Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57797951
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1092422 characters in sequence are not A, C, G, or T
File 121 of 187
Found at i:35865747 original size:10 final size:11
Alignment explanation
Indices: 35865723--35865773 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
35865713 TTTAACTCGA
35865723 TTTTTTTGTCAC
1 TTTTTTT-TCAC
35865735 TTTTTTTTC-C
1 TTTTTTTTCAC
35865745 TTTTTTTTCGA-
1 TTTTTTTTC-AC
* *
35865756 TTTTTTTTGAA
1 TTTTTTTTCAC
35865767 TTTTTTT
1 TTTTTTT
35865774 CTGAATTTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
10 11 0.31
11 17 0.49
12 7 0.20
ACGTcount: A:0.08, C:0.10, G:0.06, T:0.76
Consensus pattern (11 bp):
TTTTTTTTCAC
Found at i:35865759 original size:11 final size:11
Alignment explanation
Indices: 35865719--35865774 Score: 55
Period size: 10 Copynumber: 5.2 Consensus size: 11
35865709 TTTTTTTAAC
35865719 TCGATTTTTTT
1 TCGATTTTTTT
35865730 GTC-ACTTTTTTT
1 -TCGA-TTTTTTT
*
35865742 TC-CTTTTTTT
1 TCGATTTTTTT
35865752 TCGATTTTTTT
1 TCGATTTTTTT
*
35865763 T-GAATTTTTT
1 TCGATTTTTTT
35865773 TC
1 TC
35865775 TGAATTTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 18 0.47
11 11 0.29
12 9 0.24
ACGTcount: A:0.09, C:0.12, G:0.07, T:0.71
Consensus pattern (11 bp):
TCGATTTTTTT
Found at i:35865771 original size:12 final size:12
Alignment explanation
Indices: 35865746--35865781 Score: 51
Period size: 10 Copynumber: 3.2 Consensus size: 12
35865736 TTTTTTTCCT
35865746 TTTTTTTC-G-A
1 TTTTTTTCTGAA
35865756 TTTTTTT-TGAA
1 TTTTTTTCTGAA
35865767 TTTTTTTCTGAA
1 TTTTTTTCTGAA
35865779 TTT
1 TTT
35865782 CTTCTCCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.35
11 8 0.35
12 7 0.30
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.72
Consensus pattern (12 bp):
TTTTTTTCTGAA
Found at i:35868399 original size:223 final size:223
Alignment explanation
Indices: 35868011--35868448 Score: 849
Period size: 223 Copynumber: 2.0 Consensus size: 223
35868001 AATCTGAGAG
*
35868011 ACATACAATTCGGCTAGTTTATCTAATGAAAAATCCGTACGCACGGGGACAAAGTGAGCCGACTT
1 ACATACAATTCGGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGACAAAGTGAGCCGACTT
35868076 AGTCAGCCTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCTGACAATGGCAGTCCGGACA
66 AGTCAGCCTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCTGACAATGGCAGTCCGGACA
35868141 CAAAGTCCATTGTGACTCGGTCCCATTTCCACTCGGGTATCATGATCGGCTGAAGTAACCCTGAA
131 CAAAGTCCATTGTGACTCGGTCCCATTTCCACTCGGGTATCATGATCGGCTGAAGTAACCCTGAA
35868206 GGCACTTGATGTTCCGCTTTTCTGTGAA
196 GGCACTTGATGTTCCGCTTTTCTGTGAA
*
35868234 ACATACAATTCGGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTT
1 ACATACAATTCGGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGACAAAGTGAGCCGACTT
*
35868299 AGTCAGCCTATCAACATCAACCCAAATCGCATCCTTCTTACTTGCTGACAATGGCAGTCCGGACA
66 AGTCAGCCTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCTGACAATGGCAGTCCGGACA
35868364 CAAAGTCCATTGTGACTCGGTCCCATTTCCACTCGGGTATCATGATCGGCTGAAGTAACCCTGAA
131 CAAAGTCCATTGTGACTCGGTCCCATTTCCACTCGGGTATCATGATCGGCTGAAGTAACCCTGAA
35868429 GGCACTTGATGTTCCGCTTT
196 GGCACTTGATGTTCCGCTTT
35868449 CACTTGTTGA
Statistics
Matches: 212, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
223 212 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (223 bp):
ACATACAATTCGGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGACAAAGTGAGCCGACTT
AGTCAGCCTATCAACAACAACCCAAATCGCATCCTTCTTACTTGCTGACAATGGCAGTCCGGACA
CAAAGTCCATTGTGACTCGGTCCCATTTCCACTCGGGTATCATGATCGGCTGAAGTAACCCTGAA
GGCACTTGATGTTCCGCTTTTCTGTGAA
Found at i:35873393 original size:27 final size:27
Alignment explanation
Indices: 35873363--35873567 Score: 189
Period size: 27 Copynumber: 7.6 Consensus size: 27
35873353 ATATTGAGCC
* *
35873363 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
35873390 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
35873417 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
35873445 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
35873472 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * **
35873499 CGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCTACATAATCAACT
* *
35873526 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
35873553 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35873568 GTACAATTTA
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
27 129 0.84
28 25 0.16
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:35873528 original size:54 final size:54
Alignment explanation
Indices: 35873363--35873566 Score: 225
Period size: 54 Copynumber: 3.8 Consensus size: 54
35873353 ATATTGAGCC
* * * *
35873363 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
* **
35873417 CGCACACTTAGTGC-TACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAGTCA-ACTCGCACACTTAGTGCCACATAATCAATT
* ** * * *
35873472 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
*
35873526 CGCACACTTAGTGCAACATAGTCGAA-TCGCACACTTAGTGC
1 CGCACACTTAGTGCATCATAGTC-AACTCGCACACTTAGTGC
35873567 TGTACAATTT
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
54 78 0.61
55 47 0.37
56 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
Found at i:35873581 original size:109 final size:109
Alignment explanation
Indices: 35873362--35873566 Score: 272
Period size: 109 Copynumber: 1.9 Consensus size: 109
35873352 TATATTGAGC
* * *
35873362 CCGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTA
1 CCGCACACTTAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAATCAAATCGCACACTTA
* *
35873427 GTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
66 GTGCAACATAGTCAGAATCGCACACTTAGTGCCGCAT-GTCAATT
* ** * **
35873472 -CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATATTCATTTCGCACACTT
1 CCGCACACTTAGTGCTAT-ATAATCAACTCGCACACTTAGTGCAACATAATCAAATCGCACACTT
35873535 AGTGCAACATAGTC-GAATCGCACACTTAGTGC
65 AGTGCAACATAGTCAGAATCGCACACTTAGTGC
35873567 TGTACAATTT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (109 bp):
CCGCACACTTAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAATCAAATCGCACACTTA
GTGCAACATAGTCAGAATCGCACACTTAGTGCCGCATGTCAATT
Found at i:35876618 original size:27 final size:28
Alignment explanation
Indices: 35876555--35876618 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 28
35876545 AACACTCCGG
* * *
35876555 AGAAATGGAAGTCTTTGTGGCAATTTAT
1 AGAAATGGAAGCCTTTATGGCAATCTAT
*
35876583 -GAAATGGAAGCCTTTATGGCGATCTAT
1 AGAAATGGAAGCCTTTATGGCAATCTAT
35876610 AGAAA-GGAA
1 AGAAATGGAA
35876619 TGTCTTCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.28
Consensus pattern (28 bp):
AGAAATGGAAGCCTTTATGGCAATCTAT
Found at i:35876793 original size:5 final size:5
Alignment explanation
Indices: 35876783--35876811 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
35876773 TAGTTTATTT
35876783 ATATA ATATA ATATA ATATA ATATA ATAT
1 ATATA ATATA ATATA ATATA ATATA ATAT
35876812 GACTTTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:35876874 original size:18 final size:18
Alignment explanation
Indices: 35876837--35876874 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
35876827 AATATTTTTA
*
35876837 TTATATTTTTTGTAAGTT
1 TTATATTTTTTATAAGTT
35876855 TTATAATTTTTTATAA-TT
1 TTAT-ATTTTTTATAAGTT
35876873 TT
1 TT
35876875 TTGCATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
TTATATTTTTTATAAGTT
Found at i:35877471 original size:11 final size:11
Alignment explanation
Indices: 35877452--35877492 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
35877442 CCTTGTAATC
*
35877452 TTCTCTTTTTT
1 TTCTTTTTTTT
35877463 TTCTTTTTTTT
1 TTCTTTTTTTT
35877474 TTCTGTTTTTTT
1 TTCT-TTTTTTT
35877486 TT-TTTTT
1 TTCTTTTT
35877493 GCATTTTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 4 0.14
11 15 0.54
12 9 0.32
ACGTcount: A:0.00, C:0.10, G:0.02, T:0.88
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:35877482 original size:22 final size:21
Alignment explanation
Indices: 35877452--35877492 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
35877442 CCTTGTAATC
35877452 TTCTCTTTTTTTTCTTTTTTTT
1 TTCTCTTTTTTTT-TTTTTTTT
*
35877474 TTCTGTTTTTTTTTTTTTT
1 TTCTCTTTTTTTTTTTTTT
35877493 GCATTTTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.00, C:0.10, G:0.02, T:0.88
Consensus pattern (21 bp):
TTCTCTTTTTTTTTTTTTTTT
Found at i:35878457 original size:29 final size:29
Alignment explanation
Indices: 35878424--35878498 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
35878414 AAAAACATGT
*
35878424 TGACGTGGACGCACTTT-AGTAAAAAGAGC
1 TGACGAGGACGC-CTTTCAGTAAAAAGAGC
* * *
35878453 TGACGAGGGCGCGTTTCAGTAAAAAGCGC
1 TGACGAGGACGCCTTTCAGTAAAAAGAGC
35878482 TGACGAGGACGCGCTTT
1 TGACGAGGACGC-CTTT
35878499 TCCCCGTGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 3 0.08
29 32 0.84
30 3 0.08
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (29 bp):
TGACGAGGACGCCTTTCAGTAAAAAGAGC
Found at i:35878982 original size:84 final size:85
Alignment explanation
Indices: 35878822--35878988 Score: 223
