179541 TTTATTTAATATGTTATTATTTAAATAAT
1 TTT-TTTAA-ATGTTATTATTTAAATAAT
3179570 TTTTTTA
1 TTTTTTA
3179577 TAAAACACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.09
28 9 0.28
29 18 0.56
30 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTTTAAATGTTATTATTTAAATAAT
Found at i:3180712 original size:19 final size:19
Alignment explanation
Indices: 3180666--3180718 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
3180656 TTGAAATCAA
**
3180666 ATATATTTGTAATATTATAT
1 ATATATTTAAAAT-TTATAT
3180686 ATGATATTATAAAATTTATAT
1 AT-ATATT-TAAAATTTATAT
3180707 AT-TATTTAAAAT
1 ATATATTTAAAAT
3180719 GCCTTTCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 6 0.21
19 4 0.14
20 2 0.07
21 13 0.45
22 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (19 bp):
ATATATTTAAAATTTATAT
Found at i:3198434 original size:18 final size:18
Alignment explanation
Indices: 3198411--3198455 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
3198401 TTCTAAAAAC
3198411 CACAAGAAAGAAATCTTG
1 CACAAGAAAGAAATCTTG
3198429 CACAAGAAAGAAATCTTG
1 CACAAGAAAGAAATCTTG
3198447 CACAAGAAA
1 CACAAGAAA
3198456 CAAACTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.53, C:0.18, G:0.16, T:0.13
Consensus pattern (18 bp):
CACAAGAAAGAAATCTTG
Found at i:3213596 original size:5 final size:5
Alignment explanation
Indices: 3213586--3213657 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
3213576 TGTTAAAAAA
* *
3213586 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
3213632 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
3213658 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:3213639 original size:19 final size:19
Alignment explanation
Indices: 3213615--3213657 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
3213605 ATTATGTTTT
3213615 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
3213634 TATATTATATTATATTATA
1 TATATTATATTATATTATA
3213653 TATAT
1 TATAT
3213658 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:3213690 original size:18 final size:19
Alignment explanation
Indices: 3213662--3213701 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
3213652 ATATATACAT
*
3213662 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
3213681 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
3213699 AAA
1 AAA
3213702 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:3214331 original size:29 final size:30
Alignment explanation
Indices: 3214272--3214329 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
3214262 TCCGAGCCTT
*
3214272 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
3214302 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
3214330 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:3214559 original size:13 final size:13
Alignment explanation
Indices: 3214541--3214572 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
3214531 TTTCCAGCAA
3214541 TTATGAATTTATT
1 TTATGAATTTATT
3214554 TTATGAATTTATT
1 TTATGAATTTATT
*
3214567 TGATGA
1 TTATGA
3214573 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:3214780 original size:50 final size:50
Alignment explanation
Indices: 3214667--3214908 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
3214657 ATTTGGGTAA
* * *
3214667 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
3214723 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3214773 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3214823 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
3214873 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
3214909 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:3214856 original size:100 final size:103
Alignment explanation
Indices: 3214667--3214916 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
