genome.fa.s15.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  123  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36562199--36562237	17	2.2	18	86	13	55	74	2	17	5	1.12
36577609--36577649	5	8.2	5	100	0	82	41	19	0	39	1.52
36578372--36578473	52	2.0	52	88	0	150	29	21	12	36	1.91
36581992--36582025	16	2.1	17	88	5	52	79	0	11	8	0.94
36586139--36586276	43	3.3	42	77	8	145	26	25	16	31	1.97
36588461--36588498	14	2.7	15	88	8	53	23	23	21	31	1.98
36599471--36599529	15	3.8	16	86	10	86	32	16	11	38	1.86
36600504--36600554	21	2.4	21	83	9	59	43	27	7	21	1.80
36611441--36611648	67	3.1	67	97	0	389	37	6	18	36	1.78
36620758--36620830	34	2.1	34	94	0	128	31	23	20	24	1.98
36626066--36626113	17	2.9	17	75	3	53	45	10	16	27	1.80
36631824--36631923	50	2.0	50	86	3	139	33	23	22	22	1.98
36640807--36640846	19	2.1	19	90	9	64	30	10	10	50	1.69
36653972--36654101	58	2.2	58	83	9	156	42	2	6	49	1.40
36657937--36657996	31	1.9	31	96	0	111	35	21	23	20	1.96
36657973--36658011	19	2.1	19	95	0	69	35	23	20	20	1.96
36658143--36658190	19	2.5	19	80	13	53	33	10	16	39	1.83
36661028--36661061	13	2.8	12	82	8	50	23	0	2	73	0.97
36663603--36663653	23	2.2	23	85	0	66	47	7	9	35	1.66
36663616--36663663	23	2.1	23	88	0	69	41	10	10	37	1.74
36663622--36663669	23	2.0	23	84	4	60	47	8	8	35	1.64
36669915--36669941	8	3.4	8	100	0	54	0	11	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36672880--36673090	28	7.2	28	64	11	109	28	20	15	35	1.93
36672893--36673111	31	7.4	31	65	12	118	29	22	14	32	1.94
36672865--36673546	59	11.7	59	85	5	787	28	24	13	34	1.93
36672874--36673432	296	1.9	296	87	0	823	28	24	13	34	1.93
36673183--36673445	28	9.0	28	66	17	133	28	27	12	32	1.92
36673414--36673515	51	2.0	51	82	3	125	32	22	10	34	1.89
36673508--36673585	29	2.7	29	85	0	93	21	24	14	39	1.90
36691954--36691984	13	2.3	14	94	5	55	67	12	19	0	1.22
36692226--36692260	16	2.1	18	89	10	56	80	5	8	5	1.03
36693093--36693225	44	3.0	45	78	10	155	23	28	22	25	1.99
36693081--36693231	45	3.4	45	79	9	164	21	29	21	26	1.99
36693214--36693693	131	3.7	131	93	1	768	25	24	19	30	1.98
36693370--36693680	44	7.1	43	65	17	149	26	23	19	30	1.98
36694913--36694969	7	8.0	7	81	18	73	14	14	0	71	1.14
36694913--36694977	22	3.1	21	85	10	80	12	13	0	73	1.09
36694924--36694974	16	3.3	16	86	13	72	11	13	0	74	1.07
36695892--36695932	6	6.7	6	86	5	55	14	0	9	75	1.04
36695890--36695934	13	3.5	13	87	6	74	15	0	8	75	1.03
36695892--36695933	12	3.4	12	90	3	66	14	0	9	76	1.02
36695891--36695945	25	2.2	25	77	6	58	10	5	7	76	1.15
36698107--36698157	22	2.3	22	93	3	84	60	31	5	1	1.31
36698115--36698160	22	2.1	22	100	0	92	58	30	6	4	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36703589--36703667	30	2.6	30	77	0	86	29	18	11	40	1.86
36703648--36703807	30	5.3	30	77	7	112	22	27	13	36	1.91
36716800--36717545	129	5.8	129	93	0	1201	31	19	23	25	1.98
36717536--36717774	44	5.6	44	73	9	172	26	18	25	29	1.98
36716845--36717625	258	3.0	249	83	9	868	31	18	23	26	1.97
36717531--36717808	129	2.2	129	87	2	398	27	19	23	28	1.99
36721827--36721913	43	2.0	43	95	0	156	35	28	6	28	1.83
36725315--36725942	106	5.9	106	83	0	738	34	15	16	34	1.90
36744164--36744219	25	2.2	25	75	6	60	28	14	25	32	1.94
36744235--36744373	72	1.9	71	85	1	188	23	18	25	33	1.97
36746890--36746925	18	1.9	19	88	5	56	33	2	8	55	1.44
36748182--36748300	39	3.1	39	82	4	159	28	5	21	43	1.76
36748192--36748322	39	3.4	37	81	12	147	30	6	19	43	1.75
36749635--36749688	24	2.3	23	81	6	65	14	3	11	70	1.29
36760651--36760736	41	2.1	42	91	2	138	26	20	29	23	1.99