Period size: 84 Copynumber: 2.0 Consensus size: 85
35878812 TGTACCGTTG
* *
35878822 ATTCTAAAAAAATAATTTTGAAACGATGGTTCTGAAAACATATCTCGGGATCCTCAAGAAATCTG
1 ATTCTAAAAAAATAATTTTGAAACGATGGTTCTGAAAACAAATCTCGGGATCCACAAGAAATCTG
35878887 ATAGTTGGGGTTAAAAAATA
66 ATAGTTGGGGTTAAAAAATA
* * * * *
35878907 ATTCTGAAAAAATAATTTTTAGAA-GATGGTTTTGAAAA-AAATC-CTGGGATTCACGAGAAATC
1 ATTCTAAAAAAATAATTTTGA-AACGATGGTTCTGAAAACAAATCTC-GGGATCCACAAGAAATC
*
35878969 TGATAGTTGGGGTTGAAAAA
64 TGATAGTTGGGGTTAAAAAA
35878989 CGCTTCAAGT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
83 1 0.01
84 37 0.51
85 32 0.44
86 2 0.03
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.30
Consensus pattern (85 bp):
ATTCTAAAAAAATAATTTTGAAACGATGGTTCTGAAAACAAATCTCGGGATCCACAAGAAATCTG
ATAGTTGGGGTTAAAAAATA
Found at i:35882257 original size:59 final size:58
Alignment explanation
Indices: 35882188--35882354 Score: 217
Period size: 59 Copynumber: 2.8 Consensus size: 58
35882178 TAACTCCTAA
* *
35882188 TTTATTAAATGAAACAATGAAAAAATAATTTGTACAAACATATTTAAAAGAAATTCTAT
1 TTTATTAAATGAAACAAT-AAAAAATAATTTGTACAAAAATATTCAAAAGAAATTCTAT
* * * *
35882247 TTTATTAAATGAAACAATTTAAAAATAATTTATACAAAAATATTCAAAAGAACTTCTGT
1 TTTATTAAATGAAACAA-TAAAAAATAATTTGTACAAAAATATTCAAAAGAAATTCTAT
* * * *
35882306 TTCATTAAATGAAACAATATAAAAACAGTTTGTACAAATATATTCAAAA
1 TTTATTAAATGAAACAATA-AAAAATAATTTGTACAAAAATATTCAAAA
35882355 ATAAATCAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
58 1 0.01
59 92 0.98
60 1 0.01
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.34
Consensus pattern (58 bp):
TTTATTAAATGAAACAATAAAAAATAATTTGTACAAAAATATTCAAAAGAAATTCTAT
Found at i:35882760 original size:18 final size:18
Alignment explanation
Indices: 35882717--35882752 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
35882707 GAGTGGAAAA
*
35882717 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGTT
35882735 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGTT
35882753 CAGATACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (18 bp):
AGGATACATATAAGGGTT
Found at i:35889459 original size:8 final size:8
Alignment explanation
Indices: 35889443--35889479 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
35889433 AGCTTCCATT
35889443 TTTTC-TC
1 TTTTCTTC
35889450 TTTTCTTC
1 TTTTCTTC
35889458 TTTTCTTC
1 TTTTCTTC
35889466 TTTTCTTC
1 TTTTCTTC
35889474 TTTTCT
1 TTTTCT
35889480 ACTCATTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 5 0.17
8 24 0.83
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTCTTC
Found at i:35900582 original size:16 final size:17
Alignment explanation
Indices: 35900563--35900595 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
35900553 TTTTTTAATA
35900563 AAAATA-TTATAATTTT
1 AAAATATTTATAATTTT
35900579 AAAATATTTATAATTTT
1 AAAATATTTATAATTTT
35900596 TTAATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AAAATATTTATAATTTT
Found at i:35900624 original size:20 final size:20
Alignment explanation
Indices: 35900552--35900633 Score: 77
Period size: 19 Copynumber: 4.2 Consensus size: 20
35900542 TGGTATTGTT
*
35900552 ATTTTTTAATAAAAATATTATA
1 ATTTTTTAAT--AAATTTTATA
35900574 A--TTTT-A-AAATATTTATA
1 ATTTTTTAATAAAT-TTTATA
*
35900591 ATTTTTTAAT-AATTTTATG
1 ATTTTTTAATAAATTTTATA
35900610 ATTTTTTAATAAATTTTA-A
1 ATTTTTTAATAAATTTTATA
35900629 ATTTT
1 ATTTT
35900634 AAAAGGGCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
16 4 0.08
17 6 0.12
19 25 0.49
20 15 0.29
22 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (20 bp):
ATTTTTTAATAAATTTTATA
Found at i:35905108 original size:13 final size:13
Alignment explanation
Indices: 35905090--35905114 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35905080 TGTATTTTGA
35905090 ACAAAATATTTAC
1 ACAAAATATTTAC
35905103 ACAAAATATTTA
1 ACAAAATATTTA
35905115 AATTTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
ACAAAATATTTAC
Found at i:35905963 original size:21 final size:21
Alignment explanation
Indices: 35905939--35905991 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
35905929 CATTATTTCT
35905939 AATCTCACCGCTACAGT-ATCC
1 AATCTCACCGCTACAGTAAT-C
*
35905960 AATCTCACCGCTACAGTAATT
1 AATCTCACCGCTACAGTAATC
35905981 AATCTCACCGC
1 AATCTCACCGC
35905992 CACCGTTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAATC
Found at i:35908038 original size:13 final size:13
Alignment explanation
Indices: 35908001--35908067 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
35907991 AGTTCTTCGT
35908001 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
35908014 TACTTTTTGAAAAG
1 TGC-TTTTGAAAAG
* *
35908028 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
35908041 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
35908054 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
35908067 T
1 T
35908068 TTGGTTTAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
13 33 0.73
14 12 0.27
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:35915269 original size:41 final size:41
Alignment explanation
Indices: 35915239--35915438 Score: 217
Period size: 41 Copynumber: 4.9 Consensus size: 41
35915229 GTGAAATTGT
* * *
35915239 TCAGACTATACGTCTAGCAGGCTAAGTGCCAGTGAATTGAA
1 TCAGACTATACGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
*
35915280 TC-GAACTATACGTCC-AGCAGTCTAAGTGCCGGTGAACTGAA
1 TCAG-ACTATACG-CCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * *
35915321 TCAGGCTACAAGCCTAGCAGGCTAAATGCCGGTGAACTGAA
1 TCAGACTATACGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * *
35915362 TCAGGCTATAGGCCTAGCAGGCTAAGTGCCGGTGAACGGAA
1 TCAGACTATACGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * *
35915403 TTAGACTATAAGCCTATCAGG-TGAAGTGCCAGTGAA
1 TCAGACTATACGCCTAGCAGGCT-AAGTGCCGGTGAA
35915439 TCTGTTTAAA
Statistics
Matches: 136, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
40 4 0.03
41 130 0.96
42 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.21
Consensus pattern (41 bp):
TCAGACTATACGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:35915661 original size:31 final size:31
Alignment explanation
Indices: 35915626--35915687 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
35915616 TTTAAGTGTG
35915626 TATATGTATGCATTCGGCATAGGTGGATATA
1 TATATGTATGCATTCGGCATAGGTGGATATA
*
35915657 TATATGTATGCATTCGGCATAGGTGGGTATA
1 TATATGTATGCATTCGGCATAGGTGGATATA
35915688 AGTGAATATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.35
Consensus pattern (31 bp):
TATATGTATGCATTCGGCATAGGTGGATATA
Found at i:35923116 original size:41 final size:41
Alignment explanation
Indices: 35922943--35923142 Score: 224
Period size: 41 Copynumber: 4.9 Consensus size: 41
35922933 GTGAAATTGT
* * *
35922943 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* *
35922984 TCGGACTATACGTCC-AGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATAAG-CCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * *
35923025 TCAGGCTACAAGCCTAGCAGGCTAAGCGCCGGTGAACTGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * * *
35923066 TCAGGCTATAGGCCTAGCAGGCTAAGTGTCGGTGGACGGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * *
35923107 TTAGACTATAAGCCTATCAGG-TGAAGTGCCAGTGAA
1 TCAGACTATAAGCCTAGCAGGCT-AAGTGCCGGTGAA
35923143 TCTGTTTAAA
Statistics
Matches: 135, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 3 0.02
41 131 0.97
42 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.20
Consensus pattern (41 bp):
TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:35923368 original size:31 final size:31
Alignment explanation
Indices: 35923330--35923391 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
35923320 TTTAAGTGTG
*
35923330 TATATGTATGCATTTGGCATAGGTGGATATA
1 TATATGTATGCATTCGGCATAGGTGGATATA
*
35923361 TATATGTATGCATTCGGCATAGGTGGGTATA
1 TATATGTATGCATTCGGCATAGGTGGATATA
35923392 AGTAAATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.37
Consensus pattern (31 bp):
TATATGTATGCATTCGGCATAGGTGGATATA
Found at i:35923411 original size:33 final size:31
Alignment explanation
Indices: 35923336--35923412 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
35923326 TGTGTATATG
* * *
35923336 TATGCATTTGGCATAGGTGGATATATATATG
1 TATGCATTCGGCATAGGTGGATATATAAATA
*
35923367 TATGCATTCGGCATAGGTGGGTATAAGTAAATA
1 TATGCATTCGGCATAGGTGGATAT-A-TAAATA
*
35923400 TGTGCATTCGGCA
1 TATGCATTCGGCA
35923413 CTTATAGTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 22 0.56
32 1 0.03
33 16 0.41
ACGTcount: A:0.29, C:0.10, G:0.27, T:0.34
Consensus pattern (31 bp):
TATGCATTCGGCATAGGTGGATATATAAATA
Found at i:35940484 original size:31 final size:31
Alignment explanation
Indices: 35940446--35940507 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
35940436 ACATGGTAAT
35940446 GAATTCTTCTATGCGGTCAACTGAGCGGTTC
1 GAATTCTTCTATGCGGTCAACTGAGCGGTTC
*
35940477 GAATTCTTCTATGCGGTCAACTTAGCGGTTC
1 GAATTCTTCTATGCGGTCAACTGAGCGGTTC
35940508 ACATATAGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (31 bp):
GAATTCTTCTATGCGGTCAACTGAGCGGTTC