3214657 ATTTGGGTAA
3214667 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
3214732 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
3214773 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
3214835 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
3214873 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
3214917 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:3222514 original size:131 final size:130
Alignment explanation
Indices: 3222211--3222626 Score: 579
Period size: 131 Copynumber: 3.2 Consensus size: 130
3222201 TGGATTGAAG
*
3222211 AAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCATAATTAAACCACCAGTCCTATCTCC
1 AAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCA-GATTAAACCACCAGTCCTATCTCC
* * *
3222276 CTGAGCAGTAGTGGAGTAGGTTGAAGAGTGTAGATCCCGTCTCCCTAAGCAATAGTGGAGCAAAT
65 CTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGA-CCCGTCTCCCTAAGCAATAGTGGAGCAGAT
3222341 CA
129 CA
* *
3222343 AATG-CGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTCAAACCACCAGTTCTATCTC
1 AA-GACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATT-AAACCACCAGTCCTATCTC
* * *
3222407 CTTGAGCAGCAGTGGAGTTGGTTGAAGAATGTAGACCCGTCTCCCTAAGTAATAGTGGAGCAGAT
64 CCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGACCCGTCTCCCTAAGCAATAGTGGAGCAGAT
3222472 CA
129 CA
* * *
3222474 AAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAACCATCAGTCCTATCTCCC
1 AAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTAAACCACCAGTCCTATCTCCC
* * * * *
3222539 TGAGCAGCAATAGAGTAGGTTGAAGAATGTAGA-TCGTTTCTCCCTGAGCAGTAGTGGAGCAGAT
66 TGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGACCCG--TCTCCCTAAGCAATAGTGGAGCAGAT
3222603 CGA
129 C-A
*
3222606 AA-ACAGTGAATTTTA-CTTCCC
1 AAGACAGTGAATCTTATCTTCCC
3222627 TGGTGTTGCG
Statistics
Matches: 256, Mismatches: 22, Indels: 14
0.88 0.08 0.05
Matches are distributed among these distances:
129 2 0.01
130 54 0.21
131 110 0.43
132 89 0.35
133 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (130 bp):
AAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTAAACCACCAGTCCTATCTCCC
TGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGACCCGTCTCCCTAAGCAATAGTGGAGCAGATCA
Found at i:3222667 original size:21 final size:21
Alignment explanation
Indices: 3222637--3222678 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
3222627 TGGTGTTGCG
3222637 GTGGAATGGATTAAAGCTGAA
1 GTGGAATGGATTAAAGCTGAA
*
3222658 GTGGAGTGGATTAAAGCTGAA
1 GTGGAATGGATTAAAGCTGAA
3222679 TACAGCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.36, T:0.24
Consensus pattern (21 bp):
GTGGAATGGATTAAAGCTGAA
Found at i:3224418 original size:12 final size:12
Alignment explanation
Indices: 3224403--3224431 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
3224393 TTACTGTTTT
3224403 ATTTAATATTTC
1 ATTTAATATTTC
3224415 ATTTAATATTTC
1 ATTTAATATTTC
3224427 ATTTA
1 ATTTA
3224432 TTTATTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTAATATTTC
Found at i:3224447 original size:21 final size:22
Alignment explanation
Indices: 3224409--3224452 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
3224399 TTTTATTTAA
3224409 TATTTCATTTAATATTTC-ATT
1 TATTTCATTTAATATTTCGATT
*
3224430 TATTT-ATTTACTACTTTCGATT
1 TATTTCATTTAATA-TTTCGATT
3224452 T
1 T
3224453 TAAATCTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.25, C:0.11, G:0.02, T:0.61
Consensus pattern (22 bp):
TATTTCATTTAATATTTCGATT
Found at i:3228907 original size:15 final size:16
Alignment explanation
Indices: 3228873--3228907 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
3228863 AGAGGAAATT
3228873 GGAAAGAAAGGAAAAA
1 GGAAAGAAAGGAAAAA
3228889 -GAAAGAAA-GAAAAA
1 GGAAAGAAAGGAAAAA
3228903 GGAAA
1 GGAAA
3228908 AAATAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