36767840--36767948	41	2.6	41	95	1	191	26	21	29	22	1.99
36774054--36774090	12	3.2	12	85	7	51	29	0	0	70	0.88
36774025--36774094	37	1.9	35	82	5	86	25	2	1	70	1.10
36774971--36775048	27	2.8	29	83	15	101	55	2	3	38	1.32
36774971--36775130	9	17.0	9	67	10	88	56	3	2	37	1.31
36776793--36776840	18	2.6	19	78	12	55	58	0	4	37	1.18
36777673--36777738	31	2.1	32	86	10	93	18	1	18	62	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36783293--36783371	37	2.1	37	90	0	122	25	31	18	24	1.98
36783490--36783770	47	6.0	47	95	0	490	28	30	9	31	1.88
36786082--36786200	25	4.8	25	71	8	93	36	19	24	20	1.95
36789113--36789193	36	2.2	36	85	12	112	56	2	1	39	1.20
36789913--36789941	14	2.0	15	93	6	51	34	10	0	55	1.34
36792535--36792575	21	2.0	20	86	9	57	17	29	14	36	1.89
36796908--36796977	26	2.7	26	78	12	72	60	4	2	32	1.31
36800958--36801079	37	3.3	37	76	15	144	38	31	13	16	1.88
36805197--36805237	9	4.6	9	90	0	64	41	24	9	24	1.85
36805197--36805237	18	2.3	18	100	0	82	41	24	9	24	1.85
36805244--36805293	26	2.0	26	84	4	66	26	2	6	66	1.26
36805326--36805368	5	8.0	5	85	14	59	4	0	55	39	1.20
36805321--36805389	18	3.9	18	81	9	72	8	1	47	42	1.43
36806021--36806153	43	3.1	43	84	3	151	29	16	23	30	1.96
36806040--36806154	43	2.7	44	86	2	153	29	17	23	29	1.97
36809051--36809160	41	2.6	42	81	7	125	23	21	22	31	1.98
36811776--36812016	44	5.7	44	76	13	161	29	25	17	27	1.97
36811845--36811998	78	2.0	78	88	5	231	30	26	18	24	1.98
36811923--36812042	44	2.7	44	94	0	204	30	26	19	24	1.98
36812123--36812403	44	6.4	43	80	8	291	29	24	17	28	1.97
36812123--36812388	88	3.0	89	91	5	418	30	25	16	28	1.97
36812158--36812403	132	1.9	132	89	5	390	30	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36812802--36812895	31	3.0	31	92	7	163	43	15	9	30	1.79
36813230--36813375	44	3.3	44	92	0	238	30	25	18	25	1.98
36816237--36816269	9	3.8	9	88	4	50	42	15	21	21	1.89
36817448--36817491	23	2.0	22	95	4	79	59	2	6	31	1.36
36817594--36817670	37	2.1	37	80	11	86	51	1	9	37	1.42
36818207--36818264	22	2.6	22	81	7	64	41	17	5	36	1.72
36818572--36818636	15	4.4	16	73	21	52	49	1	6	43	1.37
36820721--36820797	28	2.8	25	75	12	73	59	2	2	35	1.25
36823650--36823685	15	2.5	15	90	4	56	27	0	5	66	1.13
36824628--36824694	32	2.1	32	100	0	134	25	11	11	50	1.73
36830519--36830558	20	2.0	20	85	5	53	32	2	0	65	1.06
36834921--36834990	24	2.9	24	71	0	77	47	4	1	47	1.31
36859007--36859039	17	1.9	17	88	11	50	0	9	6	84	0.76
36860396--36860422	13	2.1	13	100	0	54	33	7	22	37	1.82
36865398--36865435	20	1.9	20	89	10	60	39	13	15	31	1.86
36868250--36868343	47	1.9	49	85	6	129	53	5	3	38	1.40
36874299--36874332	17	2.0	17	94	0	59	70	8	11	8	1.34
36874610--36874685	38	2.0	38	92	0	125	34	25	13	27	1.93
36877718--36877773	28	2.1	27	83	6	69	30	17	7	44	1.76
36879823--36879870	24	2.0	24	84	8	62	66	0	2	31	1.03
36882681--36882777	45	2.2	45	92	0	158	20	20	19	39	1.93
36883435--36883467	17	1.9	17	93	0	57	3	0	9	87	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36886635--36886668	18	1.9	17	88	5	50	61	0	0	38	0.96
36886948--36886985	18	2.0	20	85	15	53	65	5	5	23	1.34
36900943--36901008	23	2.9	23	80	10	73	60	4	3	31	1.32
36905493--36905670	27	6.6	27	84	3	205	29	28	15	26	1.96
36905514--36905669	82	1.9	81	88	3	233	29	28	15	26	1.96
36909297--36909322	13	2.0	13	100	0	52	46	0	23	30	1.53
36934650--36934686	17	2.1	18	90	5	58	54	24	0	21	1.45
36936364--36936548	51	3.6	51	81	2	221	25	17	25	31	1.97
36936560--36936648	45	2.0	45	88	4	135	28	16	22	32	1.96
36947077--36947140	29	2.2	29	80	0	74	39	10	4	45	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187