Found at i:35948794 original size:25 final size:25
Alignment explanation
Indices: 35948766--35948914 Score: 126
Period size: 25 Copynumber: 6.0 Consensus size: 25
35948756 CCTGAAAAAT
* *
35948766 CTTTGTGGCATATTATCTGGAAAGC
1 CTTTGTGGCGTATTATATGGAAAGC
* * *
35948791 CTTTGTGGCGTATTATCTAGAAGGC
1 CTTTGTGGCGTATTATATGGAAAGC
*
35948816 CTTTGTGGC-TAATCT-TATGAAAAGC
1 CTTTGTGGCGT-AT-TATATGGAAAGC
* * * *
35948841 TTTTGAGGCGTATTATTTGGAACGC
1 CTTTGTGGCGTATTATATGGAAAGC
*
35948866 CTTTGTGGC-TAGTCT-TATGAAAAGC
1 CTTTGTGGCGTA-T-TATATGGAAAGC
*
35948891 CTTTGTGGCGTATTGTATGGAAAG
1 CTTTGTGGCGTATTATATGGAAAG
35948915 ACTATCTAAC
Statistics
Matches: 98, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
24 5 0.05
25 88 0.90
26 5 0.05
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (25 bp):
CTTTGTGGCGTATTATATGGAAAGC
Found at i:35948851 original size:50 final size:50
Alignment explanation
Indices: 35948786--35948904 Score: 184
Period size: 50 Copynumber: 2.4 Consensus size: 50
35948776 TATTATCTGG
*
35948786 AAAGCCTTTGTGGCGTATTATCTAGAAGGCCTTTGTGGCTAATCTTATGA
1 AAAGCCTTTGTGGCGTATTATCTAGAACGCCTTTGTGGCTAATCTTATGA
* * * * *
35948836 AAAGCTTTTGAGGCGTATTATTTGGAACGCCTTTGTGGCTAGTCTTATGA
1 AAAGCCTTTGTGGCGTATTATCTAGAACGCCTTTGTGGCTAATCTTATGA
35948886 AAAGCCTTTGTGGCGTATT
1 AAAGCCTTTGTGGCGTATT
35948905 GTATGGAAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (50 bp):
AAAGCCTTTGTGGCGTATTATCTAGAACGCCTTTGTGGCTAATCTTATGA
Found at i:35953688 original size:17 final size:18
Alignment explanation
Indices: 35953666--35953701 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
35953656 CTTTAAACTT
*
35953666 TTAAAA-CTCTAAAATTC
1 TTAAAACCTCCAAAATTC
35953683 TTAAAACCTCCAAAATTC
1 TTAAAACCTCCAAAATTC
35953701 T
1 T
35953702 AGACTCACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (18 bp):
TTAAAACCTCCAAAATTC
Found at i:35954568 original size:85 final size:85
Alignment explanation
Indices: 35954425--35954767 Score: 679
Period size: 85 Copynumber: 4.0 Consensus size: 85
35954415 TCAATTTCTG
35954425 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
1 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
35954490 CGCTATTTTGCAAAAAACAA
66 CGCTATTTTGCAAAAAACAA
35954510 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
1 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
35954575 CGCTATTTTGCAAAAAACAA
66 CGCTATTTTGCAAAAAACAA
35954595 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
1 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
35954660 CGCTATTTTGCAAAAAACAA
66 CGCTATTTTGCAAAAAACAA
35954680 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
1 TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
35954745 CGCTATTTTGCAAAAAA-AA
66 CGCTATTTTGCAAAAAACAA
35954764 TGCA
1 TGCA
35954768 TTGGAACGTG
Statistics
Matches: 258, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
84 6 0.02
85 252 0.98
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.41
Consensus pattern (85 bp):
TGCACTAGAATAGTTCTTACTTTGAATGTTTCTAATGTCAATACTTTTTGAGCGATTTTGCTTTA
CGCTATTTTGCAAAAAACAA
Found at i:35955727 original size:22 final size:22
Alignment explanation
Indices: 35955699--35955744 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
35955689 CAAATTTGGC
35955699 ATTAAGTTCTATATATTACACT
1 ATTAAGTTCTATATATTACACT
35955721 ATTAAGTTCTATATATTACACT
1 ATTAAGTTCTATATATTACACT
35955743 AT
1 AT
35955745 AAATAGACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.13, G:0.04, T:0.46
Consensus pattern (22 bp):
ATTAAGTTCTATATATTACACT
Found at i:35956426 original size:19 final size:19
Alignment explanation
Indices: 35956402--35956440 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
35956392 AATAATGCGA
35956402 TGTTAGATATTTTACCGTT
1 TGTTAGATATTTTACCGTT
*
35956421 TGTTAGATATTTTACTGTT
1 TGTTAGATATTTTACCGTT
35956440 T
1 T
35956441 ATTTAAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.08, G:0.15, T:0.56
Consensus pattern (19 bp):
TGTTAGATATTTTACCGTT
Found at i:35963337 original size:22 final size:22
Alignment explanation
Indices: 35963305--35963356 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
35963295 GGGTAGGAAA
* * *
35963305 CTGCATTTGTATTTGATTTGTT
1 CTGCATCTGTATCTGATATGTT
*
35963327 TTGCATCTGTATCTGATATGTT
1 CTGCATCTGTATCTGATATGTT
35963349 CTGCATCT
1 CTGCATCT
35963357 TATATGAACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.52
Consensus pattern (22 bp):
CTGCATCTGTATCTGATATGTT
Found at i:35965119 original size:25 final size:25
Alignment explanation
Indices: 35965091--35965138 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
35965081 AAGCTCATAT
* *
35965091 GAGCCATGTAACAGGAAGCTTATCC
1 GAGCCATATAACAGGAAACTTATCC
**
35965116 GAGCTGTATAACAGGAAACTTAT
1 GAGCCATATAACAGGAAACTTAT
35965139 AAGAGTTTGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (25 bp):
GAGCCATATAACAGGAAACTTATCC
Found at i:35965207 original size:24 final size:25
Alignment explanation
Indices: 35965180--35965228 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
35965170 TAACAGGTAA
*
35965180 CTCCGAAGAGCTAT-TATCAGGAAG
1 CTCCGAAGAGCCATGTATCAGGAAG
* *
35965204 CTCCGGATAGCCATGTATCAGGAAG
1 CTCCGAAGAGCCATGTATCAGGAAG
35965229 TTCAAGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (25 bp):
CTCCGAAGAGCCATGTATCAGGAAG
Found at i:35968794 original size:3 final size:3
Alignment explanation
Indices: 35968788--35968813 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
35968778 TGGTCACAAC
35968788 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
35968814 GTTCTTGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:35970009 original size:19 final size:18
Alignment explanation
Indices: 35969963--35970008 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
35969953 TATATTTTTT
35969963 TAAATATTTTGATAATTA
1 TAAATATTTTGATAATTA
*
35969981 TTAATATTTTGATAATTTA
1 TAAATATTTTGATAA-TTA
35970000 TAAAT-TTTT
1 TAAATATTTT
35970009 TTATACTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
TAAATATTTTGATAATTA
Found at i:35970191 original size:27 final size:26
Alignment explanation
Indices: 35970108--35970191 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 26
35970098 TAGATATGCC
* *
35970108 TTTTTATTAATTTTTATAAATTATTAA
1 TTTTTTTTAATTTTTAAAAATTA-TAA
** * *
35970135 TATTTTGTTTGAATTTTTTCATATTTTAA
1 T-TTTT-TTT-AATTTTTAAAAATTATAA
35970164 TTTTTTTTAAATTTTTAAAAATTATAA
1 TTTTTTTT-AATTTTTAAAAATTATAA
35970191 T
1 T
35970192 AAATTGTATA
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
27 19 0.43
28 8 0.18
29 6 0.14
30 11 0.25
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTTTTTTAATTTTTAAAAATTATAA
Found at i:35972626 original size:25 final size:25
Alignment explanation
Indices: 35972579--35972631 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
35972569 TTTGTTATGT
* *
35972579 TATGCCATGATCTGATTTAATATTA
1 TATGCCATGATCTGATCTAATATAA
* * *
35972604 TATGCTATGGTCTGATCTGATATAA
1 TATGCCATGATCTGATCTAATATAA
35972629 TAT
1 TAT
35972632 ACTACGATTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (25 bp):
TATGCCATGATCTGATCTAATATAA
Found at i:35982973 original size:20 final size:20
Alignment explanation
Indices: 35982944--35982985 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
35982934 TCAGAAATAG
*
35982944 TGGTTTCAGGACCACAATTC
1 TGGTTGCAGGACCACAATTC
*
35982964 TGGTTGCAGGACTACAATTC
1 TGGTTGCAGGACCACAATTC
35982984 TG
1 TG
35982986 ATGAGTGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (20 bp):
TGGTTGCAGGACCACAATTC
Found at i:36003202 original size:20 final size:21
Alignment explanation
Indices: 36003172--36003212 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
36003162 AATTCCTTAG
36003172 CACATAAATTACTAAAATTCT
1 CACATAAATTACTAAAATTCT
*
36003193 CACA-AAATTACTCAAATTCT
1 CACATAAATTACTAAAATTCT
36003213 TTGTAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (21 bp):
CACATAAATTACTAAAATTCT
Found at i:36005640 original size:27 final size:27
Alignment explanation
Indices: 36005573--36005643 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
36005563 GAGGTCAATT
36005573 AATGACTGAAATACCCCCATAGAGTAA
1 AATGACTGAAATACCCCCATAGAGTAA
36005600 AATGA-TCGAAATACCCCCATAG-GATAA
1 AATGACT-GAAATACCCCCATAGAG-TAA
**
36005627 AATGACTGTTATACCCC
1 AATGACTGAAATACCCC
36005644 TAGGAGATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 2 0.05
27 36 0.92
28 1 0.03
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.21
Consensus pattern (27 bp):
AATGACTGAAATACCCCCATAGAGTAA
Found at i:36005953 original size:33 final size:33
Alignment explanation
Indices: 36005905--36005976 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
36005895 TGTATTATTG
* *
36005905 CACTATACTGATACTGTATCA-GGCTAAGGCCCA
1 CACTGTACTGATACTGAAT-AGGGCTAAGGCCCA
* *
36005938 CACTGTACTGTTACTGAATAGGGCTCAGGCCCA
1 CACTGTACTGATACTGAATAGGGCTAAGGCCCA
*
36005971 GACTGT
1 CACTGT
36005977 TATTGCATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
32 1 0.03
33 32 0.97
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (33 bp):