GGAAAGAAAGGAAAAA
Found at i:3237456 original size:17 final size:17
Alignment explanation
Indices: 3237434--3237483 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
3237424 TCTTCAACAG
3237434 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
*
3237451 ACAGAT--TAAA--CAA
1 ACAGATGCAAAATCCAA
3237464 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
3237481 ACA
1 ACA
3237484 AATTCTTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 9 0.33
15 6 0.22
17 12 0.44
ACGTcount: A:0.56, C:0.22, G:0.10, T:0.12
Consensus pattern (17 bp):
ACAGATGCAAAATCCAA
Found at i:3239551 original size:23 final size:23
Alignment explanation
Indices: 3239525--3239569 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
3239515 TACAATCAAC
3239525 ATTAGGCAT-ATAAACAAGCCATA
1 ATTAGGCATCA-AAACAAGCCATA
3239548 ATTAGGCATCCAAAACAAGCCA
1 ATTAGGCAT-CAAAACAAGCCA
3239570 AAATCAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.45
24 10 0.50
25 1 0.05
ACGTcount: A:0.47, C:0.22, G:0.13, T:0.18
Consensus pattern (23 bp):
ATTAGGCATCAAAACAAGCCATA
Found at i:3240684 original size:25 final size:24
Alignment explanation
Indices: 3240656--3240708 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
3240646 TTGAATAACA
*
3240656 GTAAGCTCATACGAGCTGAGTATTG
1 GTAAGCTCATACGAGCTGA-AATTG
*
3240681 GTAAGCTCATACGTGCTGAAATTG
1 GTAAGCTCATACGAGCTGAAATTG
3240705 GTAA
1 GTAA
3240709 CCCTAATGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (24 bp):
GTAAGCTCATACGAGCTGAAATTG
Found at i:3241162 original size:13 final size:13
Alignment explanation
Indices: 3241144--3241169 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3241134 GTCCATATAT
3241144 TTCACAAATTTAC
1 TTCACAAATTTAC
3241157 TTCACAAATTTAC
1 TTCACAAATTTAC
3241170 AAATTTCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
TTCACAAATTTAC
Found at i:3248494 original size:43 final size:42
Alignment explanation
Indices: 3248393--3248520 Score: 105
Period size: 43 Copynumber: 3.0 Consensus size: 42
3248383 TTACTGAGAG
* * * * *
3248393 GTGATAACATGTAAAACCATGTTTGGAACATTGGCATCGTTAT
1 GTGATAACATGTAAGACCATGTCTGGGACAATGGCATTG-TAT
* ** * * *
3248436 ATGATTTCGTATAAGACCCTGTCTGGGACAATGGCATTGATAT
1 GTGATAACATGTAAGACCATGTCTGGGACAATGGCATTG-TAT
* * *
3248479 GTGATAACATGTAAGACCGTATCTGGGA-TATGGCATTGTAT
1 GTGATAACATGTAAGACCATGTCTGGGACAATGGCATTGTAT
3248520 G
1 G
3248521 AGCTATTATG
Statistics
Matches: 65, Mismatches: 20, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
41 4 0.06
42 9 0.14
43 52 0.80
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
GTGATAACATGTAAGACCATGTCTGGGACAATGGCATTGTAT
Found at i:3257524 original size:14 final size:14
Alignment explanation
Indices: 3257505--3257544 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
3257495 TTAAAAACCA
*
3257505 TTTATAATTAAATG
1 TTTATAATTAAAAG
*
3257519 TTTATATTTAAAAG
1 TTTATAATTAAAAG
*
3257533 TTTTTAATTAAA
1 TTTATAATTAAA
3257545 CTCACAACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (14 bp):
TTTATAATTAAAAG
Found at i:3267774 original size:41 final size:41
Alignment explanation
Indices: 3267693--3267926 Score: 378
Period size: 41 Copynumber: 5.7 Consensus size: 41
3267683 TTAATTTAAA
* * *
3267693 CAGATTCACTGGCACTTAGCCCTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAG-CCTGCTAGGCTTATAGCCTGATT
* *
3267736 CAGATCACCGACACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
3267777 TAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
3267818 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
3267859 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
3267900 CAGATCACCGGCACTTAGCCTGCTAGG
1 CAGATCACCGGCACTTAGCCTGCTAGG
3267927 TTTTAAAACC
Statistics
Matches: 180, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