CACTGTACTGATACTGAATAGGGCTAAGGCCCA
Found at i:36008832 original size:15 final size:15
Alignment explanation
Indices: 36008788--36008833 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
36008778 AGGAATTTTG
36008788 AAAAAATTAAGAAAA
1 AAAAAATTAAGAAAA
*
36008803 AATAAAA-TAATAAAA
1 AA-AAAATTAAGAAAA
36008818 ATAAAAATTAA-AAAA
1 A-AAAAATTAAGAAAA
36008833 A
1 A
36008834 CCAAACTCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 19 0.70
16 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (15 bp):
AAAAAATTAAGAAAA
Found at i:36013909 original size:23 final size:23
Alignment explanation
Indices: 36013879--36013924 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
36013869 TATTATTATA
*
36013879 TTTTATATATATT-CGTTTATTTT
1 TTTTATATACATTAC-TTTATTTT
36013902 TTTTATATACATTACTTTATTTT
1 TTTTATATACATTACTTTATTTT
36013925 ATATACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTATATACATTACTTTATTTT
Found at i:36013924 original size:21 final size:20
Alignment explanation
Indices: 36013874--36013932 Score: 50
Period size: 23 Copynumber: 2.8 Consensus size: 20
36013864 TATTGTATTA
*
36013874 TTATATTTTATATATATTCGT
1 TTAT-TTTTATATACATTCGT
36013895 TTATTTTTTTTATATACATTAC-T
1 TTA---TTTTTATATACATT-CGT
36013918 TTA-TTTTATATACAT
1 TTATTTTTATATACAT
36013933 CATTGTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
19 12 0.36
21 3 0.09
23 16 0.48
24 2 0.06
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.63
Consensus pattern (20 bp):
TTATTTTTATATACATTCGT
Found at i:36028218 original size:28 final size:28
Alignment explanation
Indices: 36028166--36028228 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
36028156 AAATAGAAAT
36028166 ATAATTAAATATAATAATATCAATAACA
1 ATAATTAAATATAATAATATCAATAACA
36028194 ATAA-TAAATAGTAATAATAAT-AATAA-A
1 ATAATTAAATA-TAATAAT-ATCAATAACA
*
36028221 TTAATTAA
1 ATAATTAA
36028229 TAGCACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
27 10 0.32
28 19 0.61
29 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (28 bp):
ATAATTAAATATAATAATATCAATAACA
Found at i:36031301 original size:21 final size:21
Alignment explanation
Indices: 36031262--36031302 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36031252 AAAATTAAGA
*
36031262 AAAATTAAAATAATAAAAATT
1 AAAATTAAAATAACAAAAATT
*
36031283 AAAATTAAAATAACCAAAAT
1 AAAATTAAAATAACAAAAAT
36031303 CCCAACTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAATTAAAATAACAAAAATT
Found at i:36040966 original size:21 final size:21
Alignment explanation
Indices: 36040940--36040992 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
36040930 CATCTTCAGC
*
36040940 AACTTCTTCTTCT-TCAGCAAA
1 AACTTCTTCTTCTAT-AACAAA
*
36040961 AACTTCCTCTTCTATAACAAA
1 AACTTCTTCTTCTATAACAAA
36040982 AACTTCCTTCT
1 AACTT-CTTCT
36040993 CAACAACAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.30, C:0.30, G:0.02, T:0.38
Consensus pattern (21 bp):
AACTTCTTCTTCTATAACAAA
Found at i:36041000 original size:21 final size:21
Alignment explanation
Indices: 36040957--36041011 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
36040947 TCTTCTTCAG
* *
36040957 CAAAAACTTCCTCTTCTATAA
1 CAAAAACTTCCTCTTCAACAA
36040978 CAAAAACTTCCT-TCTCAACAA
1 CAAAAACTTCCTCT-TCAACAA
36040999 C--AAACTTCCTCTT
1 CAAAAACTTCCTCTT
36041012 GATCAGCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 10 0.33
20 2 0.07
21 18 0.60
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.31
Consensus pattern (21 bp):
CAAAAACTTCCTCTTCAACAA
Found at i:36049163 original size:15 final size:15
Alignment explanation
Indices: 36049143--36049178 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
36049133 TGCTTTTTTT
**
36049143 ATTAATATTATTTCC
1 ATTAATATTATCACC
36049158 ATTAATATTATCACC
1 ATTAATATTATCACC
36049173 ATTAAT
1 ATTAAT
36049179 GTCTATCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAATATTATCACC
Found at i:36049194 original size:3 final size:3
Alignment explanation
Indices: 36049186--36049221 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
36049176 AATGTCTATC
36049186 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
36049222 GTGATTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:36049680 original size:18 final size:18
Alignment explanation
Indices: 36049648--36049694 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
36049638 AAAAAATATC
* *
36049648 GAAAATT-ATTTTACTTT
1 GAAAATTAAATTTACTTA
36049665 GAAAATTAAATTTACTTA
1 GAAAATTAAATTTACTTA
*
36049683 GAAAATAAAATT
1 GAAAATTAAATT
36049695 GTTATATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.40
Consensus pattern (18 bp):
GAAAATTAAATTTACTTA
Found at i:36051839 original size:67 final size:67
Alignment explanation
Indices: 36051699--36051843 Score: 200
Period size: 67 Copynumber: 2.2 Consensus size: 67
36051689 TCACCTGTGA
*
36051699 AAACATAGAGAGTCAGCCAGGACATTAAACATGGGGTATAATGTGTAAGACCATAGCTCGACTAT
1 AAACATAGAGAGTCAGCCAGGACATTAAACATGGGGTATAATGTGTAAGACCATAGCTCAACTAT
36051764 AG
66 AG
** ** * ** *
36051766 CTACATAGAGAGTCCTCTAGGACATTAAACATGGGGTATGCTGTGTAAGATCATAGCTCAACTAT
1 AAACATAGAGAGTCAGCCAGGACATTAAACATGGGGTATAATGTGTAAGACCATAGCTCAACTAT
*
36051831 GG
66 AG
36051833 AAACATAGAGA
1 AAACATAGAGA
36051844 ATCTGCAAGA
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (67 bp):
AAACATAGAGAGTCAGCCAGGACATTAAACATGGGGTATAATGTGTAAGACCATAGCTCAACTAT
AG
Found at i:36057686 original size:10 final size:10
Alignment explanation
Indices: 36057644--36057686 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
36057634 AAAAATAGTC
*
36057644 AAAATTAATC
1 AAAATTAATT
36057654 AAAATTAACTAT
1 AAAATTAA-T-T
36057666 AAAATTAATT
1 AAAATTAATT
*
36057676 AAAATTCATT
1 AAAATTAATT
36057686 A
1 A
36057687 TGTACATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 19 0.66
11 2 0.07
12 8 0.28
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:36070480 original size:20 final size:20
Alignment explanation
Indices: 36070457--36070499 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
36070447 GTAACCTTAT
* *
36070457 AAGAAATTTTGTAATGTTGA
1 AAGAAATTTAGTAATATTGA
**
36070477 AAGAGGTTTAGTAATATTGA
1 AAGAAATTTAGTAATATTGA
36070497 AAG
1 AAG
36070500 TGATCAATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (20 bp):
AAGAAATTTAGTAATATTGA
Found at i:36073764 original size:20 final size:20
Alignment explanation
Indices: 36073739--36073816 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
36073729 TCGTACGGGA
**
36073739 TTGCACTTTGGTGCCTCTAT
1 TTGCACTTCAGTGCCTCTAT
* *
36073759 TTGCACTTCAGTGCCTTTCT
1 TTGCACTTCAGTGCCTCTAT
*
36073779 ATGCACTTCAGTGCCTCTAT
1 TTGCACTTCAGTGCCTCTAT
**
36073799 TTGCACTTTGGTGCCTCT
1 TTGCACTTCAGTGCCTCT
36073817 GTTAGCAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.12, C:0.28, G:0.18, T:0.42
Consensus pattern (20 bp):
TTGCACTTCAGTGCCTCTAT
Found at i:36081098 original size:21 final size:20
Alignment explanation
Indices: 36081053--36081098 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
36081043 TGCCTAGGCT
36081053 GTGTGAAAGCTCACACACCC
1 GTGTGAAAGCTCACACACCC
*
36081073 ATGTGAAAGCT-ACACGTACCC
1 GTGTGAAAGCTCACAC--ACCC
36081094 GTGTG
1 GTGTG
36081099 GAGGAGACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 10 0.45
21 8 0.36
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (20 bp):
GTGTGAAAGCTCACACACCC
Found at i:36092384 original size:51 final size:50
Alignment explanation
Indices: 36092223--36092401 Score: 175
Period size: 51 Copynumber: 3.5 Consensus size: 50
36092213 AGTTGCTAGA
* * *
36092223 TCACATGTGTAGTACTATGTGCAGGCTACTTCGTGTACTG--GAATGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGATGAA-AAT-GG
* * * * * *** *
36092273 TCGCATGTGTAGTACTATGTGCAGGCTACAATGCGTACCGGAT-AGCTTTGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGATGA-AAATGG
*
36092324 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGATGAAAATGG
36092375 TCACATGTGTAGTACTATGTGCAGGCT
1 TCACATGTGTAGTACTATGTGCAGGCT
36092402 GCTATGTGAA
Statistics
Matches: 102, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
50 32 0.31
51 67 0.66
52 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGATGAAAATGG
Found at i:36096567 original size:49 final size:49
Alignment explanation
Indices: 36096511--36096604 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
36096501 ATTATGGGAA
* *
36096511 CACTCTTGATGGGATCTACCTATGTGAGTGAAAGTGTGGCCACTTTTAG
1 CACTCTTGATGGAATCTACCTATATGAGTGAAAGTGTGGCCACTTTTAG
*
36096560 CACTCTTGATGGAATCTACCTATATGAGTGGAAGTGTGGCCACTT
1 CACTCTTGATGGAATCTACCTATATGAGTGAAAGTGTGGCCACTT
36096605 CTAGGAGTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (49 bp):
CACTCTTGATGGAATCTACCTATATGAGTGAAAGTGTGGCCACTTTTAG
Found at i:36097644 original size:20 final size:19
Alignment explanation
Indices: 36097599--36097676 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 19
36097589 ACAAATTTGT
* *
36097599 AAATTACTAAATATCTTATG
1 AAATTACTAAATTTCTTA-C
* *
36097619 GAATTACTGAATTTCTTAC
1 AAATTACTAAATTTCTTAC
* * *
36097638 TAGATTATTATATTTCTTAC
1 -AAATTACTAAATTTCTTAC
36097658 AAATTTACTAAATTTCTTA
1 AAA-TTACTAAATTTCTTA
36097677 TGTTGAGGCA
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 2 0.05
20 42 0.95
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (19 bp):
AAATTACTAAATTTCTTAC
Found at i:36098137 original size:22 final size:23
Alignment explanation
Indices: 36098097--36098140 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
36098087 TAGAAAAGCT
*
36098097 AAAACAAAAATCAAGATTAAAAA
1 AAAACAAAAATCAACATTAAAAA
*
36098120 AAAACTAAAA-CAACATTAAAA
1 AAAACAAAAATCAACATTAAAA
36098141 TCCTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.73, C:0.11, G:0.02, T:0.14
Consensus pattern (23 bp):
AAAACAAAAATCAACATTAAAAA
Found at i:36104987 original size:53 final size:53
Alignment explanation
Indices: 36104907--36105013 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
36104897 AACTTTTCCC
36104907 TACAACTTTATCACTCTAAGTCATCGGGGCCGGAAGGGATGGATCCACGGTCA
1 TACAACTTTATCACTCTAAGTCATCGGGGCCGGAAGGGATGGATCCACGGTCA
*
36104960 TACAACTTTATCCCTCTAAGTCATCGGGGCCGGAAGGGATGGATCCACGGTCA
1 TACAACTTTATCACTCTAAGTCATCGGGGCCGGAAGGGATGGATCCACGGTCA
36105013 T
1 T
36105014 CTCATTACTA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.23
Consensus pattern (53 bp):
TACAACTTTATCACTCTAAGTCATCGGGGCCGGAAGGGATGGATCCACGGTCA
Found at i:36105790 original size:43 final size:42
Alignment explanation
Indices: 36105724--36105881 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 42
36105714 TTATTTCTAA
* *
36105724 AAACGCCGCTAAAGACGATGACCTTTAGCGGCGCTTTTCTCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTC-CAC
* ** * *
36105767 AAATGCTACTAAAGACCAAGACCTTTAGTGGCGCTTTAACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT-TCCAC
* * * * * *
36105810 AAACGCCGCTATAGAACATGAGCTTTAGTGGCGCTTTTCCTAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCC-AC
*
36105853 AAAGGCCGCTAAAGACCAAGACCTTTAGC
1 AAACGCCGCTAAAGACCAAGACCTTTAGC
36105882 AGCTGTAATG
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 2 0.02
43 88 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCAC
Found at i:36106398 original size:63 final size:63
Alignment explanation
Indices: 36106299--36106424 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
36106289 CGAAATCAGA
* *
36106299 AAGGGGAGGAGCCATATTTAGGGTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATCTCAAGCC
1 AAGGGGAGGAGCCATAGTTAGGGTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATCCCAAGCC
36106362 AAGGGGAGGAGCCATAGTTAGGGTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATCCCAAGCC
1 AAGGGGAGGAGCCATAGTTAGGGTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATCCCAAGCC
36106425 CCGTTTTTAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (63 bp):
AAGGGGAGGAGCCATAGTTAGGGTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATCCCAAGCC
Found at i:36106815 original size:29 final size:30
Alignment explanation
Indices: 36106756--36106813 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36106746 TCCGAGCCTT
*
36106756 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
36106786 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
36106814 AGAGTTGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:36107044 original size:13 final size:13
Alignment explanation
Indices: 36107026--36107056 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36107016 TTCCAGCAAC
36107026 TATGAATTTATTT
1 TATGAATTTATTT
36107039 TATGAATTTATTT
1 TATGAATTTATTT
*
36107052 GATGA
1 TATGA
36107057 TGATCCAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (13 bp):
TATGAATTTATTT
Found at i:36111807 original size:29 final size:28
Alignment explanation
Indices: 36111773--36111831 Score: 100
Period size: 29 Copynumber: 2.1 Consensus size: 28
36111763 AATGGAAATG
36111773 GGAAAGAGGCACTATGGATTTTGTATCT
1 GGAAAGAGGCACTATGGATTTTGTATCT
*
36111801 NGGAAAGAGTCACTATGGATTTTGTATCT
1 -GGAAAGAGGCACTATGGATTTTGTATCT
36111830 GG
1 GG
36111832 GTTACCGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.32
Consensus pattern (28 bp):
GGAAAGAGGCACTATGGATTTTGTATCT
Found at i:36113997 original size:13 final size:13
Alignment explanation
Indices: 36113979--36114010 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36113969 TTTCCAGCAA
36113979 TTATGAATTTATT
1 TTATGAATTTATT
36113992 TTATGAATTTATT
1 TTATGAATTTATT
*
36114005 TGATGA
1 TTATGA
36114011 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:36114235 original size:50 final size:50
Alignment explanation
Indices: 36114105--36114346 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
36114095 ATTTGGGTAA
* * *
36114105 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* *
36114161 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGCCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
36114211 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
36114261 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
36114311 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
36114347 TTTGGCATGT
Statistics
Matches: 164, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 90 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:36114299 original size:100 final size:103
Alignment explanation
Indices: 36114105--36114354 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
36114095 ATTTGGGTAA
36114105 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
36114170 CTGTAAGACCATGTCTGGGACATGCCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGCCATGGGCACC-ATCACG
* * *
36114211 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
*
36114273 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGCCATGGGCACCATCACG
* *
36114311 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
36114355 GTTATTATCA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 39 0.30
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGCCATGGGCACCATCACG
Found at i:36115409 original size:43 final size:42
Alignment explanation
Indices: 36115357--36115457 Score: 175
Period size: 43 Copynumber: 2.4 Consensus size: 42
36115347 CGCTTTTTCC
36115357 CACAAACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTACT
1 CACAAACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTA-T
* *
36115400 CACAAACGCCACTAAAGAACATGATCTTTAGCGACGCTTTAT
1 CACAAACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTAT
36115442 CACAAACGCCGCTAAA
1 CACAAACGCCGCTAAA
36115458 AGTACAATTC
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 16 0.29
43 39 0.71
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.21
Consensus pattern (42 bp):
CACAAACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTAT
Found at i:36115470 original size:42 final size:41
Alignment explanation
Indices: 36115357--36115482 Score: 157
Period size: 43 Copynumber: 3.0 Consensus size: 41
36115347 CGCTTTTTCC
*
36115357 CACAAACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTACT
1 CACAAACGCCGCTAAAGAACAT-ATCTTTAGCGACGCTTTA-T
*
36115400 CACAAACGCCACTAAAGAACATGATCTTTAGCGACGCTTTAT
1 CACAAACGCCGCTAAAGAACAT-ATCTTTAGCGACGCTTTAT
* *
36115442 CACAAACGCCGCTAAAAGTACA-ATTCTTTAGCGGCG-TTTAT
1 CACAAACGCCGCT-AAAGAACATA-TCTTTAGCGACGCTTTAT
36115483 ATAAAAACGC
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
41 6 0.08
42 24 0.32
43 46 0.61
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (41 bp):
CACAAACGCCGCTAAAGAACATATCTTTAGCGACGCTTTAT
Found at i:36117588 original size:40 final size:40
Alignment explanation
Indices: 36117523--36117599 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
36117513 ACATCAACAC
* *
36117523 TTCAATATTTAATATGTAATGAATTATCAAAAATCAAAAT
1 TTCAATATTTAATATGCAATGAATTAACAAAAATCAAAAT
*
36117563 TTCAATAATTT-ATATGCAA-GAAATTAACACAAATCAA
1 TTCAAT-ATTTAATATGCAATG-AATTAACAAAAATCAA
36117600 TCTTACAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 1 0.03
40 27 0.84
41 4 0.12
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (40 bp):
TTCAATATTTAATATGCAATGAATTAACAAAAATCAAAAT
Found at i:36117773 original size:86 final size:85
Alignment explanation
Indices: 36117675--36117862 Score: 252
Period size: 86 Copynumber: 2.2 Consensus size: 85
36117665 GGTATTAGGG
* * * * *
36117675 CTAAATCTTCAATTTCTATAACGATTTATATGCAACAAATTAACAAAAATCAATGGTTCAAGTTC
1 CTAAATTTTCAATTT-TATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTTC
* *
36117740 ATGTATTTACCAAAAATCAGA
65 ATGCATTTACCAAAAAGCAGA
* *
36117761 CT-GATTTGTCAATATTTATAACAACTTATATGCAACAAATTAGCAAAAATAAATGGATCAAGTT
1 CTAAATTT-TCAAT-TTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTT
*
36117825 CATGCATTTACCAACAAGCAGA
64 CATGCATTTACCAAAAAGCAGA
36117847 CTAAATTTTCAATTTT
1 CTAAATTTTCAATTTT
36117863 CAATTTTTAA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
85 6 0.07
86 76 0.86
87 6 0.07
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (85 bp):
CTAAATTTTCAATTTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTTCA
TGCATTTACCAAAAAGCAGA
Found at i:36118125 original size:86 final size:87