41 164 0.91
42 12 0.07
43 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:3286902 original size:26 final size:26
Alignment explanation
Indices: 3286874--3286924 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3286864 TTCATCTTTT
*
3286874 TTTTTTTCA-ATTTTTTTCCGGTTTG
1 TTTTATTCATATTTTTTTCCGGTTTG
*
3286899 TTTTATTCATATTTTTTTTCGGTTTG
1 TTTTATTCATATTTTTTTCCGGTTTG
3286925 AATTAGGTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.10, C:0.10, G:0.12, T:0.69
Consensus pattern (26 bp):
TTTTATTCATATTTTTTTCCGGTTTG
Found at i:3291393 original size:91 final size:91
Alignment explanation
Indices: 3291280--3291461 Score: 337
Period size: 91 Copynumber: 2.0 Consensus size: 91
3291270 CTTTTGGTGC
3291280 CATTGTTTTGGTGCTTGTTTAAGCCCATATAAAAATTTAACAAGCTTACATACCTTATGCTATTG
1 CATTGTTTTGGTGCTTGTTTAAGCCCATATAAAAATTTAACAAGCTTACATACCTTATGCTATTG
3291345 TCCTAGAACAACAAATCCTTCCGGTT
66 TCCTAGAACAACAAATCCTTCCGGTT
* *
3291371 CATTGTTTTGGTGCTTGTTTAAGCCCATATAAAGATTTAACAAGCTTACATACCTTATGCTCTTG
1 CATTGTTTTGGTGCTTGTTTAAGCCCATATAAAAATTTAACAAGCTTACATACCTTATGCTATTG
*
3291436 TCCTGGAACAACAAATCCTTCCGGTT
66 TCCTAGAACAACAAATCCTTCCGGTT
3291462 GCTCCATGTA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 88 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.36
Consensus pattern (91 bp):
CATTGTTTTGGTGCTTGTTTAAGCCCATATAAAAATTTAACAAGCTTACATACCTTATGCTATTG
TCCTAGAACAACAAATCCTTCCGGTT
Found at i:3309938 original size:18 final size:18
Alignment explanation
Indices: 3309915--3309952 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
3309905 GTATTTAAAG
3309915 AAAAACCCCACCACCAAC
1 AAAAACCCCACCACCAAC
3309933 AAAAACCCCACCACCAAC
1 AAAAACCCCACCACCAAC
3309951 AA
1 AA
3309953 CGACAAACTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.47, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAACCCCACCACCAAC
Found at i:3310467 original size:91 final size:92
Alignment explanation
Indices: 3310309--3310477 Score: 279
Period size: 91 Copynumber: 1.8 Consensus size: 92
3310299 CGCACTGACG
* *
3310309 TGGACGCGATTTTGCGATTTTTCTCACGTTAGGTTTTTTTGGCTTTTAAGGTTTAGGGTTCAGGC
1 TGGACGCGATTTCGCGATTTTTCCCACGTTAGGTTTTTTTGGCTTTTAAGGTTTAGGGTTCAGGC
3310374 TTTTAAGGGTTTTTAAGTTCTGGAAAA
66 TTTTAAGGGTTTTTAAGTTCTGGAAAA
*
3310401 TGGACGCGATTTCGC-AGTTTTTCCCACGTTAGG-TTTTTTGGCTTTTAGGGTTTAGGGTTCAGG
1 TGGACGCGATTTCGCGA-TTTTTCCCACGTTAGGTTTTTTTGGCTTTTAAGGTTTAGGGTTCAGG
*
3310464 CTTTTTAGGGTTTT
65 CTTTTAAGGGTTTT
3310478 AGGGTCCTAG
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
91 43 0.60
92 29 0.40
ACGTcount: A:0.15, C:0.12, G:0.27, T:0.45
Consensus pattern (92 bp):
TGGACGCGATTTCGCGATTTTTCCCACGTTAGGTTTTTTTGGCTTTTAAGGTTTAGGGTTCAGGC
TTTTAAGGGTTTTTAAGTTCTGGAAAA
Found at i:3310836 original size:123 final size:123
Alignment explanation
Indices: 3310504--3310850 Score: 515
Period size: 122 Copynumber: 2.8 Consensus size: 123
3310494 TAATTTCGAG
** *
3310504 TTGACGTTTCTGATAAAATAATATAAAATCGCTTCTAGCAGGATGGTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
3310569 AAATCGCGCCCTCGTGGACGCGCTTTTACTACAGTAGGTCACGGAAGAAATAATTATTTT
66 AAATCGCG-CCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAA-TATTTT
* *
3310629 TTGACGTTTCTAAGCAAATAGTATAAAA---CTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * * *
3310691 AAATTGCGGCCTCGT-CAGCGCGCTTTTGCTACAGTAGGTCATGTAAGAAATAA-ATTTT
66 AAATCGC-GCCTCGTGGA-CGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATATTTT
*
3310749 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
3310814 AAATCGCGCCTTCGTGGACGCGCTTTTGCTACAGTAG
66 AAATCGCGCC-TCGTGGACGCGCTTTTGCTACAGTAG
3310851 CATGTTTGGG
Statistics
Matches: 200, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
120 31 0.16
121 1 0.00
122 80 0.40
123 63 0.31
124 1 0.00