Alignment explanation
Indices: 36117953--36118127 Score: 208
Period size: 86 Copynumber: 2.0 Consensus size: 87
36117943 TCATCATTTC
* * * * * * *
36117953 AACAATTTACATGCAAAAAATTAGCAAAAATTAACAGTTCATGTATAATGTATTTACCAAAAACC
1 AACAATTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACC
* *
36118018 GGACCAACTTGTCAATTTTTAT
66 AGACCAAATTGTCAATTTTTAT
* * * *
36118040 AACATTTTAAATGCAACAAATTAACACAAATTAACAATACAAGT-TCATATATTCACCAAAAACC
1 AACAATTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACC
* *
36118104 AGACTAAATTTTCAATTTTTAT
66 AGACCAAATTGTCAATTTTTAT
36118126 AA
1 AA
36118128 AATAAGAGGA
Statistics
Matches: 73, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
86 37 0.51
87 36 0.49
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (87 bp):
AACAATTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACC
AGACCAAATTGTCAATTTTTAT
Found at i:36120861 original size:20 final size:19
Alignment explanation
Indices: 36120825--36120876 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
36120815 TTTTAAATAA
36120825 ATAAT-TTTTGAAAAATTA-
1 ATAATATTTT-AAAAATTAG
36120843 AGTAATATTTTAAAGAATTAG
1 A-TAATATTTTAAA-AATTAG
36120864 ATAA-ATTTTAAAA
1 ATAATATTTTAAAA
36120877 TTTTTATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.07
19 15 0.50
20 12 0.40
21 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (19 bp):
ATAATATTTTAAAAATTAG
Found at i:36121177 original size:10 final size:10
Alignment explanation
Indices: 36121129--36121189 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
36121119 AAAATAAAAG
36121129 TTTAAAATCTT
1 TTTAAAATC-T
* *
36121140 TTTTAAATTT
1 TTTAAAATCT
**
36121150 TTTAAAAAAT
1 TTTAAAATCT
36121160 TTTAAAATCT
1 TTTAAAATCT
36121170 TTTAAAATTCAT
1 TTTAAAA-TC-T
36121182 TTTAAAAT
1 TTTAAAAT
36121190 TTTAAATCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 23 0.56
11 10 0.24
12 8 0.20
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:36121186 original size:12 final size:12
Alignment explanation
Indices: 36121158--36121190 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
36121148 TTTTTAAAAA
36121158 ATTTTAAAA-TC
1 ATTTTAAAATTC
36121169 -TTTTAAAATTC
1 ATTTTAAAATTC
36121180 ATTTTAAAATT
1 ATTTTAAAATT
36121191 TTAAATCACG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.40
11 2 0.10
12 10 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTAAAATTC
Found at i:36121189 original size:30 final size:29
Alignment explanation
Indices: 36121123--36121195 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
36121113 ATTATAAAAA
* *
36121123 TAAAAGTTTAAAATCTTTTTTAAATTTTT
1 TAAAATTTTAAAATCTTTTTAAAATTTTT
36121152 TAAAAAATTTTAAAATC-TTTTAAAATTCATTT
1 T--AAAATTTTAAAATCTTTTTAAAATT--TTT
36121184 TAAAATTTTAAA
1 TAAAATTTTAAA
36121196 TCACGTAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 1 0.03
30 20 0.53
31 13 0.34
32 4 0.11
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (29 bp):
TAAAATTTTAAAATCTTTTTAAAATTTTT
Found at i:36122144 original size:21 final size:21
Alignment explanation
Indices: 36122097--36122137 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36122087 TAACCTGGCC
*
36122097 CTTAACCCATAAACCCTAAAT
1 CTTAAACCATAAACCCTAAAT
* *
36122118 CCTAAACCATTAACCCTAAA
1 CTTAAACCATAAACCCTAAA
36122138 CTTTAAAACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (21 bp):
CTTAAACCATAAACCCTAAAT
Found at i:36122197 original size:22 final size:23
Alignment explanation
Indices: 36122146--36122198 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 23
36122136 AACTTTAAAA
*
36122146 CCCTAAA-CTCATAACCCTCAGC
1 CCCTAAACCTCATAACCCTCAAC
36122168 CCCT-AACCTC-TAACCC-CTAAC
1 CCCTAAACCTCATAACCCTC-AAC
36122189 CCCTAAACCT
1 CCCTAAACCT
36122199 TATTTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.04
21 14 0.52
22 12 0.44
ACGTcount: A:0.30, C:0.49, G:0.02, T:0.19
Consensus pattern (23 bp):
CCCTAAACCTCATAACCCTCAAC
Found at i:36122843 original size:41 final size:42
Alignment explanation
Indices: 36122798--36123072 Score: 246
Period size: 41 Copynumber: 6.7 Consensus size: 42
36122788 ATTTGTTTTT
*
36122798 GCGGCGCTT-TACAAAAAATGCCGCTAAAGGTCTGCGCATTA
1 GCGGCGCTTCTACAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * * *
36122839 GCGGCGCTTC-ATAAAAAACGCCGCTACAGGTTTGCACATTA
1 GCGGCGCTTCTACAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * * *
36122880 GCGGCGATTCCTTAC---AAACGCTGCTAAAGGTCAGTGCATTA
1 GCGGCGCTT-C-TACAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * *
36122921 GTGGCGCTTCCT-C-AAAAACACCGCTAAAGGTCTGCGTATTA
1 GCGGCGCTT-CTACAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * * *
36122962 GCGACGCTTCT-TAAAAAACACCGCTAAAGGTTTGCGCATTA
1 GCGGCGCTTCTACAAAAAACGCCGCTAAAGGTCTGCGCATTA
* **
36123003 GCGGCGCTTCTA-GAAAAACGCCGCTAAAGGTCCACGCATTA
1 GCGGCGCTTCTACAAAAAACGCCGCTAAAGGTCTGCGCATTA
* ** *
36123044 GCGACGCTTCT-TGAAAAACGCCACTAAAG
1 GCGGCGCTTCTACAAAAAACGCCGCTAAAG
36123073 ACCCACAAGG
Statistics
Matches: 192, Mismatches: 33, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 3 0.02
41 186 0.97
42 1 0.01
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (42 bp):
GCGGCGCTTCTACAAAAAACGCCGCTAAAGGTCTGCGCATTA
Found at i:36123042 original size:123 final size:123
Alignment explanation
Indices: 36122818--36123072 Score: 325
Period size: 123 Copynumber: 2.1 Consensus size: 123
36122808 ACAAAAAATG
* * *
36122818 CCGCTAAAGGTCTGCGCATTAGCGGCGCTTCATAAAAAACGCCGCTACAGGTTTGCACATTAGCG
1 CCGCTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACACCGCTAAAGGTTTGCACATTAGCG
* * * * * *
36122883 GCGATTCCTTACAAACGCTGCTAAAGGTCAGTGCATTAGTGGCGCTTCCTCAAAAACA
66 GCGATTCCTGAAAAACGCCGCTAAAGGTCAGCGCATTAGCGACGCTTCCTCAAAAACA
* * *
36122941 CCGCTAAAGGTCTGCGTATTAGCGACGCTTCTTAAAAAACACCGCTAAAGGTTTGCGCATTAGCG
1 CCGCTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACACCGCTAAAGGTTTGCACATTAGCG
* * * *
36123006 GCGCTT-CTAGAAAAACGCCGCTAAAGGTCCA-CGCATTAGCGACGCTTCTTGAAAAACG
66 GCGATTCCT-GAAAAACGCCGCTAAAGGT-CAGCGCATTAGCGACGCTTCCTCAAAAACA
*
36123064 CCACTAAAG
1 CCGCTAAAG
36123073 ACCCACAAGG
Statistics
Matches: 113, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
122 2 0.02
123 109 0.96
124 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (123 bp):
CCGCTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACACCGCTAAAGGTTTGCACATTAGCG
GCGATTCCTGAAAAACGCCGCTAAAGGTCAGCGCATTAGCGACGCTTCCTCAAAAACA
Found at i:36123426 original size:18 final size:18
Alignment explanation
Indices: 36123392--36123440 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
36123382 CCAAAAAATA
*
36123392 TTGAAAATT-ATTTTACT
1 TTGAAAATTAAATTTACT
36123409 TTGAAAATTAAATTTACT
1 TTGAAAATTAAATTTACT
* *
36123427 TAGAAAATAAAATT
1 TTGAAAATTAAATT
36123441 GTTATATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 9 0.32
18 19 0.68
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (18 bp):
TTGAAAATTAAATTTACT
Found at i:36125554 original size:18 final size:18
Alignment explanation
Indices: 36125499--36125563 Score: 69
Period size: 18 Copynumber: 3.4 Consensus size: 18
36125489 CCGAATATAA
36125499 TAAATATATATTTTTATTTTT
1 TAAA-ATAT-TTTTTA-TTTT
*
36125520 TAAAAT-TTTAATATATTTT
1 TAAAATATTT--TTTATTTT
36125539 TAAAATATTTTTTATTTT
1 TAAAATATTTTTTATTTT
36125557 TAAAATA
1 TAAAATA
36125564 AATTTTTGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 16 0.41
19 11 0.28
20 8 0.21
21 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TAAAATATTTTTTATTTT
Found at i:36125569 original size:19 final size:18
Alignment explanation
Indices: 36125533--36125570 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
36125523 AATTTTAATA
*
36125533 TATTTTTAAAATATTTTT
1 TATTTTTAAAATAATTTT
36125551 TATTTTTAAAATAAATTTT
1 TATTTTTAAAAT-AATTTT
36125570 T
1 T
36125571 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTTTAAAATAATTTT
Found at i:36127396 original size:21 final size:20
Alignment explanation
Indices: 36127359--36127397 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
36127349 TAATACAAAT
* *
36127359 AGATAATTTTTTTTTTAAAA
1 AGATAATTTATTATTTAAAA
36127379 AGATAAATTTATTATTTAA
1 AGAT-AATTTATTATTTAA
36127398 TTTACTGTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
AGATAATTTATTATTTAAAA
Found at i:36130318 original size:297 final size:293
Alignment explanation
Indices: 36129755--36130319 Score: 631
Period size: 297 Copynumber: 1.9 Consensus size: 293
36129745 CATTACTAAT
* * *
36129755 ATATACAATCGATGAAGGTAATAAGTTGTTGTATTAAAATAAAAATATATAAAACACATTAAAAT
1 ATATACAATCAATGAAGGTAATAAATTGTTATATTAAAATAAAAATATATAAAACACATTAAAAT
* * * ** *
36129820 GAATCTGATTGAGCGATAAATTTAATATTTTACCAATTAAATTGGTGTGGGTTCAAATTCCCCCA
66 AAATCTGATTGAGAGATAAATTTAAAATTTTACCAATTAAATTGGCATAGGTTCAAATTCCCCCA
* * * * **
36129885 TTTGTATATTTTTATTGTTTTTTAATTAAAAAGATTAAAATACCCTCGAAAAATATAACTTATTT
131 TTTGCACAGTTTTATTGTTTTTTAATTAAAAAGATTAAAATACCATCGAAAAATATAACTTAAAT
* * * *** *
36129950 TAAATACAGAATGTTATTTTTGTAATTTACCTAACTGAGTTGGGGCTTGGTTGACTAGTGATACC