125 24 0.12
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (123 bp):
TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATATTTT
Found at i:3311961 original size:296 final size:296
Alignment explanation
Indices: 3311427--3312016 Score: 1108
Period size: 296 Copynumber: 2.0 Consensus size: 296
3311417 CGGTGGATGG
3311427 GACATGTACGTCAGTGGCTCAATGTTTGATACTGGAAATACATACTGGGGAGCGGCATCAAGTTC
1 GACATGTACGTCAGTGGCTCAATGTTTGATACTGGAAATACATACTGGGGAGCGGCATCAAGTTC
*
3311492 TAGCGGGTGGCAATCTACATCCAATTGGGGATGTTATCAAATGCCTAGAAGAAGGGATGATGTAC
66 TAGCGGGTGGCAATCTACATCCAATTGGGGATGTTATCAAATGCCCAGAAGAAGGGATGATGTAC
3311557 TCCCTACGACGTCAACCGATGAGGGGACCTCGTACAATACAGATGATTGTGGGTTAGAAGATGAC
131 TCCCTACGACGTCAACCGATGAGGGGACCTCGTACAATACAGATGATTGTGGGTTAGAAGATGAC
3311622 TCGGATGTGGATCCACCTCGAGAGCCCGGGCCGGATGGTGCAGAAGTTGGCTTATTTTTTGAACT
196 TCGGATGTGGATCCACCTCGAGAGCCCGGGCCGGATGGTGCAGAAGTTGGCTTATTTTTTGAACT
3311687 GGAGCCTATTCCAACAGAAGTTGAAGATGCTAATGA
261 GGAGCCTATTCCAACAGAAGTTGAAGATGCTAATGA
* * * * *
3311723 GACATGTACGTCGGTGGCTCGATGTTTGATGCTGGAAATACGTACTGGGGAGTGGCATCAAGTTC
1 GACATGTACGTCAGTGGCTCAATGTTTGATACTGGAAATACATACTGGGGAGCGGCATCAAGTTC
3311788 TAGCGGGTGGCAATCTACATCCAATTGGGGATGTTATCAAATGCCCAGAAGAAGGGATGATGTAC
66 TAGCGGGTGGCAATCTACATCCAATTGGGGATGTTATCAAATGCCCAGAAGAAGGGATGATGTAC
* *
3311853 TCCCTACGACGTCAACCGGTGAGGGGACCTCGTACACTACAGATGATTGTGGGTTAGAAGATGAC
131 TCCCTACGACGTCAACCGATGAGGGGACCTCGTACAATACAGATGATTGTGGGTTAGAAGATGAC
3311918 TCGGATGTGGATCCACCTCGAGAGCCCGGGCCGGATGGTGCAGAAGTTGGCTTATTTTTTGAACT
196 TCGGATGTGGATCCACCTCGAGAGCCCGGGCCGGATGGTGCAGAAGTTGGCTTATTTTTTGAACT
3311983 GGAGCCTATTCCAACAGAAGTTGAAGATGCTAAT
261 GGAGCCTATTCCAACAGAAGTTGAAGATGCTAAT
3312017 AGGAGTTCAG
Statistics
Matches: 286, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
296 286 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (296 bp):
GACATGTACGTCAGTGGCTCAATGTTTGATACTGGAAATACATACTGGGGAGCGGCATCAAGTTC
TAGCGGGTGGCAATCTACATCCAATTGGGGATGTTATCAAATGCCCAGAAGAAGGGATGATGTAC
TCCCTACGACGTCAACCGATGAGGGGACCTCGTACAATACAGATGATTGTGGGTTAGAAGATGAC
TCGGATGTGGATCCACCTCGAGAGCCCGGGCCGGATGGTGCAGAAGTTGGCTTATTTTTTGAACT
GGAGCCTATTCCAACAGAAGTTGAAGATGCTAATGA
Found at i:3314040 original size:116 final size:116
Alignment explanation
Indices: 3313831--3314048 Score: 391
Period size: 116 Copynumber: 1.9 Consensus size: 116
3313821 TGATAAATTG
* *
3313831 TATTTAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATACAATTATTAATTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
3313896 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
* *
3313947 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTATTTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
3314012 TAGTACGAGTCAAAACATTTTTCCAAATCTAACATTA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
3314049 CGTTAAGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 97 1.00
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (116 bp):
TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
Found at i:3314193 original size:49 final size:51
Alignment explanation
Indices: 3314124--3314227 Score: 167
Period size: 50 Copynumber: 2.1 Consensus size: 51
3314114 AATTAAATTA
* *
3314124 GGTTAGGATTTTTAAGTTAAGGGTTTAGA-TTTTTAATTGAATTAGGTTAG
1 GGTTAGGATTTTTAAGTTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAG
*
3314174 GGTTAGGGTTTTTAA-TTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAG
1 GGTTAGGATTTTTAAGTTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAG
3314224 GGTT
1 GGTT
3314228 TTTAATTAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
49 13 0.26
50 37 0.74
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (51 bp):
GGTTAGGATTTTTAAGTTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAG
Done.