196 TAAATACAGAATGTTATTTTAGTAATTTACCTAACGGAATTGGGGCTCAATTGACTAGTGACACC
36130015 AACTCAGTTAGGGGTTTATTAATAGTAATATAG
261 AACTCAGTTAGGGGTTTATTAATAGTAATATAG
* **
36130048 ATATACAATCAATGAAGGTAATAAATT-TTACATATTAAAATAAAAATATATAAAATATGTTAAA
1 ATATACAATCAATGAAGGTAATAAATTGTT--ATATTAAAATAAAAATATATAAAACACATTAAA
* * *
36130112 ATAAAGTTTTAGTTGA-ATAGTAAATTTAAAATTTTACCAATCT-AATTGGCATAGGTTCAAA-T
64 ATAAA-TCTGA-TTGAGAGA-TAAATTTAAAATTTTACCAAT-TAAATTGGCATAGGTTCAAATT
* * * * *
36130174 CCGTGCCATTTGCACAGTTTTATTGTTTTTTTAATTAAAAATATTAAAGTACCATTGAATAATAT
125 CC--CCCATTTGCACAGTTTTATTG-TTTTTTAATTAAAAAGATTAAAATACCATCGAAAAATAT
* ** *
36130239 AACTTAAATTAAATA-GGAA-GATTATTTTAGTAATTTTTCTAACGGAATTGGTG-TCCAATTGA
187 AACTTAAATTAAATACAGAATG-TTATTTTAGTAATTTACCTAACGGAATTGGGGCT-CAATTGA
* *
36130301 CTTGTGACACTAACTCAGT
250 CTAGTGACACCAACTCAGT
36130320 CAAAGTTTTT
Statistics
Matches: 222, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
292 2 0.01
293 25 0.11
294 33 0.15
295 7 0.03
296 41 0.18
297 67 0.30
298 47 0.21
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (293 bp):
ATATACAATCAATGAAGGTAATAAATTGTTATATTAAAATAAAAATATATAAAACACATTAAAAT
AAATCTGATTGAGAGATAAATTTAAAATTTTACCAATTAAATTGGCATAGGTTCAAATTCCCCCA
TTTGCACAGTTTTATTGTTTTTTAATTAAAAAGATTAAAATACCATCGAAAAATATAACTTAAAT
TAAATACAGAATGTTATTTTAGTAATTTACCTAACGGAATTGGGGCTCAATTGACTAGTGACACC
AACTCAGTTAGGGGTTTATTAATAGTAATATAG
Found at i:36131176 original size:21 final size:21
Alignment explanation
Indices: 36131114--36131178 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
36131104 CCTGAGGTTC
*
36131114 AAGGTTTG-GGTTTAGAATTT
1 AAGGTTTGAGGTTTAGGATTT
*
36131134 AAGGTTTTGA-GTTCGAGG-TTT
1 AAGG-TTTGAGGTT-TAGGATTT
36131155 AAGGTTTGAGGTTTAGGATTT
1 AAGGTTTGAGGTTTAGGATTT
36131176 AAG
1 AAG
36131179 AATTTGGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
20 12 0.32
21 23 0.62
22 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.32, T:0.42
Consensus pattern (21 bp):
AAGGTTTGAGGTTTAGGATTT
Found at i:36132330 original size:30 final size:30
Alignment explanation
Indices: 36132289--36132347 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
36132279 GGGGTTATAC
* * *
36132289 GGCCATGTGGCCATTCTGTGTTACTCACAT
1 GGCCATGTGGCCATGCCGTGTGACTCACAT
*
36132319 GGCCGTGTGGCCATGCCGTGTGACTCACA
1 GGCCATGTGGCCATGCCGTGTGACTCACA
36132348 CTACCAAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.27
Consensus pattern (30 bp):
GGCCATGTGGCCATGCCGTGTGACTCACAT
Found at i:36135867 original size:17 final size:17
Alignment explanation
Indices: 36135841--36135881 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
36135831 ATTAGAATGT
*
36135841 AAAAATTAAACTAAAAAC
1 AAAAATAAAAC-AAAAAC
*
36135859 AAAAATAAAACAAAAAT
1 AAAAATAAAACAAAAAC
36135876 AAAAAT
1 AAAAAT
36135882 GGCTAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAAATAAAACAAAAAC
Found at i:36135868 original size:11 final size:11
Alignment explanation
Indices: 36135854--36135879 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
36135844 AATTAAACTA
36135854 AAAACAAAAAT
1 AAAACAAAAAT
36135865 AAAACAAAAAT
1 AAAACAAAAAT
36135876 AAAA
1 AAAA
36135880 ATGGCTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAACAAAAAT
Found at i:36139397 original size:151 final size:152
Alignment explanation
Indices: 36139223--36139510 Score: 433
Period size: 151 Copynumber: 1.9 Consensus size: 152
36139213 TTTTAAACAA
* * *
36139223 ATTTTTATTTTTCAAAATGTAAACTTT-T-TTATTTTATTAAAAAAACACTGTTTTTCTTAAAGA
1 ATTTTTATTATTCAAAATCTAAACTTTATCTT-TTTT-TTAAAAAAA-ACTATTTTTCTTAAAGA
* * *
36139286 TTAAAGCTTTTATTTTGAAGTAGTT-AAAAAAAATCAAAAC--TGTTTTTTAGAAATTTAAAATT
63 TTAAAGCTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTG-TTTTTAAAAATTTAAAATT
36139348 TCCTTTAAAATAACTAAAAAAAATAG
127 TCCTTTAAAATAACTAAAAAAAATAG
*
36139374 ATTTTTATTATTCAAAATCTAAACTTTATCTTTTTTTTAAAAAAAATTATTTTTCTTAAAGATTA
1 ATTTTTATTATTCAAAATCTAAACTTTATCTTTTTTTTAAAAAAAACTATTTTTCTTAAAGATTA
*
36139439 AAGCTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCTT
66 AAGCTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCCT
36139504 TTAAAAT
131 TTAAAAT
36139511 CTTTTACTTT
Statistics
Matches: 124, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
150 38 0.31
151 49 0.40
152 33 0.27
153 4 0.03
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.44
Consensus pattern (152 bp):
ATTTTTATTATTCAAAATCTAAACTTTATCTTTTTTTTAAAAAAAACTATTTTTCTTAAAGATTA
AAGCTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCCT
TTAAAATAACTAAAAAAAATAG
Found at i:36139523 original size:69 final size:69
Alignment explanation
Indices: 36139442--36139579 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
36139432 AAGATTAAAG
36139442 CTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCTTTTA
1 CTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCTTTTA
36139507 AAAT
66 AAAT
*
36139511 CTTTTACTTTGAAATAGTTGAGAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCTTTTA
1 CTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCTTTTA
36139576 AAAT
66 AAAT
36139580 AAATATTAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (69 bp):
CTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTCTTTTA
AAAT
Found at i:36140446 original size:39 final size:39
Alignment explanation
Indices: 36140387--36140465 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
36140377 TGAAAAGTAG
*
36140387 ACTAGAAAAGTAAACGGACCTCCACACCTAGGCCTCTAA
1 ACTAGAAAAGTAAACAGACCTCCACACCTAGGCCTCTAA
* *
36140426 ACTAGAAAAGTAAACAGACCTCCACACCTGGGTCTCTAA
1 ACTAGAAAAGTAAACAGACCTCCACACCTAGGCCTCTAA
36140465 A
1 A
36140466 TGCAATCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.39, C:0.29, G:0.15, T:0.16
Consensus pattern (39 bp):
ACTAGAAAAGTAAACAGACCTCCACACCTAGGCCTCTAA
Found at i:36140490 original size:42 final size:42
Alignment explanation
Indices: 36140391--36140850 Score: 624
Period size: 42 Copynumber: 11.1 Consensus size: 42
36140381 AAGTAGACTA
* * * * *
36140391 GAAAAGTAAACGGACCTCCACACCTAGGCCTCTAAA--CTA-
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* **
36140430 GAAAAGTAAACAGACCTCCACACCTGGGTCTCTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* *
36140472 CAAAAGTGAATGGACCTCCACACCTTGGTCTCTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* *
36140514 GAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* *
36140556 GAAAAGTGAAT-AACCTCCACACCTGGGTCTCTAGATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* * *
36140597 GAAAAGTGAATGGACCTTCACACCTGGGTCTTTAAATGTAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
*
36140639 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* * *
36140681 GAAAAGTGAATGGACCTTCACACCTGGGTCTTTAAATGTAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
*
36140723 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAGATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* ** * *
36140765 GAAAAGTGAATCGACCTCTGCACCTAGGTCTTTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* *
36140807 GAAAAGTGAAT-AACCTCCACACCTGGGTCTCTAGATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
36140848 GAA
1 GAA
36140851 CGTTTTCCTT
Statistics
Matches: 374, Mismatches: 43, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
39 33 0.09
41 68 0.18
42 273 0.73
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.23
Consensus pattern (42 bp):
GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
Found at i:36141276 original size:8 final size:8
Alignment explanation
Indices: 36141265--36141297 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
36141255 ATTTTTTTGG
36141265 TTTCTTTT
1 TTTCTTTT
36141273 TTTCTTTT
1 TTTCTTTT
*
36141281 TCT-TTTT
1 TTTCTTTT
36141288 TTTCTTTT
1 TTTCTTTT
36141296 TT
1 TT
36141298 CTTGATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTCTTTT
Found at i:36141295 original size:14 final size:14
Alignment explanation
Indices: 36141265--36141296 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
36141255 ATTTTTTTGG
36141265 TTTCTTTTTTTCTT
1 TTTCTTTTTTTCTT
36141279 TTTCTTTTTTTTCTT
1 TTTC-TTTTTTTCTT
36141294 TTT
1 TTT
36141297 TCTTGATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTCTTTTTTTCTT
Found at i:36143881 original size:51 final size:51
Alignment explanation
Indices: 36143803--36143941 Score: 147
Period size: 51 Copynumber: 2.7 Consensus size: 51
36143793 TGCCTATAAA
* *
36143803 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATA-GATAATGGT
1 CACATGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGA-AGGAT-ATGGT
* * * * * *
36143854 CACATGTGTAGTAATATGTGCATGCTACTATGTGTACCGGAAGGCTTTGGT
1 CACATGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGAAGGATATGGT
* * *
36143905 CGCGTGTGTAGTACTATGTGAAAGCTACTACGTGTAT
1 CACATGTGTAGTACTATGTGCAAGCTACTACGTGTAT
36143942 TGAATGATAA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
51 68 0.94
52 4 0.06
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (51 bp):
CACATGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGAAGGATATGGT
Found at i:36170289 original size:16 final size:15
Alignment explanation
Indices: 36170262--36170295 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
36170252 ATAACTAGTA
*
36170262 TATAATTATATTTAT
1 TATAATTATATTAAT
36170277 TATAATATATATTAAT
1 TATAAT-TATATTAAT
36170293 TAT
1 TAT
36170296 TATCAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:36170999 original size:25 final size:26
Alignment explanation
Indices: 36170957--36171010 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
36170947 TTCTCCTAAA
**
36170957 TTTCAATTTTATTTAATTATTTAAT-T
1 TTTCAATTTTATAGAATTA-TTAATAT
36170983 TTTCAA-TTTATAGAATTATTAATAT
1 TTTCAATTTTATAGAATTATTAATAT
36171008 TTT
1 TTT
36171011 ATACTGATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 14 0.56
26 6 0.24
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (26 bp):
TTTCAATTTTATAGAATTATTAATAT
Found at i:36176779 original size:41 final size:41
Alignment explanation
Indices: 36176734--36176926 Score: 296
Period size: 41 Copynumber: 4.7 Consensus size: 41
36176724 GGTTTTAAAA
*
36176734 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
36176775 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
36176816 CCTAGCAGGCTAAGTGCTGGTGATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
36176857 CCTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
36176898 CCTAACAGGGCTAAGTGCCAGTGGATCTG
1 CCTAGCA-GGCTAAGTGCCGGT-GATCTG
36176927 TTTAAATTAA
Statistics
Matches: 138, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 120 0.87
42 12 0.09
43 6 0.04
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:36181530 original size:32 final size:28
Alignment explanation
Indices: 36181494--36181568 Score: 91
Period size: 27 Copynumber: 2.6 Consensus size: 28
36181484 CATAATAATT
36181494 CATTTAATTCAAATCATATCATCTGTAATTTC
1 CATTTAATTC-AA-CATA-C-TCTGTAATTTC
*
36181526 CATTTAATTC-ACGTACTCTGTAATTTC
1 CATTTAATTCAACATACTCTGTAATTTC
36181553 CATTTAATTC-ACATAC
1 CATTTAATTCAACATAC
36181569 AATTCAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
27 26 0.63
28 1 0.02
29 3 0.07
30 1 0.02
32 10 0.24
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (28 bp):
CATTTAATTCAACATACTCTGTAATTTC
Found at i:36181577 original size:27 final size:27
Alignment explanation
Indices: 36181517--36181579 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
36181507 TCATATCATC
* **
36181517 TGTAATTTCCATTTAATTCACGTACTC
1 TGTAATTTCCATTTAATTCACATACAA
36181544 TGTAATTTCCATTTAATTCACATACAA
1 TGTAATTTCCATTTAATTCACATACAA
36181571 T-TCAATTTC
1 TGT-AATTTC
36181580 ATTAAGTTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (27 bp):
TGTAATTTCCATTTAATTCACATACAA
Found at i:36183202 original size:51 final size:50
Alignment explanation
Indices: 36183137--36183331 Score: 230
Period size: 51 Copynumber: 3.9 Consensus size: 50
36183127 CAATGATGTT
* * * *
36183137 CGATTCACATAGTAGCCTACTCATAGTACTACACATGTGACCATTACCATC
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * *
36183188 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
36183239 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
* *
36183289 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCA
36183332 CCACTTTCAC
Statistics
Matches: 122, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.34
51 77 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (50 bp):
CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:36183320 original size:101 final size:101
Alignment explanation
Indices: 36183144--36183328 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
36183134 GTTCGATTCA
* *
36183144 CATAGTAGCCTACTCATAGTACTACACATGTGACCATTACCATCCGATACACATAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTAGCCTGCA
36183209 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
* * * *
36183246 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCGATACACATAGTAGCCTGCA
36183310 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
36183329 CCACCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 32 0.42
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:36188314 original size:15 final size:15
Alignment explanation
Indices: 36188294--36188325 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36188284 GTGCTTTATT
36188294 GTTGAATGTATGATC
1 GTTGAATGTATGATC
36188309 GTTGAATGTATGATC
1 GTTGAATGTATGATC
36188324 GT
1 GT
36188326 ATCACTGTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.28, T:0.41
Consensus pattern (15 bp):
GTTGAATGTATGATC
Found at i:36188441 original size:34 final size:34
Alignment explanation
Indices: 36188398--36188467 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
36188388 TTCAAGAGGA
*
36188398 AAGTTAGAACACCAACACAAAAATCACAACTAAG
1 AAGTTAGAACACCAAAACAAAAATCACAACTAAG
* *
36188432 AAGTTAGAACACCAAAACTAGAATCACAACTAAG
1 AAGTTAGAACACCAAAACAAAAATCACAACTAAG
36188466 AA
1 AA
36188468 ATAAAAGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.56, C:0.21, G:0.10, T:0.13
Consensus pattern (34 bp):
AAGTTAGAACACCAAAACAAAAATCACAACTAAG
Found at i:36190159 original size:23 final size:23
Alignment explanation
Indices: 36190125--36190175 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
36190115 AAGGCAATGC
*
36190125 TGTAATATCCCGAAAATTACTAT
1 TGTAATACCCCGAAAATTACTAT
*
36190148 TGTAATACCCCGAAAATTATTAT
1 TGTAATACCCCGAAAATTACTAT
*
36190171 AGTAA
1 TGTAA
36190176 GAAAGCATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAT
Found at i:36205385 original size:9 final size:9
Alignment explanation
Indices: 36205371--36205397 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
36205361 TAAGACTAAA
36205371 GATGAGCAT
1 GATGAGCAT
36205380 GATGAGCAT
1 GATGAGCAT
36205389 GATGAGCAT
1 GATGAGCAT
36205398 CTTAGAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22
Consensus pattern (9 bp):
GATGAGCAT
Found at i:36209794 original size:18 final size:20
Alignment explanation
Indices: 36209758--36209795 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
36209748 GGATAATATC
*
36209758 ATATTAAAATTAGATTAAAT
1 ATATTAAAATAAGATTAAAT
36209778 ATATT-AAATAAGA-TAAAT
1 ATATTAAAATAAGATTAAAT
36209796 TAAATAGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 7 0.41
20 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
ATATTAAAATAAGATTAAAT
Found at i:36209993 original size:15 final size:15
Alignment explanation
Indices: 36209963--36209996 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36209953 TTAACTGCTT
**
36209963 AAAAATAAGTGTTGA
1 AAAAATAAGTACTGA
36209978 AAAAATAAGTACTGA
1 AAAAATAAGTACTGA
36209993 AAAA
1 AAAA
36209997 TTTAGTCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.15, T:0.21
Consensus pattern (15 bp):
AAAAATAAGTACTGA
Found at i:36211644 original size:24 final size:24
Alignment explanation
Indices: 36211616--36211661 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
36211606 ACCAAAATGA
36211616 CCACATACATATATCAACATAAAG
1 CCACATACATATATCAACATAAAG
36211640 CCACATACATATATCAACATAA
1 CCACATACATATATCAACATAA
36211662 CAACCAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.50, C:0.26, G:0.02, T:0.22
Consensus pattern (24 bp):
CCACATACATATATCAACATAAAG
Found at i:36211671 original size:24 final size:24
Alignment explanation
Indices: 36211615--36211672 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
36211605 TACCAAAATG
36211615 ACCACATACATATATCAACATAAA
1 ACCACATACATATATCAACATAAA
*
36211639 GCCACATACATATATCAACATAACA
1 ACCACATACATATATCAACATAA-A
36211664 ACCA-ATACA
1 ACCACATACA
36211673 AATCCAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.52, C:0.28, G:0.02, T:0.19
Consensus pattern (24 bp):
ACCACATACATATATCAACATAAA
Found at i:36216665 original size:28 final size:28
Alignment explanation
Indices: 36216610--36216666 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
36216600 TAATTTAATA
*
36216610 AATTTATTAATATGATATTTGTACTTTT
1 AATTTATTAATATGATACTTGTACTTTT
*
36216638 AATTTATTTAATAT-AGTACTTGTATTTTT
1 AATTTA-TTAATATGA-TACTTGTACTTTT
36216667 CTTTTGGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.58
Consensus pattern (28 bp):
AATTTATTAATATGATACTTGTACTTTT
Found at i:36219542 original size:23 final size:23
Alignment explanation
Indices: 36219515--36219561 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
36219505 TTGAAGGACC
36219515 TTGAAAAGACCTTGAAAAAGATA
1 TTGAAAAGACCTTGAAAAAGATA
36219538 TTGAAAAGACCTTGAAAAAGATA
1 TTGAAAAGACCTTGAAAAAGATA
36219561 T
1 T
36219562 AGAATTCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.17, T:0.23
Consensus pattern (23 bp):
TTGAAAAGACCTTGAAAAAGATA
Found at i:36219558 original size:12 final size:11
Alignment explanation
Indices: 36219511--36219555 Score: 63
Period size: 11 Copynumber: 4.0 Consensus size: 11
36219501 AAGTTTGAAG
36219511 GACCTTGAAAA
1 GACCTTGAAAA
36219522 GACCTTGAAAAA
1 GACCTTG-AAAA
**
36219534 GATATTGAAAA
1 GACCTTGAAAA
36219545 GACCTTGAAAA
1 GACCTTGAAAA
36219556 AGATATAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (11 bp):
GACCTTGAAAA
Done.